Query 047228
Match_columns 280
No_of_seqs 124 out of 435
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02605 monogalactosyldiacylg 99.9 7.7E-25 1.7E-29 205.1 12.8 119 159-278 1-120 (382)
2 PRK13608 diacylglycerol glucos 99.9 2.9E-23 6.3E-28 196.0 14.8 117 154-274 3-120 (391)
3 PF06925 MGDG_synth: Monogalac 99.9 2.2E-23 4.7E-28 177.0 12.1 110 170-279 1-110 (169)
4 PRK13609 diacylglycerol glucos 99.8 4.8E-18 1E-22 157.5 14.0 117 155-274 3-120 (380)
5 COG0707 MurG UDP-N-acetylgluco 98.0 7.7E-06 1.7E-10 78.9 5.1 107 158-275 1-108 (357)
6 TIGR01133 murG undecaprenyldip 96.6 0.0042 9.2E-08 56.4 5.8 102 157-271 1-103 (348)
7 PF13528 Glyco_trans_1_3: Glyc 96.6 0.0079 1.7E-07 54.4 7.6 106 157-275 1-111 (318)
8 PRK00726 murG undecaprenyldiph 96.6 0.0079 1.7E-07 55.4 7.6 102 156-270 1-103 (357)
9 cd03823 GT1_ExpE7_like This fa 96.5 0.0079 1.7E-07 52.6 6.6 108 158-274 1-112 (359)
10 cd04951 GT1_WbdM_like This fam 96.4 0.011 2.4E-07 52.6 7.1 36 158-196 1-37 (360)
11 cd03785 GT1_MurG MurG is an N- 96.2 0.017 3.6E-07 52.5 7.3 101 158-271 1-102 (350)
12 TIGR00661 MJ1255 conserved hyp 96.1 0.013 2.9E-07 54.2 6.4 109 158-278 1-113 (321)
13 cd01635 Glycosyltransferase_GT 96.1 0.021 4.5E-07 46.8 6.9 64 159-274 1-67 (229)
14 cd03825 GT1_wcfI_like This fam 96.0 0.016 3.4E-07 51.7 6.0 36 157-195 1-37 (365)
15 cd03811 GT1_WabH_like This fam 95.8 0.032 6.9E-07 47.9 6.7 89 158-267 1-90 (353)
16 cd03817 GT1_UGDG_like This fam 95.3 0.06 1.3E-06 47.1 6.9 100 158-277 1-103 (374)
17 TIGR00215 lpxB lipid-A-disacch 94.8 0.24 5.1E-06 47.7 10.2 32 157-191 6-37 (385)
18 cd03798 GT1_wlbH_like This fam 94.7 0.11 2.4E-06 44.9 6.7 107 159-278 1-113 (377)
19 cd04962 GT1_like_5 This family 94.5 0.044 9.6E-07 49.5 4.1 97 157-271 1-97 (371)
20 PRK00025 lpxB lipid-A-disaccha 94.5 0.36 7.9E-06 44.8 10.2 34 156-192 1-34 (380)
21 cd03801 GT1_YqgM_like This fam 94.0 0.29 6.3E-06 41.9 7.9 97 158-274 1-101 (374)
22 PRK12446 undecaprenyldiphospho 93.8 0.28 6E-06 46.8 8.2 35 156-194 1-35 (352)
23 cd03820 GT1_amsD_like This fam 93.2 0.17 3.8E-06 43.4 5.2 91 158-268 1-93 (348)
24 cd03799 GT1_amsK_like This is 92.7 1.1 2.4E-05 39.8 9.8 99 158-278 1-99 (355)
25 cd03794 GT1_wbuB_like This fam 92.6 0.12 2.7E-06 45.0 3.4 37 158-197 1-40 (394)
26 cd03784 GT1_Gtf_like This fami 91.3 0.75 1.6E-05 43.2 7.3 34 157-194 1-34 (401)
27 TIGR03590 PseG pseudaminic aci 91.1 1.4 3.1E-05 40.6 8.8 31 248-278 70-100 (279)
28 cd03814 GT1_like_2 This family 90.0 0.37 8.1E-06 42.3 3.8 35 158-195 1-38 (364)
29 COG4671 Predicted glycosyl tra 88.9 0.81 1.8E-05 45.5 5.6 106 152-269 5-118 (400)
30 PRK06756 flavodoxin; Provision 88.8 0.94 2E-05 37.5 5.2 40 156-198 1-40 (148)
31 PLN02871 UDP-sulfoquinovose:DA 88.7 2 4.4E-05 41.8 8.2 41 150-194 52-97 (465)
32 cd03808 GT1_cap1E_like This fa 88.3 2.1 4.6E-05 36.9 7.3 35 158-196 1-35 (359)
33 PRK05568 flavodoxin; Provision 86.9 1.7 3.6E-05 35.4 5.5 40 156-198 1-40 (142)
34 PRK05569 flavodoxin; Provision 86.6 1.7 3.6E-05 35.5 5.4 40 156-198 1-40 (141)
35 cd03807 GT1_WbnK_like This fam 86.4 2.9 6.3E-05 36.3 7.0 35 158-195 1-36 (365)
36 PRK09922 UDP-D-galactose:(gluc 86.2 4.8 0.0001 37.4 8.8 96 157-272 1-98 (359)
37 cd03812 GT1_CapH_like This fam 85.9 4 8.6E-05 36.5 7.9 94 158-275 1-97 (358)
38 PRK06703 flavodoxin; Provision 85.7 1.7 3.6E-05 36.2 5.0 40 156-198 1-40 (151)
39 PF03358 FMN_red: NADPH-depend 85.4 3.5 7.6E-05 33.8 6.7 43 157-202 1-45 (152)
40 cd03802 GT1_AviGT4_like This f 85.4 3.5 7.6E-05 36.5 7.2 94 157-272 1-101 (335)
41 cd03822 GT1_ecORF704_like This 85.0 3.1 6.6E-05 36.7 6.6 27 158-184 1-29 (366)
42 PRK13556 azoreductase; Provisi 85.0 1.8 4E-05 38.1 5.2 50 156-206 1-54 (208)
43 PRK03767 NAD(P)H:quinone oxido 83.8 2.4 5.3E-05 37.2 5.4 40 156-198 1-41 (200)
44 PRK12767 carbamoyl phosphate s 82.2 6.8 0.00015 36.0 7.9 80 156-269 1-80 (326)
45 COG0716 FldA Flavodoxins [Ener 81.9 2.7 5.9E-05 35.2 4.8 29 156-184 1-29 (151)
46 PRK00170 azoreductase; Reviewe 81.5 4.1 8.9E-05 35.0 5.9 49 156-205 1-52 (201)
47 PRK09271 flavodoxin; Provision 80.5 3.7 8.1E-05 34.8 5.2 36 157-195 1-36 (160)
48 PRK01355 azoreductase; Reviewe 80.4 5.4 0.00012 35.1 6.3 45 156-201 1-49 (199)
49 PRK06849 hypothetical protein; 80.4 9.5 0.00021 36.5 8.5 85 154-268 2-86 (389)
50 PRK09267 flavodoxin FldA; Vali 78.4 3.8 8.2E-05 34.7 4.6 27 156-182 1-27 (169)
51 PRK07308 flavodoxin; Validated 77.8 4.9 0.00011 33.2 5.0 39 156-197 1-39 (146)
52 PRK13555 azoreductase; Provisi 77.5 10 0.00022 34.1 7.4 50 156-206 1-54 (208)
53 PRK08105 flavodoxin; Provision 76.8 4.6 9.9E-05 34.3 4.6 39 156-197 1-39 (149)
54 PF02525 Flavodoxin_2: Flavodo 75.3 13 0.00029 32.0 7.3 49 157-207 1-52 (199)
55 PRK09739 hypothetical protein; 75.3 6 0.00013 34.5 5.1 42 155-199 2-45 (199)
56 PRK09004 FMN-binding protein M 75.2 5.9 0.00013 33.5 4.9 38 156-196 1-38 (146)
57 cd03821 GT1_Bme6_like This fam 73.8 12 0.00027 32.5 6.7 36 158-196 1-39 (375)
58 COG1819 Glycosyl transferases, 73.5 3.9 8.5E-05 40.2 3.9 103 156-276 1-114 (406)
59 COG1182 AcpD Acyl carrier prot 73.2 7.6 0.00016 35.7 5.3 52 156-209 1-56 (202)
60 TIGR01754 flav_RNR ribonucleot 72.6 7 0.00015 32.2 4.6 33 157-192 1-33 (140)
61 PF08660 Alg14: Oligosaccharid 72.6 15 0.00033 32.1 6.9 15 167-181 7-21 (170)
62 TIGR01755 flav_wrbA NAD(P)H:qu 71.9 9.2 0.0002 33.7 5.5 39 158-199 2-41 (197)
63 PRK11104 hemG protoporphyrinog 70.2 7.2 0.00016 34.0 4.4 37 157-198 1-38 (177)
64 COG4635 HemG Flavodoxin [Energ 67.3 10 0.00022 34.2 4.7 43 157-202 1-43 (175)
65 PF13477 Glyco_trans_4_2: Glyc 65.9 12 0.00025 29.6 4.5 29 248-276 64-92 (139)
66 COG2099 CobK Precorrin-6x redu 65.6 7.1 0.00015 37.1 3.6 33 245-277 53-86 (257)
67 cd03795 GT1_like_4 This family 64.1 17 0.00036 32.4 5.5 36 158-196 1-39 (357)
68 PRK11921 metallo-beta-lactamas 63.8 13 0.00028 36.1 5.2 44 154-198 245-288 (394)
69 TIGR01753 flav_short flavodoxi 63.1 15 0.00032 29.3 4.6 37 159-198 1-37 (140)
70 PRK08057 cobalt-precorrin-6x r 60.6 11 0.00023 35.1 3.8 31 246-276 53-84 (248)
71 PF00258 Flavodoxin_1: Flavodo 60.0 21 0.00045 28.9 5.0 37 161-200 1-37 (143)
72 PF13439 Glyco_transf_4: Glyco 59.5 34 0.00073 26.9 6.1 28 164-194 8-35 (177)
73 cd03819 GT1_WavL_like This fam 59.3 13 0.00029 33.1 4.1 31 246-276 66-96 (355)
74 PF02571 CbiJ: Precorrin-6x re 58.7 12 0.00025 34.9 3.7 31 246-276 54-85 (249)
75 PF08357 SEFIR: SEFIR domain; 58.5 23 0.0005 29.1 5.1 40 157-199 1-40 (150)
76 cd08512 PBP2_NikA_DppA_OppA_li 58.0 36 0.00077 32.9 7.0 92 103-195 272-371 (476)
77 cd03816 GT1_ALG1_like This fam 57.8 22 0.00047 34.3 5.5 37 155-195 2-38 (415)
78 PF02585 PIG-L: GlcNAc-PI de-N 57.7 8.1 0.00018 31.0 2.2 25 246-270 88-112 (128)
79 PRK05452 anaerobic nitric oxid 57.4 22 0.00047 35.9 5.6 42 155-197 250-291 (479)
80 PRK10125 putative glycosyl tra 56.2 21 0.00045 34.7 5.2 38 157-197 1-39 (405)
81 cd05844 GT1_like_7 Glycosyltra 55.3 54 0.0012 29.6 7.3 31 248-278 72-102 (367)
82 PF00551 Formyl_trans_N: Formy 54.6 40 0.00086 29.2 6.1 22 246-267 67-88 (181)
83 cd03805 GT1_ALG2_like This fam 54.5 27 0.00058 32.1 5.3 34 157-194 1-36 (392)
84 cd00995 PBP2_NikA_DppA_OppA_li 54.3 47 0.001 31.5 7.1 92 103-195 258-360 (466)
85 PRK10307 putative glycosyl tra 54.0 41 0.00089 31.8 6.6 35 157-195 1-39 (412)
86 TIGR00715 precor6x_red precorr 52.0 13 0.00029 34.6 3.0 27 248-274 55-82 (256)
87 TIGR03088 stp2 sugar transfera 51.4 65 0.0014 29.6 7.3 28 157-184 2-30 (374)
88 PF06414 Zeta_toxin: Zeta toxi 50.3 1.7E+02 0.0037 25.3 10.0 48 153-203 11-58 (199)
89 COG4271 Predicted nucleotide-b 49.9 13 0.00028 34.7 2.4 30 166-197 87-116 (233)
90 cd08491 PBP2_NikA_DppA_OppA_li 48.9 53 0.0012 32.0 6.7 37 158-195 316-353 (473)
91 PF03033 Glyco_transf_28: Glyc 48.7 23 0.0005 28.0 3.5 23 167-192 8-30 (139)
92 PRK04930 glutathione-regulated 48.3 34 0.00075 30.5 4.8 43 154-200 3-45 (184)
93 cd03804 GT1_wbaZ_like This fam 47.9 55 0.0012 29.8 6.3 26 158-183 1-28 (351)
94 cd03809 GT1_mtfB_like This fam 47.8 65 0.0014 28.3 6.5 27 158-184 1-31 (365)
95 PF00496 SBP_bac_5: Bacterial 47.3 21 0.00046 32.8 3.5 82 109-193 230-327 (374)
96 cd08517 PBP2_NikA_DppA_OppA_li 46.3 37 0.0008 32.7 5.1 37 158-195 335-371 (480)
97 PRK10422 lipopolysaccharide co 45.4 53 0.0011 30.9 5.9 98 153-270 2-99 (352)
98 cd08508 PBP2_NikA_DppA_OppA_li 45.4 73 0.0016 31.0 7.0 34 156-193 325-358 (470)
99 PRK07206 hypothetical protein; 45.3 83 0.0018 30.1 7.3 25 248-272 60-84 (416)
100 TIGR03492 conserved hypothetic 44.7 48 0.001 32.3 5.6 102 164-277 3-112 (396)
101 PRK12359 flavodoxin FldB; Prov 44.0 41 0.00089 29.6 4.6 26 157-182 1-26 (172)
102 PRK07116 flavodoxin; Provision 43.8 29 0.00064 29.3 3.6 28 156-183 2-29 (160)
103 PRK12815 carB carbamoyl phosph 43.6 23 0.00051 39.2 3.6 20 247-266 619-638 (1068)
104 PRK06242 flavodoxin; Provision 42.5 27 0.00059 28.5 3.1 26 157-182 1-27 (150)
105 PRK09288 purT phosphoribosylgl 42.4 1.6E+02 0.0035 27.9 8.7 21 248-268 65-85 (395)
106 PLN02735 carbamoyl-phosphate s 42.2 71 0.0015 35.9 7.1 41 154-197 21-66 (1102)
107 TIGR01007 eps_fam capsular exo 41.8 61 0.0013 27.9 5.3 40 155-197 16-55 (204)
108 PLN02735 carbamoyl-phosphate s 41.4 16 0.00035 40.8 2.0 20 247-266 638-657 (1102)
109 TIGR03566 FMN_reduc_MsuE FMN r 41.4 60 0.0013 27.7 5.2 40 158-199 1-42 (174)
110 COG0859 RfaF ADP-heptose:LPS h 41.3 2.4E+02 0.0051 26.7 9.6 98 156-275 1-98 (334)
111 cd08513 PBP2_thermophilic_Hb8_ 41.0 79 0.0017 30.6 6.4 36 159-195 339-374 (482)
112 PRK10427 putative PTS system f 40.8 62 0.0014 26.8 5.0 29 156-184 3-32 (114)
113 TIGR01752 flav_long flavodoxin 40.1 47 0.001 28.3 4.3 26 158-183 1-26 (167)
114 PHA03392 egt ecdysteroid UDP-g 39.9 2.5E+02 0.0053 28.7 10.0 36 158-194 22-57 (507)
115 cd08516 PBP2_NikA_DppA_OppA_li 39.9 98 0.0021 29.6 6.8 92 103-195 254-355 (457)
116 PRK15413 glutathione ABC trans 39.6 58 0.0013 32.3 5.4 92 103-195 286-384 (512)
117 PF13377 Peripla_BP_3: Peripla 39.3 49 0.0011 26.4 4.1 27 253-279 63-89 (160)
118 cd08499 PBP2_Ylib_like The sub 38.7 1.1E+02 0.0023 29.7 6.9 91 103-195 257-355 (474)
119 cd08494 PBP2_NikA_DppA_OppA_li 37.5 94 0.002 29.6 6.3 30 166-196 324-353 (448)
120 cd06313 PBP1_ABC_sugar_binding 37.4 1.4E+02 0.0031 26.3 7.0 105 164-279 99-204 (272)
121 PF12038 DUF3524: Domain of un 37.1 34 0.00073 30.7 3.0 25 157-181 1-25 (168)
122 PF13579 Glyco_trans_4_4: Glyc 37.0 24 0.00052 27.3 1.8 29 248-277 61-91 (160)
123 KOG2154 Predicted nucleolar pr 36.9 73 0.0016 33.0 5.6 67 209-275 298-385 (505)
124 cd08496 PBP2_NikA_DppA_OppA_li 36.4 71 0.0015 30.8 5.3 91 103-196 253-352 (454)
125 PRK10569 NAD(P)H-dependent FMN 35.8 98 0.0021 27.4 5.7 39 157-198 1-41 (191)
126 COG3980 spsG Spore coat polysa 35.6 39 0.00085 33.1 3.4 28 157-184 1-31 (318)
127 PF09651 Cas_APE2256: CRISPR-a 35.5 70 0.0015 27.0 4.6 42 158-201 24-65 (136)
128 cd08511 PBP2_NikA_DppA_OppA_li 35.3 80 0.0017 30.4 5.5 86 103-193 258-351 (467)
129 PF02310 B12-binding: B12 bind 35.0 1.6E+02 0.0035 22.9 6.3 35 161-198 4-38 (121)
130 cd08514 PBP2_AppA_like The sub 34.3 1.1E+02 0.0025 29.5 6.4 31 165-196 346-377 (483)
131 cd08498 PBP2_NikA_DppA_OppA_li 33.3 1.3E+02 0.0028 29.3 6.6 38 157-195 330-368 (481)
132 cd03792 GT1_Trehalose_phosphor 33.3 3.9E+02 0.0085 24.7 9.6 33 158-193 1-34 (372)
133 PRK10953 cysJ sulfite reductas 33.2 60 0.0013 34.0 4.5 42 154-198 59-100 (600)
134 smart00763 AAA_PrkA PrkA AAA d 33.0 57 0.0012 32.4 4.1 59 126-184 42-105 (361)
135 PRK00091 miaA tRNA delta(2)-is 32.8 61 0.0013 31.1 4.2 28 155-182 2-29 (307)
136 PRK05723 flavodoxin; Provision 32.8 83 0.0018 26.9 4.6 28 157-184 1-28 (151)
137 TIGR01369 CPSaseII_lrg carbamo 32.6 90 0.0019 34.7 5.9 40 155-197 553-597 (1050)
138 cd08507 PBP2_SgrR_like The C-t 32.6 91 0.002 30.3 5.4 86 103-199 247-338 (448)
139 PRK14733 coaE dephospho-CoA ki 32.3 3.2E+02 0.0069 24.7 8.5 52 158-219 7-58 (204)
140 cd08490 PBP2_NikA_DppA_OppA_li 31.9 1.6E+02 0.0034 28.3 6.9 28 168-196 332-359 (470)
141 PF06564 YhjQ: YhjQ protein; 31.8 91 0.002 29.2 5.0 39 156-197 1-39 (243)
142 cd08515 PBP2_NikA_DppA_OppA_li 31.7 1.7E+02 0.0036 28.3 7.0 41 150-193 317-358 (460)
143 COG1091 RfbD dTDP-4-dehydrorha 31.5 41 0.00089 32.3 2.8 23 248-270 40-62 (281)
144 cd02035 ArsA ArsA ATPase funct 31.5 3.6E+02 0.0079 23.7 11.0 36 159-197 1-36 (217)
145 PF06283 ThuA: Trehalose utili 31.4 47 0.001 29.2 3.0 41 158-200 1-45 (217)
146 PF04007 DUF354: Protein of un 31.1 3.4E+02 0.0074 26.4 9.1 32 247-278 72-103 (335)
147 cd01574 PBP1_LacI Ligand-bindi 31.1 70 0.0015 27.5 4.0 100 164-279 94-195 (264)
148 cd06275 PBP1_PurR Ligand-bindi 30.9 3.5E+02 0.0075 23.3 8.5 101 166-279 97-199 (269)
149 PRK01372 ddl D-alanine--D-alan 30.9 73 0.0016 29.1 4.2 40 155-197 3-45 (304)
150 COG3181 Uncharacterized protei 30.7 88 0.0019 30.6 4.9 37 159-197 31-67 (319)
151 cd08502 PBP2_NikA_DppA_OppA_li 30.6 1.1E+02 0.0023 29.9 5.5 37 158-196 333-370 (472)
152 cd00550 ArsA_ATPase Oxyanion-t 30.6 83 0.0018 28.7 4.5 36 158-196 1-36 (254)
153 cd08493 PBP2_DppA_like The sub 30.6 1.7E+02 0.0036 28.5 6.9 17 168-184 350-366 (482)
154 TIGR01931 cysJ sulfite reducta 30.5 71 0.0015 33.2 4.5 40 156-198 58-97 (597)
155 cd06282 PBP1_GntR_like_2 Ligan 30.3 71 0.0015 27.3 3.8 32 248-279 165-197 (266)
156 cd08505 PBP2_NikA_DppA_OppA_li 30.1 1.2E+02 0.0027 30.4 6.1 25 166-193 389-413 (528)
157 PRK05294 carB carbamoyl phosph 30.0 1.1E+02 0.0023 34.1 6.0 40 155-197 553-597 (1066)
158 TIGR02690 resist_ArsH arsenica 29.5 1.7E+02 0.0036 27.0 6.3 44 150-196 20-65 (219)
159 PF08494 DEAD_assoc: DEAD/H as 29.4 3.9E+02 0.0086 23.5 10.1 42 154-195 15-57 (187)
160 PRK13768 GTPase; Provisional 29.3 1.1E+02 0.0025 27.9 5.2 39 156-197 1-39 (253)
161 PF01583 APS_kinase: Adenylyls 29.2 1.2E+02 0.0027 26.4 5.1 39 158-199 3-41 (156)
162 cd08501 PBP2_Lpqw The substrat 28.9 1.5E+02 0.0033 28.7 6.3 27 158-184 347-373 (486)
163 TIGR03567 FMN_reduc_SsuE FMN r 28.8 1.3E+02 0.0028 25.6 5.2 38 158-198 1-40 (171)
164 PRK07239 bifunctional uroporph 28.3 1.9E+02 0.004 27.8 6.7 59 140-202 126-184 (381)
165 cd02978 KaiB_like KaiB-like fa 28.2 2.1E+02 0.0045 22.3 5.7 31 168-198 13-43 (72)
166 PF02367 UPF0079: Uncharacteri 28.1 1E+02 0.0023 25.9 4.3 28 156-183 14-41 (123)
167 TIGR01884 cas_HTH CRISPR locus 28.0 1.3E+02 0.0028 26.5 5.1 49 150-198 19-70 (203)
168 TIGR03445 mycothiol_MshB 1D-my 27.8 58 0.0013 30.8 3.1 22 246-267 111-132 (284)
169 COG1428 Deoxynucleoside kinase 27.7 1.8E+02 0.0039 27.2 6.2 52 157-220 4-55 (216)
170 cd07388 MPP_Tt1561 Thermus the 27.6 51 0.0011 30.2 2.6 22 245-266 166-187 (224)
171 PRK06762 hypothetical protein; 27.6 89 0.0019 25.8 3.9 26 156-181 1-26 (166)
172 TIGR02195 heptsyl_trn_II lipop 27.3 3.7E+02 0.0081 24.8 8.3 94 158-273 1-94 (334)
173 PF14582 Metallophos_3: Metall 27.3 50 0.0011 31.5 2.5 22 246-267 194-215 (255)
174 TIGR02619 putative CRISPR-asso 27.0 3.1E+02 0.0066 23.9 7.2 27 158-185 36-62 (149)
175 cd08518 PBP2_NikA_DppA_OppA_li 27.0 1.2E+02 0.0026 29.4 5.2 37 159-196 328-364 (464)
176 PF02302 PTS_IIB: PTS system, 26.9 1.5E+02 0.0033 22.0 4.7 33 161-196 3-36 (90)
177 cd08503 PBP2_NikA_DppA_OppA_li 26.7 1.5E+02 0.0033 28.6 5.9 39 157-196 322-360 (460)
178 PF02114 Phosducin: Phosducin; 26.7 34 0.00073 32.3 1.3 29 20-48 171-201 (265)
179 COG0802 Predicted ATPase or ki 26.6 1.3E+02 0.0027 26.5 4.7 27 156-182 24-50 (149)
180 PRK10916 ADP-heptose:LPS hepto 26.5 2.5E+02 0.0053 26.4 7.0 94 157-272 1-94 (348)
181 TIGR00829 FRU PTS system, fruc 26.5 1.1E+02 0.0024 24.0 4.0 38 159-197 1-39 (85)
182 TIGR02855 spore_yabG sporulati 26.4 53 0.0011 31.8 2.5 20 246-265 141-160 (283)
183 COG2120 Uncharacterized protei 26.3 68 0.0015 29.3 3.2 24 246-269 97-120 (237)
184 PRK06851 hypothetical protein; 26.2 1.8E+02 0.0038 28.9 6.2 78 103-184 163-241 (367)
185 PRK10964 ADP-heptose:LPS hepto 26.1 1.8E+02 0.004 26.8 6.1 95 157-269 1-97 (322)
186 cd03786 GT1_UDP-GlcNAc_2-Epime 25.9 97 0.0021 28.3 4.2 23 246-268 76-98 (363)
187 cd06299 PBP1_LacI_like_13 Liga 25.7 89 0.0019 26.9 3.7 31 248-279 166-196 (265)
188 cd08165 MPP_MPPE1 human MPPE1 25.6 84 0.0018 26.6 3.4 25 245-269 25-49 (156)
189 cd06270 PBP1_GalS_like Ligand 25.4 1E+02 0.0022 26.7 4.0 33 247-279 165-198 (268)
190 smart00382 AAA ATPases associa 25.3 78 0.0017 23.3 2.9 28 157-184 2-29 (148)
191 PF07724 AAA_2: AAA domain (Cd 25.1 1.9E+02 0.004 25.1 5.5 44 155-201 1-45 (171)
192 cd08495 PBP2_NikA_DppA_OppA_li 25.1 1.9E+02 0.0042 28.1 6.2 37 158-195 334-371 (482)
193 PRK13196 pyrrolidone-carboxyla 24.9 67 0.0015 29.2 2.9 18 248-265 51-68 (211)
194 PF05582 Peptidase_U57: YabG p 24.8 70 0.0015 31.1 3.0 20 246-265 142-161 (287)
195 PF14639 YqgF: Holliday-juncti 24.7 60 0.0013 28.1 2.4 19 246-264 51-69 (150)
196 PRK13195 pyrrolidone-carboxyla 24.7 69 0.0015 29.7 2.9 18 248-265 51-68 (222)
197 cd08504 PBP2_OppA The substrat 24.2 1.5E+02 0.0033 28.8 5.3 38 157-196 344-382 (498)
198 TIGR00236 wecB UDP-N-acetylglu 24.2 1.2E+02 0.0026 28.2 4.5 23 246-268 74-96 (365)
199 cd06271 PBP1_AglR_RafR_like Li 24.0 1.1E+02 0.0024 26.2 3.9 32 248-279 170-202 (268)
200 TIGR03446 mycothiol_Mca mycoth 24.0 69 0.0015 30.5 2.8 20 246-265 109-128 (283)
201 COG5435 Uncharacterized conser 24.0 4.7E+02 0.01 23.1 7.7 106 78-184 20-138 (147)
202 COG4408 Uncharacterized protei 24.0 3.1E+02 0.0067 27.9 7.3 94 155-271 112-208 (431)
203 COG0529 CysC Adenylylsulfate k 23.8 1.8E+02 0.0038 26.9 5.2 37 158-197 24-60 (197)
204 PF08298 AAA_PrkA: PrkA AAA do 23.6 98 0.0021 30.9 3.9 35 150-184 81-115 (358)
205 PLN00016 RNA-binding protein; 23.5 79 0.0017 30.0 3.2 43 150-196 46-88 (378)
206 COG0431 Predicted flavoprotein 23.5 1.5E+02 0.0032 25.9 4.6 37 157-195 1-39 (184)
