Query 047228
Match_columns 280
No_of_seqs 124 out of 435
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oti_A CALG3; calicheamicin, T 97.5 0.00039 1.3E-08 63.0 9.9 38 155-196 19-56 (398)
2 3s2u_A UDP-N-acetylglucosamine 97.4 0.00089 3E-08 61.4 10.2 35 156-194 2-36 (365)
3 4amg_A Snogd; transferase, pol 97.3 0.00052 1.8E-08 61.4 8.2 36 155-194 21-56 (400)
4 3otg_A CALG1; calicheamicin, T 97.1 0.0007 2.4E-08 60.8 6.6 38 154-195 18-55 (412)
5 4fzr_A SSFS6; structural genom 97.1 0.00035 1.2E-08 63.1 4.2 38 153-194 12-49 (398)
6 1f0k_A MURG, UDP-N-acetylgluco 96.8 0.0022 7.6E-08 56.4 6.7 35 157-195 7-41 (364)
7 2p6p_A Glycosyl transferase; X 96.6 0.0046 1.6E-07 55.3 7.3 35 157-195 1-35 (384)
8 3tsa_A SPNG, NDP-rhamnosyltran 96.5 0.0027 9.3E-08 56.8 5.3 34 157-194 2-35 (391)
9 3rsc_A CALG2; TDP, enediyne, s 96.5 0.0099 3.4E-07 53.6 8.9 41 151-195 15-55 (415)
10 2gek_A Phosphatidylinositol ma 96.4 0.0068 2.3E-07 53.6 6.9 105 154-276 18-125 (406)
11 2x6q_A Trehalose-synthase TRET 95.6 0.1 3.5E-06 46.8 11.1 102 155-273 39-141 (416)
12 3ia7_A CALG4; glycosysltransfe 95.5 0.056 1.9E-06 47.9 9.0 37 155-195 3-39 (402)
13 2iyf_A OLED, oleandomycin glyc 95.3 0.1 3.6E-06 47.2 10.4 36 156-195 7-42 (430)
14 2iya_A OLEI, oleandomycin glyc 94.4 0.36 1.2E-05 43.8 11.4 36 155-194 11-46 (424)
15 2a5l_A Trp repressor binding p 94.1 0.087 3E-06 43.3 6.0 46 154-202 3-48 (200)
16 2iuy_A Avigt4, glycosyltransfe 93.5 0.084 2.9E-06 46.0 5.2 81 155-271 2-97 (342)
17 3okp_A GDP-mannose-dependent a 92.9 0.29 9.8E-06 42.8 7.6 101 155-278 3-106 (394)
18 3f6r_A Flavodoxin; FMN binding 92.7 0.2 6.7E-06 39.6 5.8 41 156-199 1-41 (148)
19 2zki_A 199AA long hypothetical 92.7 0.22 7.5E-06 41.0 6.2 41 155-199 3-43 (199)
20 1ydg_A Trp repressor binding p 92.2 0.29 1E-05 40.8 6.5 42 155-199 5-46 (211)
21 1iir_A Glycosyltransferase GTF 92.1 0.41 1.4E-05 43.6 7.9 35 157-195 1-35 (415)
22 3b6i_A Flavoprotein WRBA; flav 91.7 0.27 9.2E-06 40.2 5.6 42 156-199 1-42 (198)
23 2ark_A Flavodoxin; FMN, struct 91.5 0.36 1.2E-05 39.9 6.2 42 155-198 3-44 (188)
24 3r6w_A FMN-dependent NADH-azor 89.9 0.92 3.1E-05 38.1 7.5 51 156-207 1-54 (212)
25 1t5b_A Acyl carrier protein ph 89.5 1.1 3.8E-05 36.5 7.4 50 156-206 1-53 (201)
26 3p0r_A Azoreductase; structura 89.3 1.4 4.9E-05 37.5 8.3 53 155-208 3-59 (211)
27 2hpv_A FMN-dependent NADH-azor 89.0 1.4 4.6E-05 36.6 7.7 50 156-206 1-56 (208)
28 2vzf_A NADH-dependent FMN redu 88.7 0.78 2.7E-05 38.2 6.1 40 156-198 2-44 (197)
29 1v4v_A UDP-N-acetylglucosamine 88.5 1.5 5.2E-05 38.5 8.1 21 247-267 80-100 (376)
30 3beo_A UDP-N-acetylglucosamine 88.2 2.3 7.9E-05 37.0 9.0 24 246-269 83-106 (375)
31 3fro_A GLGA glycogen synthase; 87.5 2.4 8E-05 37.4 8.7 37 155-194 1-41 (439)
32 3oy2_A Glycosyltransferase B73 87.5 0.33 1.1E-05 43.3 3.2 28 157-184 1-30 (413)
33 3fni_A Putative diflavin flavo 87.4 1.1 3.8E-05 36.5 6.1 41 155-198 3-43 (159)
34 1f4p_A Flavodoxin; electron tr 86.7 1.2 4E-05 34.9 5.6 39 157-198 1-39 (147)
35 3hly_A Flavodoxin-like domain; 86.5 0.96 3.3E-05 36.8 5.2 39 157-198 1-39 (161)
36 3u7i_A FMN-dependent NADH-azor 86.5 2.4 8.3E-05 36.7 8.1 52 155-207 3-60 (223)
37 2q62_A ARSH; alpha/beta, flavo 86.2 2 6.8E-05 38.1 7.5 44 153-199 31-76 (247)
38 1vgv_A UDP-N-acetylglucosamine 85.9 3.5 0.00012 36.1 8.9 22 246-267 74-95 (384)
39 2hna_A Protein MIOC, flavodoxi 85.9 0.72 2.4E-05 36.5 4.0 38 156-196 1-38 (147)
40 1ykg_A SIR-FP, sulfite reducta 85.4 0.71 2.4E-05 37.7 3.9 40 155-197 8-47 (167)
41 2iw1_A Lipopolysaccharide core 85.4 2 6.8E-05 37.2 6.9 89 157-269 1-91 (374)
42 1sqs_A Conserved hypothetical 83.0 2.6 8.9E-05 36.1 6.6 43 156-200 1-45 (242)
43 3f2v_A General stress protein 81.8 0.69 2.4E-05 39.6 2.4 42 156-200 1-42 (192)
44 3fvw_A Putative NAD(P)H-depend 79.7 2.6 8.9E-05 35.2 5.3 39 156-198 2-42 (192)
45 3c48_A Predicted glycosyltrans 79.4 2.3 7.9E-05 38.0 5.1 40 152-194 16-65 (438)
46 1d4a_A DT-diaphorase, quinone 76.5 4.8 0.00016 35.7 6.3 42 156-200 2-45 (273)
47 3rpe_A MDAB, modulator of drug 75.9 3.9 0.00013 35.8 5.5 42 154-198 23-70 (218)
48 2bmv_A Flavodoxin; electron tr 75.6 4.1 0.00014 32.6 5.2 26 156-181 1-26 (164)
49 1bvy_F Protein (cytochrome P45 75.3 3 0.0001 35.3 4.5 41 155-198 20-60 (191)
50 2q9u_A A-type flavoprotein; fl 74.4 5 0.00017 36.6 6.0 41 155-198 255-295 (414)
51 5nul_A Flavodoxin; electron tr 73.9 3.3 0.00011 32.0 4.0 37 159-198 1-37 (138)
52 3tem_A Ribosyldihydronicotinam 73.7 6.3 0.00022 34.1 6.3 45 157-204 2-49 (228)
53 2yjn_A ERYCIII, glycosyltransf 73.0 2.8 9.5E-05 38.4 4.0 37 155-195 19-55 (441)
54 1obo_A Flavodoxin; electron tr 72.6 4.2 0.00014 32.5 4.5 36 157-197 2-37 (169)
55 3u7r_A NADPH-dependent FMN red 72.3 3.6 0.00012 35.0 4.3 40 155-198 1-42 (190)
56 3d7n_A Flavodoxin, WRBA-like p 71.6 3.3 0.00011 34.3 3.8 31 153-183 3-33 (193)
57 4dik_A Flavoprotein; TM0755, e 70.9 9.4 0.00032 36.1 7.2 45 155-202 264-308 (410)
58 2fz5_A Flavodoxin; alpha/beta 69.4 7.8 0.00027 29.3 5.2 37 159-198 2-38 (137)
59 1czn_A Flavodoxin; FMN binding 68.8 5.6 0.00019 31.7 4.4 38 157-198 1-38 (169)
60 4ici_A Putative flavoprotein; 68.7 4.4 0.00015 33.4 3.9 32 151-182 8-39 (171)
61 1uqw_A Putative binding protei 68.0 8.1 0.00028 36.6 6.1 88 103-193 283-377 (509)
62 2wc1_A Flavodoxin; electron tr 67.9 1.8 6.1E-05 35.5 1.3 28 156-183 1-28 (182)
63 2fzv_A Putative arsenical resi 67.9 8.3 0.00028 35.1 5.9 43 154-199 56-100 (279)
64 3lcm_A SMU.1420, putative oxid 67.5 8.4 0.00029 32.2 5.5 40 157-200 1-42 (196)
65 1t0i_A YLR011WP; FMN binding p 67.0 8.6 0.00029 31.2 5.3 43 157-199 1-48 (191)
66 1ag9_A Flavodoxin; electron tr 66.6 6.5 0.00022 32.0 4.5 27 157-183 1-27 (175)
67 1e5d_A Rubredoxin\:oxygen oxid 66.1 10 0.00034 34.2 6.0 39 156-197 252-290 (402)
68 1rtt_A Conserved hypothetical 65.6 7.3 0.00025 31.9 4.6 39 156-198 6-46 (193)
69 4gi5_A Quinone reductase; prot 64.8 12 0.0004 34.0 6.2 43 154-199 20-64 (280)
70 3o6p_A Peptide ABC transporter 64.2 4.2 0.00014 34.0 2.9 34 158-193 100-133 (229)
71 3k1y_A Oxidoreductase; structu 63.4 15 0.00051 31.1 6.3 47 154-201 9-61 (191)
72 2ohh_A Type A flavoprotein FPR 63.3 13 0.00045 33.4 6.3 43 154-199 254-296 (404)
73 3edo_A Flavoprotein, putative 61.5 6.1 0.00021 31.5 3.3 28 155-182 2-29 (151)
74 2jjm_A Glycosyl transferase, g 60.4 11 0.00038 33.1 5.2 27 246-272 87-113 (394)
75 3klb_A Putative flavoprotein; 60.3 8.7 0.0003 31.1 4.1 28 155-182 3-30 (162)
76 3tpa_A Heme-binding protein A; 60.0 14 0.00048 35.1 6.1 88 103-193 289-388 (521)
77 2vsy_A XCC0866; transferase, g 59.4 28 0.00097 32.4 8.0 41 153-196 202-245 (568)
78 2m1z_A LMO0427 protein; homolo 59.1 35 0.0012 27.0 7.3 46 156-202 2-49 (106)
79 1rrv_A Glycosyltransferase GTF 58.3 10 0.00035 34.2 4.6 34 157-194 1-34 (416)
80 4e5v_A Putative THUA-like prot 57.9 17 0.00058 32.8 6.0 40 155-196 3-42 (281)
81 3svl_A Protein YIEF; E. coli C 57.4 8.6 0.00029 32.3 3.7 47 155-205 3-50 (193)
82 1iow_A DD-ligase, DDLB, D-ALA\ 57.3 16 0.00055 31.2 5.5 40 156-198 2-44 (306)
83 3ouz_A Biotin carboxylase; str 55.6 9.7 0.00033 35.3 4.1 86 154-269 4-89 (446)
84 1tvm_A PTS system, galactitol- 55.5 27 0.00092 27.1 6.1 43 155-199 20-63 (113)
85 1ycg_A Nitric oxide reductase; 55.4 20 0.00068 32.1 6.0 39 156-197 251-289 (398)
86 4hs4_A Chromate reductase; tri 55.3 12 0.00039 31.7 4.2 45 156-206 6-53 (199)
87 3rqt_A Putative uncharacterize 55.2 21 0.00073 33.6 6.4 92 103-195 265-365 (486)
88 2r60_A Glycosyl transferase, g 54.8 14 0.00049 33.8 5.1 36 156-194 7-56 (499)
89 2bpo_A CPR, P450R, NADPH-cytoc 54.3 13 0.00045 37.5 5.0 39 155-196 48-87 (682)
90 3s2y_A Chromate reductase; ura 59.1 2.7 9.2E-05 35.6 0.0 42 153-198 3-47 (199)
91 1dpe_A Dipeptide-binding prote 53.6 22 0.00076 33.3 6.3 23 168-193 359-381 (507)
92 2d5w_A Peptide ABC transporter 52.7 28 0.00095 33.6 6.9 33 158-193 406-438 (603)
93 3hr4_A Nitric oxide synthase, 52.2 22 0.00074 31.2 5.6 43 152-198 36-78 (219)
94 3ot5_A UDP-N-acetylglucosamine 52.0 8.8 0.0003 35.5 3.2 21 245-265 101-121 (403)
95 3m8u_A Heme-binding protein A; 51.8 21 0.0007 33.9 5.7 88 103-193 284-383 (522)
96 2noo_A NIKA, nickel-binding pe 51.1 30 0.001 32.5 6.7 37 158-195 341-377 (502)
97 3k9g_A PF-32 protein; ssgcid, 50.7 14 0.00047 31.4 3.9 46 148-197 19-64 (267)
98 4eg0_A D-alanine--D-alanine li 50.3 24 0.00083 30.9 5.6 42 153-197 10-54 (317)
99 3czc_A RMPB; alpha/beta sandwi 49.7 31 0.001 26.5 5.5 45 151-196 13-58 (110)
100 2l2q_A PTS system, cellobiose- 49.0 20 0.00067 27.5 4.3 40 157-198 5-44 (109)
101 3zq6_A Putative arsenical pump 47.5 28 0.00095 31.2 5.6 40 155-197 12-51 (324)
102 1jet_A OPPA, oligo-peptide bin 46.8 15 0.00053 34.6 4.0 36 158-195 360-396 (517)
103 3lvu_A ABC transporter, peripl 45.3 24 0.00082 29.8 4.6 38 158-196 129-166 (258)
104 2fcr_A Flavodoxin; electron tr 45.3 17 0.00059 29.2 3.6 26 158-183 1-26 (173)
105 3dzc_A UDP-N-acetylglucosamine 44.0 14 0.00047 33.9 3.1 24 244-267 97-120 (396)
106 2z04_A Phosphoribosylaminoimid 43.7 25 0.00087 31.2 4.7 33 156-197 1-33 (365)
107 1xoc_A Oligopeptide-binding pr 43.1 43 0.0015 31.6 6.5 37 158-195 361-397 (520)
108 3ug7_A Arsenical pump-driving 42.9 37 0.0012 30.9 5.7 42 153-197 22-63 (349)
109 1rli_A Trp repressor binding p 42.6 15 0.0005 29.3 2.7 37 156-199 3-40 (184)
110 3rht_A (gatase1)-like protein; 42.5 9.2 0.00032 34.4 1.6 36 154-197 2-39 (259)
111 2kyr_A Fructose-like phosphotr 42.2 73 0.0025 25.4 6.7 43 155-198 4-48 (111)
112 2dzd_A Pyruvate carboxylase; b 41.7 26 0.0009 32.4 4.7 38 152-198 2-39 (461)
113 3t66_A Nickel ABC transporter 41.4 38 0.0013 31.9 5.8 37 158-195 331-367 (496)
114 4gl8_A Oligopeptide ABC transp 41.4 15 0.00052 34.6 3.0 93 103-195 306-407 (529)
115 3zs6_A Periplasmic oligopeptid 40.5 28 0.00096 32.8 4.7 37 158-195 350-386 (506)
116 2yjn_A ERYCIII, glycosyltransf 40.4 27 0.00093 31.7 4.5 32 246-277 132-164 (441)
117 3h4t_A Glycosyltransferase GTF 40.2 23 0.0008 32.0 4.0 34 157-194 1-34 (404)
118 3foz_A TRNA delta(2)-isopenten 39.1 33 0.0011 31.9 4.9 29 153-181 6-34 (316)
119 2ixd_A LMBE-related protein; h 38.4 19 0.00066 31.6 3.0 21 247-267 86-106 (242)
120 3o9p_A Periplasmic murein pept 37.8 28 0.00097 32.9 4.3 37 158-195 362-398 (519)
121 3ake_A Cytidylate kinase; CMP 37.7 29 0.00099 27.7 3.8 25 157-181 2-26 (208)
122 3dff_A Teicoplanin pseudoaglyc 37.7 20 0.00068 31.9 3.0 24 245-268 135-158 (273)
123 2r4q_A Phosphotransferase syst 37.6 1.1E+02 0.0036 24.2 6.9 41 156-197 3-44 (106)
124 1g3q_A MIND ATPase, cell divis 37.1 46 0.0016 27.2 5.0 39 156-197 2-40 (237)
125 3ry3_A Putative solute-binding 36.9 53 0.0018 31.3 6.0 33 158-193 361-393 (528)
126 2r48_A Phosphotransferase syst 36.7 1.2E+02 0.004 24.0 7.0 38 158-196 4-43 (106)
127 3dfi_A Pseudoaglycone deacetyl 36.6 21 0.00073 31.6 3.0 24 245-268 132-155 (270)
128 3d3q_A TRNA delta(2)-isopenten 36.1 42 0.0014 31.3 5.1 27 156-182 6-32 (340)
129 3l9w_A Glutathione-regulated p 35.6 31 0.0011 32.5 4.2 48 156-208 236-283 (413)
130 1qhx_A CPT, protein (chloramph 35.6 28 0.00095 27.2 3.3 27 156-182 2-28 (178)
131 1e6c_A Shikimate kinase; phosp 35.1 29 0.001 26.9 3.3 27 156-182 1-27 (173)
132 3trf_A Shikimate kinase, SK; a 34.7 35 0.0012 26.9 3.8 27 156-182 4-30 (185)
133 1qf9_A UMP/CMP kinase, protein 34.7 39 0.0013 26.3 4.1 27 155-181 4-30 (194)
134 1wcv_1 SOJ, segregation protei 34.2 47 0.0016 28.1 4.7 41 154-197 4-44 (257)
135 4ffl_A PYLC; amino acid, biosy 34.1 47 0.0016 29.5 4.9 34 156-198 1-34 (363)
136 1hyq_A MIND, cell division inh 33.9 59 0.002 27.2 5.2 39 156-197 2-40 (263)
137 1uan_A Hypothetical protein TT 33.3 19 0.00064 31.1 2.0 22 247-268 84-105 (227)
138 3qe2_A CPR, P450R, NADPH--cyto 33.2 36 0.0012 33.8 4.4 39 155-196 17-55 (618)
139 1kjq_A GART 2, phosphoribosylg 33.1 52 0.0018 29.4 5.0 35 155-198 10-44 (391)
140 4dzz_A Plasmid partitioning pr 32.6 49 0.0017 26.3 4.4 39 156-197 1-39 (206)
141 2woo_A ATPase GET3; tail-ancho 32.6 57 0.0019 29.3 5.2 40 155-197 17-56 (329)
142 3iqw_A Tail-anchored protein t 32.1 52 0.0018 30.1 4.9 42 153-197 12-53 (334)
143 4ddd_A Immunogenic protein; ss 32.1 66 0.0022 28.7 5.5 43 153-195 28-72 (327)
144 3o74_A Fructose transport syst 32.1 48 0.0016 27.2 4.3 33 247-279 167-201 (272)
145 3q9l_A Septum site-determining 31.9 60 0.0021 26.8 4.9 39 156-197 2-40 (260)
146 2amj_A Modulator of drug activ 31.4 44 0.0015 28.0 4.1 39 157-198 13-57 (204)
147 3igf_A ALL4481 protein; two-do 30.8 47 0.0016 31.1 4.5 38 156-196 1-38 (374)
148 1wwj_A Circadian clock protein 30.7 1.1E+02 0.0037 24.4 6.0 41 158-198 8-49 (105)
149 1rzu_A Glycogen synthase 1; gl 30.7 58 0.002 29.5 5.0 35 157-194 1-40 (485)
150 2dwc_A PH0318, 433AA long hypo 30.5 60 0.0021 29.7 5.1 34 155-197 18-51 (433)
151 3k5i_A Phosphoribosyl-aminoimi 29.7 63 0.0022 29.7 5.1 31 156-195 24-54 (403)
152 1e4e_A Vancomycin/teicoplanin 29.4 54 0.0018 29.1 4.5 39 156-197 3-44 (343)
153 1yob_A Flavodoxin 2, flavodoxi 29.0 26 0.00088 28.4 2.1 27 157-183 1-27 (179)
154 3drf_A Oligopeptide-binding pr 28.8 61 0.0021 31.3 5.0 24 168-194 420-443 (590)
155 3tov_A Glycosyl transferase fa 28.7 31 0.0011 31.1 2.8 96 155-272 7-103 (349)
156 2ph1_A Nucleotide-binding prot 28.7 87 0.003 26.5 5.5 39 156-197 18-56 (262)
157 3k3p_A D-alanine--D-alanine li 28.6 52 0.0018 30.5 4.4 44 151-197 32-78 (383)
158 2qu7_A Putative transcriptiona 28.6 55 0.0019 27.3 4.2 31 248-279 178-208 (288)
159 1a7j_A Phosphoribulokinase; tr 28.6 48 0.0017 29.4 4.0 42 157-201 5-46 (290)
160 3kjh_A CO dehydrogenase/acetyl 28.4 71 0.0024 25.9 4.7 38 157-198 1-38 (254)
161 1nks_A Adenylate kinase; therm 28.2 87 0.003 24.3 5.1 35 158-195 2-36 (194)
162 2grv_A LPQW; substrate-binding 28.0 81 0.0028 30.9 5.8 37 159-196 412-448 (621)