207 TIGR03018 pepcterm_TyrKin exop 23.5 2.1E+02 0.0046 24.9 5.6 41 155-197 34-74 (207)
208 TIGR03568 NeuC_NnaA UDP-N-acet 23.3 2.3E+02 0.005 27.2 6.3 22 245-266 80-101 (365)
209 cd08520 PBP2_NikA_DppA_OppA_li 23.0 2.9E+02 0.0063 26.8 7.0 26 158-184 331-356 (468)
210 TIGR03029 EpsG chain length de 22.9 1.9E+02 0.004 26.2 5.3 45 155-203 102-146 (274)
211 PF12242 Eno-Rase_NADH_b: NAD( 22.9 38 0.00083 26.9 0.8 25 154-181 37-61 (78)
212 PF07015 VirC1: VirC1 protein; 22.8 1.8E+02 0.0038 27.3 5.2 39 156-197 1-39 (231)
213 PF00438 S-AdoMet_synt_N: S-ad 22.6 1.2E+02 0.0026 25.0 3.6 36 157-193 1-41 (100)
214 PRK01021 lpxB lipid-A-disaccha 22.5 8E+02 0.017 26.3 10.4 33 247-279 299-332 (608)
215 PRK12815 carB carbamoyl phosph 22.5 1E+02 0.0022 34.4 4.1 39 155-196 6-49 (1068)
216 cd06298 PBP1_CcpA_like Ligand- 22.3 1.2E+02 0.0026 26.0 3.8 32 248-279 167-198 (268)
217 PF03215 Rad17: Rad17 cell cyc 22.2 1E+02 0.0022 31.9 3.8 27 156-182 44-70 (519)
218 TIGR02193 heptsyl_trn_I lipopo 22.1 1.1E+02 0.0023 28.1 3.7 104 158-277 1-104 (319)
219 PRK00131 aroK shikimate kinase 22.0 1.3E+02 0.0027 24.5 3.7 27 156-182 3-29 (175)
220 PF05729 NACHT: NACHT domain 22.0 1.4E+02 0.0031 23.7 4.0 29 158-186 1-29 (166)
221 cd01541 PBP1_AraR Ligand-bindi 21.8 1.3E+02 0.0027 26.2 3.9 33 247-279 171-204 (273)
222 cd02033 BchX Chlorophyllide re 21.6 2.2E+02 0.0047 27.7 5.8 43 152-197 26-68 (329)
223 PRK13193 pyrrolidone-carboxyla 21.6 85 0.0018 28.6 2.9 18 248-265 50-67 (209)
224 COG2039 Pcp Pyrrolidone-carbox 21.6 86 0.0019 29.1 2.9 19 247-265 49-67 (207)
225 COG0463 WcaA Glycosyltransfera 21.4 2.5E+02 0.0053 20.9 4.9 40 156-197 2-41 (291)
226 TIGR02294 nickel_nikA nickel A 21.4 2.6E+02 0.0057 27.4 6.4 37 159-196 344-380 (500)
227 PRK15179 Vi polysaccharide bio 21.3 6.5E+02 0.014 27.1 9.7 23 246-268 388-410 (694)
228 cd01543 PBP1_XylR Ligand-bindi 21.2 1.3E+02 0.0028 26.1 3.8 33 247-279 159-192 (265)
229 PRK13366 protocatechuate 4,5-d 21.2 85 0.0018 29.9 2.9 22 246-267 36-60 (284)
230 PF13192 Thioredoxin_3: Thiore 21.1 2.9E+02 0.0063 20.3 5.2 35 158-196 2-36 (76)
231 cd06283 PBP1_RegR_EndR_KdgR_li 20.9 1.4E+02 0.0029 25.6 3.9 99 166-279 96-199 (267)
232 cd03800 GT1_Sucrose_synthase T 20.7 1.3E+02 0.0027 27.4 3.8 25 168-195 21-45 (398)
233 cd06294 PBP1_ycjW_transcriptio 20.4 1.5E+02 0.0032 25.5 4.0 33 247-279 171-204 (270)
234 PRK13512 coenzyme A disulfide 20.3 1E+02 0.0022 30.1 3.3 35 156-197 1-35 (438)
235 cd06287 PBP1_LacI_like_8 Ligan 20.2 1.5E+02 0.0032 26.4 4.0 32 248-279 167-199 (269)
No 1
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.92 E-value=7.7e-25 Score=205.13 Aligned_cols=119 Identities=66% Similarity=1.190 Sum_probs=102.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH-HHHHHHHhcCCCchhhH
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ-LWKVAFHSTSPKWIHSC 237 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P-LY~~~Y~~T~~~~~~s~ 237 (280)
|||||+|+|+||++||+||+|+|++.++++++|+++|++++.+|++.+.+.++|..++++ | +|+++|+.++.++....
T Consensus 1 ilils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~Y~~~~~~-p~~~~~~y~~~~~~~~~~~ 79 (382)
T PLN02605 1 VLILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDLWKEHTPWPFNQLPRSYKFLVKH-PQLWKMTYHGTNPRLIHQS 79 (382)
T ss_pred CEEEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEehhhhcCcchhhhHHHHHHHHhhC-HHHHHHHHHhcCchhhhHH
Confidence 699999999999999999999998765556899999999999999988899999999988 8 99999998865444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 238 YLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 238 l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
....+...+.+++.++|++++||+||||||+++++++++++
T Consensus 80 ~~~~~~~~~~~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~ 120 (382)
T PLN02605 80 YFAATSAFVAREVAKGLMKYKPDIIVSVHPLMQHVPLRVLR 120 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCEEEEeCcCcccCHHHHHH
Confidence 44456677789999999999999999999998776655544
No 2
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=2.9e-23 Score=196.00 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=98.3
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH-HHHHHHHhcCCC
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ-LWKVAFHSTSPK 232 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P-LY~~~Y~~T~~~ 232 (280)
.+||||||||+|+|+||++||+||+|+|++..+++++++++|++++.+|++++++.++|.++++++| +|+++|+.++.
T Consensus 3 ~~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~- 81 (391)
T PRK13608 3 TQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPD- 81 (391)
T ss_pred CCCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCch-
Confidence 4568999999999999999999999999887655689999999999999999999999999999999 99999987653
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHH
Q 047228 233 WIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPL 274 (280)
Q Consensus 233 ~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL 274 (280)
+... .....+..+++.++|++++||+||||||+++...+
T Consensus 82 ~~~~---~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~~~l 120 (391)
T PRK13608 82 KLDK---CFYKYYGLNKLINLLIKEKPDLILLTFPTPVMSVL 120 (391)
T ss_pred hhHH---HHHHHHHHHHHHHHHHHhCcCEEEECCcHHHHHHH
Confidence 2211 11222455899999999999999999999864433
No 3
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=99.90 E-value=2.2e-23 Score=177.04 Aligned_cols=110 Identities=30% Similarity=0.510 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 047228 170 HRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKE 249 (280)
Q Consensus 170 H~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~l~~~l~~l~~rk 249 (280)
|++||+||+|+|++.++++++|+++|++++.+|++.+.+.++|.++++++++|+++|+.++.....+.....+.+++.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y~~~~~~~~ly~~~y~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKAYLFMVRHAPLYGWLYRWTDKRRPRSKFLSALSRLFARR 80 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 99999999999988767789999999999999999999999999999999999999999876544344455678889999
Q ss_pred HHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 250 VEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 250 L~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
|.++|++++||+|||||||++++++..+|+
T Consensus 81 l~~~l~~~~PD~IIsThp~~~~~~l~~lk~ 110 (169)
T PF06925_consen 81 LIRLLREFQPDLIISTHPFPAQVPLSRLKR 110 (169)
T ss_pred HHHHHhhcCCCEEEECCcchhhhHHHHHHH
Confidence 999999999999999999999995555543
No 4
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.77 E-value=4.8e-18 Score=157.50 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=96.4
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH-HHHHHHHhcCCCc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ-LWKVAFHSTSPKW 233 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P-LY~~~Y~~T~~~~ 233 (280)
++|||||+|+++|+||.+||+||+|+|+++. .. ++.++|.++..+|++.+.+...|..++++.| +|+++|+.+....
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g-~~-~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKG-IK-DVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcC-CC-cEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 5679999999999999999999999998763 33 6788999999999999999999999999998 9999998765432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHH
Q 047228 234 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPL 274 (280)
Q Consensus 234 ~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL 274 (280)
.. ....++..+..+++.++|++++||+||||||+.+...+
T Consensus 81 ~~-~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~ 120 (380)
T PRK13609 81 DK-KIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPEL 120 (380)
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHH
Confidence 11 12224445567899999999999999999999864433
No 5
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=7.7e-06 Score=78.93 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=64.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 237 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~ 237 (280)
+.++|+++-+|||...|.||+++|.++. .+ ++......+.....+.... ..+...+...++-+..+.. .
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g-~~-~v~~~~~~~~~e~~l~~~~-~~~~~~I~~~~~~~~~~~~--------~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRG-WE-QVIVLGTGDGLEAFLVKQY-GIEFELIPSGGLRRKGSLK--------L 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhC-cc-EEEEecccccceeeecccc-CceEEEEecccccccCcHH--------H
Confidence 3688999999999999999999998873 23 4555544333333222211 1122222222111111110 0
Q ss_pred HHH-HHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHH
Q 047228 238 YLA-AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLW 275 (280)
Q Consensus 238 l~~-~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~ 275 (280)
+.. +.......+.++.|++++||+||+|+++++..+.-
T Consensus 70 ~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~ 108 (357)
T COG0707 70 LKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGI 108 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHH
Confidence 111 12234567889999999999999999998876543
No 6
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.59 E-value=0.0042 Score=56.36 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 236 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s 236 (280)
|||+|.++..| ||...|..|.++|.+. +.+|.++-. +. ........ .|..-+...|... + .......
T Consensus 1 ~~i~~~~g~~~-g~~~~~~~La~~L~~~---g~eV~vv~~-~~--~~~~~~~~-~~g~~~~~i~~~~--~---~~~~~~~ 67 (348)
T TIGR01133 1 KKVVLAAGGTG-GHIFPALAVAEELIKR---GVEVLWLGT-KR--GLEKRLVP-KAGIEFYFIPVGG--L---RRKGSFR 67 (348)
T ss_pred CeEEEEeCccH-HHHhHHHHHHHHHHhC---CCEEEEEeC-CC--cchhcccc-cCCCceEEEeccC--c---CCCChHH
Confidence 47999999997 9999889999999876 356666521 11 00000000 0000000011000 0 0000001
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhCCCEEEeCCcchhh
Q 047228 237 CYLAAM-AAYYAKEVEAGLMEYKPDIIISVHPLMQH 271 (280)
Q Consensus 237 ~l~~~l-~~l~~rkL~~lIee~kPDVIISTHPfpa~ 271 (280)
.+...+ ......++.+++++++||+|+++.++++.
T Consensus 68 ~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~ 103 (348)
T TIGR01133 68 LIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSG 103 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccH
Confidence 111111 12244588899999999999999887643
No 7
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.59 E-value=0.0079 Score=54.44 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 236 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s 236 (280)
||||+...+.|.||.+-+.+|.++| + +.++.+...+ +. .+.+.+.|. ....|-+...+.... .....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~------~~-~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSG------PA-PEFLKPRFP--VREIPGLGPIQENGR-LDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcC------Cc-HHHhccccC--EEEccCceEeccCCc-cchHH
Confidence 6899999999999999999999999 3 2344443322 11 122211111 111121111111000 00000
Q ss_pred HHHHHH-----HHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHH
Q 047228 237 CYLAAM-----AAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLW 275 (280)
Q Consensus 237 ~l~~~l-----~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~ 275 (280)
...... .....+.+.+++++++||+|||=+...+..+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~ 111 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLREFRPDLVISDFYPLAALAAR 111 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHH
Confidence 111111 112345678899999999999998777655554
No 8
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.58 E-value=0.0079 Score=55.44 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=54.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 235 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~ 235 (280)
||||+|.+...| ||...+-+|.++|.+. +.+|.++=.-. .+ ....+.. .-.+.+..-..........
T Consensus 1 ~~~i~i~~~g~g-G~~~~~~~la~~L~~~---g~ev~vv~~~~--~~-----~~~~~~~--~g~~~~~~~~~~~~~~~~~ 67 (357)
T PRK00726 1 MKKILLAGGGTG-GHVFPALALAEELKKR---GWEVLYLGTAR--GM-----EARLVPK--AGIEFHFIPSGGLRRKGSL 67 (357)
T ss_pred CcEEEEEcCcch-HhhhHHHHHHHHHHhC---CCEEEEEECCC--ch-----hhhcccc--CCCcEEEEeccCcCCCChH
Confidence 578999988887 9999999999999875 45666543211 00 0000000 0001000000000000001
Q ss_pred hHHHHHHH-HHHHHHHHHHHhhhCCCEEEeCCcchh
Q 047228 236 SCYLAAMA-AYYAKEVEAGLMEYKPDIIISVHPLMQ 270 (280)
Q Consensus 236 s~l~~~l~-~l~~rkL~~lIee~kPDVIISTHPfpa 270 (280)
+.+..... .....++.+++++++||+|+|+.+.++
T Consensus 68 ~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~ 103 (357)
T PRK00726 68 ANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVS 103 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcch
Confidence 11111111 233468899999999999999986654
No 9
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.48 E-value=0.0079 Score=52.59 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=57.1
Q ss_pred eEEEEEcCC----CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCc
Q 047228 158 NVLILMSDT----GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 233 (280)
Q Consensus 158 RVLILSASt----GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~ 233 (280)
||||+|..+ +||+...+..+.++|.+. +.+|.++.................+... +.+. .+......
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~- 71 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKR---GHEVAVLTAGEDPPRQDKEVIGVVVYGR----PIDE-VLRSALPR- 71 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhc---CCceEEEeCCCCCCCcccccccceeecc----cccc-ccCCCchh-
Confidence 588998665 589999999999999765 4577777654332221110000000000 0000 00000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHH
Q 047228 234 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPL 274 (280)
Q Consensus 234 ~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL 274 (280)
..............+.+.+++++.+||+|++.++......+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~ 112 (359)
T cd03823 72 DLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSI 112 (359)
T ss_pred hhhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHH
Confidence 00001111223445688899999999999999976554443
No 10
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=96.37 E-value=0.011 Score=52.58 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=29.0
Q ss_pred eEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|||+++.+.| ||+...+.+|.++|.+. +.+|.++..
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~---g~~v~v~~~ 37 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAK---GHQVAIISL 37 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccC---CceEEEEEE
Confidence 5899988888 99999999999999765 346666653
No 11
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.19 E-value=0.017 Score=52.55 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=52.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 237 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~ 237 (280)
||+|-+..+| ||...+..|.++|.+. +.+|.++=.-. ..... .+.. .-.+.+..-+...........
T Consensus 1 ~~~~~~~~~g-G~~~~~~~la~~l~~~---G~ev~v~~~~~---~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~ 67 (350)
T cd03785 1 RILIAGGGTG-GHIFPALALAEELRER---GAEVLFLGTKR---GLEAR----LVPK--AGIPLHTIPVGGLRRKGSLKK 67 (350)
T ss_pred CEEEEecCch-hhhhHHHHHHHHHHhC---CCEEEEEECCC---cchhh----cccc--cCCceEEEEecCcCCCChHHH
Confidence 5777777776 9999999999999876 34666542211 11000 0000 000000000000000000011
Q ss_pred HHHHHH-HHHHHHHHHHHhhhCCCEEEeCCcchhh
Q 047228 238 YLAAMA-AYYAKEVEAGLMEYKPDIIISVHPLMQH 271 (280)
Q Consensus 238 l~~~l~-~l~~rkL~~lIee~kPDVIISTHPfpa~ 271 (280)
+...+. .....++.+++++.+||+|+++.++++-
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~ 102 (350)
T cd03785 68 LKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSG 102 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcch
Confidence 111111 2234578899999999999999877643
No 12
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.13 E-value=0.013 Score=54.24 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=59.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHH-HHHHHhHHHHHHHHHHhcCCC-chh
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERS-YKFMVKHVQLWKVAFHSTSPK-WIH 235 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~-Yl~~Vr~~PLY~~~Y~~T~~~-~~~ 235 (280)
||||--+.+|-||..-|-||.++|.+ + .+|.++- +....+.+.+. +. -+...|.....+. +.. ...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g--~ev~~~~-----~~~~~~~~~~~~~~-~~~~~p~~~~~~~--~~~~~~~ 68 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--D--YEVSYIA-----SGRSKNYISKYGFK-VFETFPGIKLKGE--DGKVNIV 68 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--C--CeEEEEE-----cCCHHHhhhhhcCc-ceeccCCceEeec--CCcCcHH
Confidence 68888899999999999999999975 2 3554432 11112221111 11 0111121111110 110 000
Q ss_pred hHHHH--HHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 236 SCYLA--AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 236 s~l~~--~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
..+.. .+......+..+++++.+||+||+...+.+..+++.++
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~aA~~~~ 113 (321)
T TIGR00661 69 KTLRNKEYSPKKAIRREINIIREYNPDLIISDFEYSTVVAAKLLK 113 (321)
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhcC
Confidence 00100 01012344667899999999999999998877776553
No 13
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.13 E-value=0.021 Score=46.79 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=46.0
Q ss_pred EEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchh
Q 047228 159 VLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 235 (280)
Q Consensus 159 VLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~ 235 (280)
||+++... +||+...+..++++|.+. +.+|.++.
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~---g~~v~v~~---------------------------------------- 37 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARR---GHEVEVVA---------------------------------------- 37 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHc---CCeEEEEE----------------------------------------
Confidence 46777666 899999999999999875 44666555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHH
Q 047228 236 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPL 274 (280)
Q Consensus 236 s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL 274 (280)
.....+.+.+.+.+||+|++.++......+
T Consensus 38 ---------~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~ 67 (229)
T cd01635 38 ---------LLLLLLLRILRGFKPDVVHAHGYYPAPLAL 67 (229)
T ss_pred ---------echHHHHHHHhhcCCCEEEEcCCCcHHHHH
Confidence 011223344457899999999988887754
No 14
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.98 E-value=0.016 Score=51.74 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=28.7
Q ss_pred ceEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
||||+++.+.+ ||+...+..+.++|.+. +.+|.++.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~---G~~v~v~~ 37 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAA---GVDSTMLV 37 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhc---CCceeEEE
Confidence 57999998866 99999999999999876 33555544
No 15
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.76 E-value=0.032 Score=47.89 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=52.3
Q ss_pred eEEEEEcCC-CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhh
Q 047228 158 NVLILMSDT-GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 236 (280)
Q Consensus 158 RVLILSASt-GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s 236 (280)
||||++.++ +||+...+..+.++|.+. +.+|.++............ ..... .. .+......
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~---g~~v~v~~~~~~~~~~~~~--~~~~~----~~-----~~~~~~~~---- 62 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKR---GYDVTLVVLRDEGDYLELL--PSNVK----LI-----PVRVLKLK---- 62 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhc---CceEEEEEcCCCCcccccc--ccchh----hh-----ceeeeecc----
Confidence 689999887 899999999999999654 4566665543322221100 00000 00 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCEEEeCCc
Q 047228 237 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 237 ~l~~~l~~l~~rkL~~lIee~kPDVIISTHP 267 (280)
..........+.+++++.+||+|++.++
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~~dii~~~~~ 90 (353)
T cd03811 63 ---SLRDLLAILRLRRLLRKEKPDVVISHLT 90 (353)
T ss_pred ---cccchhHHHHHHHHHHhcCCCEEEEcCc
Confidence 0011234467888999999999999998
No 16
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.30 E-value=0.06 Score=47.06 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=54.5
Q ss_pred eEEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCch
Q 047228 158 NVLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 234 (280)
Q Consensus 158 RVLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~ 234 (280)
||||+|..+ +||+...+.++.++|.+. +.+|.++..-....... .. +. .....+. .. ...
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~---g~~v~v~~~~~~~~~~~-~~----~~-~~~~~~~---~~-----~~~ 63 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKR---GHEVYVVAPSYPGAPEE-EE----VV-VVRPFRV---PT-----FKY 63 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHc---CCeEEEEeCCCCCCCcc-cc----cc-ccccccc---cc-----chh
Confidence 689998664 789999999999999876 34666554321111100 00 00 0000000 00 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhh
Q 047228 235 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVL 277 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vL 277 (280)
. ...........+.+.+++.+||+|++..|+....++..+
T Consensus 64 -~--~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~ 103 (374)
T cd03817 64 -P--DFRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRV 103 (374)
T ss_pred -h--hhhccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHH
Confidence 0 000111223456667899999999999998876655443
No 17
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=94.85 E-value=0.24 Score=47.73 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEE
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRI 191 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV 191 (280)
.||+|....+ |||.-+| ||.++|.+.. ++++.
T Consensus 6 ~ki~i~aGgt-sGhi~pa-al~~~l~~~~-~~~~~ 37 (385)
T TIGR00215 6 PTIALVAGEA-SGDILGA-GLRQQLKEHY-PNARF 37 (385)
T ss_pred CeEEEEeCCc-cHHHHHH-HHHHHHHhcC-CCcEE
Confidence 3577666555 4999999 9999998763 34343
No 18
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=94.66 E-value=0.11 Score=44.90 Aligned_cols=107 Identities=16% Similarity=0.018 Sum_probs=58.5
Q ss_pred EEEEEcCC----CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCch
Q 047228 159 VLILMSDT----GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 234 (280)
Q Consensus 159 VLILSASt----GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~ 234 (280)
|||++..+ +||+......+.++|.+. +.+|.++................. ....+............
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~---g~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-- 71 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKR---GVEVTVLAPGPWGPKLLDLLKGRL----VGVERLPVLLPVVPLLK-- 71 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHC---CCceEEEecCCCCCCchhhccccc----ccccccccCcchhhccc--
Confidence 57777665 489999999999999854 456766655433222111100000 00000000000000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--hhCCCEEEeCCcchhhHHHHhhh
Q 047228 235 HSCYLAAMAAYYAKEVEAGLM--EYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIe--e~kPDVIISTHPfpa~VlL~vLk 278 (280)
...........+.++++ +.+||+|++.++++...++..++
T Consensus 72 ----~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~ 113 (377)
T cd03798 72 ----GPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLK 113 (377)
T ss_pred ----cchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHH
Confidence 00122345567888888 99999999999988877655443
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.51 E-value=0.044 Score=49.54 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 236 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s 236 (280)
|||+|++.+..||....+..++++|.+. +.+|.++..- ++.-. ..+...+.... .. ....+....
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~---G~~v~v~~~~---~~~~~----~~~~~~~~~~~-~~----~~~~~~~~~ 65 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARR---GHEVHFITSS---RPFRL----DEYSPNIFFHE-VE----VPQYPLFQY 65 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhc---CCceEEEecC---CCcch----hhhccCeEEEE-ec----ccccchhhc
Confidence 4799999888999999999999999876 3456655432 22100 00000000000 00 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhh
Q 047228 237 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQH 271 (280)
Q Consensus 237 ~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~ 271 (280)
........+.+.+++++.+||+|.+.++.+..
T Consensus 66 ---~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~ 97 (371)
T cd04962 66 ---PPYDLALASKIAEVAKRYKLDLLHVHYAVPHA 97 (371)
T ss_pred ---chhHHHHHHHHHHHHhcCCccEEeecccCCcc
Confidence 01112345688889999999999987776543
No 20
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.47 E-value=0.36 Score=44.80 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.7
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEE
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIF 192 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~ 192 (280)
||||+|....+ |||...|. +.++|++.. +++++.
T Consensus 1 ~~ki~i~~Ggt-~G~i~~a~-l~~~L~~~~-~~~~~~ 34 (380)
T PRK00025 1 PLRIAIVAGEV-SGDLLGAG-LIRALKARA-PNLEFV 34 (380)
T ss_pred CceEEEEecCc-CHHHHHHH-HHHHHHhcC-CCcEEE
Confidence 45777555544 68999999 999998754 344443
No 21
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=94.01 E-value=0.29 Score=41.93 Aligned_cols=97 Identities=9% Similarity=-0.058 Sum_probs=56.3
Q ss_pred eEEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhH-HHHHHHHHhHHHHHHHHHHhcCCCc
Q 047228 158 NVLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDM-ERSYKFMVKHVQLWKVAFHSTSPKW 233 (280)
Q Consensus 158 RVLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li-~~~Yl~~Vr~~PLY~~~Y~~T~~~~ 233 (280)
||+|++... +||+...+..+.++|.+. +.+|.++.............. ...+.. .....
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~---g~~v~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~- 63 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAAR---GHEVTVLTPGDGGLPDEEEVGGIVVVRP-------------PPLLR- 63 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhc---CceEEEEecCCCCCCceeeecCcceecC-------------Ccccc-
Confidence 578888553 489999999999999764 456666554422221110000 000000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHH
Q 047228 234 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPL 274 (280)
Q Consensus 234 ~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL 274 (280)
.............+.+.+++.+||+|++.++......+
T Consensus 64 ---~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~ 101 (374)
T cd03801 64 ---VRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA 101 (374)
T ss_pred ---cchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH
Confidence 00111223345678888999999999999999888765
No 22
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=93.85 E-value=0.28 Score=46.84 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=26.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
|+| +++++.=.|||.--|-||.++|++. +++|..+
T Consensus 1 ~~~-i~~~~GGTGGHi~Pala~a~~l~~~---g~~v~~v 35 (352)
T PRK12446 1 MKK-IVFTGGGSAGHVTPNLAIIPYLKED---NWDISYI 35 (352)
T ss_pred CCe-EEEEcCCcHHHHHHHHHHHHHHHhC---CCEEEEE
Confidence 455 5566666689999999999999864 4566554
No 23
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=93.19 E-value=0.17 Score=43.40 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=52.1
Q ss_pred eEEEEEcCCC--chHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchh
Q 047228 158 NVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 235 (280)
Q Consensus 158 RVLILSAStG--gGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~ 235 (280)
||+|++.+++ ||....+..+.++|.+. +.+|.++.....-.+.. .... -++..++. .. ...+.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~---g~~v~v~~~~~~~~~~~-~~~~-----~~~~~~~~----~~-~~~~~- 65 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEK---GHEVTIISLDKGEPPFY-ELDP-----KIKVIDLG----DK-RDSKL- 65 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhC---CCeEEEEecCCCCCCcc-ccCC-----ccceeecc----cc-cccch-
Confidence 6899998887 99999999999999764 45676665433220110 0000 00000000 00 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcc
Q 047228 236 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 236 s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPf 268 (280)
.........+.+++++.+||+|+++++.
T Consensus 66 -----~~~~~~~~~~~~~l~~~~~d~i~~~~~~ 93 (348)
T cd03820 66 -----LARFKKLRRLRKLLKNNKPDVVISFLTS 93 (348)
T ss_pred -----hccccchHHHHHhhcccCCCEEEEcCch
Confidence 0111234577888999999999999987
No 24
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=92.72 E-value=1.1 Score=39.80 Aligned_cols=99 Identities=6% Similarity=-0.147 Sum_probs=54.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 237 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~ 237 (280)
|||+++..++.|-.+....+.++|.+. +.+|.++-......+.... .+....... -|.
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~---g~~v~v~~~~~~~~~~~~~----~~~~~~~~~-~~~-------------- 58 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAA---GHEVEIFSLRPPEDTLVHP----EDRAELART-RYL-------------- 58 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhC---CCeEEEEEecCcccccccc----cccccccch-HHH--------------
Confidence 699999999988666666666676554 5577666544332221110 000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 238 YLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 238 l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
...+........+.+.+++.+||+|.+..+.....+....+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~ 99 (355)
T cd03799 59 ARSLALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLAS 99 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHH
Confidence 00111122345677777899999999988765555544443
No 25
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.55 E-value=0.12 Score=44.99 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=29.3
Q ss_pred eEEEEEcCCC---chHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 158 NVLILMSDTG---GGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 158 RVLILSAStG---gGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
||||++..++ +|+...+..+.++|.+. +.+|.++...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~---g~~v~~~~~~ 40 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKR---GHEVTVITGS 40 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhC---CceEEEEecC
Confidence 6999998876 59999999999999765 4567666543
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=91.27 E-value=0.75 Score=43.16 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
|||||++.. +.||..-.-+|.++|.++ +.+|.+.
T Consensus 1 mrIl~~~~p-~~GHv~P~l~la~~L~~r---Gh~V~~~ 34 (401)
T cd03784 1 MRVLITTIG-SRGDVQPLVALAWALRAA---GHEVRVA 34 (401)
T ss_pred CeEEEEeCC-CcchHHHHHHHHHHHHHC---CCeEEEe
Confidence 589999988 899999999999999876 3355543
No 27
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=91.10 E-value=1.4 Score=40.64 Aligned_cols=31 Identities=29% Similarity=0.044 Sum_probs=23.3
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
..+.++|++.+||+||++|+-....-...+|
T Consensus 70 ~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k 100 (279)
T TIGR03590 70 LELINLLEEEKFDILIVDHYGLDADWEKLIK 100 (279)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH
Confidence 3588899999999999999865554444443
No 28
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.98 E-value=0.37 Score=42.33 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=26.8
Q ss_pred eEEEEEcCCC---chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTG---GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStG---gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
||||++..++ ||+......|.++|.+. +.+|.++-
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~---g~~v~~~~ 38 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRAR---GHEVLVIA 38 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHC---CCEEEEEe
Confidence 6899997776 88999999999999765 33555443
No 29
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=88.92 E-value=0.81 Score=45.55 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=67.8
Q ss_pred cccccceEEEEEc-CCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHH--H-HHHH---
Q 047228 152 GAERTKNVLILMS-DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHV--Q-LWKV--- 224 (280)
Q Consensus 152 ~~~~~kRVLILSA-StGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~--P-LY~~--- 224 (280)
++..++||++-|= .+|=||.+-+.+|+++|.+.+ .+++|-++.....++.+. |-.-+++. | ++..
T Consensus 5 ~~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~-~~~~Il~IsG~~~~~~F~-------~~~gVd~V~LPsl~k~~~G 76 (400)
T COG4671 5 EASKRPRILFYSHDLLGLGHLRRALRIAHALVEDY-LGFDILIISGGPPAGGFP-------GPAGVDFVKLPSLIKGDNG 76 (400)
T ss_pred chhccceEEEEehhhccchHHHHHHHHHHHHhhcc-cCceEEEEeCCCccCCCC-------CcccCceEecCceEecCCC
Confidence 5667789998874 489999999999999998886 478898888776665543 22223333 4 4432
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHHHHHHHHhhhCCCEE-EeCCcch
Q 047228 225 AFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDII-ISVHPLM 269 (280)
Q Consensus 225 ~Y~~T~~~~~~s~l~~~l~~l~~rkL~~lIee~kPDVI-ISTHPfp 269 (280)
.|..-+... .. ..+..+=..-+...++.++||++ |=-.||.
T Consensus 77 ~~~~~d~~~---~l-~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~G 118 (400)
T COG4671 77 EYGLVDLDG---DL-EETKKLRSQLILSTAETFKPDIFIVDKFPFG 118 (400)
T ss_pred ceeeeecCC---CH-HHHHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 233222211 11 12223334567888999999965 4556665
No 30
>PRK06756 flavodoxin; Provisional
Probab=88.75 E-value=0.94 Score=37.53 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=29.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|++|+|++.|.-|-=...|++|+++++.. ++++++.|+-+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~---g~~v~~~~~~~ 40 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRET---ENEIEVIDIMD 40 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhc---CCeEEEeehhc
Confidence 56899999995444445699999999754 45777777643
No 31
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=88.69 E-value=2 Score=41.80 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=27.5
Q ss_pred cccccccceEEEEEcC-----CCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 150 QIGAERTKNVLILMSD-----TGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 150 ~~~~~~~kRVLILSAS-----tGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
+.+..++|||++++.. .||+.... ..+.++|.+. +.+|.++
T Consensus 52 ~~~~~~~mrI~~~~~~~~~~~~gG~~~~~-~~l~~~L~~~---G~eV~vl 97 (465)
T PLN02871 52 TDSRSRPRRIALFVEPSPFSYVSGYKNRF-QNFIRYLREM---GDEVLVV 97 (465)
T ss_pred ccccCCCceEEEEECCcCCcccccHHHHH-HHHHHHHHHC---CCeEEEE
Confidence 3344677899999643 48888766 5777788765 3466555
No 32
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=88.34 E-value=2.1 Score=36.87 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=27.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|||+++.. ++|+......+.++|.+. +.+|.++..
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~~---g~~v~~~~~ 35 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRAA---GYEVHVVAP 35 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHhc---CCeeEEEec
Confidence 58999888 888999999999999664 446665543
No 33
>PRK05568 flavodoxin; Provisional
Probab=86.88 E-value=1.7 Score=35.42 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=30.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|++++|++.|.-|-=...|++|++.+... ++++++.|+-+
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~---g~~v~~~~~~~ 40 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKEN---GAEVKLLNVSE 40 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHC---CCeEEEEECCC
Confidence 56899999995555667899999999654 56788777654
No 34
>PRK05569 flavodoxin; Provisional
Probab=86.64 E-value=1.7 Score=35.49 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=29.7
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|++|+|++.|..|-=...|++|++.+.+. ++++++.|+-+
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~---g~~v~~~~~~~ 40 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEA---GAEVTIKHVAD 40 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhC---CCeEEEEECCc
Confidence 56899999995444478899999999664 45677777543
No 35
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=86.40 E-value=2.9 Score=36.26 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=25.9
Q ss_pred eEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|||+++..++ ||....+..|.++|.+. +.++.++-
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~---~~~v~~~~ 36 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRD---RFEHVVIS 36 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhc---cceEEEEe
Confidence 5788887665 88999999999999654 33555543
No 36
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=86.17 E-value=4.8 Score=37.44 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=50.0
Q ss_pred ceEEEEEcCCC--chHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCch
Q 047228 157 KNVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 234 (280)
Q Consensus 157 kRVLILSAStG--gGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~ 234 (280)
|||++++.+.. ||=-.....+.++|.+. +.++++.++-.-. +.. ..+...+...+.. .....
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~-~~g~~v~v~~~~~---~~~-----~~~~~~~~~~~~~-------~~~~~ 64 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEES-KINCEMFFFCRND---KMD-----KAWLKEIKYAQSF-------SNIKL 64 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhc-CcceeEEEEecCC---CCC-----hHHHHhcchhccc-------ccchh
Confidence 57999987642 66566667788888765 2355665543211 110 1111111111100 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhH
Q 047228 235 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI 272 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~V 272 (280)
..+. ......++.+.+++.+||+|+|+.+.+...
T Consensus 65 -~~~~---~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~ 98 (359)
T PRK09922 65 -SFLR---RAKHVYNFSKWLKETQPDIVICIDVISCLY 98 (359)
T ss_pred -hhhc---ccHHHHHHHHHHHhcCCCEEEEcCHHHHHH
Confidence 0000 011235678999999999999998876543
No 37
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=85.92 E-value=4 Score=36.53 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=53.4
Q ss_pred eEEEEEcC-CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHH--HHHHHHHHhcCCCch
Q 047228 158 NVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHV--QLWKVAFHSTSPKWI 234 (280)
Q Consensus 158 RVLILSAS-tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~--PLY~~~Y~~T~~~~~ 234 (280)
|||+++.+ -+||.......+.++|.+. +++|.++-.-. .... +...+... +.+. .... .
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~---~~~v~~i~~~~-~~~~--------~~~~~~~~~~~~~~-----~~~~-~ 62 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRS---KIQFDFLVTSK-EEGD--------YDDEIEKLGGKIYY-----IPAR-K 62 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCcc---ceEEEEEEeCC-CCcc--------hHHHHHHcCCeEEE-----ecCC-C
Confidence 68999988 4699999999999999743 55666554321 1111 11111111 1110 1111 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHH
Q 047228 235 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLW 275 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~ 275 (280)
.. . ....+.+.+++++.+||+|.+..+....+++.
T Consensus 63 ~~-~-----~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~ 97 (358)
T cd03812 63 KN-P-----LKYFKKLYKLIKKNKYDIVHVHGSSASGFILL 97 (358)
T ss_pred cc-H-----HHHHHHHHHHHhcCCCCEEEEeCcchhHHHHH
Confidence 01 0 11234566788999999999988875555443
No 38
>PRK06703 flavodoxin; Provisional
Probab=85.65 E-value=1.7 Score=36.16 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=30.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|++++|++.|..|-=...|++|++.+... ++++.+.|+-+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~---g~~v~~~~~~~ 40 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAF---DHEVVLQEMDG 40 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhc---CCceEEEehhh
Confidence 56899999996666678899999999654 45666666543
No 39
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=85.42 E-value=3.5 Score=33.78 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=33.6
Q ss_pred ceEEEEEcCC--CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC
Q 047228 157 KNVLILMSDT--GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG 202 (280)
Q Consensus 157 kRVLILSASt--GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP 202 (280)
|||||+.+|. .|=-.+.|+++++.+.+. +++++++|+-++..|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~---g~e~~~i~l~~~~~p 45 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA---GAEVEVIDLADYPLP 45 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT---TEEEEEEECTTSHCH
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc---CCEEEEEeccccchh
Confidence 5899999886 355567899999999775 679999998887444
No 40
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=85.39 E-value=3.5 Score=36.51 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=53.6
Q ss_pred ceEEEEEcC-------CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhc
Q 047228 157 KNVLILMSD-------TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHST 229 (280)
Q Consensus 157 kRVLILSAS-------tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T 229 (280)
||||+++.+ .+||-......|.++|.+. +.+|.++.......+. . .....+ ..+..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~---g~~V~v~~~~~~~~~~--~--------~~~~~~---~~~~~- 63 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVAR---GHEVTLFASGDSKTAA--P--------LVPVVP---EPLRL- 63 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhc---CceEEEEecCCCCccc--c--------eeeccC---CCccc-
Confidence 579999865 5788888899999999765 4567666543321110 0 000000 00000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhH
Q 047228 230 SPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI 272 (280)
Q Consensus 230 ~~~~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~V 272 (280)
. .. . ...........+.+.+++.+||+|.+-.+.....
T Consensus 64 ~-~~--~--~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~ 101 (335)
T cd03802 64 D-AP--G--RDRAEAEALALAERALAAGDFDIVHNHSLHLPLP 101 (335)
T ss_pred c-cc--h--hhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh
Confidence 0 00 0 0111223446788999999999998877666544
No 41
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=85.02 E-value=3.1 Score=36.72 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=22.5
Q ss_pred eEEEEEcCC--CchHHHHHHHHHHHHhhh
Q 047228 158 NVLILMSDT--GGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 158 RVLILSASt--GgGH~qAAeAIaEAL~~~ 184 (280)
||+|++... +||-......|.++|.+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~ 29 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSAR 29 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhc
Confidence 688888654 489999999999999876
No 42
>PRK13556 azoreductase; Provisional
Probab=85.02 E-value=1.8 Score=38.11 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=34.9
Q ss_pred cceEEEEEcCCCchHHH----HHHHHHHHHhhhcCCCeEEEEEeccccccCCchh
Q 047228 156 TKNVLILMSDTGGGHRA----SAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLN 206 (280)
Q Consensus 156 ~kRVLILSAStGgGH~q----AAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~ 206 (280)
|+|||++.+|.=.|+.+ .++++.+.+.+..+ +.+|+++|+.+.--|.++.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~-~~~V~~~DL~~~~~P~~~~ 54 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHP-NDTVVELDLYKEELPYVGV 54 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCH
Confidence 67999999997434455 55666666665543 6799999998655566554
No 43
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=83.76 E-value=2.4 Score=37.19 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=31.0
Q ss_pred cceEEEEEcCCCchHHH-HHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRA-SAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~q-AAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|+||||++.|.. ||.. .|+++++.+++. .+++|+++|+-+
T Consensus 1 M~kilIvy~S~~-G~T~~lA~~ia~g~~~~--~G~ev~~~~l~~ 41 (200)
T PRK03767 1 MAKVLVLYYSMY-GHIETMAEAVAEGAREV--AGAEVTIKRVPE 41 (200)
T ss_pred CCeEEEEEcCCC-CHHHHHHHHHHHHHhhc--CCcEEEEEeccc
Confidence 468999999984 7765 599999999752 266898888754
No 44
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=82.23 E-value=6.8 Score=36.01 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=44.9
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 235 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~ 235 (280)
|+||||+.+ |+++ +.+++++++ . .+++|..+|... ..|.. + ... ..|.. .. ..