163 3hbm_A UDP-sugar hydrolase; PS 27.4 23 0.00079 31.8 1.6 26 157-182 1-29 (282)
164 2i87_A D-alanine-D-alanine lig 27.3 47 0.0016 29.8 3.7 39 156-197 3-44 (364)
165 2qzs_A Glycogen synthase; glyc 27.0 75 0.0026 28.7 5.0 35 157-194 1-40 (485)
166 2xci_A KDO-transferase, 3-deox 27.0 40 0.0014 30.5 3.2 26 157-184 41-66 (374)
167 3q2o_A Phosphoribosylaminoimid 27.0 85 0.0029 28.3 5.4 36 154-198 12-47 (389)
168 3end_A Light-independent proto 26.9 90 0.0031 27.0 5.4 43 153-198 37-79 (307)
169 3ea0_A ATPase, para family; al 26.9 91 0.0031 25.5 5.2 41 155-197 3-43 (245)
170 1e2b_A Enzyme IIB-cellobiose; 26.9 1.3E+02 0.0043 23.1 5.7 41 156-198 3-43 (106)
171 3bfv_A CAPA1, CAPB2, membrane 26.8 93 0.0032 27.1 5.5 39 156-197 82-120 (271)
172 3of5_A Dethiobiotin synthetase 26.8 65 0.0022 27.5 4.4 31 154-184 2-32 (228)
173 3llv_A Exopolyphosphatase-rela 26.3 76 0.0026 23.9 4.3 33 155-196 5-37 (141)
174 3ax6_A Phosphoribosylaminoimid 26.3 75 0.0026 28.4 4.9 34 156-198 1-34 (380)
175 4gqo_A LMO0859 protein; virule 26.2 1.1E+02 0.0038 27.1 5.9 59 137-196 9-67 (433)
176 3lac_A Pyrrolidone-carboxylate 26.2 38 0.0013 29.6 2.8 18 248-265 51-68 (215)
177 3giu_A Pyrrolidone-carboxylate 26.1 38 0.0013 29.7 2.7 18 248-265 52-69 (215)
178 3exa_A TRNA delta(2)-isopenten 26.1 62 0.0021 30.2 4.3 27 156-182 2-28 (322)
179 3ro0_A Pyrrolidone-carboxylate 26.0 39 0.0013 29.8 2.8 18 248-265 52-69 (223)
180 3ksm_A ABC-type sugar transpor 25.9 64 0.0022 26.4 4.0 32 248-279 176-208 (276)
181 4hwg_A UDP-N-acetylglucosamine 25.9 54 0.0018 30.2 3.9 21 245-265 81-101 (385)
182 3k4h_A Putative transcriptiona 25.7 61 0.0021 26.9 3.9 33 247-279 180-213 (292)
183 1ehi_A LMDDL2, D-alanine:D-lac 25.6 92 0.0032 28.3 5.4 40 156-198 3-46 (377)
184 2hy7_A Glucuronosyltransferase 25.5 44 0.0015 30.4 3.2 37 154-194 12-49 (406)
185 3m9w_A D-xylose-binding peripl 25.2 74 0.0025 26.9 4.4 33 247-279 175-209 (313)
186 4hps_A Pyrrolidone-carboxylate 25.2 41 0.0014 29.8 2.8 18 248-265 73-90 (228)
187 3gbv_A Putative LACI-family tr 25.2 79 0.0027 26.2 4.5 31 248-279 189-220 (304)
188 2ebj_A Pyrrolidone carboxyl pe 25.0 41 0.0014 28.8 2.8 18 248-265 47-64 (192)
189 3cio_A ETK, tyrosine-protein k 24.9 1.2E+02 0.004 26.9 5.8 40 155-197 103-142 (299)
190 3hcw_A Maltose operon transcri 24.9 61 0.0021 27.4 3.8 32 248-279 178-213 (295)
191 1x10_A Pyrrolidone-carboxylate 24.8 42 0.0014 29.1 2.8 18 248-265 50-67 (208)
192 2o20_A Catabolite control prot 24.7 72 0.0025 27.5 4.3 31 248-279 230-260 (332)
193 3mw8_A Uroporphyrinogen-III sy 24.6 1.5E+02 0.0052 24.7 6.3 54 141-203 105-158 (240)
194 4fle_A Esterase; structural ge 24.4 61 0.0021 25.3 3.5 41 155-196 1-41 (202)
195 3jvd_A Transcriptional regulat 24.3 71 0.0024 27.8 4.2 100 165-279 153-252 (333)
196 3eph_A TRNA isopentenyltransfe 24.2 98 0.0034 29.7 5.5 27 156-182 1-27 (409)
197 3fkq_A NTRC-like two-domain pr 24.0 1E+02 0.0036 27.9 5.4 43 152-197 139-181 (373)
198 1iu8_A Pyrrolidone-carboxylate 24.0 45 0.0015 28.9 2.8 18 248-265 47-64 (206)
199 3e5n_A D-alanine-D-alanine lig 23.9 74 0.0025 29.3 4.5 41 155-198 21-64 (386)
200 2pq6_A UDP-glucuronosyl/UDP-gl 23.8 92 0.0031 29.1 5.1 35 156-194 8-42 (482)
201 2iyv_A Shikimate kinase, SK; t 23.6 52 0.0018 25.9 2.9 26 157-182 2-27 (184)
202 3crm_A TRNA delta(2)-isopenten 23.6 1.1E+02 0.0038 28.2 5.6 36 156-197 4-39 (323)
203 1uj2_A Uridine-cytidine kinase 23.6 60 0.002 27.4 3.5 46 156-201 21-68 (252)
204 1y63_A LMAJ004144AAA protein; 23.6 75 0.0026 25.4 3.9 24 157-180 10-33 (184)
205 1nn5_A Similar to deoxythymidy 23.3 1.1E+02 0.0038 24.3 4.9 28 157-184 9-36 (215)
206 2x0d_A WSAF; GT4 family, trans 23.1 67 0.0023 29.6 4.0 41 151-195 41-86 (413)
207 3kjx_A Transcriptional regulat 22.9 80 0.0027 27.3 4.3 33 247-279 235-268 (344)
208 3gv0_A Transcriptional regulat 22.9 67 0.0023 26.9 3.7 33 247-279 176-209 (288)
209 3la6_A Tyrosine-protein kinase 22.9 1.3E+02 0.0045 26.5 5.8 39 156-197 92-130 (286)
210 3io3_A DEHA2D07832P; chaperone 22.7 91 0.0031 28.6 4.8 42 153-197 14-57 (348)
211 3tb6_A Arabinose metabolism tr 22.6 80 0.0027 26.1 4.0 33 247-279 187-222 (298)
212 3gfs_A FMN-dependent NADPH-azo 22.5 91 0.0031 24.8 4.2 41 157-205 1-43 (174)
213 2pez_A Bifunctional 3'-phospho 22.3 1.5E+02 0.0051 23.2 5.5 36 157-195 5-40 (179)
214 4gxh_A Pyrrolidone-carboxylate 22.3 50 0.0017 28.8 2.8 18 248-265 52-69 (216)
215 3kb2_A SPBC2 prophage-derived 22.3 76 0.0026 24.2 3.6 24 158-181 2-25 (173)
216 4e4t_A Phosphoribosylaminoimid 22.0 99 0.0034 28.7 4.9 34 155-197 34-67 (419)
217 2xj4_A MIPZ; replication, cell 22.0 92 0.0032 26.8 4.5 38 157-197 5-42 (286)
218 2w70_A Biotin carboxylase; lig 22.0 89 0.003 28.7 4.6 33 155-196 1-33 (449)
219 2woj_A ATPase GET3; tail-ancho 21.9 1E+02 0.0036 28.0 5.0 41 154-197 15-57 (354)
220 3l49_A ABC sugar (ribose) tran 21.9 91 0.0031 25.8 4.2 33 247-279 176-212 (291)
221 2wte_A CSA3; antiviral protein 21.7 1.3E+02 0.0045 26.3 5.4 59 140-198 18-77 (244)
222 3qk7_A Transcriptional regulat 21.7 84 0.0029 26.5 4.1 33 247-279 175-208 (294)
223 3g85_A Transcriptional regulat 21.7 72 0.0025 26.5 3.6 102 165-279 106-209 (289)
224 1a2z_A Pyrrolidone carboxyl pe 21.6 53 0.0018 28.8 2.8 18 248-265 51-68 (220)
225 3i12_A D-alanine-D-alanine lig 21.6 90 0.0031 28.2 4.5 39 156-197 3-44 (364)
226 4b4t_J 26S protease regulatory 21.5 71 0.0024 30.5 3.9 64 150-220 176-242 (405)
227 3a8t_A Adenylate isopentenyltr 21.3 71 0.0024 29.8 3.8 26 157-182 40-65 (339)
228 4b4t_M 26S protease regulatory 21.1 85 0.0029 30.1 4.3 64 150-220 209-275 (434)
229 2pbr_A DTMP kinase, thymidylat 21.1 1.4E+02 0.0048 23.1 5.0 34 159-195 2-35 (195)
230 2wwf_A Thymidilate kinase, put 21.0 1.6E+02 0.0054 23.4 5.4 29 156-184 9-37 (212)
231 4b4t_H 26S protease regulatory 20.9 71 0.0024 31.3 3.8 63 151-220 238-303 (467)
232 1zu0_A Chitin oligosaccharide 20.9 59 0.002 30.8 3.2 36 159-195 354-389 (529)
233 3miz_A Putative transcriptiona 20.9 89 0.003 26.3 4.0 103 166-279 111-218 (301)
234 3qyf_A Crispr-associated prote 20.8 1.9E+02 0.0066 27.1 6.6 42 156-199 92-133 (324)
235 3a4m_A L-seryl-tRNA(SEC) kinas 20.7 1.4E+02 0.0047 25.5 5.3 28 157-184 4-31 (260)
236 2fn9_A Ribose ABC transporter, 20.7 1E+02 0.0034 25.6 4.3 32 248-279 180-212 (290)
237 2vk2_A YTFQ, ABC transporter p 20.3 1E+02 0.0035 26.0 4.4 32 248-279 177-212 (306)
238 3r5x_A D-alanine--D-alanine li 20.3 94 0.0032 26.6 4.1 40 156-198 3-45 (307)
239 3gyb_A Transcriptional regulat 20.2 99 0.0034 25.5 4.1 32 248-279 165-197 (280)
240 3f6p_A Transcriptional regulat 20.2 1E+02 0.0035 22.0 3.8 23 157-184 3-25 (120)
241 1ihu_A Arsenical pump-driving 20.0 1.3E+02 0.0044 29.0 5.4 40 155-197 6-45 (589)
No 1
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=97.54 E-value=0.00039 Score=62.96 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=31.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
++|||||++.+ |.||...+.+|.++|.++ +.+|.++..
T Consensus 19 ~~MrIl~~~~~-~~Ghv~~~~~La~~L~~~---GheV~v~~~ 56 (398)
T 3oti_A 19 RHMRVLFVSSP-GIGHLFPLIQLAWGFRTA---GHDVLIAVA 56 (398)
T ss_dssp CCCEEEEECCS-SHHHHGGGHHHHHHHHHT---TCEEEEEES
T ss_pred hcCEEEEEcCC-CcchHhHHHHHHHHHHHC---CCEEEEecc
Confidence 34689999876 999999999999999876 457777664
No 2
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=97.37 E-value=0.00089 Score=61.37 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=25.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
.+||||....|| ||...|-||+++|.++ +.+|..+
T Consensus 2 ~~~i~i~~GGTg-GHi~palala~~L~~~---g~~V~~v 36 (365)
T 3s2u_A 2 KGNVLIMAGGTG-GHVFPALACAREFQAR---GYAVHWL 36 (365)
T ss_dssp -CEEEEECCSSH-HHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred CCcEEEEcCCCH-HHHHHHHHHHHHHHhC---CCEEEEE
Confidence 467887655454 9999999999999876 3466543
No 3
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=97.34 E-value=0.00052 Score=61.35 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=28.6
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
+.|||||++.. |.||...+-+|+++|.++ +.+|.++
T Consensus 21 ~~MRIL~~~~p-~~GHv~P~l~LA~~L~~r---Gh~Vt~~ 56 (400)
T 4amg_A 21 QSMRALFITSP-GLSHILPTVPLAQALRAL---GHEVRYA 56 (400)
T ss_dssp CCCEEEEECCS-SHHHHGGGHHHHHHHHHT---TCEEEEE
T ss_pred CCCeEEEECCC-chhHHHHHHHHHHHHHHC---CCEEEEE
Confidence 44689988765 889999999999999887 3356554
No 4
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=97.13 E-value=0.0007 Score=60.79 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=29.7
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
..+|||||++.. |+||...+.+|.++|.++ +.+|.++-
T Consensus 18 ~~~MrIl~~~~~-~~Gh~~~~~~la~~L~~~---GheV~v~~ 55 (412)
T 3otg_A 18 GRHMRVLFASLG-THGHTYPLLPLATAARAA---GHEVTFAT 55 (412)
T ss_dssp CCSCEEEEECCS-SHHHHGGGHHHHHHHHHT---TCEEEEEE
T ss_pred cceeEEEEEcCC-CcccHHHHHHHHHHHHHC---CCEEEEEc
Confidence 345689988855 899999999999999876 34666654
No 5
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=97.08 E-value=0.00035 Score=63.09 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=28.5
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
.+.+|||||++.. |.||.....+|.++|.++ +.+|.++
T Consensus 12 ~~~~MrIl~~~~~-~~gh~~~~~~La~~L~~~---GheV~v~ 49 (398)
T 4fzr_A 12 RGSHMRILVIAGC-SEGFVMPLVPLSWALRAA---GHEVLVA 49 (398)
T ss_dssp ---CCEEEEECCS-SHHHHGGGHHHHHHHHHT---TCEEEEE
T ss_pred CCCceEEEEEcCC-CcchHHHHHHHHHHHHHC---CCEEEEE
Confidence 3445789998876 899999999999999876 3466654
No 6
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=96.79 E-value=0.0022 Score=56.36 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|||||++..+| ||...+.+|.++|.++ +.+|.++-
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~---G~~V~v~~ 41 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQ---GWQVRWLG 41 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHc---CCEEEEEe
Confidence 78999987765 9999999999999775 45676654
No 7
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=96.58 E-value=0.0046 Score=55.33 Aligned_cols=35 Identities=6% Similarity=0.063 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|||||++ ..|+||...+.+|.++|.++ +.+|.++-
T Consensus 1 MrIl~~~-~~~~Gh~~p~~~la~~L~~~---Gh~V~~~~ 35 (384)
T 2p6p_A 1 MRILFVA-AGSPATVFALAPLATAARNA---GHQVVMAA 35 (384)
T ss_dssp CEEEEEC-CSSHHHHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CEEEEEe-CCccchHhHHHHHHHHHHHC---CCEEEEEe
Confidence 5799884 46799999999999999876 34666653
No 8
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=96.50 E-value=0.0027 Score=56.82 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
|||||++.. |.||...+.+|.++|.++ +.+|.++
T Consensus 2 MrIl~~~~~-~~gh~~~~~~la~~L~~~---GheV~v~ 35 (391)
T 3tsa_A 2 MRVLVVPLP-YPTHLMAMVPLCWALQAS---GHEVLIA 35 (391)
T ss_dssp CEEEEECCS-CHHHHHTTHHHHHHHHHT---TCEEEEE
T ss_pred cEEEEEcCC-CcchhhhHHHHHHHHHHC---CCEEEEe
Confidence 689988876 999999999999999876 3366554
No 9
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=96.48 E-value=0.0099 Score=53.60 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=29.9
Q ss_pred ccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 151 IGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 151 ~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
.+.+.|+||||++. -|.||....-+|.++|.++ +.+|.++-
T Consensus 15 ~~~~~m~rIl~~~~-~~~GHv~p~l~La~~L~~~---Gh~V~v~~ 55 (415)
T 3rsc_A 15 IEGRHMAHLLIVNV-ASHGLILPTLTVVTELVRR---GHRVSYVT 55 (415)
T ss_dssp ----CCCEEEEECC-SCHHHHGGGHHHHHHHHHT---TCEEEEEE
T ss_pred cCcccCCEEEEEeC-CCccccccHHHHHHHHHHC---CCEEEEEe
Confidence 34566789998876 4899999999999999876 34666544
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=96.35 E-value=0.0068 Score=53.63 Aligned_cols=105 Identities=8% Similarity=0.039 Sum_probs=55.6
Q ss_pred cccceEEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcC
Q 047228 154 ERTKNVLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTS 230 (280)
Q Consensus 154 ~~~kRVLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~ 230 (280)
.+||||||++... +||....+..+.++|.+. +.+|.++.......+......... -+-..|..+....
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~---G~~V~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--- 88 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA---GHEVSVLAPASPHVKLPDYVVSGG---KAVPIPYNGSVAR--- 88 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT---TCEEEEEESCCTTSCCCTTEEECC---CCC-------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC---CCeEEEEecCCccccCCcccccCC---cEEeccccCCccc---
Confidence 3567899999653 488999999999999876 456766554432211000000000 0001111100000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHh
Q 047228 231 PKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWV 276 (280)
Q Consensus 231 ~~~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~v 276 (280)
. .+.......+.+++++.+||+|++.++......+.+
T Consensus 89 --~-------~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~ 125 (406)
T 2gek_A 89 --L-------RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLA 125 (406)
T ss_dssp -----------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHH
T ss_pred --c-------cccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHH
Confidence 0 011123357888899999999999988776654433
No 11
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=95.59 E-value=0.1 Score=46.82 Aligned_cols=102 Identities=9% Similarity=0.032 Sum_probs=56.3
Q ss_pred ccceEEEEEcCC-CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCc
Q 047228 155 RTKNVLILMSDT-GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 233 (280)
Q Consensus 155 ~~kRVLILSASt-GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~ 233 (280)
++||||+++.+. +||+...+..+.++|.+. +.+|.++-.-. + . ..|. ..+. ....+.......