T Consensus 1 ~~~vLv~g~--~~~~-~~~~~l~~~----~-~g~~vi~~d~~~-~~~~~-------~--~~d------~~~~~-p~--~~ 53 (326)
T PRK12767 1 MMNILVTSA--GRRV-QLVKALKKS----L-LKGRVIGADISE-LAPAL-------Y--FAD------KFYVV-PK--VT 53 (326)
T ss_pred CceEEEecC--CccH-HHHHHHHHh----c-cCCEEEEECCCC-cchhh-------H--hcc------CcEec-CC--CC
Confidence 688999988 5566 556665553 1 257888888752 22211 0 010 01111 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcch
Q 047228 236 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 236 s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfp 269 (280)
. .-+.+.+.++++++++|+||++.-..
T Consensus 54 ~-------~~~~~~l~~~~~~~~id~ii~~~d~~ 80 (326)
T PRK12767 54 D-------PNYIDRLLDICKKEKIDLLIPLIDPE 80 (326)
T ss_pred C-------hhHHHHHHHHHHHhCCCEEEECCcHH
Confidence 0 11335788889999999999886443
No 45
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=81.89 E-value=2.7 Score=35.24 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=27.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
|++|+|+++|..|.=..+|+.|++.|...
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~ 29 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD 29 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC
Confidence 68999999999999999999999999775
No 46
>PRK00170 azoreductase; Reviewed
Probab=81.54 E-value=4.1 Score=35.03 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=34.5
Q ss_pred cceEEEEEcCCCc--hHH-HHHHHHHHHHhhhcCCCeEEEEEeccccccCCch
Q 047228 156 TKNVLILMSDTGG--GHR-ASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL 205 (280)
Q Consensus 156 ~kRVLILSAStGg--GH~-qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~ 205 (280)
|||||++.+|--. |-. +.|+++.+.+++.++ +.+|+++|+.+.--|.+.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~-~~~v~~~dL~~~~~p~~~ 52 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHP-DDEVTVRDLAAEPIPVLD 52 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCC-CCeEEEEECCCCCCCCCC
Confidence 5789999988633 333 467778888877643 569999999766546544
No 47
>PRK09271 flavodoxin; Provisional
Probab=80.47 E-value=3.7 Score=34.83 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|||+|+++|.-|-=...|++|+++|... ++++.+.|
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~---g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEA---GHEVDWVE 36 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhC---CCeeEEEe
Confidence 5799999997766688899999999764 34554444
No 48
>PRK01355 azoreductase; Reviewed
Probab=80.36 E-value=5.4 Score=35.08 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=32.9
Q ss_pred cceEEEEEcCCC---ch-HHHHHHHHHHHHhhhcCCCeEEEEEecccccc
Q 047228 156 TKNVLILMSDTG---GG-HRASAEAIRDAFKIEFGDEYRIFVKDVCKEYA 201 (280)
Q Consensus 156 ~kRVLILSAStG---gG-H~qAAeAIaEAL~~~~p~~veV~IVD~Le~is 201 (280)
|+|||++.+|-= +| -.+.|+++.+++++.. ++.+|+++|+.+.-.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~-~~~~v~~~dL~~~~~ 49 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVN-PNDEIIILDLNETKV 49 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Confidence 678999998873 23 3467788888887653 357999999986543
No 49
>PRK06849 hypothetical protein; Provisional
Probab=80.35 E-value=9.5 Score=36.48 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=47.7
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 233 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~ 233 (280)
..+|+|||+.++.+ .|-.+..+|.+. +.+|..+|..... +. +....-+.+|......
T Consensus 2 ~~~~~VLI~G~~~~-----~~l~iar~l~~~---G~~Vi~~d~~~~~-----------~~---~~s~~~d~~~~~p~p~- 58 (389)
T PRK06849 2 NTKKTVLITGARAP-----AALELARLFHNA---GHTVILADSLKYP-----------LS---RFSRAVDGFYTIPSPR- 58 (389)
T ss_pred CCCCEEEEeCCCcH-----HHHHHHHHHHHC---CCEEEEEeCCchH-----------HH---HHHHhhhheEEeCCCC-
Confidence 35689999844443 355666677554 5688888865311 00 0111112222211111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcc
Q 047228 234 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 234 ~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPf 268 (280)
.. ..-+...|.++++++++|+||.|.--
T Consensus 59 ~d-------~~~~~~~L~~i~~~~~id~vIP~~e~ 86 (389)
T PRK06849 59 WD-------PDAYIQALLSIVQRENIDLLIPTCEE 86 (389)
T ss_pred CC-------HHHHHHHHHHHHHHcCCCEEEECChH
Confidence 11 11234678889999999999999863
No 50
>PRK09267 flavodoxin FldA; Validated
Probab=78.35 E-value=3.8 Score=34.67 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
||+|+|+++|..|-=...|++|++.+.
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhC
Confidence 468999998844444445999999985
No 51
>PRK07308 flavodoxin; Validated
Probab=77.78 E-value=4.9 Score=33.23 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=28.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+++.|+++|..|-=...|++|++.+.+. +.++++.|+-
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~---g~~~~~~~~~ 39 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLREL---GHDVDVDECT 39 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhC---CCceEEEecc
Confidence 45799999997777777899999999754 3455555543
No 52
>PRK13555 azoreductase; Provisional
Probab=77.53 E-value=10 Score=34.11 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=34.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHH----hhhcCCCeEEEEEeccccccCCchh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAF----KIEFGDEYRIFVKDVCKEYAGWPLN 206 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL----~~~~p~~veV~IVD~Le~isP~l~~ 206 (280)
|+|||++.++-=.++.+...+|.+++ ++.. ++.+|+..|+.+.-.|.++.
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~-p~~~V~~~DL~~~~~p~l~~ 54 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEAN-PNTEITELDLFALDLPYYGN 54 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhC-CCCeEEEEECCCCCCCcCCH
Confidence 67899999986334445555555544 4443 45699999999876676653
No 53
>PRK08105 flavodoxin; Provisional
Probab=76.76 E-value=4.6 Score=34.29 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=31.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|++|+|+++|..|-=...|+.|++.+.+. ++++.+.|.-
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~---g~~~~~~~~~ 39 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQ---GHEVTLFEDP 39 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhC---CCceEEechh
Confidence 56899999999999999999999999754 4566666643
No 54
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=75.33 E-value=13 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=33.2
Q ss_pred ceEEEEEcC-CC-chH-HHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhh
Q 047228 157 KNVLILMSD-TG-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLND 207 (280)
Q Consensus 157 kRVLILSAS-tG-gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~l 207 (280)
|||||+.++ -+ ++. .+.|+++.+++++..+ .+|+++|+.+...|.+..-
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~--~~v~~~dL~~~~~p~l~~~ 52 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP--HEVEIRDLYEEFLPVLDSE 52 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT--SEEEEEETTTTT--SSSHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC--CEEEEEECcccccccchHH
Confidence 679999877 44 233 5667888888887743 5899999998877776653
No 55
>PRK09739 hypothetical protein; Provisional
Probab=75.28 E-value=6 Score=34.54 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=30.4
Q ss_pred ccceEEEEEcCCCchH--HHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 155 RTKNVLILMSDTGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 155 ~~kRVLILSAStGgGH--~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
.|||||++.++.=.+- .+.++++.+++++. +.+++++|+.+.
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~---g~~v~~~dL~~~ 45 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQER---GHQVEELDLYRS 45 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHC---CCEEEEEEhhhh
Confidence 3789999998863322 45678888888764 358889998863
No 56
>PRK09004 FMN-binding protein MioC; Provisional
Probab=75.16 E-value=5.9 Score=33.50 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=30.3
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|++|+|+++|..|==...|+.|++++.+. +.++.++|.
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~---g~~~~~~~~ 38 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEA---GFSTETLHG 38 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHc---CCceEEecc
Confidence 56899999998888889999999999765 345555564
No 57
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=73.82 E-value=12 Score=32.48 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=27.9
Q ss_pred eEEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|||+++.++ +||....+..+.++|.+. +.+|.++-.
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~---g~~v~v~~~ 39 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKL---GHEVTVATT 39 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhc---CCcEEEEec
Confidence 689999876 789999999999999654 456666543
No 58
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=73.48 E-value=3.9 Score=40.17 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHH---------HHHHH
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQL---------WKVAF 226 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PL---------Y~~~Y 226 (280)
+||||++.... -||..-.-||.++|.++ +.+|... ..+. |...+....+ ....+
T Consensus 1 ~mkil~~~~~~-~Ghv~p~~aL~~eL~~~---gheV~~~-----~~~~--------~~~~ve~ag~~f~~~~~~~~~~~~ 63 (406)
T COG1819 1 RMKILFVVCGA-YGHVNPCLALGKELRRR---GHEVVFA-----STGK--------FKEFVEAAGLAFVAYPIRDSELAT 63 (406)
T ss_pred CceEEEEeccc-cccccchHHHHHHHHhc---CCeEEEE-----eCHH--------HHHHHHHhCcceeeccccCChhhh
Confidence 57899999999 99999999999999876 4456432 2222 2222322220 10111
Q ss_pred HhcCCCchhhHHH--HHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHh
Q 047228 227 HSTSPKWIHSCYL--AAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWV 276 (280)
Q Consensus 227 ~~T~~~~~~s~l~--~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~v 276 (280)
...... ..+.+. ...-....+.+.+++.+..||+|+..=.....++++.
T Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 114 (406)
T COG1819 64 EDGKFA-GVKSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLGLAARL 114 (406)
T ss_pred hhhhhh-ccchhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhhhhhhh
Confidence 100000 001111 1111233457788999999999998776665544443
No 59
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=73.15 E-value=7.6 Score=35.72 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=38.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHH----hhhcCCCeEEEEEeccccccCCchhhHH
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAF----KIEFGDEYRIFVKDVCKEYAGWPLNDME 209 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL----~~~~p~~veV~IVD~Le~isP~l~~li~ 209 (280)
|+|||++.+|.= |=.+...+|.++| ++..| +.+++..|+.+.--|.++..+.
T Consensus 1 MskvL~I~as~~-~~~S~S~~l~~~Fi~~yk~~~P-~dev~~~DL~~e~iP~ld~~~~ 56 (202)
T COG1182 1 MSKVLVIKASPL-GENSVSRKLADEFIETYKEKHP-NDEVIERDLAAEPIPHLDEELL 56 (202)
T ss_pred CceEEEEecCCC-ccccHHHHHHHHHHHHHHHhCC-CCeEEEeecccCCCcccCHHHH
Confidence 678999999976 5556666665555 54544 6699999999988888765543
No 60
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=72.60 E-value=7 Score=32.21 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEE
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIF 192 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~ 192 (280)
||++|+++|..|-=...|++|++.+... +.+++
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~---g~~v~ 33 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKD---GHEVD 33 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhC---CeeEE
Confidence 4799999996666678899999999754 34554
No 61
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=72.57 E-value=15 Score=32.13 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHH
Q 047228 167 GGGHRASAEAIRDAF 181 (280)
Q Consensus 167 GgGH~qAAeAIaEAL 181 (280)
+|||..=...|.+.+
T Consensus 7 sGGHt~eml~L~~~~ 21 (170)
T PF08660_consen 7 SGGHTAEMLRLLKAL 21 (170)
T ss_pred CcHHHHHHHHHHHHh
Confidence 699999999999999
No 62
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=71.90 E-value=9.2 Score=33.74 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=29.7
Q ss_pred eEEEEEcCCCchHHH-HHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 158 NVLILMSDTGGGHRA-SAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 158 RVLILSAStGgGH~q-AAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
||||++.|. .||.. .|++|++.+++. .+++|++.|+-+.
T Consensus 2 kilIiY~S~-~G~T~~lA~~ia~g~~~~--~g~ev~~~~v~~~ 41 (197)
T TIGR01755 2 KVLVLYYSM-YGHIETMARAVAEGAREV--DGAEVVVKRVPET 41 (197)
T ss_pred eEEEEEeCC-CCHHHHHHHHHHHHHHhc--CCCEEEEEecccc
Confidence 699999998 56655 599999999754 2568888887543
No 63
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=70.20 E-value=7.2 Score=33.96 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCchHHHH-HHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHRAS-AEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~qA-AeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
||+||+++| ..|+..- |++|++.|.. +.++.++|+-+
T Consensus 1 MkilIvY~S-~~G~T~~iA~~Ia~~l~~----g~~v~~~~~~~ 38 (177)
T PRK11104 1 MKTLILYSS-RDGQTRKIASYIASELKE----GIQCDVVNLHR 38 (177)
T ss_pred CcEEEEEEC-CCChHHHHHHHHHHHhCC----CCeEEEEEhhh
Confidence 479999998 6677665 9999999964 23566555443
No 64
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=67.27 E-value=10 Score=34.19 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG 202 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP 202 (280)
||+||++++--|-=...|+-|+..|.+. +.+|++.|+-+...|
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~---g~qvdi~dl~~~~~~ 43 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRES---GIQVDIQDLHAVEEP 43 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhc---CCeeeeeehhhhhcc
Confidence 5799999998888899999999999876 568999998766544
No 65
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=65.87 E-value=12 Score=29.60 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=22.1
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWV 276 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~v 276 (280)
.++.+++++.+||+|.|--+.+...+..+
T Consensus 64 ~~l~k~ik~~~~DvIh~h~~~~~~~~~~l 92 (139)
T PF13477_consen 64 FRLRKIIKKEKPDVIHCHTPSPYGLFAML 92 (139)
T ss_pred HHHHHHhccCCCCEEEEecCChHHHHHHH
Confidence 38999999999999988777654444433
No 66
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=65.58 E-value=7.1 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhCCCEEE-eCCcchhhHHHHhh
Q 047228 245 YYAKEVEAGLMEYKPDIII-SVHPLMQHIPLWVL 277 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVII-STHPfpa~VlL~vL 277 (280)
+..+.|.++|++++-|++| .||||++.+-..++
T Consensus 53 l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~ 86 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDATHPYAARISQNAA 86 (257)
T ss_pred CCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHH
Confidence 4567999999999999888 89999998855443
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.12 E-value=17 Score=32.36 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=26.3
Q ss_pred eEEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|||+++..+ .||....+..+.++|.+. +.+|.++..
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~---g~~v~v~~~ 39 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAAR---GIEVAVLCA 39 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhC---CCceEEEec
Confidence 588887443 578889999999999775 456666554
No 68
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=63.80 E-value=13 Score=36.07 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=34.8
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+..++|+|++.|.-|-=.+.|++|++.++... .+++|.+.|+-+
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~ 288 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAK 288 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcC-CCCeEEEEECCC
Confidence 34578999999999889999999999997321 356888877654
No 69
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=63.12 E-value=15 Score=29.28 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|+|++.|..|-=...|++|++++... ++++++.|+-+
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~---g~~v~~~~~~~ 37 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEA---GAEVDLLEVAD 37 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhc---CCeEEEEEccc
Confidence 58899887777778899999999764 45676666543
No 70
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=60.57 E-value=11 Score=35.12 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhCCCEEE-eCCcchhhHHHHh
Q 047228 246 YAKEVEAGLMEYKPDIII-SVHPLMQHIPLWV 276 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVII-STHPfpa~VlL~v 276 (280)
....|.++|++++.|+|| .||||+..+--.+
T Consensus 53 ~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a 84 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVIDATHPYAAQISANA 84 (248)
T ss_pred CHHHHHHHHHHCCCCEEEECCCccHHHHHHHH
Confidence 346889999999999888 8999998875443
No 71
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=59.97 E-value=21 Score=28.86 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=29.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 161 ILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 161 ILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
|+++|..|-=.+.|++|++.|.+. ++++.++|+-+.-
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~---g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRER---GVEVRVVDLDDFD 37 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHT---TSEEEEEEGGGSC
T ss_pred CEEECCchhHHHHHHHHHHHHHHc---CCceeeechhhhh
Confidence 688888888889999999999875 5577777766443
No 72
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=59.54 E-value=34 Score=26.90 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=21.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 164 SDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 164 AStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
...+||=-..+..|.++|.++ +.+|.++
T Consensus 8 ~~~~GG~e~~~~~l~~~l~~~---G~~v~v~ 35 (177)
T PF13439_consen 8 LPNIGGAERVVLNLARALAKR---GHEVTVV 35 (177)
T ss_dssp TTSSSHHHHHHHHHHHHHHHT---T-EEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHC---CCEEEEE
Confidence 556788889999999999876 5577766
No 73
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=59.31 E-value=13 Score=33.09 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcchhhHHHHh
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPLMQHIPLWV 276 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPfpa~VlL~v 276 (280)
....+.+++++.+||+|++.++.+......+
T Consensus 66 ~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~ 96 (355)
T cd03819 66 NVARLRRLIREEKVDIVHARSRAPAWSAYLA 96 (355)
T ss_pred HHHHHHHHHHHcCCCEEEECCCchhHHHHHH
Confidence 3457888899999999999887766555444
No 74
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=58.69 E-value=12 Score=34.86 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhCCCEEE-eCCcchhhHHHHh
Q 047228 246 YAKEVEAGLMEYKPDIII-SVHPLMQHIPLWV 276 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVII-STHPfpa~VlL~v 276 (280)
....|.++|++++.|+|| .||||+..+--.+
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na 85 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNA 85 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHH
Confidence 457899999999999888 8999998875443
No 75
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=58.49 E-value=23 Score=29.12 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
+||+|.++.-..-|.+.-.++++.|+... +++|. +|.++.
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~--g~~V~-lD~~~~ 40 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNC--GIDVI-LDQWEL 40 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhcc--CCcee-ecHHhh
Confidence 58999999999999999999999998763 56665 788876
No 76
>cd08512 PBP2_NikA_DppA_OppA_like_7 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=57.96 E-value=36 Score=32.92 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=45.6
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcccc--CCCCC-C-CcCCCccee-eecccccccceEEEEEcCCCchHHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSF--DSDDD-N-EEDGESTVE-LMQIGAERTKNVLILMSDTGGGHRASA 174 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~-~~~~~~~~~kRVLILSAStGgGH~qAA 174 (280)
|+|.+. |+++.+.++++.+.......--.+ ++... . +-+-+.--+ |++.|-+...++-|.+.+-...+.+.|
T Consensus 272 R~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~eaG~~~g~~l~l~~~~~~~~~~~~a 351 (476)
T cd08512 272 RQAIAYAIDYDGIIDQVLKGQGKPHPGPLPDGLPGGAPDLPPYKYDLEKAKELLAEAGYPNGFKLTLSYNSGNEPREDIA 351 (476)
T ss_pred HHHHHHhcCHHHHHHHHhcCCceecCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHcCCCCCcEEEEEeCCCCcchHHHH
Confidence 566655 899999998876543222111011 11000 0 000000111 123333333456555544334789999
Q ss_pred HHHHHHHhhhcCCCeEEEEEe
Q 047228 175 EAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 175 eAIaEAL~~~~p~~veV~IVD 195 (280)
++|++.|++. +-.+++..+|
T Consensus 352 ~~i~~~l~~~-Gi~v~~~~~~ 371 (476)
T cd08512 352 QLLQASLAQI-GIKVEIEPVP 371 (476)
T ss_pred HHHHHHHHHh-CCeEEEEEcC
Confidence 9999999875 2234444444
No 77
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=57.84 E-value=22 Score=34.28 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=26.5
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+.|||.++|...+++=...-+ ++++|.+. +.+|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~-~a~~L~~~---G~~V~ii~ 38 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQY-HALSLAKH---GWKVDLVG 38 (415)
T ss_pred CccEEEEEEecccCCCHHHHH-HHHHHHhc---CceEEEEE
Confidence 568999999887766555544 78888764 55777764
No 78
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=57.69 E-value=8.1 Score=30.99 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcchh
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPLMQ 270 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPfpa 270 (280)
..+.|.++|++.+||+|++.+|...
T Consensus 88 ~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 88 LVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4467999999999999999988765
No 79
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=57.43 E-value=22 Score=35.95 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=32.7
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+.++|+|++.|.-|-=.+.|++|++.+++.. .+++|.+.|+-
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g-~gv~v~~~~v~ 291 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVD-PRVAVKIFNVA 291 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhC-CCceEEEEECC
Confidence 5678999999977767799999999997652 35677777653
No 80
>PRK10125 putative glycosyl transferase; Provisional
Probab=56.23 E-value=21 Score=34.75 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=28.3
Q ss_pred ceEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 157 KNVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 157 kRVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
||||-+.++.| ||--..+..|.+.+.+. +.++.++=..
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~---G~~~~i~~~~ 39 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ---GLASHFVYGY 39 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc---CCeEEEEEec
Confidence 57888887765 88888899999999765 4567655443
No 81
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=55.32 E-value=54 Score=29.57 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
..+..++++.+||+|.+..++....++.+.+
T Consensus 72 ~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~ 102 (367)
T cd05844 72 PQLRRLLRRHRPDLVHAHFGFDGVYALPLAR 102 (367)
T ss_pred cHHHHHHHhhCCCEEEeccCchHHHHHHHHH
Confidence 3555588999999999877766555544433
No 82
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=54.61 E-value=40 Score=29.20 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhCCCEEEeCCc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHP 267 (280)
..+.+.+.+++.+||+||+...
T Consensus 67 ~~~~~~~~l~~~~~Dl~v~~~~ 88 (181)
T PF00551_consen 67 NDEELLELLESLNPDLIVVAGY 88 (181)
T ss_dssp HHHHHHHHHHHTT-SEEEESS-
T ss_pred hhhHHHHHHHhhccceeehhhh
Confidence 4467899999999999998753
No 83
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=54.47 E-value=27 Score=32.12 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=23.0
Q ss_pred ceEEEEEcC--CCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSD--TGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSAS--tGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
||||+++-+ +||+.+. +..|+++|.+. +.+|.++
T Consensus 1 mkIl~~~~~~~~gG~e~~-~~~la~~L~~~---G~~V~v~ 36 (392)
T cd03805 1 LRVAFIHPDLGIGGAERL-VVDAALALQSR---GHEVTIY 36 (392)
T ss_pred CeEEEECCCCCCchHHHH-HHHHHHHHHhC---CCeEEEE
Confidence 579999976 4555554 45588999765 4466655
No 84
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=54.25 E-value=47 Score=31.45 Aligned_cols=92 Identities=26% Similarity=0.272 Sum_probs=45.0
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCccccC-CCCCCCc----CCCcce-eeecccccc--cceEEEEEcCCCchHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSFD-SDDDNEE----DGESTV-ELMQIGAER--TKNVLILMSDTGGGHR 171 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~-~~~~~~~~~--~kRVLILSAStGgGH~ 171 (280)
|+|.+. |+++.+.++++.+........-... ....... +-+... -+++-|-.. +..+-|++.+-...+.
T Consensus 258 R~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~lL~~ag~~~~~~~~l~l~~~~~~~~~~ 337 (466)
T cd00995 258 RQAISYAIDREEIIDAVLGGYGTPATSPLPPGSWGYYDKDLEPYEYDPEKAKELLAEAGYKDGKGLELTLLYNSDGPTRK 337 (466)
T ss_pred HHHHHHhcCHHHHHHHHHhCCcccccCCCCCcccccCCcccCCCCCCHHHHHHHHHHhCCCCCCceEEEEEeCCCCCcHH
Confidence 566665 8999999998766533332211100 0000000 000000 112233322 3345444443333789
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 172 ASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 172 qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
..|++|++.|++. +-.+++..+|
T Consensus 338 ~~a~~i~~~l~~~-Gi~v~~~~~~ 360 (466)
T cd00995 338 EIAEAIQAQLKEI-GIKVEIEPLD 360 (466)
T ss_pred HHHHHHHHHHHHc-CceEEEEEec
Confidence 9999999999874 3344444444
No 85
>PRK10307 putative glycosyl transferase; Provisional
Probab=54.02 E-value=41 Score=31.77 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=22.9
Q ss_pred ceEEEEEcC----CCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSD----TGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAS----tGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|||||+|.. .||.-. ....+.++|.+. +.+|.++-
T Consensus 1 mkIlii~~~~~P~~~g~~~-~~~~l~~~L~~~---G~~V~vit 39 (412)
T PRK10307 1 MKILVYGINYAPELTGIGK-YTGEMAEWLAAR---GHEVRVIT 39 (412)
T ss_pred CeEEEEecCCCCCccchhh-hHHHHHHHHHHC---CCeEEEEe
Confidence 579999843 244333 457899999775 44666654
No 86
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=51.97 E-value=13 Score=34.61 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCCCEEE-eCCcchhhHHH
Q 047228 248 KEVEAGLMEYKPDIII-SVHPLMQHIPL 274 (280)
Q Consensus 248 rkL~~lIee~kPDVII-STHPfpa~VlL 274 (280)
..|.+++++.++|+|| +||||+..+--
T Consensus 55 ~~l~~~l~~~~i~~VIDAtHPfA~~is~ 82 (256)
T TIGR00715 55 QELREFLKRHSIDILVDATHPFAAQITT 82 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCCHHHHHHHH
Confidence 4588999999999776 89999987643
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=51.44 E-value=65 Score=29.61 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=22.6
Q ss_pred ceEEEEEcCCC-chHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTG-GGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStG-gGH~qAAeAIaEAL~~~ 184 (280)
.+||.+..+++ ||-......|..+|.+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~ 30 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPAD 30 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhcccc
Confidence 57888888875 88889999999998654
No 88
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=50.25 E-value=1.7e+02 Score=25.34 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=33.1
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCC
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGW 203 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~ 203 (280)
.+..++++|+...-|+|=...++.+.+.+. .+++.+.-.|-+....|.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r~~~p~ 58 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFRQFHPD 58 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGGGGSTT
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHHHhccc
Confidence 445667888889999999999999999885 235566667877777775
No 89
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=49.95 E-value=13 Score=34.68 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 166 TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 166 tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+++||..+|+|+.+++.+++ ..++.+.|-+
T Consensus 87 vv~ghd~iArael~allrd~--~l~~vi~d~~ 116 (233)
T COG4271 87 VVSGHDAIARAELEALLRDW--KLEPVILDGL 116 (233)
T ss_pred EEeccHHHHHHHHHHHhhcc--ccceEEecCc
Confidence 36799999999999998774 5577777755
No 90
>cd08491 PBP2_NikA_DppA_OppA_like_12 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most
Probab=48.88 E-value=53 Score=31.98 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=24.4
Q ss_pred eEEEEEcCC-CchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDT-GGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSASt-GgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++.|++.+. ..++..+|++|++.|++. +-.+++..+|
T Consensus 316 ~l~i~~~~~~~~~~~~~a~~i~~~l~~~-GI~v~i~~~~ 353 (473)
T cd08491 316 EITLIGRNGQFPNATEVMEAIQAMLQQV-GLNVKLRMLE 353 (473)
T ss_pred eEEEeccCCCCcchHHHHHHHHHHHHHh-CeeEEEEEec
Confidence 566655443 467999999999999875 2234444444
No 91
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=48.68 E-value=23 Score=28.03 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHhhhcCCCeEEE
Q 047228 167 GGGHRASAEAIRDAFKIEFGDEYRIF 192 (280)
Q Consensus 167 GgGH~qAAeAIaEAL~~~~p~~veV~ 192 (280)
.+||...+-||.++|.++ +.+|.
T Consensus 8 t~Ghv~P~lala~~L~~r---Gh~V~ 30 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRR---GHEVR 30 (139)
T ss_dssp SHHHHHHHHHHHHHHHHT---T-EEE
T ss_pred ChhHHHHHHHHHHHHhcc---CCeEE
Confidence 379999999999999887 33555
No 92
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=48.29 E-value=34 Score=30.51 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=30.7
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
++|||+||+.++--.+|-.+-+++.+++.+. .+|++.|+.+..
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~~~----~~v~~~DL~~~~ 45 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQQL----EHVTVHDLYAHY 45 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHHcC----CceEEEECcccC
Confidence 5678999999987666655666677766442 267888988764
No 93
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=47.90 E-value=55 Score=29.77 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=19.7
Q ss_pred eEEEEEcCCC--chHHHHHHHHHHHHhh
Q 047228 158 NVLILMSDTG--GGHRASAEAIRDAFKI 183 (280)
Q Consensus 158 RVLILSAStG--gGH~qAAeAIaEAL~~ 183 (280)
||+|+..... ||-...+.++++.+.+
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~ 28 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPD 28 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCC
Confidence 5777775543 8889999999998853
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=47.80 E-value=65 Score=28.34 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=20.0
Q ss_pred eEEEEEcCC----CchHHHHHHHHHHHHhhh
Q 047228 158 NVLILMSDT----GGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 158 RVLILSASt----GgGH~qAAeAIaEAL~~~ 184 (280)
||||++.+. +||--..+..+.++|.+.
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~ 31 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKL 31 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhc
Confidence 577777543 467777789999999775
No 95
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=47.33 E-value=21 Score=32.82 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCCCCCCcCCC-------cceeeecccccc---------cceEEEEEcCCCchHHH
Q 047228 109 TEKVLQRVYGNHSTSSSSNLGCSFDSDDDNEEDGE-------STVELMQIGAER---------TKNVLILMSDTGGGHRA 172 (280)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------~kRVLILSAStGgGH~q 172 (280)
++++.+.++++.+..................+... ..-.|.+.|-.. ...++++...-..-+..
T Consensus 230 r~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (374)
T PF00496_consen 230 REAIVKNIFGGYATPANSPVPPSSPGYDDSFDPEYGEYDPEKARELLEKAGYKKSDGGGWRKDPLPLIILYTSDDPIWKA 309 (374)
T ss_dssp HHHHHHHTTTTSCEEESSSSTTTSTTGTTTSSHHHHHHHHHHHHHHHHHTTHEESTTSEEEETEEEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhhccccccccccccccccccccccccccCCHHHHHHhHHhhhhhcccccccccccccccccccccccchHH
Confidence 78888888888776544444333222222111100 000111222222 22477777888899999
Q ss_pred HHHHHHHHHhhhcCCCeEEEE
Q 047228 173 SAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 173 AAeAIaEAL~~~~p~~veV~I 193 (280)
+|++|++.|++. +++|.+
T Consensus 310 ~a~~l~~~l~~~---Gi~v~i 327 (374)
T PF00496_consen 310 IAEALQEQLKKI---GIKVEI 327 (374)
T ss_dssp HHHHHHHHHHHT---TEEEEE
T ss_pred HHHHHHHHHhhc---ceeEEE
Confidence 999999999874 455544
No 96
>cd08517 PBP2_NikA_DppA_OppA_like_13 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=46.27 E-value=37 Score=32.70 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=23.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++-|++.+.+..+...|++|++.|++. +-.+++..+|
T Consensus 335 ~l~l~~~~~~~~~~~~a~~i~~~l~~i-Gi~v~i~~~~ 371 (480)
T cd08517 335 KLRLDPLPYGEFWKRTAEYVKQALKEV-GIDVELRSQD 371 (480)
T ss_pred EEEEEecCCCchHHHHHHHHHHHHHHc-CCEEEEEEec
Confidence 455555554555789999999999764 3344444444
No 97
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=45.40 E-value=53 Score=30.93 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=53.7
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCC
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPK 232 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~ 232 (280)
+++++||||+--+ +-|=.--+-.+-++|++.+| ++++.++ ..+. +..+++..|..+.++......
T Consensus 2 ~~~~~~ILii~~~-~iGD~vl~~P~l~~Lk~~~P-~a~I~~l-----~~~~--------~~~l~~~~P~id~vi~~~~~~ 66 (352)
T PRK10422 2 DKPFRRILIIKMR-FHGDMLLTTPVISSLKKNYP-DAKIDVL-----LYQD--------TIPILSENPEINALYGIKNKK 66 (352)
T ss_pred CCCCceEEEEEec-ccCceeeHHHHHHHHHHHCC-CCeEEEE-----eccC--------hHHHhccCCCceEEEEecccc
Confidence 3567889998854 34556667777778877775 5566543 1222 233445555333222111110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchh
Q 047228 233 WIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQ 270 (280)
Q Consensus 233 ~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa 270 (280)
. .... ......++.+.|++.++|++|..+....
T Consensus 67 ~--~~~~---~~~~~~~l~~~lr~~~yD~vidl~~~~~ 99 (352)
T PRK10422 67 A--GASE---KIKNFFSLIKVLRANKYDLIVNLTDQWM 99 (352)
T ss_pred c--cHHH---HHHHHHHHHHHHhhCCCCEEEEcccchH
Confidence 0 0000 0112235667788999999999886543
No 98
>cd08508 PBP2_NikA_DppA_OppA_like_1 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=45.38 E-value=73 Score=31.01 Aligned_cols=34 Identities=9% Similarity=0.210 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
...+-|.+. .+..+...|++|++.|++. +++|.+
T Consensus 325 g~~l~~~~~-~~~~~~~~a~~l~~~l~~~---Gi~v~~ 358 (470)
T cd08508 325 GLTLTFLVS-PAAGQQSIMQVVQAQLAEA---GINLEI 358 (470)
T ss_pred CceEEEEec-CCchHHHHHHHHHHHHHhc---CcEEEE
Confidence 345555544 4678999999999999764 445443
No 99
>PRK07206 hypothetical protein; Provisional
Probab=45.33 E-value=83 Score=30.14 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=18.3
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhH
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHI 272 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~V 272 (280)
..+.+.+++++||.||++.-.....
T Consensus 60 ~~l~~~~~~~~~d~vi~~~e~~~~~ 84 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGAESGVEL 84 (416)
T ss_pred HHHHHHHHHcCCCEEEECCCccHHH
Confidence 4667778899999999876544433
No 100
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=44.68 E-value=48 Score=32.35 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=55.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCC----CchhhHHH
Q 047228 164 SDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSP----KWIHSCYL 239 (280)
Q Consensus 164 AStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~----~~~~s~l~ 239 (280)
.|=|.|=+..|-||.++|.++.+ +.+|....+.-.- ++|. -+..|.++-++..... ......+.
T Consensus 3 ~snghged~~a~ai~~~l~~~~~-~~~v~~~p~vG~~---------~~~e--~~~ip~~g~~~~~~sgg~~~~~~~~~~~ 70 (396)
T TIGR03492 3 LSNGHGEDLIAARIAKALLQLSP-DLNLEALPLVGEG---------RAYQ--NLGIPIIGPTKELPSGGFSYQSLRGLLR 70 (396)
T ss_pred CCCCchHHHHHHHHHHHHHhhCC-CCCeEEeCcccCC---------HHHh--hCCCceeCCCCCCCCCCccCCCHHHHHH
Confidence 45699999999999999988754 6677644333222 2232 2223544411111111 11111112
Q ss_pred HHHHHH--HHHHHHHHHhhh--CCCEEEeCCcchhhHHHHhh
Q 047228 240 AAMAAY--YAKEVEAGLMEY--KPDIIISVHPLMQHIPLWVL 277 (280)
Q Consensus 240 ~~l~~l--~~rkL~~lIee~--kPDVIISTHPfpa~VlL~vL 277 (280)
.....+ ...+-...+++. +||+||+|=-+..-+++|.+
T Consensus 71 ~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~ 112 (396)
T TIGR03492 71 DLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLS 112 (396)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHc
Confidence 222211 223556678888 99999999887755555543
No 101
>PRK12359 flavodoxin FldB; Provisional
Probab=44.03 E-value=41 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
||++|++.|..|==..+|++|++++.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg 26 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG 26 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC
Confidence 57999998887777889999999883
No 102
>PRK07116 flavodoxin; Provisional
Probab=43.78 E-value=29 Score=29.29 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
|||+||++.|--|.=..+|++|++.+..
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~ 29 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGA 29 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcC
Confidence 6789999987544446779999999853
No 103
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=43.64 E-value=23 Score=39.24 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhCCCEEEeCC
Q 047228 247 AKEVEAGLMEYKPDIIISVH 266 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIISTH 266 (280)
.+.+.+++++++||.||.+.
T Consensus 619 ~e~vl~I~~~e~~dgVI~~~ 638 (1068)
T PRK12815 619 LEDVLNVAEAENIKGVIVQF 638 (1068)
T ss_pred HHHHHHHHhhcCCCEEEEec
Confidence 35788899999999999753
No 104
>PRK06242 flavodoxin; Provisional
Probab=42.48 E-value=27 Score=28.47 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceEEEEEcCC-CchHHHHHHHHHHHHh
Q 047228 157 KNVLILMSDT-GGGHRASAEAIRDAFK 182 (280)
Q Consensus 157 kRVLILSASt-GgGH~qAAeAIaEAL~ 182 (280)
||++|++.|. .|-=..+|++|++++.
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~ 27 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD 27 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 5699999997 5666788999999883
No 105
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=42.37 E-value=1.6e+02 Score=27.92 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHHHHHHhhhCCCEEEeCCcc
Q 047228 248 KEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPf 268 (280)
+.+.++++++++|+|+++.-.
T Consensus 65 ~~l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 65 DALRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred HHHHHHHHHhCCCEEEEeeCc
Confidence 356667788999999988644
No 106
>PLN02735 carbamoyl-phosphate synthase
Probab=42.20 E-value=71 Score=35.87 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=27.6
Q ss_pred cccceEEEEEcCC---C--chHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 154 ERTKNVLILMSDT---G--GGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 154 ~~~kRVLILSASt---G--gGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+.+|||||+-+.- | +=|+.++..+..+|++. +++|..+|.-
T Consensus 21 ~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~---G~~Vi~vd~n 66 (1102)
T PLN02735 21 TDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEE---GYEVVLINSN 66 (1102)
T ss_pred cCCCEEEEECCCccccccceeecchHHHHHHHHHHc---CCEEEEEeCC
Confidence 3468999985432 2 12445567788888765 6799999854
No 107
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=41.77 E-value=61 Score=27.87 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=33.1
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.++.|.|.+.+-|.|=...|..|+.++.+. +.+|.++|.-
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~---G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQA---GYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 377788888889999999999999999765 4578888874
No 108
>PLN02735 carbamoyl-phosphate synthase
Probab=41.44 E-value=16 Score=40.80 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhCCCEEEeCC
Q 047228 247 AKEVEAGLMEYKPDIIISVH 266 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIISTH 266 (280)
.+.+.+++++++||.||.++
T Consensus 638 ~e~vl~i~~~e~~d~Vi~~~ 657 (1102)
T PLN02735 638 VEDVLNVIDLERPDGIIVQF 657 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 57889999999999999765
No 109
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.40 E-value=60 Score=27.65 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=28.8
Q ss_pred eEEEEEcCCC--chHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 158 NVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 158 RVLILSAStG--gGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
|||++++|.- +=-...|+++.+.+.+.. +.+++++|+.+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~--g~ev~~idL~~~ 42 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARL--GISPRTIDLADL 42 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhc--CCeEEEEEhhhc
Confidence 6899998873 444557888888876542 468889997653
No 110
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.33 E-value=2.4e+02 Score=26.71 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=63.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIH 235 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~ 235 (280)
||||||+-.+ +-|=.--+..+-..|.+.+| ++++.++ ..+ .+..+++..|--+.++......+.
T Consensus 1 ~~kIliir~~-~iGD~vlt~p~~~~lk~~~P-~a~i~~~-----~~~--------~~~~i~~~~p~I~~vi~~~~~~~~- 64 (334)
T COG0859 1 MMKILVIRLS-KLGDVVLTLPLLRTLKKAYP-NAKIDVL-----VPK--------GFAPILKLNPEIDKVIIIDKKKKG- 64 (334)
T ss_pred CceEEEEecc-chhHHHhHHHHHHHHHHHCC-CCEEEEE-----ecc--------chHHHHhcChHhhhhccccccccc-
Confidence 5789999988 77888888889999988885 5555432 122 244556666744444332211111
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHH
Q 047228 236 SCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLW 275 (280)
Q Consensus 236 s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~ 275 (280)
....-..+|.+.|++.+.|+||..+-..-..++-
T Consensus 65 ------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~ 98 (334)
T COG0859 65 ------LGLKERLALLRTLRKERYDAVIDLQGLLKSALLA 98 (334)
T ss_pred ------cchHHHHHHHHHhhccCCCEEEECcccHHHHHHH
Confidence 1122346888999999999999988766555443
No 111
>cd08513 PBP2_thermophilic_Hb8_like The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold. This family includes the substrate-binding domain of an ABC-type oligopeptide-binding protein Hb8 from Thermus thermophilius and its closest homologs from other bacteria. The structural topology of this substrate-binding domain is similar to those of DppA from Escherichia coli and OppA from Salmonella typhimurium, and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporter
Probab=41.02 E-value=79 Score=30.63 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+-+++.+-...+.++|++|++.|++. +-.+++..+|
T Consensus 339 l~l~~~~~~~~~~~~a~~i~~~l~~i-Gi~v~~~~~~ 374 (482)
T cd08513 339 FTLLTTSGNAVRERVAELIQQQLAKI-GIDVEIENVP 374 (482)
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHHc-CCEEEEeeCC
Confidence 33344332267899999999999874 3233444344
No 112
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=40.83 E-value=62 Score=26.83 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCchHH-HHHHHHHHHHhhh
Q 047228 156 TKNVLILMSDTGGGHR-ASAEAIRDAFKIE 184 (280)
Q Consensus 156 ~kRVLILSAStGgGH~-qAAeAIaEAL~~~ 184 (280)
|+-++|.++++|..|. .||++|+++-.+.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~ 32 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLE 32 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHC
Confidence 4444455588999996 6889999998776
No 113
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=40.14 E-value=47 Score=28.31 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
+|+|++.|..|.=..+|++|++.|..
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~ 26 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE 26 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC
Confidence 58999999666667789999999853
No 114
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=39.86 E-value=2.5e+02 Score=28.66 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=28.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
|||.++...|.=|...-++|.++|.++ +.++.+..-
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p 57 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKP 57 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEec
Confidence 588888889999999999999999887 455454433
No 115
>cd08516 PBP2_NikA_DppA_OppA_like_11 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=39.86 E-value=98 Score=29.61 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=44.6
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcccc---CCCCCC---CcCCCcce-eeecccccccceEEEEEcCCCchHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSF---DSDDDN---EEDGESTV-ELMQIGAERTKNVLILMSDTGGGHRA 172 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~-~~~~~~~~~~kRVLILSAStGgGH~q 172 (280)
|+|.+. |+.+.+.++++.+........-.+ ++.... .-+-+.-- -+++-|-+...++-|++.+-..-+..
T Consensus 254 R~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~lL~~aG~~~g~~l~l~~~~~~~~~~~ 333 (457)
T cd08516 254 RQAIAYAIDRDAIVDAAFFGRGTPLGGLPSPAGSPAYDPDDAPCYKYDPEKAKALLAEAGYPNGFDFTILVTSQYGMHVD 333 (457)
T ss_pred HHHHHHhcCHHHHHHHHhcCCcEECCCCCCCCcccccChhhcccCCCCHHHHHHHHHhcCCCCCceEEEEeCCCCccHHH
Confidence 565544 888999998877643322211111 110000 00000000 12233433334555554332246899
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEe
Q 047228 173 SAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 173 AAeAIaEAL~~~~p~~veV~IVD 195 (280)
.|+.|++.|++. +-.++++.+|
T Consensus 334 ~a~~i~~~l~~~-Gi~v~~~~~~ 355 (457)
T cd08516 334 TAQVIQAQLAAI-GINVEIELVE 355 (457)
T ss_pred HHHHHHHHHHHc-CceEEEEEec
Confidence 999999999875 3233444444
No 116
>PRK15413 glutathione ABC transporter substrate-binding protein GsiB; Provisional
Probab=39.62 E-value=58 Score=32.29 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCc--cccCCCCCC-CcCCCc-ceeeecccccccceEEEEEcCCCchHHHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLG--CSFDSDDDN-EEDGES-TVELMQIGAERTKNVLILMSDTGGGHRASAE 175 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~~kRVLILSAStGgGH~qAAe 175 (280)
|+|.+. |+++.+.++++.+....+..- ..++..... +-|-|. ---|.+-|-....++.+++.+-.....+.|+
T Consensus 286 RqAi~~AiDr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~D~ekAk~lL~~aG~~~g~~~~~~~~~~~~~~~~~a~ 365 (512)
T PRK15413 286 REALNYAINRQALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPAKARELLKEAGYPNGFSTTLWSSHNHSTAQKVLQ 365 (512)
T ss_pred HHHHHHhcCHHHHHHHHhcCCcccccCCCCCCcccccccCCCCCCHHHHHHHHHHcCCCCCeeEEEEecCCCccHHHHHH
Confidence 466665 889999998877653333221 111111000 000000 0112233333334566655443456789999
Q ss_pred HHHHHHhhhcCCCeEEEEEe
Q 047228 176 AIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 176 AIaEAL~~~~p~~veV~IVD 195 (280)
.|++.|++. +-.++++.+|
T Consensus 366 ~iq~~l~~i-GI~v~i~~~d 384 (512)
T PRK15413 366 FTQQQLAQV-GIKAQVTAMD 384 (512)
T ss_pred HHHHHHHhc-CcEEEEEEec
Confidence 999999875 3344444455
No 117
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=39.29 E-value=49 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 253 GLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 253 lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
++++.+||+|||.....+..+++++++
T Consensus 63 ~l~~~~pdaii~~~~~~a~~~~~~l~~ 89 (160)
T PF13377_consen 63 WLRRLRPDAIICSNDRLALGVLRALRE 89 (160)
T ss_dssp HHHTCSSSEEEESSHHHHHHHHHHHHH
T ss_pred HHhcCCCcEEEEcCHHHHHHHHHHHHH
Confidence 344448999999998888888888765
No 118
>cd08499 PBP2_Ylib_like The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling
Probab=38.71 E-value=1.1e+02 Score=29.73 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcccc--CCCCCC--CcCCCccee-eecccccccceEEEEEcCCCchHHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSF--DSDDDN--EEDGESTVE-LMQIGAERTKNVLILMSDTGGGHRASA 174 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~-~~~~~~~~~kRVLILSAStGgGH~qAA 174 (280)
|+|.+. |+.+.+.++++.+....+...-.. ++.... +-+-|.--+ |.+.|-+...++-|++ ..|..+..+|
T Consensus 257 R~Ai~~aidr~~i~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~d~~~A~~lL~eaG~~~~~~l~l~~-~~~~~~~~~a 335 (474)
T cd08499 257 RQAINYAIDKEAIIKGILNGYGTPADSPIAPGVFGYSEQVGPYEYDPEKAKELLAEAGYPDGFETTLWT-NDNRERIKIA 335 (474)
T ss_pred HHHHHHhcCHHHHHHHHhcCCceeccCCcCCCccCcCCCccCCCCCHHHHHHHHHHcCCCCCceEEEEe-cCCCchhHHH
Confidence 466555 888999998876543332211000 110000 000000001 1223332233444443 3455788999
Q ss_pred HHHHHHHhhhcCCCeEEEEEe
Q 047228 175 EAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 175 eAIaEAL~~~~p~~veV~IVD 195 (280)
++|++.|++. +-.+++..+|
T Consensus 336 ~~i~~~l~~~-GI~v~i~~~~ 355 (474)
T cd08499 336 EFIQQQLAQI-GIDVEIEVME 355 (474)
T ss_pred HHHHHHHHHc-CceEEEEecc
Confidence 9999999874 3233444444
No 119
>cd08494 PBP2_NikA_DppA_OppA_like_6 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=37.45 E-value=94 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.031 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 166 TGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 166 tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
.+..+..+|++|++.|++. +-.+++..+|.