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~---G~~v~v~~~~~---~--~----~~~~-~~~~---~~~~~~~~~~~~ 102 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSI---GIEARWFVIEG---P--T----EFFN-VTKT---FHNALQGNESLK 102 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHT---TCEEEEEECCC---C--H----HHHH-HHHH---HHHHHTTCCSCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhC---CCeEEEEEccC---C--c----chhh-hhcc---cceeeccccccc
Confidence 457899999774 699999999999999875 44665543221 1 0 1111 0111 111111110100
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHH
Q 047228 234 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIP 273 (280)
Q Consensus 234 ~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~Vl 273 (280)
........+ ......+.+++++.+||+|++..+.+..++
T Consensus 103 ~~~~~~~~~-~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~ 141 (416)
T 2x6q_A 103 LTEEMKELY-LNVNRENSKFIDLSSFDYVLVHDPQPAALI 141 (416)
T ss_dssp CCHHHHHHH-HHHHHHHHHSSCGGGSSEEEEESSTTGGGG
T ss_pred ccHHHHHHH-HHHHHHHHHHHhhcCCCEEEEeccchhhHH
Confidence 111111111 123456788899999999999988766543
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=95.52 E-value=0.056 Score=47.91 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=29.1
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
.|+|||+++.. |.||..-..+|.++|.++ +.+|.++-
T Consensus 3 ~M~~il~~~~~-~~Ghv~~~~~La~~L~~~---GheV~v~~ 39 (402)
T 3ia7_A 3 RQRHILFANVQ-GHGHVYPSLGLVSELARR---GHRITYVT 39 (402)
T ss_dssp CCCEEEEECCS-SHHHHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCEEEEEeCC-CCcccccHHHHHHHHHhC---CCEEEEEc
Confidence 36689988765 899999999999999876 34666543
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=95.35 E-value=0.1 Score=47.22 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=27.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|+||||++ .-|+||...+.+|.++|.++ +.+|.++-
T Consensus 7 m~kIl~~~-~~~~Gh~~p~~~la~~L~~~---G~~V~~~~ 42 (430)
T 2iyf_A 7 PAHIAMFS-IAAHGHVNPSLEVIRELVAR---GHRVTYAI 42 (430)
T ss_dssp -CEEEEEC-CSCHHHHGGGHHHHHHHHHT---TCEEEEEE
T ss_pred cceEEEEe-CCCCccccchHHHHHHHHHC---CCeEEEEe
Confidence 57899875 46789999999999999876 34666654
No 14
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=94.43 E-value=0.36 Score=43.77 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=28.2
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
.|+||||++ .-|.||....-+|.++|.++ +.+|.++
T Consensus 11 ~~~~Il~~~-~~~~GHv~p~l~la~~L~~~---Gh~V~~~ 46 (424)
T 2iya_A 11 TPRHISFFN-IPGHGHVNPSLGIVQELVAR---GHRVSYA 46 (424)
T ss_dssp CCCEEEEEC-CSCHHHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred ccceEEEEe-CCCCcccchHHHHHHHHHHC---CCeEEEE
Confidence 367899874 44899999999999999876 3466655
No 15
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=94.10 E-value=0.087 Score=43.26 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=34.1
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG 202 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP 202 (280)
..|+||||++.|..|-=...|++|.+.+.+. +++|+++|+-+...|
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~---g~~v~~~~l~~~~~~ 48 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQG---GFEARVRTVPAVSTE 48 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEBCCCEEC-
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhC---CCEEEEEEhhhccch
Confidence 3467999999997544567899999999764 568999998776443
No 16
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=93.52 E-value=0.084 Score=46.04 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=51.6
Q ss_pred ccceEEEEEcC---------------CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHH
Q 047228 155 RTKNVLILMSD---------------TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHV 219 (280)
Q Consensus 155 ~~kRVLILSAS---------------tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~ 219 (280)
+|||||+++.. .+||....+..+.++|.+. +.+|.++-.-....+. . .++..
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~---G~~v~v~~~~~~~~~~--~--------~~~~~ 68 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL---GHEVFLLGAPGSPAGR--P--------GLTVV 68 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT---TCEEEEESCTTSCCCS--T--------TEEEC
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHc---CCeEEEEecCCCCCCC--C--------cceec
Confidence 46799999988 4689999999999999875 4567665443211110 0 00000
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhh
Q 047228 220 QLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQH 271 (280)
Q Consensus 220 PLY~~~Y~~T~~~~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~ 271 (280)
... . . ..+.+++++.+||+|++..+....
T Consensus 69 ----------~~~---~-----~-----~~l~~~l~~~~~Dvi~~~~~~~~~ 97 (342)
T 2iuy_A 69 ----------PAG---E-----P-----EEIERWLRTADVDVVHDHSGGVIG 97 (342)
T ss_dssp ----------SCC---S-----H-----HHHHHHHHHCCCSEEEECSSSSSC
T ss_pred ----------cCC---c-----H-----HHHHHHHHhcCCCEEEECCchhhH
Confidence 000 0 0 167788889999999999877543
No 17
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=92.88 E-value=0.29 Score=42.82 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=54.7
Q ss_pred ccceEEEEEcCC---CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCC
Q 047228 155 RTKNVLILMSDT---GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSP 231 (280)
Q Consensus 155 ~~kRVLILSASt---GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~ 231 (280)
+||||||++..+ .||....+..+.++|. +.+|.++-.- .+. .....|. ...+ +. .++....
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~-----g~~v~v~~~~---~~~---~~~~~~~---~~~~-~~-~~~~~~~ 66 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQD-----PESIVVFAST---QNA---EEAHAYD---KTLD-YE-VIRWPRS 66 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTSC-----GGGEEEEEEC---SSH---HHHHHHH---TTCS-SE-EEEESSS
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHhc-----CCeEEEEECC---CCc---cchhhhc---cccc-eE-EEEcccc
Confidence 567899999755 4999999999999982 2244443221 110 0001111 0000 00 0000000
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhhh
Q 047228 232 KWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278 (280)
Q Consensus 232 ~~~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk 278 (280)
.... .......+.+++++.+||+|++.++.+...++..++
T Consensus 67 ~~~~-------~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~ 106 (394)
T 3okp_A 67 VMLP-------TPTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAK 106 (394)
T ss_dssp SCCS-------CHHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHH
T ss_pred cccc-------chhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHH
Confidence 0000 012446889999999999999988877766655544
No 18
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=92.74 E-value=0.2 Score=39.56 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=32.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
|+||+|++.|..|.=...|++|++.+.+. +++++++|+-+.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~---g~~v~~~~~~~~ 41 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAG---GHEVTLLNAADA 41 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTT---TCEEEEEETTTB
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhC---CCeEEEEehhhC
Confidence 57899999997655578999999999764 467888887654
No 19
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=92.67 E-value=0.22 Score=40.99 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=32.6
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
.||||||++.| .|-=.+.|++|.+.+.+. +++|+++|+-+.
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~---g~~v~~~~l~~~ 43 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEA---GAEVKIRRVRET 43 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHH---SCEEEEEECCCC
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhC---CCEEEEEehhHh
Confidence 35789999999 444567899999999764 568899998766
No 20
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=92.22 E-value=0.29 Score=40.79 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=34.5
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
.||||||++.|..|-=.+.|++|.+.+.+. +.+|+++|+-+.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~---g~~v~~~~l~~~ 46 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAA---GAEVRLLKVRET 46 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEECCCC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcC---CCEEEEEecccc
Confidence 578999999999555567899999999763 568999998776
No 21
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=92.15 E-value=0.41 Score=43.56 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
|||||++ .-++||...+-+|.++|.++ +.+|.++-
T Consensus 1 M~Il~~~-~~~~GHv~P~l~la~~L~~~---Gh~V~~~~ 35 (415)
T 1iir_A 1 MRVLLAT-CGSRGDTEPLVALAVRVRDL---GADVRMCA 35 (415)
T ss_dssp CEEEEEC-CSCHHHHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CeEEEEc-CCCchhHHHHHHHHHHHHHC---CCeEEEEc
Confidence 4788874 45789999999999999876 44666553
No 22
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=91.71 E-value=0.27 Score=40.21 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=31.6
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
||||||++.|-.|-=...|++|.+.+.+. .+++|+++|+-+.
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~--~g~~v~~~~l~~~ 42 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKV--DGAEVVVKRVPET 42 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTS--TTCEEEEEECCCC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhc--CCCEEEEEEcccc
Confidence 57899999995444457899999999761 2568999998765
No 23
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=91.50 E-value=0.36 Score=39.92 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
.|+||||++.|..|-=...|++|++.+.+. .+++++++|+-+
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~--~g~~v~~~~l~~ 44 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSL--EGTEVRLKHVDE 44 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTS--TTEEEEEEETTT
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhc--CCCeEEEEEhhh
Confidence 467999999996555567899999999761 256888888755
No 24
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=89.95 E-value=0.92 Score=38.14 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=37.5
Q ss_pred cceEEEEEcCC-C-chH-HHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhh
Q 047228 156 TKNVLILMSDT-G-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLND 207 (280)
Q Consensus 156 ~kRVLILSASt-G-gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~l 207 (280)
||||||+++|. + +|+ .+.|+++.+.+++.. ++.+|+++|+.+.--|.+..-
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~-~g~~v~~~dL~~~~~p~~~~~ 54 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAH-PQARVARREVGRVPLPAVTEA 54 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHC-TTCCEEEEESSSSCCCCCCHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCCeEEEEECCCCCCCcCCHH
Confidence 67899999885 4 355 567889999998765 366999999987644655443
No 25
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=89.54 E-value=1.1 Score=36.48 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=37.0
Q ss_pred cceEEEEEcCCC--chH-HHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchh
Q 047228 156 TKNVLILMSDTG--GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLN 206 (280)
Q Consensus 156 ~kRVLILSAStG--gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~ 206 (280)
||||||+++|.- +|. .+.|+++.+.+.+.. ++.+|+++|+.+.--|....
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g-~~~~v~~~dl~~~~~p~~~~ 53 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKH-VADEITVRDLAANPVPVLDG 53 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHC-TTCEEEEEETTTSCCCCCCH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhC-CCCeEEEEeccCCCCCCCCH
Confidence 578999999976 365 566889999998763 35789999998764454443
No 26
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=89.30 E-value=1.4 Score=37.48 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=38.2
Q ss_pred ccceEEEEEcCCC---chH-HHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhH
Q 047228 155 RTKNVLILMSDTG---GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDM 208 (280)
Q Consensus 155 ~~kRVLILSAStG---gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li 208 (280)
+|+||||+.+|.= +|. .+.|+++.+.+.+.. ++.+|+++|+.+.--|.+..-.
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~-~g~ev~~~dL~~~~~P~~~~~~ 59 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAH-PNDTVVELDLYKEELPYVGVDM 59 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHC-TTSEEEEEEGGGSCCCCCCHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCCeEEEEECCCCCCCcCCHHH
Confidence 4789999999864 333 456788888887764 4679999999875447766543
No 27
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=89.00 E-value=1.4 Score=36.61 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=36.3
Q ss_pred cceEEEEEcCCC---chHH-HHHHHHHHHHhhhcCCCeEEEEEecc--ccccCCchh
Q 047228 156 TKNVLILMSDTG---GGHR-ASAEAIRDAFKIEFGDEYRIFVKDVC--KEYAGWPLN 206 (280)
Q Consensus 156 ~kRVLILSAStG---gGH~-qAAeAIaEAL~~~~p~~veV~IVD~L--e~isP~l~~ 206 (280)
||||||+++|.- +|+. +.|+++.+.+++.. ++.+|+++|+. +.--|....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g-~~~~v~~~dL~~~~~~~~~~~~ 56 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETN-PSDEIEILDVYAPETNMPEIDE 56 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTCGGGCCCCCCH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhC-CCCeEEEeeCCcccCCCCcCCH
Confidence 578999999975 4544 56888899988763 35799999998 665455543
No 28
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=88.71 E-value=0.78 Score=38.21 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=32.1
Q ss_pred cceEEEEEcCC--CchHHHHHHHHHHH-HhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDT--GGGHRASAEAIRDA-FKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSASt--GgGH~qAAeAIaEA-L~~~~p~~veV~IVD~Le 198 (280)
||||||+++|. +|-=.+.|++|++. +.+. +.+++++|+-+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~---g~~v~~~dl~~ 44 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARS---DSQGRHIHVID 44 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHS---SEEEEEEEGGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 67899999997 55567889999999 8764 56899999754
No 29
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=88.47 E-value=1.5 Score=38.52 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhCCCEEEeCCc
Q 047228 247 AKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIISTHP 267 (280)
..++.+++++.+||+|++..+
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~ 100 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGD 100 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 467889999999999999544
No 30
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=88.22 E-value=2.3 Score=37.04 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcch
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPfp 269 (280)
...++.+++++.+||+|++..++.
T Consensus 83 ~~~~l~~~l~~~~pDvv~~~~~~~ 106 (375)
T 3beo_A 83 GLEGLDKVMKEAKPDIVLVHGDTT 106 (375)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSH
T ss_pred HHHHHHHHHHHhCCCEEEEeCCch
Confidence 456788999999999999954533
No 31
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=87.53 E-value=2.4 Score=37.42 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=26.5
Q ss_pred ccceEEEEEcC----CCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 155 RTKNVLILMSD----TGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 155 ~~kRVLILSAS----tGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
++||||+++.. ..||-...+..|.++|.+. +.+|.++
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~---G~~V~v~ 41 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASL---GHEVLVF 41 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHC---CCeEEEE
Confidence 46789999954 4467777788899999876 3355544
No 32
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=87.46 E-value=0.33 Score=43.28 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.1
Q ss_pred ceEEEEEc--CCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMS--DTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSA--StGgGH~qAAeAIaEAL~~~ 184 (280)
|||+|++. +.+||--..+..|.++|.+.
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~ 30 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA 30 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc
Confidence 57999985 56899999999999999775
No 33
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=87.41 E-value=1.1 Score=36.54 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=33.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
..++|+|++.|.-|.=...|++|++.+.+. +++|++.|+-+
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~---g~~v~~~~~~~ 43 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKT---GVGVDVVDLGA 43 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHT---TCEEEEEESSS
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHC---CCeEEEEECcC
Confidence 345899999998777789999999999764 56788888754
No 34
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=86.71 E-value=1.2 Score=34.86 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|||+|++.|..|-=...|++|++.+... ++++++.|+-+
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~---g~~v~~~~~~~ 39 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADA---GYEVDSRDAAS 39 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhc---CCeeEEEehhh
Confidence 4799999887655678999999999765 45777777654
No 35
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=86.52 E-value=0.96 Score=36.78 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|||+|++.|.-|.=...|++|++.+... +++|++.|+-+
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~---g~~v~~~~~~~ 39 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKT---GVAVEMVDLRA 39 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHT---TCCEEEEETTT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 5799999998777788999999999764 45787787653
No 36
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=86.47 E-value=2.4 Score=36.69 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=37.8
Q ss_pred ccceEEEEEcCCC----chH-HHHHHHHHHHHhhhcCCCe-EEEEEeccccccCCchhh
Q 047228 155 RTKNVLILMSDTG----GGH-RASAEAIRDAFKIEFGDEY-RIFVKDVCKEYAGWPLND 207 (280)
Q Consensus 155 ~~kRVLILSAStG----gGH-~qAAeAIaEAL~~~~p~~v-eV~IVD~Le~isP~l~~l 207 (280)
.|||||++.+|.= +|. .+.|+++.+.+++.. ++. +|+++|+.+.--|.+..-
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~-~~~~ev~~idL~~~~lp~~~~~ 60 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELI-SNNETIEQINLYDDVVPMIDKT 60 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHC-CSSCEEEEEETTTSCCCCCCHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhC-CCCCeEEEEECcCCCCCCCCHH
Confidence 4789999999862 333 456778888887764 366 999999987655766643
No 37
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=86.15 E-value=2 Score=38.06 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=32.9
Q ss_pred ccccceEEEEEcCCC-chHH-HHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 153 AERTKNVLILMSDTG-GGHR-ASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 153 ~~~~kRVLILSAStG-gGH~-qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
...||||||+++|.= +|.. +.|+++.+.+.+. +++++++|+-+.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~---g~eve~idL~~~ 76 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFF---GAEVKVFDPSGL 76 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHT---TCEEEECCCTTC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhC---CCEEEEEEhhcC
Confidence 345679999999863 4554 6788899988653 579999998663
No 38
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=85.94 E-value=3.5 Score=36.10 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhCCCEEEeCCc
Q 047228 246 YAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHP 267 (280)
...++.+++++.+||+|++..+
T Consensus 74 ~~~~l~~~l~~~~pDvv~~~~~ 95 (384)
T 1vgv_A 74 ILEGLKPILAEFKPDVVLVHGD 95 (384)
T ss_dssp HHHHHHHHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHHHhCCCEEEEeCC
Confidence 3468899999999999999654
No 39
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=85.92 E-value=0.72 Score=36.48 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=29.7
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|++++|++.|..|.=...|++|++.+... +++++++|.
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~---g~~v~~~~~ 38 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEA---GFTTETLHG 38 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHT---TCCEEEECC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHC---CCceEEecC
Confidence 56899999998877889999999999764 345655553
No 40
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=85.37 E-value=0.71 Score=37.65 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.7
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.|++++|++.|..|.=...|++|++.+... ++++++.|+-
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~---g~~v~~~~~~ 47 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAA---KLNVKLVNAG 47 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHH---TCCCEEEEGG
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHC---CCceEEeehh
Confidence 356899999997777778999999999765 3455555553
No 41
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=85.36 E-value=2 Score=37.23 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=47.9
Q ss_pred ceEEEEEcCC--CchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCch
Q 047228 157 KNVLILMSDT--GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 234 (280)
Q Consensus 157 kRVLILSASt--GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~ 234 (280)
||||+++.++ .||.......+.++|.+. +.+|.++-.-. ....... + -+...| ...+
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~---G~~V~v~~~~~-~~~~~~~-----~--~v~~~~---------~~~~- 59 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAAR---GHHVRVYTQSW-EGDCPKA-----F--ELIQVP---------VKSH- 59 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHT---TCCEEEEESEE-CSCCCTT-----C--EEEECC---------CCCS-
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhC---CCeEEEEecCC-CCCCCCC-----c--EEEEEc---------cCcc-
Confidence 5799997652 478888889999999876 33555443221 1111000 0 000001 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcch
Q 047228 235 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfp 269 (280)
.. ... ...+...+.+++++.+||+|++.++.+
T Consensus 60 ~~-~~~--~~~~~~~l~~~i~~~~~Dvv~~~~~~~ 91 (374)
T 2iw1_A 60 TN-HGR--NAEYYAWVQNHLKEHPADRVVGFNKMP 91 (374)
T ss_dssp SH-HHH--HHHHHHHHHHHHHHSCCSEEEESSCCT
T ss_pred cc-hhh--HHHHHHHHHHHHhccCCCEEEEecCCC
Confidence 01 011 122345788899999999999887644
No 42
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=83.02 E-value=2.6 Score=36.12 Aligned_cols=43 Identities=5% Similarity=0.024 Sum_probs=32.7
Q ss_pred cceEEEEEcCCC-ch-HHHHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 156 TKNVLILMSDTG-GG-HRASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 156 ~kRVLILSAStG-gG-H~qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
||||||+++|.- +| =.+.|+++.+++.+.. +.+|+++|+.+.-
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~--g~~v~~~dl~~~~ 45 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRN--NVDISFRTPFNSE 45 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHS--CCEEEEECTTTCC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhc--CCeEEEEEcccCC
Confidence 568999999863 34 4677899999997652 4688999987653
No 43
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=81.78 E-value=0.69 Score=39.64 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=31.7
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
||||||+.++--.+..+.++++.+++++. +.+|+++|+.+..
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~---g~ev~~~dL~~~~ 42 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQH---TDRFTVHELYAVY 42 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTC---TTTEEEEEHHHHC
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhC---CCeEEEEEchhcC
Confidence 67899999886555457899999998764 3478889987654
No 44
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=79.68 E-value=2.6 Score=35.24 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=29.1
Q ss_pred cceEEEEEcCC--CchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDT--GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSASt--GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|+||||+++|. +|==.+.|+++.+.+. .+.+++++|+.+
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~----~~~~v~~~dl~~ 42 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG----DRAQVSYLSYDR 42 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT----TSSEEEECCCSS
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC----CCCEEEEEeCcc
Confidence 68999999997 4434567888888774 256899999875
No 45
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=79.39 E-value=2.3 Score=38.01 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=27.3
Q ss_pred cccccceEEEEEcCC----------CchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 152 GAERTKNVLILMSDT----------GGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 152 ~~~~~kRVLILSASt----------GgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
...+||||||++..+ +||+...+..|.++|.+. +.+|.++
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~---G~~V~v~ 65 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ---GIEVDIY 65 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc---CCEEEEE
Confidence 455678999999643 589999999999999875 3455544
No 46
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=76.50 E-value=4.8 Score=35.68 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=31.1
Q ss_pred cceEEEEEcCCC-chH-HHHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 156 TKNVLILMSDTG-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 156 ~kRVLILSAStG-gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
||||||+++|.- +|. .+.|+++.+.+.+. +.+|+++|+.+.-
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~---g~eV~~~dL~~~~ 45 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKK---GWEVVESDLYAMN 45 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHT---TCEEEEEETTTTT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhC---CCeEEEEEccccC
Confidence 678999999864 344 45678888888653 5689999988653
No 47
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=75.92 E-value=3.9 Score=35.83 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.5
Q ss_pred cccceEEEEEcCCCc-----h-HHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 154 ERTKNVLILMSDTGG-----G-HRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 154 ~~~kRVLILSAStGg-----G-H~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
..||||||+.++--. + =.+.|+++.+.+++. +.+|+++|+-+
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~---g~ev~~~dL~~ 70 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRES---GHQVKITTVDQ 70 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhC---CCEEEEEECCC
Confidence 346789999988732 2 235667777777653 45888888764
No 48
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=75.58 E-value=4.1 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
|++++|++.|..|-=...|++|++.+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l 26 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI 26 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc
Confidence 56899999998777788999999988
No 49
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=75.33 E-value=3 Score=35.35 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=31.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
.+++|+|+++|..|.=...|++|++.+... ++++.+.|+-+
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~---g~~v~v~~l~~ 60 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSK---GFAPQVATLDS 60 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTT---TCCCEEEEGGG
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhC---CCceEEeeHHH
Confidence 356899999998888889999999999754 34556666544
No 50
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=74.38 E-value=5 Score=36.58 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=33.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+|+||+|++.|..|.=...|++|++.+.+. +++++++|+-+
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~---g~~v~~~~l~~ 295 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARST---GCETVLLEMTS 295 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEEGGG
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhC---CCeEEEEEcCc
Confidence 478999999998777788999999999764 46888888644
No 51
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=73.87 E-value=3.3 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=28.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|+|++.|..|-=...|++|++.+.+. +++|++.|+-+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~---g~~v~~~~~~~ 37 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIES---GKDVNTINVSD 37 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHT---TCCCEEEEGGG
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHC---CCeEEEEEhhh
Confidence 58899887766778999999999765 45677777654
No 52
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=73.75 E-value=6.3 Score=34.15 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=33.5
Q ss_pred ceEEEEEcCCCch--HHHHHHHHHHHHhhhcCCCeEEEEEeccccc-cCCc
Q 047228 157 KNVLILMSDTGGG--HRASAEAIRDAFKIEFGDEYRIFVKDVCKEY-AGWP 204 (280)
Q Consensus 157 kRVLILSAStGgG--H~qAAeAIaEAL~~~~p~~veV~IVD~Le~i-sP~l 204 (280)
|||||+.++--.+ =.+.|+++.+++++. +.+|+++|+.+.- .|.+
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~---g~ev~~~dL~~~~~~P~~ 49 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQ---GCTVTVSDLYAMNFEPRA 49 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHH---TCEEEEEETTTTTCCCCC
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEEhhhcCCcccC
Confidence 6899999886544 457788888888765 4689999998643 3544
No 53
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=73.00 E-value=2.8 Score=38.37 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=28.5
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
.||||||+ +.-++||..-+-+|.++|.++ +.+|.++-
T Consensus 19 ~~mrIl~~-~~~~~GHv~p~l~la~~L~~~---GheV~~~~ 55 (441)
T 2yjn_A 19 SHMRVVFS-SMASKSHLFGLVPLAWAFRAA---GHEVRVVA 55 (441)
T ss_dssp CCCEEEEE-CCSCHHHHTTTHHHHHHHHHT---TCEEEEEE
T ss_pred CccEEEEE-cCCCcchHhHHHHHHHHHHHC---CCeEEEEe
Confidence 45789988 555679999999999999876 34666543
No 54
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=72.58 E-value=4.2 Score=32.47 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|||+|++.|..|-=...|++|++.+... +++++|+-
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~-----~v~~~~~~ 37 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND-----VVTLHDVS 37 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT-----TEEEEETT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC-----CcEEEEcc
Confidence 5799999887666678899999998642 45555653
No 55
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=72.31 E-value=3.6 Score=35.03 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=27.3
Q ss_pred ccceEEEEEcCCC--chHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStG--gGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
++|+|+|++.|.- +==.+.|+++++.+ +.+++++++|+-+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~----~~~~~~~~idl~d 42 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA----EGRLEFHLLHIGD 42 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH----TTTEEEEECCGGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc----cCCCEEEEEeccc
Confidence 5788999998864 33445666665544 3468999999765
No 56
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=71.62 E-value=3.3 Score=34.33 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=22.6
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
.+.|+||||++.|..|-=...|++|++.+..
T Consensus 3 ~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~ 33 (193)
T 3d7n_A 3 TNSSSNTVVVYHSGYGHTHRMAEAVAEGAEA 33 (193)
T ss_dssp ---CCCEEEEECCSSSHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEEEECCChHHHHHHHHHHHHhhh
Confidence 4567899999999754445789999999864
No 57
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=70.93 E-value=9.4 Score=36.13 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=33.7
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccC
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAG 202 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP 202 (280)
..++|+|+++|.=|.=.+.|++|++.|.+. +++++++++.+....
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~---Gv~~~~~~~~d~~~~ 308 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEK---GFTPVVYKFSDEERP 308 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHT---TCEEEEEEECSSCCC
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhc---CCceEEEEeccCCCC
Confidence 345899999998777778899999999875 567766665544433
No 58
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=69.38 E-value=7.8 Score=29.31 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=28.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|+|++.|..|-=...|++|++.+... +++++++|+-+
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~---g~~v~~~~~~~ 38 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAA---GADVESVRFED 38 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHT---TCCEEEEETTS
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhC---CCeEEEEEccc
Confidence 78888886555567999999999764 45788888654
No 59
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=68.78 E-value=5.6 Score=31.72 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|||+|++.|..|-=...|++|++.+... ++++++|+-+
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~----~~v~~~~~~~ 38 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE----SIVDLNDIAN 38 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST----TTEEEEEGGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc----cceEEEEhhh
Confidence 5799999997766778999999998542 3466666543
No 60
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=68.68 E-value=4.4 Score=33.38 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=21.9
Q ss_pred ccccccceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 151 IGAERTKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 151 ~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
..++.+||+||++.|.-|-=..+|++|++.+.
T Consensus 8 ~~~~~~mkilIvY~S~tGnT~~vA~~Ia~~l~ 39 (171)
T 4ici_A 8 NSKHSNSKILVAYFSATGTTARAAEKLGAAVG 39 (171)
T ss_dssp -----CCCEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEEECCCChHHHHHHHHHHHhC
Confidence 34456789999999855444669999999984
No 61
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=68.01 E-value=8.1 Score=36.59 Aligned_cols=88 Identities=10% Similarity=0.081 Sum_probs=45.0
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcccc-CCCCCC--CcCCCccee-eecccccccceEEEEEcCCCchHHHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSF-DSDDDN--EEDGESTVE-LMQIGAERTKNVLILMSDTGGGHRASAE 175 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~-~~~~~~~~~kRVLILSAStGgGH~qAAe 175 (280)
|+|.+. |+++.+.++++.+.-..+..--.. ++.... .-|-|.--+ |.+-|-+...++-|++.+-...+.++|+
T Consensus 283 RqAi~~AiDr~~i~~~~~~g~~~~a~~~~p~~~~~~~~~~~~~yd~~kAk~LL~eaG~~~g~~l~l~~~~~~~~~~~~a~ 362 (509)
T 1uqw_A 283 REALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPNGFSTTLWSSHNHSTAQKVLQ 362 (509)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCEEECSSSSCTTSBTCCCCCCCCCCHHHHHHHHHHHTCTTCEEEEEEEECCSSSHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHhcCcceecccCCCCCCCCcccCCCCCCCHHHHHHHHHHcCCCCCceEEEEecCCCchHHHHHH
Confidence 466665 889999999876643322221111 111100 000000001 2233333334455555444567999999
Q ss_pred HHHHHHhhhcCCCeEEEE
Q 047228 176 AIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 176 AIaEAL~~~~p~~veV~I 193 (280)
+|++.|++. +++|.+
T Consensus 363 ~iq~~l~~i---GI~v~i 377 (509)
T 1uqw_A 363 FTQQQLAQV---GIKAQV 377 (509)
T ss_dssp HHHHHHHHT---TEEEEE
T ss_pred HHHHHHHHc---CCEEEE
Confidence 999999875 445543
No 62
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=67.88 E-value=1.8 Score=35.46 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
|+||||++.|..|-=...|++|++.+..
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~ 28 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDD 28 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCT
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhcc
Confidence 5789999999766566778888887743
No 63
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=67.87 E-value=8.3 Score=35.08 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=32.5
Q ss_pred cccceEEEEEcCCC-chH-HHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 154 ERTKNVLILMSDTG-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 154 ~~~kRVLILSAStG-gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
..++|||++++|.- +|. .+.|+++.+.+.+. +++++++|+-+.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~---G~eveiidL~dl 100 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFF---GAETRIFDPSDL 100 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHT---TCEEEEBCCTTC
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhC---CCEEEEEehhcC
Confidence 35679999999973 444 46788888888653 579999998764
No 64
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=67.51 E-value=8.4 Score=32.18 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCc-hH-HHHHHHHHHHHhhhcCCCeEEEEEeccccc
Q 047228 157 KNVLILMSDTGG-GH-RASAEAIRDAFKIEFGDEYRIFVKDVCKEY 200 (280)
Q Consensus 157 kRVLILSAStGg-GH-~qAAeAIaEAL~~~~p~~veV~IVD~Le~i 200 (280)
|||||+.+|.-. +. .+.|+++.+.+ .++.+|+++|+.+.-
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~----~~g~~v~~~dL~~~~ 42 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL----SKEHTVSTLDLYAEH 42 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS----CTTSEEEEEETTTTT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh----cCCCeEEEEEcccCC
Confidence 579999988543 32 34445555554 246799999998653
No 65
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=67.04 E-value=8.6 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=30.6
Q ss_pred ceEEEEEcCCC-ch-HHHHHHHHHHHHhhhc---CCCeEEEEEecccc
Q 047228 157 KNVLILMSDTG-GG-HRASAEAIRDAFKIEF---GDEYRIFVKDVCKE 199 (280)
Q Consensus 157 kRVLILSAStG-gG-H~qAAeAIaEAL~~~~---p~~veV~IVD~Le~ 199 (280)
|||||+++|.- +| =.+.|+++.+.+.+.. +++.+++++|+.+.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~ 48 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQI 48 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhc
Confidence 47999998863 33 3566888888886541 23679999998764
No 66
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=66.61 E-value=6.5 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
|||+|++.|.-|-=...|++|++.+..
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~ 27 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGK 27 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCT
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhcc
Confidence 479999988776677899999999864
No 67
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=66.06 E-value=10 Score=34.18 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=32.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.+|++|++.|..|-....|++|++.+... ++++++.|+-
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~---g~~v~~~~~~ 290 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDE---GCTVKLMWCK 290 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEETT
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 57899999999888888899999999754 4577777764
No 68
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=65.55 E-value=7.3 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=26.1
Q ss_pred cceEEEEEcCCC-chH-HHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTG-GGH-RASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStG-gGH-~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+|||||+++|.- +|. .+.|+++.+.+. .+.+++++|+-+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~----~g~~v~~~dl~~ 46 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP----PGMSIELADISG 46 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC----TTCEEEECCCTT
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc----CCCeEEEEeHHH
Confidence 358999999862 343 334666666654 356899999876
No 69
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=64.79 E-value=12 Score=34.02 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=28.4
Q ss_pred cccceEEEEEcCCCch--HHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 154 ERTKNVLILMSDTGGG--HRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 154 ~~~kRVLILSAStGgG--H~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
.++|||||+.++==.+ =.+.|++..+++++. +.+|+++|+.+.
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~---G~eV~v~DLy~~ 64 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQA---GHEVQVSDLYAM 64 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHT---TCEEEEEETTTT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHC---CCeEEEEEcccc
Confidence 4557899999863222 234567777788665 458999999753
No 70
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=64.16 E-value=4.2 Score=33.95 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
++-|++. .+..+...|++|++.|++.. ++++|++
T Consensus 100 ~l~l~~~-~~~~~~~~a~~i~~~l~~~i-~GI~v~i 133 (229)
T 3o6p_A 100 TMDILSS-DADSSKKTVEFVQGSIQDAL-DGVKVTV 133 (229)
T ss_dssp EEEEEEE-CSHHHHHHHHHHHHHHHHHS-TTEEEEE
T ss_pred EEEEEeC-CChHHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 4555553 35679999999999998733 1344443
No 71
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=63.43 E-value=15 Score=31.06 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=32.8
Q ss_pred cccceEEEEEcCCCch--HHHHHHHHHH----HHhhhcCCCeEEEEEecccccc
Q 047228 154 ERTKNVLILMSDTGGG--HRASAEAIRD----AFKIEFGDEYRIFVKDVCKEYA 201 (280)
Q Consensus 154 ~~~kRVLILSAStGgG--H~qAAeAIaE----AL~~~~p~~veV~IVD~Le~is 201 (280)
.-|+|||++++|...+ =.+.|+++.+ .+++. .++++++++|+-+.-.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~-~~g~eve~idL~d~~l 61 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSAR-GEALSVSTIELSELIP 61 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCHH
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhc-CCCceEEEEEHHhCCC
Confidence 3578999999997743 2456677777 55444 2378999999876543
No 72
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=63.25 E-value=13 Score=33.40 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=33.7
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
++.++++|++.|..|.=...|++|++.+.+. +++++++|+-+.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~---g~~v~~~~~~~~ 296 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSE---GVDVRVYCLHED 296 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTT---TCEEEEEETTTS
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhC---CCeEEEEECCCC
Confidence 4557899999997666678999999999753 568888887543
No 73
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=61.53 E-value=6.1 Score=31.53 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=21.5
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
+|+||||++.|.-|-=..+|++|++.+.
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~ 29 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIK 29 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHST
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhcc
Confidence 4678999999965444568999988873
No 74
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=60.41 E-value=11 Score=33.12 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhCCCEEEeCCcchhhH
Q 047228 246 YAKEVEAGLMEYKPDIIISVHPLMQHI 272 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHPfpa~V 272 (280)
...++.+++++.+||+|++..+.+...
T Consensus 87 ~~~~l~~~l~~~~~Dvv~~~~~~~~~~ 113 (394)
T 2jjm_A 87 LASKMAEVAQRENLDILHVHYAIPHAI 113 (394)
T ss_dssp HHHHHHHHHHHHTCSEEEECSSTTHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcchhHHHH
Confidence 346788899999999999987775543
No 75
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=60.34 E-value=8.7 Score=31.10 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
.|+|+||++.|.-|-=..+|++|++.+.
T Consensus 3 ~~~kilIvY~S~tG~T~~vA~~Ia~~l~ 30 (162)
T 3klb_A 3 NDRKILVAYFSCSGVTKAVAEKLAAITG 30 (162)
T ss_dssp GGSCEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHHhC
Confidence 4678999999876556679999999884
No 76
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=59.96 E-value=14 Score=35.05 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=44.4
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcccc--CCCC-CC-CcCCCccee-eecccccccceEEEEEcCC----CchH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCSF--DSDD-DN-EEDGESTVE-LMQIGAERTKNVLILMSDT----GGGH 170 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~-~~~~~~~~~kRVLILSASt----GgGH 170 (280)
|+|.+. |+++.+.++++.+.-..+..--.. ++.. .. +-+-|.--+ |.+-|-+...++-|++.+. ....
T Consensus 289 RqAl~~aiDr~~i~~~~~~g~~~~a~~~~p~~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~G~~l~l~~~~~~~~~~~~~ 368 (521)
T 3tpa_A 289 RQALHHATDKKAIVDAVYQGGGTVATNPFPDAVLGYNPHLPQYEFNLEKAKALLAEAGYPNGFETEIWVQPVVRPSNPNP 368 (521)
T ss_dssp HHHHHHTCCHHHHHHHHHTTSEEECSSSSCTTSTTCCTTCCCCCCCHHHHHHHHHHTTCTTCEEEEEECCSSCBTTBSCH
T ss_pred HHHHHHhhCHHHHHHHHhcCCceeccccCCCCccCcCCCCCCCCCCHHHHHHHHHHcCCCCCceEEEEEecCCCcCCccH
Confidence 466555 889999999887653333221111 1100 00 000000001 2233433334444444322 3457
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEE
Q 047228 171 RASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 171 ~qAAeAIaEAL~~~~p~~veV~I 193 (280)
.++|++|++.|++. +++|++
T Consensus 369 ~~~a~~iq~~l~~i---GI~v~i 388 (521)
T 3tpa_A 369 RRTAEIIQADWAKI---GVKAKL 388 (521)
T ss_dssp HHHHHHHHHHHHHT---TEEEEE
T ss_pred HHHHHHHHHHHHHc---CceEEE
Confidence 89999999999874 556654
No 77
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=59.35 E-value=28 Score=32.36 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=25.6
Q ss_pred ccccceEEEEEcCCC-chHHHHHHHHHHH--HhhhcCCCeEEEEEec
Q 047228 153 AERTKNVLILMSDTG-GGHRASAEAIRDA--FKIEFGDEYRIFVKDV 196 (280)
Q Consensus 153 ~~~~kRVLILSAStG-gGH~qAAeAIaEA--L~~~~p~~veV~IVD~ 196 (280)
..+++||++++.+++ +|-......+.+. +.+ .+++|.++..
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~---~~~~v~~~~~ 245 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQ---PDLQMHLFAT 245 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHC---TTEEEEEEES
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCc---ccEEEEEEEC
Confidence 356679999999986 4444444555666 332 3567776553
No 78
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=59.14 E-value=35 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=32.3
Q ss_pred cceEEEEE-cCCCchHHH-HHHHHHHHHhhhcCCCeEEEEEeccccccC
Q 047228 156 TKNVLILM-SDTGGGHRA-SAEAIRDAFKIEFGDEYRIFVKDVCKEYAG 202 (280)
Q Consensus 156 ~kRVLILS-AStGgGH~q-AAeAIaEAL~~~~p~~veV~IVD~Le~isP 202 (280)
+|+|+.+| +.+|--|.- ||++|+++-.++. -.+.|+.......-++
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G-~~ikVEtqgs~g~~n~ 49 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMG-NLIKVETQGATGIENE 49 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHT-CEEEEEEEETTEESSC
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCC-CEEEEEEecCccccCC
Confidence 35666666 799999975 5999999998773 4666666655444444
No 79
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=58.29 E-value=10 Score=34.22 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
|||||++. -+.||...+-+|.++|.++ +.+|.++
T Consensus 1 MrIl~~~~-~~~GH~~p~l~la~~L~~~---Gh~V~~~ 34 (416)
T 1rrv_A 1 MRVLLSVC-GTRGDVEIGVALADRLKAL---GVQTRMC 34 (416)
T ss_dssp CEEEEEEE-SCHHHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred CeEEEEec-CCCccHHHHHHHHHHHHHC---CCeEEEE
Confidence 57998854 4799999999999999876 3466654
No 80
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=57.94 E-value=17 Score=32.80 Aligned_cols=40 Identities=5% Similarity=0.134 Sum_probs=30.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
++.||||++...+.-...++.+|++.|++. +.++|++.+-
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~--g~f~V~~~~d 42 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENS--GRFDVDFVIS 42 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHT--TSEEEEEEEC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhc--CCEEEEEEeC
Confidence 467899998877655578889999999765 3478887754
No 81
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=57.39 E-value=8.6 Score=32.32 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=29.0
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEE-EEeccccccCCch
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIF-VKDVCKEYAGWPL 205 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~-IVD~Le~isP~l~ 205 (280)
++||||++++|.=.| +-..+|.+++.+..+.+++++ ++|+-+ + |.+.
T Consensus 3 ~~mkil~I~GS~r~~--s~t~~l~~~~~~~~~~g~~v~~~idL~~-l-P~~~ 50 (193)
T 3svl_A 3 EKLQVVTLLGSLRKG--SFNGMVARTLPKIAPASMEVNALPSIAD-I-PLYD 50 (193)
T ss_dssp -CEEEEEEECCCSTT--CHHHHHHHHGGGTSCTTEEEEECCCSTT-C-CCCC
T ss_pred CCCEEEEEEccCCCC--CHHHHHHHHHHHHccCCCEEEEEEeHHH-C-CCCC
Confidence 457899999886533 223344455544444578898 888877 3 5544
No 82
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=57.28 E-value=16 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=30.8
Q ss_pred cceEEEEEcCCCchHHH---HHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~q---AAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+|||+||....-..|.- .|+++.+++.+. +++|..+|..+
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~---G~~v~~~~~~~ 44 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREG---GIDAYPVDPKE 44 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT---TCEEEEECTTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHC---CCeEEEEecCc
Confidence 46899998766556665 788999999876 57888888753
No 83
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=55.64 E-value=9.7 Score=35.33 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=47.0
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKW 233 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~ 233 (280)
++++||||+ |+|- .|..|.+++.+. ++++..+|.-...... ....... .|.......