T Consensus 324 ~~~~~~~~a~~i~~~l~~~-GI~v~i~~~~~ 353 (448)
T cd08494 324 PLPYARRIGEIIASQLAEV-GITVKIEVVEP 353 (448)
T ss_pred CCcchhHHHHHHHHHHHhc-CcEEEEEEeeH
Confidence 3456899999999999874 33444444543
No 120
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.36 E-value=1.4e+02 Score=26.31 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=55.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhHHHHHHH
Q 047228 164 SDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMA 243 (280)
Q Consensus 164 AStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~l~~~l~ 243 (280)
+.+|.-+.++++.+.+.|.+..++.-++-++-.-... + ....-.++|...++..+-+........ .+. .
T Consensus 99 ~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~-~-~~~~R~~gf~~~~~~~~~~~~~~~~~~-~~~---~----- 167 (272)
T cd06313 99 SFLAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGH-T-GAQGRAQGFNDVIKKYPDIEVVDEQPA-NWD---V----- 167 (272)
T ss_pred EEECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCC-c-chhHHHHHHHHHHHhCCCCEEEeccCC-CCC---H-----
Confidence 3467778888888888887663222244433211111 1 112234556655554320000000000 010 0
Q ss_pred HHHHHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 244 AYYAKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 244 ~l~~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.-..+.+.+++++. .||+|+|+.-..+..++++++.
T Consensus 168 ~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~ 204 (272)
T cd06313 168 SKAARIWETWLTKYPQLDGAFCHNDSMALAAYQIMKA 204 (272)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHH
Confidence 11335677777664 5899999988888777887764
No 121
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=37.05 E-value=34 Score=30.72 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
||||+|++=.||-|.+-|+-|.+.+
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~ 25 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS 25 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc
Confidence 6899999999999999999999998
No 122
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=36.99 E-value=24 Score=27.25 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHH--hhhCCCEEEeCCcchhhHHHHhh
Q 047228 248 KEVEAGL--MEYKPDIIISVHPLMQHIPLWVL 277 (280)
Q Consensus 248 rkL~~lI--ee~kPDVIISTHPfpa~VlL~vL 277 (280)
..+.+++ ++.+||+|.+..+.. ..+...+
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~~-~~~~~~~ 91 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPTA-GLVAALA 91 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHHH-HHHHHHH
T ss_pred HHHHHHHhhhccCCeEEEecccch-hHHHHHH
Confidence 4667777 999999999999653 3333333
No 123
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=36.93 E-value=73 Score=33.05 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=48.5
Q ss_pred HHHHHHHHhHH---H-HHHHHHHhcCCCchhhHHHH-----------------HHHHHHHHHHHHHHhhhCCCEEEeCCc
Q 047228 209 ERSYKFMVKHV---Q-LWKVAFHSTSPKWIHSCYLA-----------------AMAAYYAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 209 ~~~Yl~~Vr~~---P-LY~~~Y~~T~~~~~~s~l~~-----------------~l~~l~~rkL~~lIee~kPDVIISTHP 267 (280)
...+..|.++. | .|..+|...++.-++.++++ -+..-+.++|.++.-+..|++++..-|
T Consensus 298 ngLF~Lm~khNleYP~FY~KLY~Ll~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vip 377 (505)
T KOG2154|consen 298 NGLFILMTKHNLEYPDFYEKLYALLNPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIP 377 (505)
T ss_pred hHHHHHHHHcCCCCchHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHH
Confidence 66777888887 7 89999988876544333321 122345689999999999999999988
Q ss_pred chhhHHHH
Q 047228 268 LMQHIPLW 275 (280)
Q Consensus 268 fpa~VlL~ 275 (280)
|...++.|
T Consensus 378 fI~Nll~r 385 (505)
T KOG2154|consen 378 FICNLLRR 385 (505)
T ss_pred HHHHHHHh
Confidence 88777654
No 124
>cd08496 PBP2_NikA_DppA_OppA_like_9 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA can bind peptides of a wide range of lengths (2-35 amino-acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most
Probab=36.42 E-value=71 Score=30.80 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=46.4
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcccc--CCCCCC---CcCCCcc-eeeecccccccceEEEEEcCCCchHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSF--DSDDDN---EEDGEST-VELMQIGAERTKNVLILMSDTGGGHRAS 173 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~-~~~~~~~~~~~kRVLILSAStGgGH~qA 173 (280)
|+|.+. |+.+.+.++++.+.-..+...-.. +..... +-+-+.. --|.+-|-+....+-|++.+ ..+...
T Consensus 253 RkAl~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~g~~l~i~~~~--~~~~~~ 330 (454)
T cd08496 253 RQAINYAIDRKAFVDALLFGLGEPASQPFPPGSWAYDPSLENTYPYDPEKAKELLAEAGYPNGFSLTIPTGA--QNADTL 330 (454)
T ss_pred HHHHHhhcCHHHHHHHHhcCCCccccCCCCCCCccccccccccCCCCHHHHHHHHHHcCCCCCceEEEEecC--CchhHH
Confidence 676555 888999999876653333221111 110000 0000000 00122233223456666654 689999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEec
Q 047228 174 AEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 174 AeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|++|++.|++. +-.+++..+|.
T Consensus 331 a~~i~~~l~~i-Gi~v~~~~~~~ 352 (454)
T cd08496 331 AEIVQQQLAKV-GIKVTIKPLTG 352 (454)
T ss_pred HHHHHHHHHHc-CceEEEEEech
Confidence 99999999774 33444444443
No 125
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=35.80 E-value=98 Score=27.39 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=27.9
Q ss_pred ceEEEEEcCCC-chH-HHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTG-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStG-gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
||||++++|.- ++. .+.++++.+.+.+. +.+++++|+.+
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~---g~ev~~idL~~ 41 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGL---GVEVYHWNLQN 41 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhC---CCEEEEEEccC
Confidence 47999998864 333 44677888877654 56899999764
No 126
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.64 E-value=39 Score=33.10 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.3
Q ss_pred ceEEEEE---cCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILM---SDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILS---AStGgGH~qAAeAIaEAL~~~ 184 (280)
|||+|++ .++|+||..-...|+++++++
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~ 31 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR 31 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc
Confidence 5799998 459999999999999999776
No 127
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=35.48 E-value=70 Score=26.97 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=26.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccccc
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYA 201 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~is 201 (280)
++.+++++|+.|. .+|++|++.+.+.. -.+++..++-++...
T Consensus 24 ~~~Ll~SDT~~G~-~~a~il~~~l~~~g-~~v~~~~i~~l~~~~ 65 (136)
T PF09651_consen 24 EVVLLHSDTPDGR-LCAEILKEYLEEKG-INVEVVEIEGLQTED 65 (136)
T ss_dssp EEEEEEESSHHHH-HHHHHHHHHHHHTT--EEEEEE---E----
T ss_pred EEEEEeCCCHHHH-HHHHHHHHHHHHcC-CeEEEEEeeeecccc
Confidence 7899999999996 57899999998853 245555444444443
No 128
>cd08511 PBP2_NikA_DppA_OppA_like_5 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is mos
Probab=35.30 E-value=80 Score=30.42 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=43.5
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCc--cccCCCCCC--CcCCCccee-eecccccccceEEEEEcCCCchHHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLG--CSFDSDDDN--EEDGESTVE-LMQIGAERTKNVLILMSDTGGGHRASA 174 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~-~~~~~~~~~kRVLILSAStGgGH~qAA 174 (280)
|+|.+. |+++++.++++++....+... +..++.... +-+-|.--+ +++.|-+. .++-|++ +-+..+..+|
T Consensus 258 RkAi~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~aG~~~-~~l~i~~-~~~~~~~~~a 335 (467)
T cd08511 258 RQALALAIDREAINQVVFNGTFKPANQPFPPGSPYYGKSLPVPGRDPAKAKALLAEAGVPT-VTFELTT-ANTPTGRQLA 335 (467)
T ss_pred HHHHHhhcCHHHHHHHHhcCceeECccCCCCCCCCcCCCCCCCCCCHHHHHHHHHHcCCCC-ceEEEEe-cCCCchhHHH
Confidence 676555 889999998876543222211 111111000 000000001 11222221 3555555 4467889999
Q ss_pred HHHHHHHhhhcCCCeEEEE
Q 047228 175 EAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 175 eAIaEAL~~~~p~~veV~I 193 (280)
++|++.|++. ++++++
T Consensus 336 ~~i~~~l~~~---Gi~v~i 351 (467)
T cd08511 336 QVIQAMAAEA---GFTVKL 351 (467)
T ss_pred HHHHHHHHhc---CcEeEE
Confidence 9999999774 345544
No 129
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.97 E-value=1.6e+02 Score=22.85 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=26.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 161 ILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 161 ILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+++..-+..|.-....|+..|++. +.+|..+|...
T Consensus 4 ~~~~~~~~~~~lGl~~la~~l~~~---G~~v~~~d~~~ 38 (121)
T PF02310_consen 4 VLACVPGEVHPLGLLYLAAYLRKA---GHEVDILDANV 38 (121)
T ss_dssp EEEEBTTSSTSHHHHHHHHHHHHT---TBEEEEEESSB
T ss_pred EEEeeCCcchhHHHHHHHHHHHHC---CCeEEEECCCC
Confidence 355566778888888899988764 67888888653
No 130
>cd08514 PBP2_AppA_like The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains correspondin
Probab=34.29 E-value=1.1e+02 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCC-chHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 165 DTG-GGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 165 StG-gGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
..| ..+.++|++|++.|++. +-.++++.+|.
T Consensus 346 ~~~~~~~~~~a~~i~~~l~~~-Gi~v~~~~~~~ 377 (483)
T cd08514 346 NQGNPVREQAATIIQQQLKEI-GIDVKIRVLEW 377 (483)
T ss_pred cCCCchHHHHHHHHHHHHHhc-CcEEEEEEecH
Confidence 344 67899999999999874 33444444443
No 131
>cd08498 PBP2_NikA_DppA_OppA_like_2 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=33.27 E-value=1.3e+02 Score=29.28 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=22.5
Q ss_pred ceEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
..+-|.+.+-. ..+.++|+.|++.|++. +-.+++..+|
T Consensus 330 ~~l~l~~~~~~~~~~~~~a~~i~~~l~~~-Gi~v~i~~~~ 368 (481)
T cd08498 330 FELTLHCPNDRYVNDEAIAQAVAGMLARI-GIKVNLETMP 368 (481)
T ss_pred ceEEEEEcCCCCCcchHHHHHHHHHHHHh-CceEEEEEec
Confidence 34555443321 35789999999999875 2233444344
No 132
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=33.26 E-value=3.9e+02 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=24.3
Q ss_pred eEEEEEcC-CCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 158 NVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 158 RVLILSAS-tGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
|||+++.+ -|||=......+.+++.+. +.++.+
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~---g~~v~~ 34 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDL---GVDTRW 34 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHc---CCCceE
Confidence 47777654 6788889999999999875 345544
No 133
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=33.17 E-value=60 Score=33.97 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=31.0
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
..|++|+||++|-.|-=...|+.|++.+.+. ++++.+.|.-+
T Consensus 59 ~~~~~v~IlygSqTGnae~lA~~la~~l~~~---g~~~~v~~~~d 100 (600)
T PRK10953 59 AEMPGITLISASQTGNARRVAEQLRDDLLAA---KLNVNLVNAGD 100 (600)
T ss_pred CCCCeEEEEEEcCchHHHHHHHHHHHHHHhC---CCCcEEechHh
Confidence 4578899999998777788899999998764 34455555433
No 134
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=32.95 E-value=57 Score=32.37 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=39.2
Q ss_pred CCCccccCC-CCCCCcCC-Ccceeee---cccccccceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 126 SNLGCSFDS-DDDNEEDG-ESTVELM---QIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~-~~~~~~~---~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
+-.++.|-+ +..|.++. +.-|+-. ..|....+++|.|....|+|=...|++|+++++..
T Consensus 42 ~~~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 42 GIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred ceeeccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345555555 55553322 2222211 23445567899999999999999999999999763
No 135
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=32.81 E-value=61 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.8
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
.++++++++..+|+|=...|.+|++.+.
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLN 29 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCC
Confidence 3457999999999999999999999874
No 136
>PRK05723 flavodoxin; Provisional
Probab=32.75 E-value=83 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
++|.|+++|..|==...|+.|++.+.+.
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~ 28 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAA 28 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHC
Confidence 4799999998888888999999999754
No 137
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=32.60 E-value=90 Score=34.70 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=26.1
Q ss_pred ccceEEEEEcC---CCchH--HHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSD---TGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAS---tGgGH--~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
..+|||||-+. +|.|. +-++-.+.+++++. ++++.++|.-
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~---G~~vI~v~~n 597 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREL---GYETIMINYN 597 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhC---CCEEEEEecC
Confidence 34789998644 34444 34455556777665 6789999864
No 138
>cd08507 PBP2_SgrR_like The C-terminal solute-binding domain of DNA-binding transcriptional regulator SgrR is related to the ABC-type oligopeptide-binding proteins and contains the type 2 periplasmic-binding fold. A novel family of SgrR transcriptional regulator contains a two-domain structure with an N terminal DNA-binding domain of the winged helix family and a C-terminal solute-binding domain. The C-terminal domain shows strong homology with the ABC-type oligopeptide-binding protein family, a member of the type 2 periplasmic-binding fold protein (PBP2) superfamily that also includes the C-terminal substrate-binding domain of LysR-type transcriptional regulators. SgrR (SugaR transport-related Regulator) is negatively autoregulated and activates transcription of divergent operon SgrS, which encodes a small RNA required for recovery from glucose-phosphate stress. Hence, the small RNA SgrS and SgrR, the transcription factor that controls sgrS expression, are both required for recovery f
Probab=32.59 E-value=91 Score=30.27 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=43.1
Q ss_pred CCccch---HHHHHHHHhcCC---CCCCCCCCccccCCCCCCCcCCCcceeeecccccccceEEEEEcCCCchHHHHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNH---STSSSSNLGCSFDSDDDNEEDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEA 176 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kRVLILSAStGgGH~qAAeA 176 (280)
|+|.+. ++++.+.++|+. .....+.... ++ -+...-.+.+-|-.. .++-|.+.+ +..+...|+.
T Consensus 247 RqAi~~aiDr~~i~~~~~~~~~~~~~~a~~~~p~--~d------~~~Ak~lL~eaG~~~-~~~~l~~~~-~~~~~~~a~~ 316 (448)
T cd08507 247 RRALSELLDPEALIQHLGGERQRGWFPAYGLLPE--WP------REKIRRLLKESEYPG-EELTLATYN-QHPHREDAKW 316 (448)
T ss_pred HHHHHHhcCHHHHHHHhhcccccceeEcCCCCCc--cC------HHHHHhhccccCCCC-ceEEEEEcC-CCchHHHHHH
Confidence 565544 788888888875 3322222211 11 000111122222222 234444422 3338899999
Q ss_pred HHHHHhhhcCCCeEEEEEecccc
Q 047228 177 IRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 177 IaEAL~~~~p~~veV~IVD~Le~ 199 (280)
|++.+++. +-.+++..+|.-++
T Consensus 317 l~~~l~~~-Gi~v~l~~~~~~~~ 338 (448)
T cd08507 317 IQQRLAKH-GIRLEIHILSYEEL 338 (448)
T ss_pred HHHHHHHc-CcEEEEEeecccch
Confidence 99999875 33455555555333
No 139
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=32.25 E-value=3.2e+02 Score=24.69 Aligned_cols=52 Identities=4% Similarity=0.041 Sum_probs=34.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHV 219 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~ 219 (280)
.++.||..+|+|=..+|+.+++.+. +.+ +|......-.+.. ...|..+++.+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg------~~v--idaD~i~~~l~~~--~~~~~~i~~~f 58 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLN------LNV--VCADTISREITKK--PSVIKKIAEKF 58 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcC------CeE--EeccHHHHHHHCc--hHHHHHHHHHh
Confidence 4789999999999999999998652 233 4543333222221 34677777776
No 140
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=31.94 E-value=1.6e+02 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.192 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 168 GGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 168 gGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
..+..+|++|++.|++. +-.+++..+|.
T Consensus 332 ~~~~~~a~~i~~~l~~~-Gi~v~~~~~~~ 359 (470)
T cd08490 332 PELPPIAEAIQAQLKKI-GIDVEIRVVEY 359 (470)
T ss_pred CchHHHHHHHHHHHHHc-CceEEEEEeeh
Confidence 67899999999999874 33444444554
No 141
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.76 E-value=91 Score=29.24 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=33.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
||.|.|.+..=|-|=.+.+.+|+-+|.+. +-.|..+|+-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~---G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARL---GESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCC
Confidence 67888888999999999999999999876 3367888864
No 142
>cd08515 PBP2_NikA_DppA_OppA_like_10 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=31.68 E-value=1.7e+02 Score=28.34 Aligned_cols=41 Identities=17% Similarity=0.032 Sum_probs=24.4
Q ss_pred cccccccceEEEEEcC-CCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 150 QIGAERTKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 150 ~~~~~~~kRVLILSAS-tGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
+-|-....++-|.+.. .+..+...|++|++.|++. +++|.+
T Consensus 317 ~aG~~~g~~l~l~~~~~~~~~~~~~a~~i~~~l~~~---Gi~v~i 358 (460)
T cd08515 317 EAGYPDGFEIDYYAYRGYYPNDRPVAEAIVGMWKAV---GINAEL 358 (460)
T ss_pred HcCCCCCceEEEEecCCCCCchHHHHHHHHHHHHHh---CceEEE
Confidence 3343333445444332 2356899999999999874 344443
No 143
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=31.52 E-value=41 Score=32.25 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.1
Q ss_pred HHHHHHHhhhCCCEEEeCCcchh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQ 270 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa 270 (280)
..+.+++++.+||+||.|-.+.+
T Consensus 40 ~~v~~~i~~~~PDvVIn~AAyt~ 62 (281)
T COG1091 40 DAVLEVIRETRPDVVINAAAYTA 62 (281)
T ss_pred HHHHHHHHhhCCCEEEECccccc
Confidence 46788999999999999977654
No 144
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=31.47 E-value=3.6e+02 Score=23.71 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++++++.-|.|=...|.+++..+.+. +..+.++|.-
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~---g~~~~l~~~d 36 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEE---GKKVLLVSTD 36 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEECC
Confidence 47889999999999999999999765 3467777753
No 145
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.40 E-value=47 Score=29.23 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=27.8
Q ss_pred eEEEEEcC-CCchHH---HHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 158 NVLILMSD-TGGGHR---ASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 158 RVLILSAS-tGgGH~---qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
||||++.. .|.=|. .+.++|++.+++. .+++|.+.|-.+..
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~--~~~~v~~~~~~~~~ 45 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES--EGFEVTVTEDPDDL 45 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT--TCEEEEECCSGGCT
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC--CCEEEEEEeCcccC
Confidence 79999988 454465 6778888888754 47788776654443
No 146
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=31.15 E-value=3.4e+02 Score=26.43 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 247 AKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
..+|.+++.+++||++||-+.-.+.-.+..|.
T Consensus 72 ~~~l~~~~~~~~pDv~is~~s~~a~~va~~lg 103 (335)
T PF04007_consen 72 QYKLLKLIKKFKPDVAISFGSPEAARVAFGLG 103 (335)
T ss_pred HHHHHHHHHhhCCCEEEecCcHHHHHHHHHhC
Confidence 34889999999999999988766664555553
No 147
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.15 E-value=70 Score=27.50 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=51.1
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH--HHHHHHHhcCCCchhhHHHHH
Q 047228 164 SDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ--LWKVAFHSTSPKWIHSCYLAA 241 (280)
Q Consensus 164 AStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P--LY~~~Y~~T~~~~~~s~l~~~ 241 (280)
..+|.=+.+|++.+.+.+.+. + .-++-.+..-... .....-.++|...++... .. ..+. ..+.
T Consensus 94 ~~v~~d~~~~g~~~~~~l~~~-g-~~~i~~i~~~~~~--~~~~~r~~gf~~~l~~~~~~~~-~~~~---~~~~------- 158 (264)
T cd01574 94 STVSVDQEGGARLATEHLLEL-G-HRTIAHVAGPEEW--LSARARLAGWRAALEAAGIAPP-PVLE---GDWS------- 158 (264)
T ss_pred CEEEeCcHHHHHHHHHHHHHC-C-CCEEEEEecCCcc--chHHHHHHHHHHHHHHCCCCcc-eeee---cCCC-------
Confidence 346666778888888888665 2 3245444321111 111233345554443211 00 0000 0000
Q ss_pred HHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 242 MAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 242 l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
..-..+.+.+++++..||+|+|+..-.+..+++++++
T Consensus 159 -~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~~~~ 195 (264)
T cd01574 159 -AESGYRAGRELLREGDPTAVFAANDQMALGVLRALHE 195 (264)
T ss_pred -HHHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 0112345666777666999999997777666777664
No 148
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=30.86 E-value=3.5e+02 Score=23.25 Aligned_cols=101 Identities=9% Similarity=-0.058 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH-HHHHHHHhcCCCchhhHHHHHHHH
Q 047228 166 TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ-LWKVAFHSTSPKWIHSCYLAAMAA 244 (280)
Q Consensus 166 tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P-LY~~~Y~~T~~~~~~s~l~~~l~~ 244 (280)
+|.-+.++++.+.+.|.+. + .-++-.+..- ........-.++|...++... -+...+........ .