T Consensus 4 m~~~kiLI~----g~g~--~a~~i~~aa~~~---G~~~v~v~~~~~~~~~--------~~~~ad~------~~~i~~~~~ 60 (446)
T 3ouz_A 4 MEIKSILIA----NRGE--IALRALRTIKEM---GKKAICVYSEADKDAL--------YLKYADA------SICIGKARS 60 (446)
T ss_dssp TCCCEEEEC----CCHH--HHHHHHHHHHHT---TCEEEEEEEGGGTTCT--------HHHHSSE------EEEEECCTT
T ss_pred cccceEEEE----CCCH--HHHHHHHHHHHc---CCEEEEEEcCcccccc--------hHhhCCE------EEEcCCCCc
Confidence 356789984 6675 667777888765 6788888754332221 1111110 010000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhCCCEEEeCCcch
Q 047228 234 IHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLM 269 (280)
Q Consensus 234 ~~s~l~~~l~~l~~rkL~~lIee~kPDVIISTHPfp 269 (280)
. .. ..-.+.+.+++++.++|+|+.++-+.
T Consensus 61 ~-~~------~~d~~~l~~~~~~~~~d~i~p~~g~~ 89 (446)
T 3ouz_A 61 S-ES------YLNIPAIIAAAEIAEADAIFPGYGFL 89 (446)
T ss_dssp T-TG------GGCHHHHHHHHHHHTCSEEECCSSTT
T ss_pred c-cc------ccCHHHHHHHHHHhCcCEEEECCccc
Confidence 0 00 11125778888999999999887554
No 84
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=55.53 E-value=27 Score=27.07 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=30.7
Q ss_pred ccceEEEEEcCCCchHHH-HHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 155 RTKNVLILMSDTGGGHRA-SAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~q-AAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
+++||| +-++.|.|.-. +++.|++++.+.. -++++...++.+.
T Consensus 20 ~~kkIl-vvC~sG~gTS~ll~~kl~~~~~~~g-i~~~V~~~~~~~~ 63 (113)
T 1tvm_A 20 SKRKII-VACGGAVATSTMAAEEIKELCQSHN-IPVELIQCRVNEI 63 (113)
T ss_dssp SSEEEE-EESCSCSSHHHHHHHHHHHHHHHTT-CCEEEEEECTTTT
T ss_pred cccEEE-EECCCCHHHHHHHHHHHHHHHHHcC-CeEEEEEecHHHH
Confidence 355665 67889999988 7999999997762 2345666665543
No 85
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=55.43 E-value=20 Score=32.12 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=32.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.++++|++.|..|--...|++|++.+.+. ++++++.|+-
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~---g~~v~~~~~~ 289 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAG---GCEVKLFKLS 289 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 46899999998888899999999999754 4578877764
No 86
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=55.27 E-value=12 Score=31.73 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=28.6
Q ss_pred cceEEEEEcCCC--chHHHHHHHHHHHHhhhcCCCeEEE-EEeccccccCCchh
Q 047228 156 TKNVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIF-VKDVCKEYAGWPLN 206 (280)
Q Consensus 156 ~kRVLILSAStG--gGH~qAAeAIaEAL~~~~p~~veV~-IVD~Le~isP~l~~ 206 (280)
+||||++++|.= +==.+.|+++.+.+ +.+.+++ ++|+-+ + |.+..
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~----~~g~~v~~~idL~~-l-P~~~~ 53 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIA----PEGIAITPLGSIGT-F-PHYSQ 53 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHC----CTTEEEEECCCGGG-S-CCCCH
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHc----cCCCEEEEEEehhh-c-CCCCc
Confidence 468999999853 22334455555554 3467898 889876 3 55443
No 87
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=55.22 E-value=21 Score=33.56 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=46.8
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCcc--ccCCCCCC-CcCCCccee-eecccccc--cceEEEEEcCCCchHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGC--SFDSDDDN-EEDGESTVE-LMQIGAER--TKNVLILMSDTGGGHRAS 173 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~--~kRVLILSAStGgGH~qA 173 (280)
|+|.+. |+++.+.++++.+....+...- .++..... +-|-|.--+ |.+-|-+. +-++-|++.+-...+.++
T Consensus 265 RqAl~~aiDr~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~g~~l~l~l~~~~~~~~~~~~ 344 (486)
T 3rqt_A 265 REALDHIIDRQGIADHIYQGYAKPATSPFNDKIPYIKEPKLTKQNIEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKI 344 (486)
T ss_dssp HHHHHHHCCHHHHHHHTSTTSEEECSSSSCTTSTTCCCCCCCCCCHHHHHHHHHTTTCCSSSCEEEEEEECSSSTHHHHH
T ss_pred HHHHHHhcCHHHHHHHHhcCcceecCCCCCCCCCcccccccCCCCHHHHHHHHHHCCCCCCCceEEEEEecCCCccHHHH
Confidence 777766 8999999998876533332211 11111100 000000001 12233322 234545554444678899
Q ss_pred HHHHHHHHhhhcCCCeEEEEEe
Q 047228 174 AEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 174 AeAIaEAL~~~~p~~veV~IVD 195 (280)
|++|++.|++. +-.++++.+|
T Consensus 345 a~~iq~~l~~i-GI~v~i~~~~ 365 (486)
T 3rqt_A 345 AQVLQSDAKKA-NIEIDIKSVD 365 (486)
T ss_dssp HHHHHHHHHTT-TEEEEEEECS
T ss_pred HHHHHHHHHhc-CCEEEEEEec
Confidence 99999999764 2233444444
No 88
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=54.84 E-value=14 Score=33.84 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.5
Q ss_pred cceEEEEEcCC--------------CchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 156 TKNVLILMSDT--------------GGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 156 ~kRVLILSASt--------------GgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
+||||+++..+ .||....+..|.++|.+. +.+|.++
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~---G~~V~v~ 56 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM---GVQVDII 56 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhc---CCeEEEE
Confidence 47899999753 478888999999999876 3455554
No 89
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=54.30 E-value=13 Score=37.47 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=30.6
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHh-hhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFK-IEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~-~~~p~~veV~IVD~ 196 (280)
.|++|+|+++|..|-=...|++|++.+. +. ++++.+.|+
T Consensus 48 ~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~---g~~v~v~~l 87 (682)
T 2bpo_A 48 NNKNYLVLYASQTGTAEGFAKAFSKELVAKF---NLNVMCADV 87 (682)
T ss_dssp TTCSEEEEEECSSSHHHHHHHHHHHHHHHHH---CCCEEEEET
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHhHHhc---CCceEEeeh
Confidence 5678999999988778889999999997 43 345666654
No 90
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=59.15 E-value=2.7 Score=35.64 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=26.9
Q ss_pred ccccceEEEEEcCCC-chH-HHHHHHHHHHHhhhcCCCeEEEEE-eccc
Q 047228 153 AERTKNVLILMSDTG-GGH-RASAEAIRDAFKIEFGDEYRIFVK-DVCK 198 (280)
Q Consensus 153 ~~~~kRVLILSAStG-gGH-~qAAeAIaEAL~~~~p~~veV~IV-D~Le 198 (280)
+..+||||++++|.= +|. .+.|+++.+.+.+ +++++++ |+-+
T Consensus 3 ~~~~mkIliI~gS~r~~s~t~~la~~~~~~~~~----g~~v~~i~dl~~ 47 (199)
T 3s2y_A 3 TTSPLHFVTLLGSLRKASFNAAVARALPEIAPE----GIAITPLGSIGT 47 (199)
Confidence 345668999998863 333 3455666666542 5688888 8754
No 91
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=53.64 E-value=22 Score=33.33 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 168 GGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 168 gGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
..+.+.|++|++.|++. +++|.+
T Consensus 359 ~~~~~~a~~i~~~l~~i---GI~v~i 381 (507)
T 1dpe_A 359 PNARRMAEMIQADWAKV---GVQAKI 381 (507)
T ss_dssp SCHHHHHHHHHHHHHTT---TEEEEE
T ss_pred ccHHHHHHHHHHHHHHc---CCEEEE
Confidence 46899999999999774 456554
No 92
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=52.71 E-value=28 Score=33.59 Aligned_cols=33 Identities=3% Similarity=0.010 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
.+-+++.+-...+.++|++|++.|++. +++|.+
T Consensus 406 ~l~l~~~~~~~~~~~~a~~iq~~l~~i---GI~v~i 438 (603)
T 2d5w_A 406 EIEYVTTAGNVVRERTQQFFAEDLKKI---GIAVKI 438 (603)
T ss_dssp EEEEECBTTCHHHHHHHHHHHHHHHHT---TCEEEE
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHhc---CCEEEE
Confidence 344444444456889999999999774 455543
No 93
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=52.18 E-value=22 Score=31.20 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=31.9
Q ss_pred cccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 152 GAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 152 ~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
--+..++|+|+++|..|-=...|+.|++++. . ++++.+.|+-+
T Consensus 36 ~~~~~~kv~IlYgS~tGnte~~A~~La~~l~-~---g~~v~v~~l~~ 78 (219)
T 3hr4_A 36 TMASRVRVTILFATETGKSEALAWDLGALFS-C---AFNPKVVCMDK 78 (219)
T ss_dssp HHHTSCEEEEEEECSSSHHHHHHHHHHHHHT-T---TSEEEEEEGGG
T ss_pred HHhcCCcEEEEEECCchHHHHHHHHHHHHHH-c---CCCeEEEEccc
Confidence 3345578999999988888889999999873 2 35666666543
No 94
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=51.98 E-value=8.8 Score=35.48 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhCCCEEEeC
Q 047228 245 YYAKEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIIST 265 (280)
....++.+++++++||+|++.
T Consensus 101 ~~~~~l~~~l~~~kPD~Vi~~ 121 (403)
T 3ot5_A 101 RVMNGINEVIAAENPDIVLVH 121 (403)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 455789999999999999983
No 95
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=51.82 E-value=21 Score=33.92 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=43.8
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCccc--cCCCCCC--CcCCCcce-eeecccccccceEEEEEcCC----CchH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLGCS--FDSDDDN--EEDGESTV-ELMQIGAERTKNVLILMSDT----GGGH 170 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~-~~~~~~~~~~kRVLILSASt----GgGH 170 (280)
|+|.+. |+++.+.++++.+....+..--. .++.... +-|-|.-- -|.+-|-+...++-|++.+. ....
T Consensus 284 RqAi~~AiDr~~i~~~~~~g~~~~a~~~~p~~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~g~~l~l~~~~~~~~~~~~~ 363 (522)
T 3m8u_A 284 RQALNYAVDKNAIIDAVYRGAGVAAKNPLPPTIWGYNNEITGYEYSPEKAKQLLKEAGFENGFETDIWVQPVVRASNPNP 363 (522)
T ss_dssp HHHHHHTCCHHHHHHHTTTTSEEECSSSSCTTSTTCCTTCCCCCCCHHHHHHHHHHTTCTTCEEEEEECCSSCBTTBSCH
T ss_pred HHHHHHhcCHHHHHHHHhcCceeeccccCCCCcccccccCCcCCCCHHHHHHHHHHcCCCCCceEEEEEecccccCCchH
Confidence 466555 89999999988765333322111 1111000 00000000 12233333334444444332 2356
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEE
Q 047228 171 RASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 171 ~qAAeAIaEAL~~~~p~~veV~I 193 (280)
.++|++|++.|++. +++|++
T Consensus 364 ~~~a~~iq~~l~~i---GI~v~i 383 (522)
T 3m8u_A 364 RRMAELVQSDWEKV---GVKSKL 383 (522)
T ss_dssp HHHHHHHHHHHHTT---TEEEEE
T ss_pred HHHHHHHHHHHHHc---CceEEE
Confidence 89999999999864 566654
No 96
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=51.09 E-value=30 Score=32.49 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=24.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++-|++.+-+..+.++|++|++.|++. +-.+++..+|
T Consensus 341 ~l~l~~~~~~~~~~~~a~~iq~~l~~i-GI~v~i~~~~ 377 (502)
T 2noo_A 341 RIELSFIGTDALSKSMAEIIQADMRQI-GADVSLIGEE 377 (502)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTT-TCEEEEEEEC
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHhc-CcEEEEEecc
Confidence 344555344577999999999999765 3344444454
No 97
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=50.67 E-value=14 Score=31.42 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=32.6
Q ss_pred eecccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 148 LMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 148 ~~~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
...+..++++.|.|.+.+=|.|=...|-+|+.+|. . +..|-++|+-
T Consensus 19 ~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~---g~~VlliD~D 64 (267)
T 3k9g_A 19 PGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-K---NNKVLLIDMD 64 (267)
T ss_dssp -------CCEEEEECCSSSSSCHHHHHHHHHHHHT-T---TSCEEEEEEC
T ss_pred cccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-C---CCCEEEEECC
Confidence 33444556777778888899999999999999997 5 3578888875
No 98
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=50.33 E-value=24 Score=30.93 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=32.9
Q ss_pred ccccceEEEEEcCCCchHHH---HHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 153 AERTKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~q---AAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
..+++||+||+...-+=|.- .|++|.++|++. +++|..+|.-
T Consensus 10 ~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~---g~~v~~i~~~ 54 (317)
T 4eg0_A 10 PKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDA---GIDAHPFDPA 54 (317)
T ss_dssp GGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT---TCEEEEECTT
T ss_pred hhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 34568999999877666754 799999999876 6789999943
No 99
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=49.67 E-value=31 Score=26.50 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=27.8
Q ss_pred ccccccceEEEEEcCCCchHHHHHH-HHHHHHhhhcCCCeEEEEEec
Q 047228 151 IGAERTKNVLILMSDTGGGHRASAE-AIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 151 ~~~~~~kRVLILSAStGgGH~qAAe-AIaEAL~~~~p~~veV~IVD~ 196 (280)
++..+|+||| +-++.|-|.-.-++ .|++++.+..-+++++...++
T Consensus 13 ~~~~~~~kIl-vvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~ 58 (110)
T 3czc_A 13 MGRGSMVKVL-TACGNGMGSSMVIKMKVENALRQLGVSDIESASCSV 58 (110)
T ss_dssp -----CEEEE-EECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECH
T ss_pred ccccCCcEEE-EECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeH
Confidence 3455567776 77888999998888 999999765211144544443
No 100
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=48.95 E-value=20 Score=27.51 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
+|| ++-++.|.|+-..|+.|++++.+.. -++++...++.+
T Consensus 5 mkI-lvvC~~G~~TSll~~kl~~~~~~~g-i~~~i~~~~~~~ 44 (109)
T 2l2q_A 5 MNI-LLVCGAGMSTSMLVQRIEKYAKSKN-INATIEAIAETR 44 (109)
T ss_dssp EEE-EEESSSSCSSCHHHHHHHHHHHHHT-CSEEEEEECSTT
T ss_pred eEE-EEECCChHhHHHHHHHHHHHHHHCC-CCeEEEEecHHH
Confidence 455 5778888888899999999998763 245565555443
No 101
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=47.47 E-value=28 Score=31.16 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=34.0
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.|++|+|.+.+-|-|=...|-+++.++.+. +..|-++|.-
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D 51 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARS---GKKTLVISTD 51 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEeCC
Confidence 458899999999999999999999999765 4477788864
No 102
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=46.75 E-value=15 Score=34.59 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=24.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh-hcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKI-EFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~-~~p~~veV~IVD 195 (280)
.+-|++.+ +..+..+|++|++.|++ . +-.+++..+|
T Consensus 360 ~l~l~~~~-~~~~~~~a~~iq~~l~~~i-GI~v~i~~~~ 396 (517)
T 1jet_A 360 TFDLLYNT-SDLHKKLAIAVASIWKKNL-GVNVNLENQE 396 (517)
T ss_dssp EEEEEEES-CHHHHHHHHHHHHHHHHHH-CCEEEEEEEC
T ss_pred EEEEEecC-CchHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 34444443 67899999999999986 5 3344444454
No 103
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=45.29 E-value=24 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=25.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
++-|++.+-...+.+.|++|++.|++. +-.++++.+|.
T Consensus 129 ~l~l~~~~~~~~~~~~a~~iq~~l~~i-Gi~v~i~~~~~ 166 (258)
T 3lvu_A 129 ALRFLLRQGDSDMQTVLEIYTRALERL-GIAAQIEKVDN 166 (258)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHTT-TCCCEEEEECH
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHc-CCeeEEEecCH
Confidence 344455443467899999999999874 44556665553
No 104
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=45.27 E-value=17 Score=29.25 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
||+|++.|..|-=...|++|++.+..
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~ 26 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGA 26 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGG
T ss_pred CEEEEEECCCchHHHHHHHHHHHhcc
Confidence 58999999877778899999999965
No 105
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=43.98 E-value=14 Score=33.95 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhCCCEEEeCCc
Q 047228 244 AYYAKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 244 ~l~~rkL~~lIee~kPDVIISTHP 267 (280)
.....++.+++++.+||+|++.-.
T Consensus 97 ~~~~~~l~~~l~~~kPDvVi~~g~ 120 (396)
T 3dzc_A 97 SKILLGMQQVLSSEQPDVVLVHGD 120 (396)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHHHHhcCCCEEEEECC
Confidence 345678999999999999998543
No 106
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=43.70 E-value=25 Score=31.25 Aligned_cols=33 Identities=18% Similarity=-0.002 Sum_probs=24.9
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|++|||+. +| +.++.+.+++.+. ++++..+|..
T Consensus 1 M~~Ililg----~g--~~~~~~~~a~~~~---G~~v~~~~~~ 33 (365)
T 2z04_A 1 MLTVGILG----GG--QLGWMTILEGRKL---GFKFHVLEDK 33 (365)
T ss_dssp -CEEEEEC----CS--HHHHHHHHHHGGG---TCEEEEECSS
T ss_pred CCEEEEEC----CC--HHHHHHHHHHHHC---CCEEEEEeCC
Confidence 67899984 45 6788899998776 5788888864
No 107
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=43.08 E-value=43 Score=31.59 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=23.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
.+-+++.+-...+..+|++|++.|++. +-.+++..+|
T Consensus 361 ~l~l~~~~~~~~~~~~a~~iq~~l~~i-GI~v~i~~~~ 397 (520)
T 1xoc_A 361 SFTLKTNQGNKVREDIAVVVQEQLKKI-GIEVKTQIVE 397 (520)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTT-TCEEEEEEEC
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 444555443456899999999999764 3344444444
No 108
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=42.89 E-value=37 Score=30.89 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=35.0
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
...|++|+|.|.+=|-|=...|-+++.++.+. +..|-++|.-
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D 63 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVSTD 63 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEECC
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 35678899999999999999999999999765 4478888853
No 109
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=42.58 E-value=15 Score=29.29 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=19.4
Q ss_pred cceEEEEEcCC-CchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 156 TKNVLILMSDT-GGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 156 ~kRVLILSASt-GgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
||||||+++|. .+|+ .++|.+++.+. ++++.+|+.+.
T Consensus 3 mMkilii~~S~r~~g~---t~~la~~~~~~----~~~~~~~l~~~ 40 (184)
T 1rli_A 3 AMKIAVINGGTRSGGN---TDVLAEKAVQG----FDAEHIYLQKY 40 (184)
T ss_dssp --CEEEEESSCSSCCH---HHHHHHHHHTT----TCCEEEEC---
T ss_pred CcEEEEEECCCCCCcc---HHHHHHHHHcC----CeEEEEEcCCC
Confidence 46899999885 3355 34555555432 24556676544
No 110
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.47 E-value=9.2 Score=34.39 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=24.2
Q ss_pred cccceEEEEEcCCCchH--HHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 154 ERTKNVLILMSDTGGGH--RASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH--~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
..|+||||+ +|| ...|..|.++|++. +++|..++.-
T Consensus 2 ~~m~~vLiV-----~g~~~~~~a~~l~~aL~~~---g~~V~~i~~~ 39 (259)
T 3rht_A 2 NAMTRVLYC-----GDTSLETAAGYLAGLMTSW---QWEFDYIPSH 39 (259)
T ss_dssp ----CEEEE-----ESSCTTTTHHHHHHHHHHT---TCCCEEECTT
T ss_pred CCCceEEEE-----CCCCchhHHHHHHHHHHhC---CceEEEeccc
Confidence 357899999 477 67889999999764 4566666544
No 111
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=42.16 E-value=73 Score=25.41 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccceEEEEE-cCCCchHH-HHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILM-SDTGGGHR-ASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILS-AStGgGH~-qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
++|+|+.+| +.+|--|. .||+||+++-.+. +-.+.|+......
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~-G~~ikVEtqGs~G 48 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVEA-GYEVKIETQGADG 48 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHHT-SSEEEEEEEETTE
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 456677666 68998886 5899999999876 3455555444443
No 112
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=41.69 E-value=26 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=26.1
Q ss_pred cccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 152 GAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 152 ~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
..++||||||+ |+|- .|..+.+++.+. ++++..+|...
T Consensus 2 ~~~~~k~ILI~----g~g~--~~~~i~~a~~~~---G~~vv~v~~~~ 39 (461)
T 2dzd_A 2 ETRRIRKVLVA----NRGE--IAIRVFRACTEL---GIRTVAIYSKE 39 (461)
T ss_dssp -CCCCSEEEEC----SCHH--HHHHHHHHHHHH---TCEEEEEECGG
T ss_pred CCCcCcEEEEE----CCcH--HHHHHHHHHHHc---CCEEEEEECCc
Confidence 34567899997 5664 456677777765 57888888653
No 113
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=41.40 E-value=38 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=24.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++-|++.+-...+.++|++|++.|++. +-.+++..+|
T Consensus 331 ~l~l~~~~~~~~~~~~a~~i~~~l~~i-GI~v~i~~~~ 367 (496)
T 3t66_A 331 HFTVLTYGSRAELPLIAQVFQSNAKQI-GIEVEIRQIE 367 (496)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHT-TCEEEEEECS
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhc-CCEEEEEEec
Confidence 455555444567889999999999874 3344444444
No 114
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=41.39 E-value=15 Score=34.59 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=47.4
Q ss_pred CCccch---HHHHHHHHhcCCCCCCCCCCc--cccCCCCC-CCcCCCcce-eeecccccccc--eEEEEEcCCCchHHHH
Q 047228 103 KKAVSL---TEKVLQRVYGNHSTSSSSNLG--CSFDSDDD-NEEDGESTV-ELMQIGAERTK--NVLILMSDTGGGHRAS 173 (280)
Q Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~k--RVLILSAStGgGH~qA 173 (280)
|+|.+. |+++.+.+|++.+....+..- ........ ..-+-|.-- -|.+-|-+... .++.++.+.+..+.+.
T Consensus 306 RqAi~~AiDr~~i~~~~~~g~~~pa~~~~p~~~~~~~~~~~~~~d~~kAk~LL~eAG~~~g~~~~~~~~~~~~~~~~~~~ 385 (529)
T 4gl8_A 306 RKALSFAIDRKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGYPNGNNFPLLKVKYNTSDSQRKI 385 (529)
T ss_dssp HHHHHHTSCHHHHHHHTTCSCCEECSCSSCCBTTBCCCCCCCSCCHHHHHHHHHHHTCGGGTTCCCEEEEEESCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHhCCCceeCccCCCCCCCccccccccccCHHHHHHHHHHhhhccCCcceEEEEeccCCchHHHH
Confidence 466655 899999999887743222211 00000000 000000000 11222332222 2456667788899999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEe
Q 047228 174 AEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 174 AeAIaEAL~~~~p~~veV~IVD 195 (280)
|++|++.+.+..+-.++++.+|
T Consensus 386 ~~~i~~~~l~~iGI~v~i~~~~ 407 (529)
T 4gl8_A 386 AEFIQNQWKKNLNINVQLENEE 407 (529)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEC
T ss_pred HHHHHHHHHHhcCeEEEEEecc
Confidence 9999987655433455555555
No 115
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=40.48 E-value=28 Score=32.78 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=23.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++-+++ ..+..+.+.|++|++.|++..+-.+++..+|
T Consensus 350 ~l~l~~-~~~~~~~~~a~~i~~~l~~~iGI~v~i~~~~ 386 (506)
T 3zs6_A 350 TFTLTY-NTNDLHKKVALFAASEWRTKLGVTAKLENVE 386 (506)
T ss_dssp EEEEEE-ESCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred eEEEEE-cCCchHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 444444 3367788999999999987223344444444
No 116
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=40.44 E-value=27 Score=31.71 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhCCCEEEeCCc-chhhHHHHhh
Q 047228 246 YAKEVEAGLMEYKPDIIISVHP-LMQHIPLWVL 277 (280)
Q Consensus 246 ~~rkL~~lIee~kPDVIISTHP-fpa~VlL~vL 277 (280)
....+.+.+++.+||+||++.. ++..++++.+
T Consensus 132 ~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~l 164 (441)
T 2yjn_A 132 LIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVT 164 (441)
T ss_dssp HHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCcchhHHHHHHHc
Confidence 3467778889999999999863 3444444443
No 117
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=40.22 E-value=23 Score=31.97 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
|||+|++..+ .||..-.-+|.++|.++ +.+|.++
T Consensus 1 MrIli~~~gt-~Ghv~p~~~La~~L~~~---Gh~V~v~ 34 (404)
T 3h4t_A 1 MGVLITGCGS-RGDTEPLVALAARLREL---GADARMC 34 (404)
T ss_dssp -CEEEEEESS-HHHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CeEEEEeCCC-CccHHHHHHHHHHHHHC---CCeEEEE
Confidence 5799888654 59999999999999876 2356553
No 118
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=39.09 E-value=33 Score=31.91 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.0
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
...++++++++..+|+|=...|.+|++.+
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 44567899999999999999999999886
No 119
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=38.41 E-value=19 Score=31.57 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhCCCEEEeCCc
Q 047228 247 AKEVEAGLMEYKPDIIISVHP 267 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIISTHP 267 (280)
.+.|.++|++++||+|++.+|
T Consensus 86 ~~~l~~~ir~~~PdvV~t~~~ 106 (242)
T 2ixd_A 86 IREIVKVIRTYKPKLVFAPYY 106 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 368889999999999998655
No 120
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=37.81 E-value=28 Score=32.86 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=23.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++-|++ ..+..+.+.|++|++.|++..+-.++++.+|
T Consensus 362 ~l~l~~-~~~~~~~~~a~~i~~~l~~~iGI~v~i~~~~ 398 (519)
T 3o9p_A 362 KLTLLY-NTSENHQKIAIAVASMWKKNLGVDVKLQNQE 398 (519)
T ss_dssp EEEEEE-ESCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred eEEEEe-cCCchhHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 443444 3467889999999999987233344555454
No 121
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=37.69 E-value=29 Score=27.70 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
++++.++...|+|=...|++|++.+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 2 RGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3488899999999999999999986
No 122
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=37.68 E-value=20 Score=31.94 Aligned_cols=24 Identities=13% Similarity=0.436 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhCCCEEEeCCcc
Q 047228 245 YYAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIISTHPf 268 (280)
-..+.|.++|++++||+||+.++.
T Consensus 135 ~l~~~l~~~ir~~~PdvV~t~~~~ 158 (273)
T 3dff_A 135 EVADDIRSIIDEFDPTLVVTCAAI 158 (273)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC
Confidence 355789999999999999997655
No 123
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=37.55 E-value=1.1e+02 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=26.5
Q ss_pred cceEEEEEcCCCchHH-HHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHR-ASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~-qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+-+.|..+.+|--|. .||++|+++-.++ +-.+.|+..-..
T Consensus 3 ~kivaVTaCptGiAhTymAaeaL~~aA~~~-G~~ikVEtqGs~ 44 (106)
T 2r4q_A 3 AKILAVTACPTGIAHTFMAADALKEKAKEL-GVEIKVETNGSS 44 (106)
T ss_dssp CCEEEEEECSCC--CHHHHHHHHHHHHHHH-TCCEEEEEEETT
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 4434445578998886 7899999999877 345566554443
No 124
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=37.11 E-value=46 Score=27.21 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=31.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++.|.|.+.+-|.|=...|-+|+.+|.+. +..|-++|.-
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~D 40 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDR---GRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCC
Confidence 35566677788899999999999999765 4578888874
No 125
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=36.88 E-value=53 Score=31.25 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEE
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFV 193 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~I 193 (280)
.+-|++.+-...+.++|++|++.|++. +++|++
T Consensus 361 ~l~l~~~~~~~~~~~~a~~iq~~l~~i---GI~v~i 393 (528)
T 3ry3_A 361 KITLWYTSGDTTRRDLAQALRSMLKPI---GIDVDL 393 (528)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHGGG---TCEEEE
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHc---CCEEEE
Confidence 344444433356789999999999865 445544
No 126
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=36.69 E-value=1.2e+02 Score=23.99 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=26.7
Q ss_pred eEEEEE-cCCCchHH-HHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 158 NVLILM-SDTGGGHR-ASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 158 RVLILS-AStGgGH~-qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+|+.+| +.+|--|. .||++|+++-.++ +-.+.|+..-.
T Consensus 4 kivaVTaCptGiAhTymAaeaL~~aA~~~-G~~ikVEtqGs 43 (106)
T 2r48_A 4 KLLAITSCPNGIAHTYMAAENLQKAADRL-GVSIKVETQGG 43 (106)
T ss_dssp EEEEEEECSSCSHHHHHHHHHHHHHHHHH-TCEEEEEEEET
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 455555 78999886 7899999999877 33555544443
No 127
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=36.57 E-value=21 Score=31.64 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhCCCEEEeCCcc
Q 047228 245 YYAKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIISTHPf 268 (280)
-..+.|.++|++++||+|++.++.
T Consensus 132 ~~~~~l~~~ir~~~PdvV~t~~~~ 155 (270)
T 3dfi_A 132 AIREDIESMIAECDPTLVLTCVAI 155 (270)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC
Confidence 356789999999999999997654
No 128
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=36.06 E-value=42 Score=31.28 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=24.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
|+++++++..+|+|-...|++|++.+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 557999999999999999999999873
No 129
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=35.59 E-value=31 Score=32.51 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhH
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDM 208 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li 208 (280)
+|||||+.++--.+...+.+++.+++... + ++++.|+.+.. |.+...+
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~~--~--~v~v~dL~~~~-p~~~~d~ 283 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQARTL--E--GVEIRSLYQLY-PDFNIDI 283 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHTS--S--SEEEEEHHHHC-TTSCCCH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhcC--C--CEEEEEchhhC-CCCcHHH
Confidence 37899999997666555888898888653 2 57777876544 4433333
No 130
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=35.56 E-value=28 Score=27.21 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=24.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
|.++++|+.-.|+|=...|++|++.+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999999874
No 131
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=35.08 E-value=29 Score=26.86 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=23.6
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
|+++++|+...|+|=...|+.|++.+.
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999873
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=34.73 E-value=35 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
++++++|+...|+|=...|++|++.+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456888999999999999999999873
No 133
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.71 E-value=39 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.2
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHH
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL 181 (280)
.|+++++|+...|+|=...|+.|++.+
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 134
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=34.24 E-value=47 Score=28.06 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=32.1
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++++.|.|.+.+-|.|=...|-+|+.+|.+. +..|-++|+-
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D 44 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARL---GKRVLLVDLD 44 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHC---CCCEEEEECC
Confidence 3456666667888899999999999999765 4578888865
No 135
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=34.14 E-value=47 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
||||+|| |||- .+..+..+.++. ++++.++|...
T Consensus 1 MK~I~il----Ggg~--~g~~~~~~Ak~~---G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLV----GGKL--QGFEAAYLSKKA---GMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEE----CCSH--HHHHHHHHHHHT---TCEEEEEESCT
T ss_pred CCEEEEE----CCCH--HHHHHHHHHHHC---CCEEEEEeCCC
Confidence 7899998 5663 233344455444 67999998653
No 136
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=33.90 E-value=59 Score=27.19 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=31.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++.|.|.+.+-|.|=...|-+|+.+|.+. +..|-++|.-
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~D 40 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQL---GHDVTIVDAD 40 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 45677778888999999999999999765 4478888874
No 137
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=33.30 E-value=19 Score=31.12 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhCCCEEEeCCcc
Q 047228 247 AKEVEAGLMEYKPDIIISVHPL 268 (280)
Q Consensus 247 ~rkL~~lIee~kPDVIISTHPf 268 (280)
.+.|.++|++++||+|++.+|-
T Consensus 84 ~~~l~~~ir~~~P~~V~t~~~~ 105 (227)
T 1uan_A 84 RLKLAQALRRLRPRVVFAPLEA 105 (227)
T ss_dssp HHHHHHHHHHHCEEEEEEECSC
T ss_pred HHHHHHHHHHhCCCEEEeCCCC
Confidence 3688999999999999986653
No 138
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=33.22 E-value=36 Score=33.82 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
..++|+|+++|.-|-=...|+.|++.+.+. ++++.+.|+
T Consensus 17 ~~~~i~I~YgS~tGnte~~A~~la~~l~~~---g~~~~v~~~ 55 (618)
T 3qe2_A 17 TGRNIIVFYGSQTGTAEEFANRLSKDAHRY---GMRGMSADP 55 (618)
T ss_dssp HTCSEEEEEECSSSHHHHHHHHHHHHGGGG---TCCEEEECG
T ss_pred cCCeEEEEEECChhHHHHHHHHHHHHHHhC---CCceEEech
Confidence 346799999998888888999999998654 345655554
No 139
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=33.10 E-value=52 Score=29.37 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=24.9
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
++|+|||+ |+| +.++.+.+++.+. ++++..+|...
T Consensus 10 ~~~~ili~----g~g--~~~~~~~~a~~~~---G~~v~~~~~~~ 44 (391)
T 1kjq_A 10 AATRVMLL----GSG--ELGKEVAIECQRL---GVEVIAVDRYA 44 (391)
T ss_dssp TCCEEEEE----SCS--HHHHHHHHHHHTT---TCEEEEEESST
T ss_pred CCCEEEEE----CCC--HHHHHHHHHHHHc---CCEEEEEECCC
Confidence 45789998 445 3577888888765 56888888653
No 140
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=32.64 E-value=49 Score=26.26 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=31.9
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+.|.|.+.+=|.|=...|-.|+.++.+. +..|-++|.-
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~---g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRS---GYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 45667777889999999999999999764 4578888874
No 141
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=32.62 E-value=57 Score=29.28 Aligned_cols=40 Identities=5% Similarity=0.062 Sum_probs=33.5
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
..++|+|+|.+-|-|=...|-+|+.++.+. +..|-++|.-
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~---G~rVllvD~D 56 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKV---RSSVLLISTD 56 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTS---SSCEEEEECC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 457899999999999999999999999765 4578888763
No 142
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=32.14 E-value=52 Score=30.08 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=34.4
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
...+++|+|+|..=|.|=...|-+++.++.+. +..|.++|.-
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~---g~~vllid~D 53 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV---RRSVLLLSTD 53 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS---SSCEEEEECC
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 34567899999999999999999999999764 3477778864
No 143
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=32.14 E-value=66 Score=28.65 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=33.4
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhh-cC-CCeEEEEEe
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIE-FG-DEYRIFVKD 195 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~-~p-~~veV~IVD 195 (280)
+...+.|-|.+.+.||+-...|++|++.+.+. .. .+++|++.+
T Consensus 28 a~~~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~ 72 (327)
T 4ddd_A 28 SLNREYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISS 72 (327)
T ss_dssp CCCCEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEEC
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence 44456788999999999999999999999875 11 366777655
No 144
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=32.08 E-value=48 Score=27.19 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhC--CCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEYK--PDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~k--PDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++.. ||+|+|+.-..+.-+++++++
T Consensus 167 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~ 201 (272)
T 3o74_A 167 QRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQA 201 (272)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHH
Confidence 356777888775 999999998888777887765
No 145
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=31.87 E-value=60 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=31.3
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++.|.|.+.+-|.|=...|-+|+.+|.+. +..|-++|.-
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~D 40 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQK---GKKTVVIDFA 40 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 35566667888899999999999999865 4578888864
No 146
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=31.41 E-value=44 Score=27.97 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCchHH--H----HHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHR--A----SAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~--q----AAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
-||||+.++-=.++. + .|+++.+.+.+. +.+|+++|+.+
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~---g~~v~~~dL~~ 57 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL---GHDVRIVRADS 57 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHT---TCEEEEEESSS
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc---CCEEEEEeCCc
Confidence 379999988664444 3 455555555543 46899999865
No 147
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=30.85 E-value=47 Score=31.12 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=32.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
|++|++++.+=|.|=...|-+++.++.+. +..|-++|.
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~---g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQ---GKRVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHC---CCCeEEEeC
Confidence 67899999999999999999999999765 447888997
No 148
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=30.73 E-value=1.1e+02 Score=24.40 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=31.0
Q ss_pred eEEEEEcC-CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 158 NVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 158 RVLILSAS-tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
=+|-|+.+ --..-..|=+.|++.+++..++.++.+|+|+.+
T Consensus 8 ~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~ 49 (105)
T 1wwj_A 8 YVLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLK 49 (105)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTT
T ss_pred eEEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 45666654 445666777788888887777899999999985
No 149
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=30.69 E-value=58 Score=29.49 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=26.3
Q ss_pred ceEEEEEcCC-----CchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSDT-----GGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSASt-----GgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
||||+++..+ .||=......|.++|.+. +.+|.++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~---G~~V~vi 40 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAH---GVRTRTL 40 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTT---TCEEEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHc---CCeEEEE
Confidence 5899999865 467778888999999765 3466554
No 150
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=30.48 E-value=60 Score=29.66 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=24.1
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++|+|||+ |+| +.+..+.+++.+. ++++..+|..
T Consensus 18 ~~~~ili~----g~g--~~g~~~~~a~~~~---G~~v~~v~~~ 51 (433)
T 2dwc_A 18 SAQKILLL----GSG--ELGKEIAIEAQRL---GVEVVAVDRY 51 (433)
T ss_dssp TCCEEEEE----SCS--HHHHHHHHHHHHT---TCEEEEEESS
T ss_pred CCCEEEEE----CCC--HHHHHHHHHHHHC---CCEEEEEECC
Confidence 35689998 555 4667777777654 5688888864
No 151
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=29.68 E-value=63 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+++|+|| ||| +.|+.+.+++.+. ++++.++|
T Consensus 24 ~~~I~il----GgG--~lg~~l~~aa~~l---G~~v~~~d 54 (403)
T 3k5i_A 24 SRKVGVL----GGG--QLGRMLVESANRL---NIQVNVLD 54 (403)
T ss_dssp CCEEEEE----CCS--HHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCEEEEE----CCC--HHHHHHHHHHHHC---CCEEEEEE
Confidence 5789998 566 6888999999876 67899999
No 152
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=29.35 E-value=54 Score=29.11 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.6
Q ss_pred cceEEEEEcCCCchHHH---HHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRA---SAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~q---AAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.+||+||....++=|.- .|.++.++|++. +++|..+|.-
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~---g~~v~~i~~~ 44 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKE---KYEPLYIGIT 44 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT---TEEEEEEEEC
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhc---CCEEEEEEEc
Confidence 46899998655555654 788899999764 6788888763
No 153
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=28.98 E-value=26 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKI 183 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~ 183 (280)
+||+|++.|..|-=...|++|++.+..
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~ 27 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD 27 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC
Confidence 479999988766666788888888743
No 154
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=28.78 E-value=61 Score=31.27 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 168 GGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 168 gGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
..+.+.|++|++.|++. +++|.+.
T Consensus 420 ~~~~~~a~~i~~~l~~i---GI~v~i~ 443 (590)
T 3drf_A 420 ANAETIAQNYIQQWKKI---GVKVSLY 443 (590)
T ss_dssp TTHHHHHHHHHHHHHHT---TCEEEEG
T ss_pred hHHHHHHHHHHHHHHHh---CcEEEEe
Confidence 47899999999999764 5666654
No 155
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=28.71 E-value=31 Score=31.13 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=53.5
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCch
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 234 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~ 234 (280)
.+|||||+-.+ +-|=.-.+-.+-++|++.+| ++++.++=. +...+ +++..|..+.++. .+.+..
T Consensus 7 ~~~~iLvi~~~-~lGD~i~~~P~l~~L~~~~P-~a~I~~l~~-~~~~~------------l~~~~p~vd~vi~-~~~~~~ 70 (349)
T 3tov_A 7 DYKRIVVTFLM-HLGDVILTTPFLEVLRKAAP-HSHITYVID-EKLQQ------------VMEYNPNIDELIV-VDKKGR 70 (349)
T ss_dssp TTCEEEEECCC-CHHHHHTTHHHHHHHHHHCT-TSEEEEEEE-GGGGG------------GTSSCTTCSEEEE-ECCSSH
T ss_pred CCCEEEEEecC-cccHHHHHHHHHHHHHHHCC-CCEEEEEEC-cchhH------------HHhcCCCccEEEE-eCcccc
Confidence 46889999876 88888888888888888885 556654321 11111 1222221111110 011111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCC-CEEEeCCcchhhH
Q 047228 235 HSCYLAAMAAYYAKEVEAGLMEYKP-DIIISVHPLMQHI 272 (280)
Q Consensus 235 ~s~l~~~l~~l~~rkL~~lIee~kP-DVIISTHPfpa~V 272 (280)
...+ ....++.+-|++.++ |+||..|...-..