T Consensus 97 V~~d~~~~~~~~~~~l~~~-G-~~~i~~i~~~--~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~---------~ 163 (269)
T cd06275 97 IQDNSEEGGYLATRHLIEL-G-HRRIGCITGP--LEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFEC---------E 163 (269)
T ss_pred EeeCcHHHHHHHHHHHHHC-C-CceEEEEeCC--CCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCCh---------H
Confidence 5666888888888888765 2 2244333211 111112223456666665432 11111100101000 1
Q ss_pred HHHHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 245 YYAKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 245 l~~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
-..+.+.+++++. +||+|+|+....+..++.++++
T Consensus 164 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 199 (269)
T cd06275 164 GGYEAMQRLLAQPKRPTAVFCGNDLMAMGALCAAQE 199 (269)
T ss_pred HHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHH
Confidence 1224566677665 6999999998888666777664
No 149
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.85 E-value=73 Score=29.06 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=31.8
Q ss_pred ccceEEEEEcCCCchHHH---HHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~q---AAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+++||.|++.+-..=|.. .+++|.+||++. +++|..+|..
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~---g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREA---GYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHC---CCEEEEEecC
Confidence 456899999777777888 999999999876 5677777654
No 150
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.68 E-value=88 Score=30.64 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
-+|+-+..|||=++.|++|++.+.+..+ -.+.+.+.-
T Consensus 31 t~Ivp~~~GGg~D~~aR~~~~~l~k~lg--~~v~V~N~p 67 (319)
T COG3181 31 TIIVPAAAGGGTDQTARALAESLSKELG--QPVVVDNKP 67 (319)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHHhC--CCEEEEecC
Confidence 4788999999999999999999988854 355555543
No 151
>cd08502 PBP2_NikA_DppA_OppA_like_16 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=30.63 E-value=1.1e+02 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=22.9
Q ss_pred eEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
++-|++ ..| .....+|++|++.|.+. +-.+++..+|.
T Consensus 333 ~l~l~~-~~~~~~~~~~a~~i~~~l~~i-GI~v~v~~~~~ 370 (472)
T cd08502 333 PIVILT-PTDYAYLYNAALVAAQQLKAA-GFNVDLQVMDW 370 (472)
T ss_pred eEEEEE-CCCCcchhhHHHHHHHHHHhc-CcEEEEEEech
Confidence 344444 334 56899999999999774 32344444443
No 152
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=30.62 E-value=83 Score=28.72 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=29.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|++|++..-|.|-...|.+++.++.+. +..|-++|.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~---g~~vLlvd~ 36 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQ---GKKVLLVST 36 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHC---CCCceEEeC
Confidence 588999999999999999999999765 335666665
No 153
>cd08493 PBP2_DppA_like The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their li
Probab=30.61 E-value=1.7e+02 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHhhh
Q 047228 168 GGHRASAEAIRDAFKIE 184 (280)
Q Consensus 168 gGH~qAAeAIaEAL~~~ 184 (280)
..+...|++|++.|++.
T Consensus 350 ~~~~~~a~~i~~~l~~~ 366 (482)
T cd08493 350 PNPKKMAELIQADLAKV 366 (482)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 57899999999999774
No 154
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=30.47 E-value=71 Score=33.24 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=30.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+++|+||++|-.|-=...|+.|++.+.+. ++++.+.|+-+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~---g~~~~v~~~~d 97 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAA---GFSVRLSSADD 97 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhC---CCccEEechHH
Confidence 57899999997777788999999999764 34555555543
No 155
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.27 E-value=71 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. .||+|+|+....+..++.++++
T Consensus 165 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 197 (266)
T cd06282 165 SALLALLTAHPAPTAIFCSNDLLALAVIRALRR 197 (266)
T ss_pred HHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 4566667664 6899999998888777777765
No 156
>cd08505 PBP2_NikA_DppA_OppA_like_18 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=30.09 E-value=1.2e+02 Score=30.37 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 166 TGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 166 tGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
.+.-...+|++|++.|++. ++++.+
T Consensus 389 ~~~~~~~~a~~iq~~l~~i---GI~v~i 413 (528)
T cd08505 389 ATPDDKQRLEWWRKQFAKL---GIQLNV 413 (528)
T ss_pred CCchHHHHHHHHHHHHHHc---CceEEE
Confidence 3456789999999999774 345443
No 157
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.02 E-value=1.1e+02 Score=34.07 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=25.2
Q ss_pred ccceEEEEEcC---CCchH--HHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSD---TGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAS---tGgGH--~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.++|||||-+. +|.|= +-++.-+.+++++. ++++.++|.-
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~---G~~vi~v~~n 597 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREA---GYETIMVNCN 597 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHC---CCEEEEEeCC
Confidence 46789999754 45442 33333444666655 6789999854
No 158
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=29.49 E-value=1.7e+02 Score=26.96 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=33.8
Q ss_pred cccccccceEEEEEcCC--CchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 150 QIGAERTKNVLILMSDT--GGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 150 ~~~~~~~kRVLILSASt--GgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
.+--++++||++++.|+ |+==...|+++.+.+... +++++++|+
T Consensus 20 ~~~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~---g~~v~~idl 65 (219)
T TIGR02690 20 ATHKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCE---GRETRIFDP 65 (219)
T ss_pred CCCCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhc---CCEEEEeCc
Confidence 46667788999999875 666667888888888643 578999995
No 159
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=29.39 E-value=3.9e+02 Score=23.47 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=32.7
Q ss_pred cccceEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 154 ERTKNVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 154 ~~~kRVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+....-+|+++-+| -+|..-|.+|+..+.+.++..+.+.+-|
T Consensus 15 ~~~~~~~v~~~~~G~~vN~~L~~lla~~l~~~~~~~v~~~~~d 57 (187)
T PF08494_consen 15 ERGGRHVVLHSFFGRRVNEALARLLAYRLSRRYGLSVSVSVDD 57 (187)
T ss_pred ecCCcEEEEEcCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 34457899999999 6899999999999988876555555444
No 160
>PRK13768 GTPase; Provisional
Probab=29.29 E-value=1.1e+02 Score=27.90 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=31.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+++.+++..-|.|=...+.+++.++... +..|.++|+-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~---g~~v~~i~~D 39 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQ---GYDVAIVNLD 39 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhc---CCceEEEECC
Confidence 56788999999999999999999999764 3466676653
No 161
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=29.20 E-value=1.2e+02 Score=26.43 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=32.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
.|+.||.--|+|=...|++|.+.|... +..+..+|.-..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~---g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR---GIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT---TS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEecCcch
Confidence 488999999999999999999999876 457788886543
No 162
>cd08501 PBP2_Lpqw The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to
Probab=28.93 E-value=1.5e+02 Score=28.73 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=19.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
.+-|++.+-..-+...|++|++.|++.
T Consensus 347 ~l~l~~~~~~~~~~~~a~~i~~~l~~i 373 (486)
T cd08501 347 TLRIAYDGDDPTAVAAAELIQDMLAKA 373 (486)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 454454433456889999999999774
No 163
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=28.81 E-value=1.3e+02 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=26.3
Q ss_pred eEEEEEcCC-CchHHH-HHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 158 NVLILMSDT-GGGHRA-SAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 158 RVLILSASt-GgGH~q-AAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|||++++|. .+|+.. .|+++.+.+.+. +.+++++|+.+
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~---~~~~~~idl~~ 40 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQ---GVEVDHLSVRD 40 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHC---CCeEEEEEecC
Confidence 588888775 445554 677888887653 45788888754
No 164
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=28.27 E-value=1.9e+02 Score=27.81 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=36.5
Q ss_pred cCCCcceeeecccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC
Q 047228 140 EDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG 202 (280)
Q Consensus 140 ~~~~~~~~~~~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP 202 (280)
.+.|+-++.........++|||..+..++|... ...|.+.|++. +++|..+.+++...+
T Consensus 126 ~~~e~L~~~l~~~~~~g~~vli~~~~~~~~~~~-~~~L~~~L~~~---G~~V~~~~vY~~~~~ 184 (381)
T PRK07239 126 ESSAEVLEYLLEEGVAGKRIAVQLHGATDEWEP-LPEFLEALRAA---GAEVVPVPVYRWVPP 184 (381)
T ss_pred CccHHHHHHHhcCCCCCCEEEEEcCCCccccCc-hHHHHHHHHHC---CCEEEEeCcEEEcCC
Confidence 334444443333334567899877664444333 67899999876 568888888875544
No 165
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=28.20 E-value=2.1e+02 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 168 GGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 168 gGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
..-..|-+.|++-+++..++.++.+++|+.+
T Consensus 13 p~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~ 43 (72)
T cd02978 13 PKSERALQNLKRILEELLGGPYELEVIDVLK 43 (72)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEEEccc
Confidence 5566777888888988777899999999975
No 166
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=28.09 E-value=1e+02 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
+..|+.|+.+.|+|=..-+++|.+++..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3479999999999999999999999943
No 167
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=27.96 E-value=1.3e+02 Score=26.52 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=34.4
Q ss_pred cccccc-cceEEEEEcCCCchHHHHHHHHHHHHhhhcCC--CeEEEEEeccc
Q 047228 150 QIGAER-TKNVLILMSDTGGGHRASAEAIRDAFKIEFGD--EYRIFVKDVCK 198 (280)
Q Consensus 150 ~~~~~~-~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~--~veV~IVD~Le 198 (280)
..|+.. ..++|++.+.-..|=.+|-++|++.+....++ .+++..+|..+
T Consensus 19 ~~~~~~~~~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d 70 (203)
T TIGR01884 19 EIGIKEEGDLVILVKSPIEDGARRAVESLRAIISDLGGNLVEGTIKEIELKD 70 (203)
T ss_pred hcCCCccCcEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCcceEEEEecCC
Confidence 445555 55677777776788899999999999876532 45666666655
No 168
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=27.77 E-value=58 Score=30.84 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhCCCEEEeCCc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHP 267 (280)
..+.|.++|++++||+||+-.|
T Consensus 111 ~~~~l~~~Ir~~~PdvViT~~p 132 (284)
T TIGR03445 111 AAGALVAVIREVRPHVVVTYDP 132 (284)
T ss_pred HHHHHHHHHHHhCCcEEEecCC
Confidence 4478999999999999998443
No 169
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=27.67 E-value=1.8e+02 Score=27.16 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ 220 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P 220 (280)
..++.+...+|.|=.+-|++|++.+... +..+.++ -+|.+ ...|..+-++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~----~~~E~ve----dnp~L----~~FY~d~~~yaf 55 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK----VFYELVE----DNPFL----DLFYEDPERYAF 55 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc----eeeeccc----CChHH----HHHHHhHHHhhH
Confidence 3588899999999999999999999732 2333333 22443 444555555664
No 170
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=27.57 E-value=51 Score=30.22 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhCCCEEEeCC
Q 047228 245 YYAKEVEAGLMEYKPDIIISVH 266 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIISTH 266 (280)
.+++.++++|++++|.++||=|
T Consensus 166 ~GS~alr~~I~~~~P~l~i~GH 187 (224)
T cd07388 166 QGSHEVAHLIKTHNPLVVLVGG 187 (224)
T ss_pred cCHHHHHHHHHHhCCCEEEEcC
Confidence 4678999999999999999975
No 171
>PRK06762 hypothetical protein; Provisional
Probab=27.56 E-value=89 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.493 Sum_probs=24.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
|+++++++...|+|=...|++|++.+
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999998
No 172
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.30 E-value=3.7e+02 Score=24.79 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=54.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 237 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~ 237 (280)
||||+..+ +-|=.--+-.+-++|++.+| ++++.++- .+ .+..+++..|..+.++........ .
T Consensus 1 rILii~~~-~iGD~i~~~p~l~~Lk~~~P-~a~I~~l~-----~~--------~~~~l~~~~p~id~v~~~~~~~~~-~- 63 (334)
T TIGR02195 1 KILVIGPS-WVGDMVMAQSLYRLLKKRYP-QAVIDVLA-----PA--------WCRPLLERMPEIRQAIDMPLGHGA-L- 63 (334)
T ss_pred CEEEEccc-hhHHHHHHHHHHHHHHHHCC-CCEEEEEe-----ch--------hhHHHHhcCchhceeeecCCcccc-h-
Confidence 46766654 35667777788888888885 65665432 12 234556666644433221111100 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHH
Q 047228 238 YLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIP 273 (280)
Q Consensus 238 l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~Vl 273 (280)
......++.+.|++.++|++|..+...-..+
T Consensus 64 -----~~~~~~~~~~~lr~~~yD~vi~l~~~~~s~l 94 (334)
T TIGR02195 64 -----ELTERRRLGRSLREERYDQAIVLPNSLKSAL 94 (334)
T ss_pred -----hhhHHHHHHHHHhhcCCCEEEECCCCHHHHH
Confidence 0112236677889999999999988654443
No 173
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=27.26 E-value=50 Score=31.48 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhCCCEEEeCCc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHP 267 (280)
+...++.+|+.+||++++|.|-
T Consensus 194 GS~~V~dlIk~~~P~ivl~Ghi 215 (255)
T PF14582_consen 194 GSAAVRDLIKTYNPDIVLCGHI 215 (255)
T ss_dssp SBHHHHHHHHHH--SEEEE-SS
T ss_pred cHHHHHHHHHhcCCcEEEeccc
Confidence 3467899999999999999885
No 174
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=27.02 E-value=3.1e+02 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=23.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhc
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEF 185 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~ 185 (280)
++.++++||+.| ..+|++|++.+++..
T Consensus 36 ~~~Ll~SDT~~G-~~~a~ilk~yl~~~~ 62 (149)
T TIGR02619 36 KAILYHSDTAQG-RFCASILKRFLEREL 62 (149)
T ss_pred EEEEEEcCCHHH-HHHHHHHHHHHHHhc
Confidence 688899999999 578999999998764
No 175
>cd08518 PBP2_NikA_DppA_OppA_like_19 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=27.01 E-value=1.2e+02 Score=29.38 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+-|++.+-...+..+|++|++.|++. +-.+++..+|.
T Consensus 328 l~l~~~~~~~~~~~~a~~i~~~l~~i-Gi~v~i~~~~~ 364 (464)
T cd08518 328 FTLYYPSGDQVRQDLAVAVASQAKKL-GIEVKLEGKSW 364 (464)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHh-CCeEEEEEeeH
Confidence 44444433357899999999999875 33444444443
No 176
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=26.92 E-value=1.5e+02 Score=22.04 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=24.8
Q ss_pred EEEcCCCchHHHHH-HHHHHHHhhhcCCCeEEEEEec
Q 047228 161 ILMSDTGGGHRASA-EAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 161 ILSAStGgGH~qAA-eAIaEAL~~~~p~~veV~IVD~ 196 (280)
++-+..|-|....+ ++|++++.++ ++++.+...
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~---gi~~~~~~~ 36 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKEL---GIEVEVSAG 36 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHT---TECEEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHHHhc---cCceEEEEe
Confidence 35678899998888 9999999876 355555443
No 177
>cd08503 PBP2_NikA_DppA_OppA_like_17 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=26.74 E-value=1.5e+02 Score=28.56 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
..+-|++.+-+..|..+|++|++.|++. +-.+++..+|.
T Consensus 322 ~~l~l~~~~~~~~~~~~a~~i~~~l~~~-Gi~v~i~~~~~ 360 (460)
T cd08503 322 LEVELVTSDAAPGAVDAAVLFAEQAAQA-GININVKRVPA 360 (460)
T ss_pred ceEEEEecCCCccHHHHHHHHHHHHHhh-CCEEEEEEeCh
Confidence 3455555444448999999999999874 32334444443
No 178
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=26.71 E-value=34 Score=32.26 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=21.0
Q ss_pred ccccCCCccccccccce--ecCCCcccccce
Q 047228 20 ISFKHPHTHFCQLRHVT--CCNNLNTLNIPL 48 (280)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 48 (280)
+.-|||+|+||..+.-. |+.|+..-|+|-
T Consensus 171 LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 171 LARKYPEVKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp HHHH-TTSEEEEEEECGCCTTTTS-TTC-SE
T ss_pred HHHhCCceEEEEEehhccCcccCCcccCCCE
Confidence 45689999999988754 678898888885
No 179
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=26.59 E-value=1.3e+02 Score=26.54 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.9
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
...|++|+.+.|+|=..-+++|.++|.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 446999999999999999999999996
No 180
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=26.47 E-value=2.5e+02 Score=26.36 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHS 236 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s 236 (280)
|||||+-.+ +-|=.--+--+-++|++.+| ++++.++- .+. +..+++..|..+.++......+. .
T Consensus 1 mrILii~~~-~iGD~il~tP~l~~Lk~~~P-~a~I~~l~-----~~~--------~~~l~~~~P~vd~vi~~~~~~~~-~ 64 (348)
T PRK10916 1 MKILVIGPS-WVGDMMMSQSLYRTLKARYP-QAIIDVMA-----PAW--------CRPLLSRMPEVNEAIPMPLGHGA-L 64 (348)
T ss_pred CcEEEEccC-cccHHHhHHHHHHHHHHHCC-CCeEEEEe-----chh--------hHHHHhcCCccCEEEecccccch-h
Confidence 468887755 46667777778888888875 65665432 222 44455666633322211111100 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhH
Q 047228 237 CYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI 272 (280)
Q Consensus 237 ~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~V 272 (280)
. .....++.+.|++.++|+||..|...-..
T Consensus 65 ~------~~~~~~l~~~lr~~~yD~vidl~~~~~s~ 94 (348)
T PRK10916 65 E------IGERRRLGHSLREKRYDRAYVLPNSFKSA 94 (348)
T ss_pred h------hHHHHHHHHHHHhcCCCEEEECCCcHHHH
Confidence 0 11223567788999999999998655443
No 181
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=26.46 E-value=1.1e+02 Score=23.95 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHH-HHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 159 VLILMSDTGGGHR-ASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 159 VLILSAStGgGH~-qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+|.+++.|..|. .||++|+++-.+.. -.+.|+.....
T Consensus 1 ~~vtacp~G~Aht~lAae~L~~aA~~~G-~~i~VE~qg~~ 39 (85)
T TIGR00829 1 VAVTACPTGIAHTFMAAEALEKAAKKRG-WEVKVETQGSV 39 (85)
T ss_pred CEEecCCCcHHHHHHHHHHHHHHHHHCC-CeEEEEecCCc
Confidence 4677889999996 68899999997762 34455444433
No 182
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=26.36 E-value=53 Score=31.81 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhCCCEEEeC
Q 047228 246 YAKEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIIST 265 (280)
...++.+++++++||++|-|
T Consensus 141 qp~~i~~Ll~~~~PDIlViT 160 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVIT 160 (283)
T ss_pred chHHHHHHHHHhCCCEEEEe
Confidence 34688999999999988766
No 183
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.29 E-value=68 Score=29.31 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcch
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPfp 269 (280)
....|.++|++.+||+|+.+++.-
T Consensus 97 ~~~~L~~ii~~~~P~~V~t~~~~d 120 (237)
T COG2120 97 ITGALVAIIRRLRPDVVFTPYPDD 120 (237)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCC
Confidence 346899999999999999998765
No 184
>PRK06851 hypothetical protein; Provisional
Probab=26.19 E-value=1.8e+02 Score=28.95 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCccchHHHHHHHHhcCCCCCC-CCCCccccCCCCCCCcCCCcceeeecccccccceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 103 KKAVSLTEKVLQRVYGNHSTSS-SSNLGCSFDSDDDNEEDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
-++-.+++.+.++.|++..... ....+--| .|--+..|-+...+.=.+..+|+.+|+...|.|=....+.|.+++
T Consensus 163 ~k~~~~~~~l~~~l~~~~~~~~~~g~~rh~F----~ga~Tp~G~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 163 AKANELTDELIQELFKGAPGKISKGKVRHLF----LGAITPKGAVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred HHHHHHHHHHHHHHhccCcccccCCceeeee----ccccCCCcHHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3455678889999998865311 11111113 233444554544444446778899999999999999999999988
Q ss_pred hhh
Q 047228 182 KIE 184 (280)
Q Consensus 182 ~~~ 184 (280)
.++
T Consensus 239 ~~~ 241 (367)
T PRK06851 239 EER 241 (367)
T ss_pred HhC
Confidence 654
No 185
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=26.13 E-value=1.8e+02 Score=26.81 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHH-HH-HHhcCCCch
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWK-VA-FHSTSPKWI 234 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~-~~-Y~~T~~~~~ 234 (280)
|||||+-.+ +-|=.--+-.+-++|.+.+| ++++.++= .+ .+..+++..|.-+ .+ +.. ..+.
T Consensus 1 m~ILii~~~-~iGD~v~~~p~~~~lk~~~P-~a~I~~l~-----~~--------~~~~l~~~~p~vd~vi~~~~--~~~~ 63 (322)
T PRK10964 1 MRVLIVKTS-SMGDVLHTLPALTDAQQAIP-GIQFDWVV-----EE--------GFAQIPSWHPAVDRVIPVAI--RRWR 63 (322)
T ss_pred CeEEEEecc-chHHHHhHHHHHHHHHHhCC-CCEEEEEE-----CH--------HHHHHHhcCCCccEEEeech--hHhh
Confidence 478888877 57778788888888888885 65665432 12 1333444444111 11 100 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcch
Q 047228 235 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfp 269 (280)
..............+.+.|++.+.|++|..|...
T Consensus 64 -~~~~~~~~~~~~~~~~~~lr~~~yD~vidl~~~~ 97 (322)
T PRK10964 64 -KAWFSAPIRAERKAFREALQAEQYDAVIDAQGLV 97 (322)
T ss_pred -hcccchhHHHHHHHHHHHHhccCCCEEEEccchH
Confidence 0000000011234667778999999999998643
No 186
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=25.91 E-value=97 Score=28.32 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPf 268 (280)
...++.+.+.+.+||+|++....
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~ 98 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDT 98 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc
Confidence 45678888999999999987544
No 187
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=25.70 E-value=89 Score=26.85 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=23.6
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. ||+|+|+....+..++.++++
T Consensus 166 ~~~~~~l~~~-~~av~~~~d~~a~gv~~al~~ 196 (265)
T cd06299 166 AGATKLLDQG-ATAIIAGDSMMTIGAIRAIHD 196 (265)
T ss_pred HHHHHHHcCC-CCEEEEcCcHHHHHHHHHHHH
Confidence 3455666655 999999999988777777764
No 188
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=25.55 E-value=84 Score=26.63 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhCCCEEEeCCcch
Q 047228 245 YYAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIISTHPfp 269 (280)
...+.+++++++.+||.||.|=-+.
T Consensus 25 ~~~~~~~~~i~~~~pd~vv~~GDl~ 49 (156)
T cd08165 25 QMERSFQTSLWLLQPDVVFVLGDLF 49 (156)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4556889999999999999874443
No 189
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=25.43 E-value=1e+02 Score=26.73 Aligned_cols=33 Identities=9% Similarity=-0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++. .||+|+|+....+..++++++.
T Consensus 165 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 198 (268)
T cd06270 165 YAAMQELLARGAPFTAVFCANDEMAAGAISALRE 198 (268)
T ss_pred HHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 35566777654 5899999999888877888765
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=25.27 E-value=78 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
.+.++|.+..|.|-...|++|...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3578899999999999999999998664
No 191
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=25.14 E-value=1.9e+02 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=36.0
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHh-hhcCCCeEEEEEecccccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFK-IEFGDEYRIFVKDVCKEYA 201 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~-~~~p~~veV~IVD~Le~is 201 (280)
+++-.++|..+.|.|=...|++|++.+. .. .-....+|.-++..