T Consensus 71 ~~~~------~~~~~l~~~Lr~~~y~D~vidl~~~~rs~ 103 (349)
T 3tov_A 71 HNSI------SGLNEVAREINAKGKTDIVINLHPNERTS 103 (349)
T ss_dssp HHHH------HHHHHHHHHHHHHCCCCEEEECCCSHHHH
T ss_pred cccH------HHHHHHHHHHhhCCCCeEEEECCCChHHH
Confidence 1111 112356677888899 9999999876443
No 156
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=28.66 E-value=87 Score=26.50 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=31.1
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++.|.|.+.+-|.|=...|-+|+.+|.+. +..|-++|.-
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~---G~~VlliD~D 56 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQ---GKKVGILDAD 56 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 45566677788899999999999999765 4478888865
No 157
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=28.63 E-value=52 Score=30.49 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=32.1
Q ss_pred ccccccceEEEEEcCCCchHH---HHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 151 IGAERTKNVLILMSDTGGGHR---ASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 151 ~~~~~~kRVLILSAStGgGH~---qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.|.+..+||.+|....-+=|. ..|++|.++|++. +++|..+|+-
T Consensus 32 ~~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~---~~~v~~i~i~ 78 (383)
T 3k3p_A 32 RGSMSKETLVLLYGGRSAERDVSVLSAESVMRAINYD---NFLVKTYFIT 78 (383)
T ss_dssp -----CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT---TEEEEEEEEC
T ss_pred cccccCCeEEEEeCCCCCcchHHHHHHHHHHHHhhhc---CCEEEEEEec
Confidence 344445689999987777787 8999999999754 6788888865
No 158
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.58 E-value=55 Score=27.28 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=23.9
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++ +||+|+|+.-..+.-+++++++
T Consensus 178 ~~~~~~l~~-~~~ai~~~~d~~a~g~~~al~~ 208 (288)
T 2qu7_A 178 EATKTLLSK-GIKGIVATNHLLLLGALQAIKE 208 (288)
T ss_dssp HHHHHHHHT-TCCEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCEEEECCcHHHHHHHHHHHH
Confidence 456777777 9999999988777666777764
No 159
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=28.57 E-value=48 Score=29.37 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYA 201 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~is 201 (280)
..++.+++..|+|=...|+.|++.+... +..+.++|.-++..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~---~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE---GVKAVSIEGDAFHR 46 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH---TCCEEEEEGGGGBS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc---CCCeeEeecchhhc
Confidence 3588999999999999999999998754 23456677665553
No 160
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=28.41 E-value=71 Score=25.89 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|||.| |.+=|.|=...|-+|+.+|.+. +..|-++|.--
T Consensus 1 mkI~v-s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAV-AGKGGVGKTTVAAGLIKIMASD---YDKIYAVDGDP 38 (254)
T ss_dssp CEEEE-ECSSSHHHHHHHHHHHHHHTTT---CSCEEEEEECT
T ss_pred CEEEE-ecCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 46888 9999999999999999999765 35788888754
No 161
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=28.17 E-value=87 Score=24.26 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=27.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
++++|+..-|+|=...|++|++.+... +..+..+|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~---g~~~~~~~ 36 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ---GINNKIIN 36 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc---CceEEEEE
Confidence 578899999999999999999999754 33445555
No 162
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=28.02 E-value=81 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=25.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+-|++.+-...+.++|++|++.|++. +-.+++..+|.
T Consensus 412 l~l~~~~~~~~~~~~a~~iq~~l~~i-GI~v~i~~~~~ 448 (621)
T 2grv_A 412 IVLGVASNDPTSVAVANTAADQLRNV-GIDASVLALDP 448 (621)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHT-TCEEEEEEECH
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhc-CCEEEEEecCh
Confidence 55555554567899999999999875 33445555553
No 163
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=27.36 E-value=23 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred ceEEEEE---cCCCchHHHHHHHHHHHHh
Q 047228 157 KNVLILM---SDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 157 kRVLILS---AStGgGH~qAAeAIaEAL~ 182 (280)
|||+|-. ..+|.||..=.-||+++|.
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~ 29 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS 29 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 4688876 5599999999999999996
No 164
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=27.31 E-value=47 Score=29.84 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=28.9
Q ss_pred cceEEEEEcCCCchHH---HHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHR---ASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~---qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++||+||......=|. ..|+++.++|++. +++|..+|.-
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~---g~~v~~i~~~ 44 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKD---KYHVDIIYIT 44 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTT---TEEEEEEEEC
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhhc---CCEEEEEEEc
Confidence 4689999875555564 5678899999764 6788888754
No 165
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=27.01 E-value=75 Score=28.73 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=25.7
Q ss_pred ceEEEEEcCC-----CchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 157 KNVLILMSDT-----GGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 157 kRVLILSASt-----GgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
||||+++..+ .||=-..+..|.++|.++ +.+|.++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~---G~~V~vi 40 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIAD---GVDARVL 40 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHc---CCEEEEE
Confidence 5899999754 467677788899999776 3456554
No 166
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=26.97 E-value=40 Score=30.45 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
++|.|.++|.|+ ..++..|.++|.+.
T Consensus 41 ~~iwih~~s~G~--~~~~~~L~~~L~~~ 66 (374)
T 2xci_A 41 GALWVHTASIGE--FNTFLPILKELKRE 66 (374)
T ss_dssp TCEEEECSSHHH--HHHHHHHHHHHHHH
T ss_pred CCEEEEcCCHHH--HHHHHHHHHHHHhc
Confidence 569999999887 45888999999877
No 167
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=26.96 E-value=85 Score=28.33 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=27.3
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
...++|+|+ |+|. .++.+.+++.+. +++|.++|...
T Consensus 12 ~~~k~IlIl----G~G~--~g~~la~aa~~~---G~~vi~~d~~~ 47 (389)
T 3q2o_A 12 LPGKTIGII----GGGQ--LGRMMALAAKEM---GYKIAVLDPTK 47 (389)
T ss_dssp CTTSEEEEE----CCSH--HHHHHHHHHHHT---TCEEEEEESST
T ss_pred CCCCEEEEE----CCCH--HHHHHHHHHHHc---CCEEEEEeCCC
Confidence 455789997 7775 578888888765 67899998653
No 168
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=26.95 E-value=90 Score=26.96 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=31.0
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
..++++++.++.+=|.|=...|-.|+.+|.+. +..|-++|+--
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~ 79 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDP 79 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 33344555555888899999999999999875 44788888753
No 169
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=26.94 E-value=91 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=33.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+++.|.|.+.+=|.|=...|-+|+.+|.+. .+..|-++|+-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~--~g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE--PDIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS--TTCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC--cCCCEEEEECC
Confidence 456677888889999999999999999765 14578888974
No 170
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=26.93 E-value=1.3e+02 Score=23.05 Aligned_cols=41 Identities=15% Similarity=-0.015 Sum_probs=28.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|+||| +-+..|.|=-..++.++++++++. -++++.-.++-+
T Consensus 3 mkkIl-l~Cg~G~sTS~l~~k~~~~~~~~g-i~~~i~a~~~~~ 43 (106)
T 1e2b_A 3 KKHIY-LFSSAGMSTSLLVSKMRAQAEKYE-VPVIIEAFPETL 43 (106)
T ss_dssp CEEEE-EECSSSTTTHHHHHHHHHHHHHSC-CSEEEEEECSSS
T ss_pred CcEEE-EECCCchhHHHHHHHHHHHHHHCC-CCeEEEEecHHH
Confidence 56777 455556666689999999998763 345666555543
No 171
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=26.83 E-value=93 Score=27.08 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=30.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++.|+|.++.-|.|=...|-+|+.++.+. +..|-++|.-
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~---G~rVLLID~D 120 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQA---GYKTLIVDGD 120 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 45566666778899999999999999764 4478888874
No 172
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=26.75 E-value=65 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=27.4
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
++|+.++|.+.++|.|=..++-+|..+|.++
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~ 32 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQ 32 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHC
Confidence 3577788888999999999999999999876
No 173
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=26.28 E-value=76 Score=23.94 Aligned_cols=33 Identities=6% Similarity=0.193 Sum_probs=23.6
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
.|++|+|+ |+|. .+.++.+.|.+. +.+|.++|.
T Consensus 5 ~~~~v~I~----G~G~--iG~~la~~L~~~---g~~V~~id~ 37 (141)
T 3llv_A 5 GRYEYIVI----GSEA--AGVGLVRELTAA---GKKVLAVDK 37 (141)
T ss_dssp -CCSEEEE----CCSH--HHHHHHHHHHHT---TCCEEEEES
T ss_pred CCCEEEEE----CCCH--HHHHHHHHHHHC---CCeEEEEEC
Confidence 35678886 5665 678888888765 457888885
No 174
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=26.28 E-value=75 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=24.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
||||||+. +| +.++.+.+++.+. ++++..+|...
T Consensus 1 M~~Ililg----~g--~~g~~~~~a~~~~---G~~v~~~~~~~ 34 (380)
T 3ax6_A 1 MKKIGIIG----GG--QLGKMMTLEAKKM---GFYVIVLDPTP 34 (380)
T ss_dssp CCEEEEEC----CS--HHHHHHHHHHHHT---TCEEEEEESST
T ss_pred CCEEEEEC----CC--HHHHHHHHHHHHC---CCEEEEEeCCC
Confidence 57899985 44 4577777888665 56888888643
No 175
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=26.24 E-value=1.1e+02 Score=27.11 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=26.0
Q ss_pred CCCcCCCcceeeecccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 137 DNEEDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
.|.+.+.+.......+....+.-|-+-...++....+=+.+.+++++.+| +++|+++.+
T Consensus 9 ~g~~~Gt~~~~~~s~a~~~gk~~it~W~~~~~~~~~~~~~~i~~F~~~~p-~i~V~~~~~ 67 (433)
T 4gqo_A 9 SGVDLGTENLYFQSNADDNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENP-DVTIEVSQM 67 (433)
T ss_dssp --------------------CEEEEEEECSCHHHHHHHHHHHHHHHHHCT-TEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEeCCCchHHHHHHHHHHHHHHHCc-CeEEEEEEc
Confidence 44444443333333333333433444444555566667889999988874 788887654
No 176
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=26.24 E-value=38 Score=29.58 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.6
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||+.
T Consensus 51 ~~l~~~~~~~~Pd~Vihv 68 (215)
T 3lac_A 51 SVLKEYIEELAPEFIICI 68 (215)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHhhCCCeEEEe
Confidence 456677889999999984
No 177
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=26.09 E-value=38 Score=29.66 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=15.2
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||++
T Consensus 52 ~~l~~~i~~~~Pd~Vi~v 69 (215)
T 3giu_A 52 NIINKTLASNHYDVVLAI 69 (215)
T ss_dssp HHHHHHHHHSCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 466778889999999986
No 178
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=26.07 E-value=62 Score=30.21 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=23.6
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
+++++++++.+|+|=...|.+|++.+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 357899999999999999999998763
No 179
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=26.03 E-value=39 Score=29.85 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=14.8
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||+.
T Consensus 52 ~~l~~~i~~~~Pd~Vihv 69 (223)
T 3ro0_A 52 AVLREAMKKHQPDIIICV 69 (223)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 466777889999999984
No 180
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=25.92 E-value=64 Score=26.40 Aligned_cols=32 Identities=16% Similarity=-0.009 Sum_probs=24.4
Q ss_pred HHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. +||+|+|+.-..+.-+++++++
T Consensus 176 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 208 (276)
T 3ksm_A 176 SEMLRLLKETPTIDGLFTPNESTTIGALVAIRQ 208 (276)
T ss_dssp HHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceEEEECCchhhhHHHHHHHH
Confidence 4566677766 7899999988887777777764
No 181
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=25.88 E-value=54 Score=30.20 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhCCCEEEeC
Q 047228 245 YYAKEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIIST 265 (280)
....++.+++++++||+|+..
T Consensus 81 ~~~~~l~~~l~~~kPD~Vlv~ 101 (385)
T 4hwg_A 81 LVIEKVDEVLEKEKPDAVLFY 101 (385)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEE
Confidence 356789999999999999984
No 182
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.67 E-value=61 Score=26.92 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=26.0
Q ss_pred HHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++. +||+|+|+.-..+.-+++++++
T Consensus 180 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 213 (292)
T 3k4h_A 180 QQAVEELMGLQQPPTAIMATDDLIGLGVLSALSK 213 (292)
T ss_dssp HHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHH
Confidence 45667777765 8999999998888777887765
No 183
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=25.60 E-value=92 Score=28.27 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=30.2
Q ss_pred cceEEEEEcCCCchHHH---HHHHHHHHH-hhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGHRA---SAEAIRDAF-KIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH~q---AAeAIaEAL-~~~~p~~veV~IVD~Le 198 (280)
.+||+||.....+=|.- .|.++.++| ++. +++|..+|+-.
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~---g~~v~~i~~~~ 46 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATG---KYEIIVFAIAQ 46 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHS---SEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCccc---CcEEEEEEEcC
Confidence 46899998765555753 689999999 764 67899888653
No 184
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=25.49 E-value=44 Score=30.38 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=20.6
Q ss_pred cccceEEEEEcC-CCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 154 ERTKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 154 ~~~kRVLILSAS-tGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
.++||||+++.. +-.|....+.-+.+++.++ + +|.++
T Consensus 12 ~~~MkIl~is~~~~p~~~~~~~~~l~~~l~~~---G-~V~vi 49 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFRTPRRANIHFITDQLALR---G-TTRFF 49 (406)
T ss_dssp -CCSCEEEEESSCTTSSSCCHHHHHHHHHHHH---S-CEEEE
T ss_pred CCCceEEEEecccCCChhhhhHhHHHHHHHhC---C-ceEEE
Confidence 445789999976 3222222344566666655 3 56555
No 185
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.25 E-value=74 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHHhhh--CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY--KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~--kPDVIISTHPfpa~VlL~vLk~ 279 (280)
...+.+++++. +||+|+|+.-..+.-+++++++
T Consensus 175 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~ 209 (313)
T 3m9w_A 175 LKIMENALTANNNKIDAVVASNDATAGGAIQALSA 209 (313)
T ss_dssp HHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHH
Confidence 35677788875 8999999998888777787765
No 186
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=25.19 E-value=41 Score=29.83 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=14.6
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+.+++++||+||+.
T Consensus 73 ~~l~~~i~~~~Pd~Vihv 90 (228)
T 4hps_A 73 EHLYAAVDKYQPELVISV 90 (228)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHhhCCCEEEEe
Confidence 456677889999999985
No 187
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=25.16 E-value=79 Score=26.24 Aligned_cols=31 Identities=13% Similarity=-0.108 Sum_probs=23.1
Q ss_pred HHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. +||+|+|+.-. +.-++++++.
T Consensus 189 ~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~ 220 (304)
T 3gbv_A 189 RMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQ 220 (304)
T ss_dssp HHHHHHHHHCTTCCEEEESSSC-THHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHH
Confidence 4556666665 79999999998 6667777764
No 188
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=25.00 E-value=41 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.3
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||+.
T Consensus 47 ~~l~~~~~~~~pd~vi~~ 64 (192)
T 2ebj_A 47 GEALEDLHREGPKAVLHL 64 (192)
T ss_dssp HHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 467788899999999985
No 189
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=24.95 E-value=1.2e+02 Score=26.85 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=31.1
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+++.|+|.++.-|.|=...|-+|+.+|.+. +..|.++|.-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~---G~rVLLID~D 142 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQS---DQKVLFIDAD 142 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 345566666778899999999999999765 3478888864
No 190
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.94 E-value=61 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=24.4
Q ss_pred HHHHHHHhhh----CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY----KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~----kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. +||+|+|.....+.-+++++++
T Consensus 178 ~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~ 213 (295)
T 3hcw_A 178 NYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYE 213 (295)
T ss_dssp HHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHH
Confidence 4556666665 7999999998877777777765
No 191
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=24.82 E-value=42 Score=29.06 Aligned_cols=18 Identities=50% Similarity=0.630 Sum_probs=14.4
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||+.
T Consensus 50 ~~l~~~~~~~~pd~vi~v 67 (208)
T 1x10_A 50 EVLEKTLEEIKPDIAIHV 67 (208)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 456677888999999974
No 192
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=24.66 E-value=72 Score=27.50 Aligned_cols=31 Identities=13% Similarity=-0.113 Sum_probs=24.0
Q ss_pred HHHHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++ +||+|+|.-...+.-+++++++
T Consensus 230 ~~~~~ll~~-~~~ai~~~~d~~A~g~~~al~~ 260 (332)
T 2o20_A 230 ALAERLLER-GATSAVVSHDTVAVGLLSAMMD 260 (332)
T ss_dssp HHHHHHHHT-TCCEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCEEEECChHHHHHHHHHHHH
Confidence 456677777 9999999988877777777764
No 193
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=24.62 E-value=1.5e+02 Score=24.70 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred CCCcceeeecccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCC
Q 047228 141 DGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGW 203 (280)
Q Consensus 141 ~~~~~~~~~~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~ 203 (280)
+.|+-.++........++|||+.+.-|. ..|.+.|.+. +++|..+.+++...+.
T Consensus 105 ~~e~L~~~~~~~~~~g~~vL~~rg~~~r------~~l~~~L~~~---G~~v~~~~~Y~~~~~~ 158 (240)
T 3mw8_A 105 ATEGLLTLPSLEQVSGKQIVIVRGKGGR------EAMADGLRLR---GANVSYLEVYQRACPP 158 (240)
T ss_dssp CGGGGGGCGGGTCCTTCEEEEEEESSSC------CHHHHHHHHT---TCEEEEEEEEEEECCC
T ss_pred CHHHHHHhhhhccCCCCEEEEEeCCCcH------HHHHHHHHHC---CCEEEEEEEEEeeCCC
Confidence 4444444433223456799999987664 5688888765 5789889998877664
No 194
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=24.41 E-value=61 Score=25.26 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=26.8
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+|+.||+|..=.|++...-|+++++.+.+.. .+++|...|+
T Consensus 1 MmptIl~lHGf~ss~~s~k~~~l~~~~~~~~-~~~~v~~pdl 41 (202)
T 4fle_A 1 MMSTLLYIHGFNSSPSSAKATTFKSWLQQHH-PHIEMQIPQL 41 (202)
T ss_dssp --CEEEEECCTTCCTTCHHHHHHHHHHHHHC-TTSEEECCCC
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHcC-CCcEEEEeCC
Confidence 4677888887555544444788899887764 4667766664
No 195
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.26 E-value=71 Score=27.78 Aligned_cols=100 Identities=10% Similarity=-0.057 Sum_probs=54.6
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 047228 165 DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAA 244 (280)
Q Consensus 165 StGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~PLY~~~Y~~T~~~~~~s~l~~~l~~ 244 (280)
.++.-+.++++.+.+.|.+.. .. ++-.+..-. .......-.++|...++...+- +.... ..+.. .
T Consensus 153 ~V~~D~~~~~~~a~~~L~~~G-~~-~I~~i~~~~--~~~~~~~R~~Gf~~al~~~g~~-~~~~~--~~~~~--------~ 217 (333)
T 3jvd_A 153 RVLCDDEAGFFQLTESVLGGS-GM-NIAALVGEE--SLSTTQERMRGISHAASIYGAE-VTFHF--GHYSV--------E 217 (333)
T ss_dssp EEEECHHHHHHHHHHHHCCSS-SC-EEEEEESCT--TSHHHHHHHHHHHHHHHHTTCE-EEEEE--CCSSH--------H
T ss_pred EEEEChHHHHHHHHHHHHHCC-CC-eEEEEeCCC--CCccHHHHHHHHHHHHHHCCCC-EEEec--CCCCH--------H
Confidence 356667888888888887662 22 443333211 1111223355566555544211 00000 11110 1
Q ss_pred HHHHHHHHHHhhhCCCEEEeCCcchhhHHHHhhhh
Q 047228 245 YYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 245 l~~rkL~~lIee~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
-..+.+.+++++..||+|+|..-..+.-+++++++
T Consensus 218 ~~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~ 252 (333)
T 3jvd_A 218 SGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTR 252 (333)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHH
Confidence 13356677887777999999998888777777764
No 196
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=24.23 E-value=98 Score=29.73 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.2
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
+++++++++.+|+|=...|.+|++.+.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCC
Confidence 357899999999999999999999884
No 197
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=23.98 E-value=1e+02 Score=27.87 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=35.0
Q ss_pred cccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 152 GAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 152 ~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+..+++.|.|.+..=|-|=...|-+|+.+|.+. +..|-++|+-
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~---g~rVlliD~D 181 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM---GKKVFYLNIE 181 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH---TCCEEEEECC
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhC---CCCEEEEECC
Confidence 345667778888899999999999999999876 3478888975
No 198
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=23.98 E-value=45 Score=28.89 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.7
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||+.