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~---~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGS---ERPLIRIDMSEYSE 45 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SS---CCEEEEEEGGGHCS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCC---ccchHHHhhhcccc
Confidence 4667889999999999999999999997 33 33677889888777
No 192
>cd08495 PBP2_NikA_DppA_OppA_like_8 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=25.06 E-value=1.9e+02 Score=28.06 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=22.1
Q ss_pred eEEEEEcCCC-chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTG-GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStG-gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
.+.+.+.+.+ .-+.+.|++|++.|++. +-.+++..+|
T Consensus 334 ~l~~~~~~~~~~~~~~~a~~i~~~l~~~-Gi~v~~~~~~ 371 (482)
T cd08495 334 KLRVSASGSGQMQPLPMNEFIQQNLAEI-GIDLDIEVVE 371 (482)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHc-CceEEEEEcc
Confidence 3444433333 45789999999999875 3233333344
No 193
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.93 E-value=67 Score=29.24 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.7
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||++
T Consensus 51 ~~l~~~~~~~~Pd~vi~~ 68 (211)
T PRK13196 51 AALSRLLDELQPSAVLLT 68 (211)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 577888999999999984
No 194
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.84 E-value=70 Score=31.05 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhCCCEEEeC
Q 047228 246 YAKEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIIST 265 (280)
...++.+++++++||++|-|
T Consensus 142 qp~~i~~Ll~~~~PDIlViT 161 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVIT 161 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEe
Confidence 44689999999999988866
No 195
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.75 E-value=60 Score=28.06 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhCCCEEEe
Q 047228 246 YAKEVEAGLMEYKPDIIIS 264 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIIS 264 (280)
..+.|.++|++++||+|+-
T Consensus 51 ~~~~l~~~i~~~kP~vI~v 69 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAV 69 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3468899999999998875
No 196
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.72 E-value=69 Score=29.70 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.9
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||++
T Consensus 51 ~~l~~~i~~~~Pd~Vi~~ 68 (222)
T PRK13195 51 AAAQQAIAEIEPALVIML 68 (222)
T ss_pred HHHHHHHHHHCCCEEEEe
Confidence 456777889999999986
No 197
>cd08504 PBP2_OppA The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which
Probab=24.17 E-value=1.5e+02 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhh-hcCCCeEEEEEec
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKI-EFGDEYRIFVKDV 196 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~-~~p~~veV~IVD~ 196 (280)
..+-|++.+ |..+..+|++|++.|++ . +-.+++..+|.
T Consensus 344 ~~l~i~~~~-~~~~~~~a~~i~~~l~~~i-GI~v~i~~~~~ 382 (498)
T cd08504 344 LKLTLLYNT-SENHKKIAEAIQQMWKKNL-GVKVTLKNVEW 382 (498)
T ss_pred ceEEEEecC-chhHHHHHHHHHHHHHHcC-CCeEEEEecch
Confidence 345444443 46799999999999987 4 33444444443
No 198
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=24.15 E-value=1.2e+02 Score=28.20 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPf 268 (280)
...+|.+++++.+||+|++--..
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~ 96 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDT 96 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc
Confidence 34789999999999999997553
No 199
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.04 E-value=1.1e+02 Score=26.18 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.++++.. .||+|+|.....+..+++++++
T Consensus 170 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 202 (268)
T cd06271 170 AAAAELLALPDRPTAIVCSSELMALGVLAALAE 202 (268)
T ss_pred HHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 4566677664 4999999998888777787765
No 200
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=24.03 E-value=69 Score=30.47 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhCCCEEEeC
Q 047228 246 YAKEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIIST 265 (280)
..++|.++|++++||+||+-
T Consensus 109 ~~~~L~~iIr~~~PdvVvT~ 128 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITTY 128 (283)
T ss_pred HHHHHHHHHHHcCCEEEEec
Confidence 45789999999999998875
No 201
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=24.00 E-value=4.7e+02 Score=23.15 Aligned_cols=106 Identities=17% Similarity=0.062 Sum_probs=56.8
Q ss_pred eeEEEEEEEeeecccceeEEEecCCCCccchHHHHHHHHhcCCCCCCCCCCccccCCCCCC-------------CcCCCc
Q 047228 78 YSIQILLVVDFCYSKQSMVMTVAYPKKAVSLTEKVLQRVYGNHSTSSSSNLGCSFDSDDDN-------------EEDGES 144 (280)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 144 (280)
-|++|+..-|=--+.-|.+||=..+.--+. -+...+|-.+...+++.+...-+....+-| ++.+-.
T Consensus 20 rSvNvf~~~~~gt~~~sfvIsRd~~~~g~~-~~~y~~rql~~l~k~Lpgy~~~~~~e~~v~~~aa~~~~y~w~~~~~~~r 98 (147)
T COG5435 20 RSVNVFVSGDNGTSGFSFVISRDPLEPGDT-FPEYVQRQLALLRKQLPGYELHHRREIEVGGAAAPLLDYQWTSPEGEQR 98 (147)
T ss_pred ceEEEEEecCCCcceeEEEEecCCCCCCCc-HHHHHHHHHHHHHhhCCCeEEeeccccccCccccceeEEEeecCCCCCc
Confidence 367777777666566677776444332112 344445555555444443322211121111 111223
Q ss_pred ceeeecccccccceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 145 TVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 145 ~~~~~~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
-|-..++-.++.++|||+|.++-++=.--+++.-+++...
T Consensus 99 ~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~S 138 (147)
T COG5435 99 RVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQS 138 (147)
T ss_pred eEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHh
Confidence 3444566778888999999988777666665555554433
No 202
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.95 E-value=3.1e+02 Score=27.88 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=50.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC--Cchhh-HHHHHHHHHhHHHHHHHHHHhcCC
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG--WPLND-MERSYKFMVKHVQLWKVAFHSTSP 231 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP--~l~~l-i~~~Yl~~Vr~~PLY~~~Y~~T~~ 231 (280)
+-|.++.+|+++|+|=. -+.+....+.++||+ -+-.++.. +++.. -.+.|.+.+|+ .+|-++..
T Consensus 112 ~vk~viLiSptfGsn~l------v~~~mnk~~~daeVi--S~SsY~~dTk~id~~~p~~alTkavKk-----riYlgs~~ 178 (431)
T COG4408 112 QVKSVILISPTFGSNLL------VQNLMNKAGRDAEVI--SLSSYYADTKYIDAEQPNRALTKAVKK-----RIYLGSQH 178 (431)
T ss_pred cccEEEEecccccccHH------HHHHHhhhCCCceEE--EeehhcccceeecccCcchHHHHHHhH-----heeeccCC
Confidence 34678889999998732 223322333455554 43334333 11111 11223333322 23333322
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhh
Q 047228 232 KWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQH 271 (280)
Q Consensus 232 ~~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~ 271 (280)
.. + -...++.++++...-|+.+|--|+.+.
T Consensus 179 ~n--s--------~~~e~l~~v~aq~~I~v~~~esp~~AE 208 (431)
T COG4408 179 GN--S--------GSAEMLTAVLAQHGIDVEPCESPLAAE 208 (431)
T ss_pred CC--C--------hHHHHHHHHHHhcCCceEEcCChhhhh
Confidence 21 1 123568899999999999999998764
No 203
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=23.77 E-value=1.8e+02 Score=26.95 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=33.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.++-||.=-|+|-...|+||.+.|.++ ++.+.++|.-
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~---G~~~y~LDGD 60 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAK---GYHVYLLDGD 60 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHc---CCeEEEecCh
Confidence 589999999999999999999999876 5688888875
No 204
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=23.63 E-value=98 Score=30.86 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=31.3
Q ss_pred cccccccceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 150 QIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 150 ~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
+.|-+..|+||.|-..+|||=-+-|+.|++.+++.
T Consensus 81 A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 81 AQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred HhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 55667778999999999999999999999999764
No 205
>PLN00016 RNA-binding protein; Provisional
Probab=23.49 E-value=79 Score=30.00 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=29.8
Q ss_pred cccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 150 QIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 150 ~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
...+.++++||| +.+.|||+-..+..|.++|.+. +.+|.+++-
T Consensus 46 ~~~~~~~~~VLV-t~~~~GatG~iG~~lv~~L~~~---G~~V~~l~R 88 (378)
T PLN00016 46 AAAAVEKKKVLI-VNTNSGGHAFIGFYLAKELVKA---GHEVTLFTR 88 (378)
T ss_pred hhcccccceEEE-EeccCCCceeEhHHHHHHHHHC---CCEEEEEec
Confidence 445556677875 6667777777888888888765 457776664
No 206
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=23.49 E-value=1.5e+02 Score=25.89 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=27.9
Q ss_pred ceEEEEEcC--CCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSD--TGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAS--tGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+||++|+.| -|+-.+..|+++++.+... ...++...|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~--~~~~~~~~~ 39 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAG--GEVEVEFDD 39 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhccc--CceEEEecc
Confidence 478888866 7899999999999999765 244444444
No 207
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=23.47 E-value=2.1e+02 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=32.0
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.++.|.|.+..=|.|=...|-+|+.++.+.. +..|-++|.-
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~--g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEY--DKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCeEEEEECC
Confidence 4556777778889999999999999997542 3478888875
No 208
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=23.31 E-value=2.3e+02 Score=27.24 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhCCCEEEeCC
Q 047228 245 YYAKEVEAGLMEYKPDIIISVH 266 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIISTH 266 (280)
....++.+++++++||+|+..-
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~G 101 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLG 101 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeC
Confidence 3457999999999999999876
No 209
>cd08520 PBP2_NikA_DppA_OppA_like_21 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=22.96 E-value=2.9e+02 Score=26.75 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=19.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
++-|++ ..|..+.++|++|++.|++.
T Consensus 331 ~l~l~~-~~~~~~~~~a~~i~~~l~~i 356 (468)
T cd08520 331 SLELLT-SSSGDEVRVAELIKEQLERV 356 (468)
T ss_pred EEEEEe-cCCchHHHHHHHHHHHHHHc
Confidence 344444 34557899999999999875
No 210
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.89 E-value=1.9e+02 Score=26.18 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCC
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGW 203 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~ 203 (280)
..+.|+|.|+.-|.|=...|-.|+.++.+. +.+|.++|. +.-.|.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~---g~~VllID~-D~~~~~ 146 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQL---GEKTLLIDA-NLRDPV 146 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhc---CCeEEEEeC-CCCCcc
Confidence 345667777778899999999999999764 458888997 333343
No 211
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=22.85 E-value=38 Score=26.95 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=18.4
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
+.+|+|||+-+|+|-| .|-.|..++
T Consensus 37 ~GpK~VLViGaStGyG---LAsRIa~aF 61 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYG---LASRIAAAF 61 (78)
T ss_dssp TS-SEEEEES-SSHHH---HHHHHHHHH
T ss_pred CCCceEEEEecCCccc---HHHHHHHHh
Confidence 5578999999999988 455677777
No 212
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=22.78 E-value=1.8e+02 Score=27.31 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=32.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+-|.+.|.+=|.|=..++-+|+-+|.++ +..|.++|.-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~---G~~V~lIDaD 39 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAAR---GARVALIDAD 39 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 56678888889999999999999999876 3478888874
No 213
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=22.57 E-value=1.2e+02 Score=24.97 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchH-----HHHHHHHHHHHhhhcCCCeEEEE
Q 047228 157 KNVLILMSDTGGGH-----RASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 157 kRVLILSAStGgGH-----~qAAeAIaEAL~~~~p~~veV~I 193 (280)
|+.||-|.|+|.|| .+.|.||-+++.+..| ..+|-+
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp-~arVA~ 41 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDP-NARVAC 41 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-T-T-EEEE
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCC-CCeEEE
Confidence 57899999999999 5667776666655543 334433
No 214
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.51 E-value=8e+02 Score=26.33 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhCCCEEEe-CCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEYKPDIIIS-VHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIIS-THPfpa~VlL~vLk~ 279 (280)
.+++.+.+++.+||++|. -+|=-+--+++.+|+
T Consensus 299 ~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk 332 (608)
T PRK01021 299 YRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRK 332 (608)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHh
Confidence 467889999999999998 455444445555554
No 215
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.46 E-value=1e+02 Score=34.42 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=25.4
Q ss_pred ccceEEEEEcCC---C--chHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDT---G--GGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSASt---G--gGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
..+||||+-+.- | +=++.++..+..+|++. +++|..+|.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~---G~~vi~v~~ 49 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE---GYQVVLVNP 49 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc---CCEEEEEeC
Confidence 457999986542 2 22344566666777665 678998883
No 216
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=22.26 E-value=1.2e+02 Score=25.99 Aligned_cols=32 Identities=16% Similarity=-0.066 Sum_probs=23.7
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++..||+|+|+-...+..+++++++
T Consensus 167 ~~~~~~l~~~~~~ai~~~~d~~a~~~~~~l~~ 198 (268)
T cd06298 167 ELAEELLEDGKPTAAFVTDDELAIGILNAAQD 198 (268)
T ss_pred HHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 34556666655999999988887677777764
No 217
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=22.21 E-value=1e+02 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=24.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
.++||+||...|.|=..+.++|++++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456999999999999999999999984
No 218
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.10 E-value=1.1e+02 Score=28.09 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSC 237 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~ 237 (280)
||||+-.+ +-|=.--+-.+-++|++.+| +.++.+ ...+. +..+++..|..+.++......+ ...
T Consensus 1 ~ILiir~~-~iGD~vl~~p~l~~Lr~~~P-~a~I~~-----l~~~~--------~~~~~~~~p~vd~v~~~~~~~~-~~~ 64 (319)
T TIGR02193 1 RILIVKTS-SLGDVIHTLPALTDIKRALP-DVEIDW-----VVEEG--------FADIVRLHPAVDEVIPVALRRW-RKT 64 (319)
T ss_pred CEEEEecc-cHHHHHHHHHHHHHHHHhCC-CCEEEE-----EEChh--------HhhhhhcCCCccEEEEechhhh-hhc
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhh
Q 047228 238 YLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVL 277 (280)
Q Consensus 238 l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vL 277 (280)
+...-.+.....+.+.+++.++|+||..+...-..++-.+
T Consensus 65 ~~~~~~~~~~~~~~~~lr~~~yD~vi~~~~~~~s~~l~~~ 104 (319)
T TIGR02193 65 LFSAATWREIKALRALLRAERYDAVIDAQGLIKSALVARM 104 (319)
T ss_pred cccchhHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHHh
No 219
>PRK00131 aroK shikimate kinase; Reviewed
Probab=22.01 E-value=1.3e+02 Score=24.48 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=24.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
+++.++|+...|+|=...|++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456888999999999999999999984
No 220
>PF05729 NACHT: NACHT domain
Probab=21.97 E-value=1.4e+02 Score=23.65 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=26.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcC
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFG 186 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p 186 (280)
|+|+++++.|.|=...+..+.+.+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 68999999999999999999999977643
No 221
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=21.83 E-value=1.3e+02 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHHhh-hCCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLME-YKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee-~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++ ..||+|+|+..-.+..+++++++
T Consensus 171 ~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~ 204 (273)
T cd01541 171 FEKIKEILKRPERPTAIVCYNDEIALRVIDLLKE 204 (273)
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 4567777765 46999999998888877887764
No 222
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=21.62 E-value=2.2e+02 Score=27.69 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=31.9
Q ss_pred cccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 152 GAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 152 ~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+..+..+++.+++.=|.|=...|..|+.++.+. +..|-++|.-
T Consensus 26 ~~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~---g~rVllid~D 68 (329)
T cd02033 26 PPTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQ---GKRVLLIGCD 68 (329)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEEee
Confidence 343445777778888899999999999999765 3466666653
No 223
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.62 E-value=85 Score=28.61 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+.+++++||+||++
T Consensus 50 ~~l~~~~~~~~Pd~vl~~ 67 (209)
T PRK13193 50 DLIVTKIREMKPILTLGI 67 (209)
T ss_pred HHHHHHHHHHCCCEEEEe
Confidence 567788889999999985
No 224
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=86 Score=29.10 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhCCCEEEeC
Q 047228 247 AKEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIIST 265 (280)
.+.|.+.|++++||+|+|.
T Consensus 49 ~~~l~~~i~~~qPd~vl~i 67 (207)
T COG2039 49 IDALVQAIAEVQPDLVLAI 67 (207)
T ss_pred HHHHHHHHHhhCCCeEEEe
Confidence 3678999999999999986
No 225
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.42 E-value=2.5e+02 Score=20.95 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=29.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++++-|+....+.. ...+++|+..+++.+. ..|+.++|-.
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~-~~eiivvddg 41 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYK-DFEIIVVDDG 41 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhc-ceEEEEEeCC
Confidence 45677778788877 7777888888876653 4688888864
No 226
>TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein. Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of E. coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule. Sequences that exactly (or mostly) have the same binding site residues score above the trusted (or noise) cutoffs to this model. Most appear to be lipoproteins.
Probab=21.40 E-value=2.6e+02 Score=27.42 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+-|++.+-...+..+|++|++.|.+. +-.+++..+|.
T Consensus 344 l~l~~~~~~~~~~~~a~~l~~~l~~~-GI~v~i~~~~~ 380 (500)
T TIGR02294 344 LELYYDKTSALQKSLAEYLQAEWRKI-GIKLSLIGEEE 380 (500)
T ss_pred EEEEEcCCChhhHHHHHHHHHHHHHc-CCeEEEeecCh
Confidence 44444332357889999999999774 33444444454
No 227
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.31 E-value=6.5e+02 Score=27.06 Aligned_cols=23 Identities=4% Similarity=-0.034 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPf 268 (280)
...+|.++|++.+||+|.+-.+-
T Consensus 388 ~~~~L~~~lk~~kpDIVH~h~~~ 410 (694)
T PRK15179 388 GTTKLTDVMRSSVPSVVHIWQDG 410 (694)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCc
Confidence 34578889999999998864433
No 228
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.23 E-value=1.3e+02 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++. +||+|+|+....+.-++.++++
T Consensus 159 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 192 (265)
T cd01543 159 QEELAQWLQSLPKPVGIFACTDARARQLLEACRR 192 (265)
T ss_pred HHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHH
Confidence 34567777654 6999999998777777777764
No 229
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=21.23 E-value=85 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhCCCEEE---eCCc
Q 047228 246 YAKEVEAGLMEYKPDIII---SVHP 267 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVII---STHP 267 (280)
..+++.+.+++.+||+|| ++|-
T Consensus 36 a~~~i~~~i~~~~PDvvVii~~dH~ 60 (284)
T PRK13366 36 GYEFSKQWEKEEKPDVIFLVYNDHA 60 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCcH
Confidence 457999999999999988 6773
No 230
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=21.07 E-value=2.9e+02 Score=20.28 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=26.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+|-+++.+-..-. .+.+++++++... +++++++|.
T Consensus 2 ~I~v~~~~C~~C~-~~~~~~~~~~~~~---~i~~ei~~~ 36 (76)
T PF13192_consen 2 KIKVFSPGCPYCP-ELVQLLKEAAEEL---GIEVEIIDI 36 (76)
T ss_dssp EEEEECSSCTTHH-HHHHHHHHHHHHT---TEEEEEEET
T ss_pred EEEEeCCCCCCcH-HHHHHHHHHHHhc---CCeEEEEEc
Confidence 5666777777777 7788888888654 478888885
No 231
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.94 E-value=1.4e+02 Score=25.60 Aligned_cols=99 Identities=15% Similarity=0.001 Sum_probs=51.1
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC-CchhhHHHHHHHHHhHHH-H--HHHHHHhcCCCchhhHHHHH
Q 047228 166 TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG-WPLNDMERSYKFMVKHVQ-L--WKVAFHSTSPKWIHSCYLAA 241 (280)
Q Consensus 166 tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP-~l~~li~~~Yl~~Vr~~P-L--Y~~~Y~~T~~~~~~s~l~~~ 241 (280)
+|.=|.++++.+.+.|.+.. .. ++.++-. .... .....-..+|...++... . ..... .. . .+
T Consensus 96 v~~d~~~~g~~~~~~l~~~g-~~-~i~~l~~--~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~--~~-~--~~----- 161 (267)
T cd06283 96 VTLDNYEAAKEAVDHLIEKG-YE-RILFVTE--PLDEISPRMERYEGFKEALAEHGIGVNEELIE--ID-D--ED----- 161 (267)
T ss_pred EEeccHHHHHHHHHHHHHcC-CC-cEEEEec--CccccccHHHHHHHHHHHHHHcCCCCCcceeE--ec-c--cc-----
Confidence 55566778888888887652 22 3333321 1110 111234455665555432 0 11110 00 0 00
Q ss_pred HHHHHHHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 242 MAAYYAKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 242 l~~l~~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
..-..+.+.+++++. +||+|+|+....+..+++++++
T Consensus 162 -~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 199 (267)
T cd06283 162 -ADELDERLRQLLNKPKKKTAIFAANGLILLEVLKALKE 199 (267)
T ss_pred -hHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 112345677777665 5999999988777666777654
No 232
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=20.70 E-value=1.3e+02 Score=27.37 Aligned_cols=25 Identities=12% Similarity=0.091 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 168 GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 168 gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
||+......|.++|.+. +.+|.++-
T Consensus 21 GG~~~~~~~l~~~L~~~---g~~V~v~~ 45 (398)
T cd03800 21 GGQNVYVLELARALARL---GHEVDIFT 45 (398)
T ss_pred CceeehHHHHHHHHhcc---CceEEEEE
Confidence 89999999999999765 44666553
No 233
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.41 E-value=1.5e+02 Score=25.54 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++. +||+|+|+-...+..++.++++
T Consensus 171 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 204 (270)
T cd06294 171 YKALKKLLEQHPRPTAIVATDDLLALGVLKVLNE 204 (270)
T ss_pred HHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHH
Confidence 34666777654 5999999988777666777654
No 234
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.29 E-value=1e+02 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=23.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+||+|+-+++|| .+||++|++ +. ++.+|.++|--
T Consensus 1 m~~VVIIGgG~aG--~~aA~~l~~----~~-~~~~I~li~~~ 35 (438)
T PRK13512 1 MPKIIVVGAVAGG--ATCASQIRR----LD-KESDIIIFEKD 35 (438)
T ss_pred CCeEEEECCcHHH--HHHHHHHHh----hC-CCCCEEEEECC
Confidence 6789998665544 467777764 22 35688888754
No 235
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.23 E-value=1.5e+02 Score=26.45 Aligned_cols=32 Identities=6% Similarity=-0.153 Sum_probs=23.2
Q ss_pred HHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. +||+|+|+....+..++.++++
T Consensus 167 ~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~ 199 (269)
T cd06287 167 AACAQLLAQHPDLDALCVPVDAFAVGAVRAATE 199 (269)
T ss_pred HHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 4556666653 6999999987777777777764
Done!