T Consensus 47 ~~l~~~~~~~~Pd~vi~v 64 (206)
T 1iu8_A 47 EKLLKVLDDVRPDITINL 64 (206)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 466777888999999984
No 199
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=23.89 E-value=74 Score=29.30 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=33.4
Q ss_pred ccceEEEEEcCCCchHH---HHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 155 RTKNVLILMSDTGGGHR---ASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~---qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
.++||.+|....-+=|. ..|+++.++|++. +++|..+|+-.
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~---~~~v~~i~i~~ 64 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQ---RFEPVLIGIDK 64 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT---TEEEEEEEECT
T ss_pred CCceEEEEeccCCCCchhHHHHHHHHHHHhCcc---CCEEEEEEECC
Confidence 46789999988888887 8899999999754 67888888653
No 200
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=23.79 E-value=92 Score=29.12 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=27.0
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEE
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVK 194 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IV 194 (280)
.++||++. --|.||....-.|++.|.++ +.+|.++
T Consensus 8 ~~~vl~~p-~p~~GHi~P~l~La~~L~~r---G~~VT~v 42 (482)
T 2pq6_A 8 KPHVVMIP-YPVQGHINPLFKLAKLLHLR---GFHITFV 42 (482)
T ss_dssp CCEEEEEC-CSSHHHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred CCEEEEec-CccchhHHHHHHHHHHHHhC---CCeEEEE
Confidence 45788776 56899999999999999876 3455554
No 201
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=23.62 E-value=52 Score=25.91 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
+.+++|+...|+|=...|++|++.+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34678999999999999999999873
No 202
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=23.61 E-value=1.1e+02 Score=28.16 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=28.5
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
|+++++|+..+|+|=...|.+|++.+. .++.-.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~------~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP------CELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC------EEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC------CcEEeccch
Confidence 567899999999999999999998763 345555544
No 203
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=23.60 E-value=60 Score=27.44 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=31.8
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcC--CCeEEEEEecccccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFG--DEYRIFVKDVCKEYA 201 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p--~~veV~IVD~Le~is 201 (280)
.+.++.|+...|+|=...|+.|++.+...+- .+.++.++|.-+++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3458889999999999999999998854210 012345566655554
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=23.56 E-value=75 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHH
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDA 180 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEA 180 (280)
+++++|+...|+|=...|++|++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999999998
No 205
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=23.33 E-value=1.1e+02 Score=24.30 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
.++++|+...|+|=...|+.|++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3588899999999999999999999754
No 206
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=23.14 E-value=67 Score=29.55 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=27.7
Q ss_pred ccccccceEEEEEcCCC-----chHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 151 IGAERTKNVLILMSDTG-----GGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 151 ~~~~~~kRVLILSAStG-----gGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
....++|||++++..+. ||... ...++++|.++ +.+|.++-
T Consensus 41 ~~~~~~mrI~~v~~~~~p~~~~GG~~~-v~~la~~L~~~---GheV~Vvt 86 (413)
T 2x0d_A 41 TSSIKGKRLNLLVPSINQEHMFGGIST-ALKLFEQFDNK---KFKKRIIL 86 (413)
T ss_dssp ECCCCSCEEEEEESCCCGGGCSHHHHH-HHHHHTTSCTT---TCEEEEEE
T ss_pred cCCCCCceEEEEeCCCCccccccHHHH-HHHHHHHHHHc---CCceEEEE
Confidence 33446678999997753 67764 56888888765 44666554
No 207
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.94 E-value=80 Score=27.34 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=25.2
Q ss_pred HHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++. +||+|+|..-..+.-+++++++
T Consensus 235 ~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~ 268 (344)
T 3kjx_A 235 REMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLE 268 (344)
T ss_dssp HHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHH
Confidence 34567777765 8999999998877777777764
No 208
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=22.93 E-value=67 Score=26.90 Aligned_cols=33 Identities=12% Similarity=-0.035 Sum_probs=25.8
Q ss_pred HHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++. +||+|+|+.-..+..+++++++
T Consensus 176 ~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~ 209 (288)
T 3gv0_A 176 RDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEA 209 (288)
T ss_dssp HHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 35667777764 7999999998888777888765
No 209
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=22.90 E-value=1.3e+02 Score=26.48 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=31.9
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++.|+|.++.-|.|=...|-+|+.++.+. +..|.++|.-
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~---G~rVLLID~D 130 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQT---NKRVLLIDCD 130 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhC---CCCEEEEecc
Confidence 45677777888999999999999999765 3478888874
No 210
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=22.75 E-value=91 Score=28.64 Aligned_cols=42 Identities=5% Similarity=0.101 Sum_probs=34.5
Q ss_pred ccccceEEEEEcCCCchHHHHHHHHHHHHh--hhcCCCeEEEEEecc
Q 047228 153 AERTKNVLILMSDTGGGHRASAEAIRDAFK--IEFGDEYRIFVKDVC 197 (280)
Q Consensus 153 ~~~~kRVLILSAStGgGH~qAAeAIaEAL~--~~~p~~veV~IVD~L 197 (280)
....++|+|++..=|-|=...|-+++.++. .. +..|.++|.-
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~---g~~vllid~D 57 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP---NEQFLLISTD 57 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT---TSCEEEEECC
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC---CCeEEEEECC
Confidence 455678999999999999999999999997 43 4478888874
No 211
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.61 E-value=80 Score=26.11 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhC---CCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEYK---PDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~k---PDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++.. ||+|+|+.-..+.-+++++++
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~ 222 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLRE 222 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 456777777764 899999998888777887765
No 212
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=22.50 E-value=91 Score=24.76 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=0.0
Q ss_pred ceEEEEEcCCC--chHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCch
Q 047228 157 KNVLILMSDTG--GGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL 205 (280)
Q Consensus 157 kRVLILSAStG--gGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~ 205 (280)
|||||+++|.- |--.+.|+++.+.+.. +++|+-++--|...
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~--------~~i~l~~~~lp~~~ 43 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT--------DLIDLSEFVLPVFN 43 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC--------EEEETTTSCCCCCC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc--------eEEeeecCCCCCCC
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.35 E-value=1.5e+02 Score=23.16 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
..+++|+...|+|-...|++|++.+... ++.+..+|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~---g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH---GIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC---CCcEEEEC
Confidence 3578899999999999999999998542 33444445
No 214
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=22.33 E-value=50 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=14.7
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+.+++++||+||++
T Consensus 52 ~~l~~~i~~~~Pd~vi~~ 69 (216)
T 4gxh_A 52 EHLYAAVDKYQPELVISV 69 (216)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHhhCCCEEEEe
Confidence 456778889999999985
No 215
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.27 E-value=76 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 047228 158 NVLILMSDTGGGHRASAEAIRDAF 181 (280)
Q Consensus 158 RVLILSAStGgGH~qAAeAIaEAL 181 (280)
++++|+...|+|=...|++|++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 488999999999999999999886
No 216
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=22.00 E-value=99 Score=28.72 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=25.3
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++++|||+ |+| +.++.+.+++.+. +++|.++|..
T Consensus 34 ~~~~IlIl----G~G--~lg~~~~~aa~~l---G~~v~v~d~~ 67 (419)
T 4e4t_A 34 PGAWLGMV----GGG--QLGRMFCFAAQSM---GYRVAVLDPD 67 (419)
T ss_dssp TTCEEEEE----CCS--HHHHHHHHHHHHT---TCEEEEECSC
T ss_pred CCCEEEEE----CCC--HHHHHHHHHHHHC---CCEEEEECCC
Confidence 44689997 777 5677888888765 6788888843
No 217
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=21.99 E-value=92 Score=26.84 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
+.|.|.+.+-|.|=...|-+|+.+|.+. +..|-++|.-
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D 42 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYG---GAKVAVIDLD 42 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC
Confidence 3556666788999999999999999765 4578888874
No 218
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=21.96 E-value=89 Score=28.67 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~ 196 (280)
+|+||||+ |+| ..|..+.+++.+. ++++..+|.
T Consensus 1 m~k~ilI~----g~g--~~~~~~~~a~~~~---G~~vv~v~~ 33 (449)
T 2w70_A 1 MLDKIVIA----NRG--EIALRILRACKEL---GIKTVAVHS 33 (449)
T ss_dssp CCSEEEEC----CCH--HHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCceEEEe----CCc--HHHHHHHHHHHHc---CCeEEEEec
Confidence 36789987 456 3566677777665 568887764
No 219
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=21.95 E-value=1e+02 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=33.9
Q ss_pred cccceEEEEEcCCCchHHHHHHHHHHHHh--hhcCCCeEEEEEecc
Q 047228 154 ERTKNVLILMSDTGGGHRASAEAIRDAFK--IEFGDEYRIFVKDVC 197 (280)
Q Consensus 154 ~~~kRVLILSAStGgGH~qAAeAIaEAL~--~~~p~~veV~IVD~L 197 (280)
...++|+|.|++-|-|=...|-+|+-++. +. +.+|-++|.-
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~---G~rVLLvD~D 57 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP---NKQFLLISTD 57 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT---TSCEEEEECC
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC---CCeEEEEECC
Confidence 45578999999999999999999999997 54 4478888875
No 220
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.87 E-value=91 Score=25.83 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=25.9
Q ss_pred HHHHHHHHhhh----CCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLMEY----KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee~----kPDVIISTHPfpa~VlL~vLk~ 279 (280)
...+.+++++. +||+|+|+.-..+.-++++++.
T Consensus 176 ~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~ 212 (291)
T 3l49_A 176 YSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQA 212 (291)
T ss_dssp HHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHH
Confidence 45677788776 6999999988887777877764
No 221
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=21.71 E-value=1.3e+02 Score=26.32 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=41.5
Q ss_pred cCCCcceeeecccccccceEEEEEcC-CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 140 EDGESTVELMQIGAERTKNVLILMSD-TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 140 ~~~~~~~~~~~~~~~~~kRVLILSAS-tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
|++-..-++...|.++.-+|++++.+ ...+-..|.++|++.+.......+++..+|..+
T Consensus 18 d~~~~vral~~~g~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~vd~~d 77 (244)
T 2wte_A 18 NETFLLRLLNETSAQKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEIEITD 77 (244)
T ss_dssp CCHHHHHHHHHTTCCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEECCCS
T ss_pred ChHHHHHHHHHhCCCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEECCcc
Confidence 33333445567788888888888865 568899999999999987621256776677543
No 222
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.71 E-value=84 Score=26.45 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=25.5
Q ss_pred HHHHHHHHhh-hCCCEEEeCCcchhhHHHHhhhh
Q 047228 247 AKEVEAGLME-YKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 247 ~rkL~~lIee-~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.+.+.+++++ .+||+|+|+.-..+.-+++++++
T Consensus 175 ~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~ 208 (294)
T 3qk7_A 175 YLAASRLLALEVPPTAIITDCNMLGDGVASALDK 208 (294)
T ss_dssp HHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHH
Confidence 3466777776 58999999998888777887765
No 223
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.70 E-value=72 Score=26.51 Aligned_cols=102 Identities=5% Similarity=-0.136 Sum_probs=52.1
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH-HHHHHHHhcCCCchhhHHHHHHH
Q 047228 165 DTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ-LWKVAFHSTSPKWIHSCYLAAMA 243 (280)
Q Consensus 165 StGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P-LY~~~Y~~T~~~~~~s~l~~~l~ 243 (280)
.++.-+.++++.+.+.|.+.. .. ++-.+..-. .......-.++|...++... -+...+-... .+. .
T Consensus 106 ~V~~D~~~~~~~a~~~L~~~G-~~-~i~~i~~~~--~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~-~~~--------~ 172 (289)
T 3g85_A 106 SVNVDNYKMGEKASLLFAKKR-YK-SAAAILTES--LNDAMDNRNKGFIETCHKNGIKISENHIIAA-ENS--------I 172 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTT-CC-BCEEEECCC--SSHHHHHHHHHHHHHHHHTTCBCCGGGEEEC-CSS--------H
T ss_pred EEEeCHHHHHHHHHHHHHHcC-CC-EEEEEeCCc--ccccHHHHHHHHHHHHHHcCCCCChhheecc-CCC--------H
Confidence 456677888888888887663 22 333332211 11111222345555444431 0000000000 000 0
Q ss_pred HHHHHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 244 AYYAKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 244 ~l~~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
.-..+.+.+++++. +||+|+|+.-..+.-+++++++
T Consensus 173 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 209 (289)
T 3g85_A 173 HGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNK 209 (289)
T ss_dssp HHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHH
Confidence 11234567777764 7999999998888777887765
No 224
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=21.60 E-value=53 Score=28.81 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.4
Q ss_pred HHHHHHHhhhCCCEEEeC
Q 047228 248 KEVEAGLMEYKPDIIISV 265 (280)
Q Consensus 248 rkL~~lIee~kPDVIIST 265 (280)
+.+.+++++++||+||+.
T Consensus 51 ~~l~~~i~~~~Pd~Vi~v 68 (220)
T 1a2z_A 51 IELKRYLEEIKPEIVINL 68 (220)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 456677888999999984
No 225
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=21.58 E-value=90 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=32.1
Q ss_pred cceEEEEEcCCCchHH---HHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 156 TKNVLILMSDTGGGHR---ASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 156 ~kRVLILSAStGgGH~---qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
++||.+|....-+=|. ..|+++.++|++. +++|..+|+-
T Consensus 3 ~~~v~vl~GG~S~E~evSl~S~~~v~~al~~~---~~~v~~i~i~ 44 (364)
T 3i12_A 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKT---RFDVVLLGID 44 (364)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT---TEEEEEEEEC
T ss_pred ccEEEEEeccCCCCccchHHHHHHHHHHHhhc---CCeEEEEEEC
Confidence 4689999988777787 8999999999764 6788888864
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.52 E-value=71 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=44.3
Q ss_pred cccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCch---hhHHHHHHHHHhHHH
Q 047228 150 QIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL---NDMERSYKFMVKHVQ 220 (280)
Q Consensus 150 ~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~---~li~~~Yl~~Vr~~P 220 (280)
..|.+.++-| +|+..=|.|=...|+||+.++.. ....++.-+..+.++. +.++..+...-+..|
T Consensus 176 ~~gi~~prGv-LL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 176 SLGIAQPKGV-ILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HHTCCCCCCE-EEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCS
T ss_pred hCCCCCCCce-EEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHHhhccccchHHHHHHHHHHHHHHhCC
Confidence 3466666655 59999999999999999999854 3455676666666653 455566655555555
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=21.28 E-value=71 Score=29.83 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFK 182 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~ 182 (280)
+++++|+..+|+|=...|.+|++.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36999999999999999999998763
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.11 E-value=85 Score=30.12 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=44.4
Q ss_pred cccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCch---hhHHHHHHHHHhHHH
Q 047228 150 QIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL---NDMERSYKFMVKHVQ 220 (280)
Q Consensus 150 ~~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~---~li~~~Yl~~Vr~~P 220 (280)
..|.+.++ =++|+..-|.|=...|+||+.++.. .+..++.-+..+.+.. +.+...+...-+..|
T Consensus 209 ~~g~~~pr-GvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 209 DMGIRAPK-GALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp HHCCCCCC-EEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCC-eeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC
Confidence 34555555 4558999999999999999999854 3455676666666554 455666665555556
No 229
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=21.06 E-value=1.4e+02 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+++|+...|+|=...|+.|++.+... ++.+...|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~---g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK---GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 67899999999999999999999654 33444444
No 230
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=21.04 E-value=1.6e+02 Score=23.36 Aligned_cols=29 Identities=7% Similarity=0.176 Sum_probs=25.4
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
+.++++|+...|+|=...|++|++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 34688999999999999999999999754
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.88 E-value=71 Score=31.28 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=43.0
Q ss_pred ccccccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCch---hhHHHHHHHHHhHHH
Q 047228 151 IGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL---NDMERSYKFMVKHVQ 220 (280)
Q Consensus 151 ~~~~~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~---~li~~~Yl~~Vr~~P 220 (280)
.|.+.++ =++|+..-|.|=...|+||+.++.. ....++.-+..+.++. +.++..+...-...|
T Consensus 238 ~Gi~ppr-GILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 238 LGIDPPK-GILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSELVQKYVGEGARMVRELFEMARTKKA 303 (467)
T ss_dssp HTCCCCS-EEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCC-ceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 4555555 4559999999999999999999854 3455676666666654 344555555444445
No 232
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=20.88 E-value=59 Score=30.81 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 047228 159 VLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKD 195 (280)
Q Consensus 159 VLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD 195 (280)
+-|++.+-...+.++|++|++.|++. +-.++++.+|
T Consensus 354 l~l~~~~~~~~~~~~a~~iq~~l~~i-GI~v~i~~~~ 389 (529)
T 1zu0_A 354 LLIQSPNGWTDFNNTVQLAVEQLQEV-GIKAKARTPE 389 (529)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHc-CCeEEEEecC
Confidence 44443332356889999999999874 3344444343
No 233
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=20.85 E-value=89 Score=26.26 Aligned_cols=103 Identities=9% Similarity=-0.110 Sum_probs=52.0
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCeEEEEEeccccccCCchhhHHHHHHHHHhHHH-HHH--HHHHhcCCCch-hhHHHHH
Q 047228 166 TGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQ-LWK--VAFHSTSPKWI-HSCYLAA 241 (280)
Q Consensus 166 tGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~isP~l~~li~~~Yl~~Vr~~P-LY~--~~Y~~T~~~~~-~s~l~~~ 241 (280)
++.-+.++++...+.|.+.. .. ++-.+..-... .....-.++|...++... -+. +.+......+. ....
T Consensus 111 V~~D~~~~g~~a~~~L~~~G-~~-~I~~i~~~~~~--~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~--- 183 (301)
T 3miz_A 111 IEPDDYQGARDLTRYLLERG-HR-RIGYIRLNPIL--LGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNY--- 183 (301)
T ss_dssp EEECHHHHHHHHHHHHHTTT-CC-SEEEEECCTTS--HHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEEC---
T ss_pred EeeChHHHHHHHHHHHHHcC-CC-eEEEEecCccc--hhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccH---
Confidence 45568888888888887662 22 44333321111 112233455665555441 010 01111000000 0000
Q ss_pred HHHHHHHHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 242 MAAYYAKEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 242 l~~l~~rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
..+.+.+++++. +||+|+|+.-..+.-+++++++
T Consensus 184 ----~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~ 218 (301)
T 3miz_A 184 ----VFAAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMA 218 (301)
T ss_dssp ----HHHHHHHHHTSTTCCSEEEESSHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHH
Confidence 014556667654 8999999998888777887765
No 234
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=20.77 E-value=1.9e+02 Score=27.09 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=30.7
Q ss_pred cceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecccc
Q 047228 156 TKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKE 199 (280)
Q Consensus 156 ~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~Le~ 199 (280)
..++.+++++|+.|. .||++|++.+.+. +-.+++..++.+..
T Consensus 92 d~~v~Ll~SDT~~G~-l~AeiLke~l~~~-G~~v~~~~V~gL~~ 133 (324)
T 3qyf_A 92 EIYVFLYSTNTSNSQ-LAGEVIRDYLIEE-GIRSELVTVKTISS 133 (324)
T ss_dssp GEEEEEEEESSHHHH-HHHHHHHHHHHHT-TCEEEEEEECCCCS
T ss_pred CcEEEEEecCCHHHH-HHHHHHHHHHHHc-CCeeEEEEcCCCCc
Confidence 456889999999997 5789999999775 23455555665544
No 235
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=20.71 E-value=1.4e+02 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
+.+++|++--|+|=...|++|++.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~ 31 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN 31 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 4588899999999999999999998754
No 236
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.66 E-value=1e+02 Score=25.62 Aligned_cols=32 Identities=16% Similarity=-0.090 Sum_probs=22.8
Q ss_pred HHHHHHHhhh-CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY-KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~-kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. +||+|+|.--..+..+++++++
T Consensus 180 ~~~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~ 212 (290)
T 2fn9_A 180 KVTEQILQAHPEIKAIWCGNDAMALGAMKACEA 212 (290)
T ss_dssp HHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCchHHHHHHHHHHH
Confidence 4556666654 6899999887777666777664
No 237
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.34 E-value=1e+02 Score=25.98 Aligned_cols=32 Identities=9% Similarity=-0.071 Sum_probs=23.6
Q ss_pred HHHHHHHhhh----CCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLMEY----KPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee~----kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++. +||+|+|+--..+.-+++++++
T Consensus 177 ~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~ 212 (306)
T 2vk2_A 177 EVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKE 212 (306)
T ss_dssp HHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHH
Confidence 4566777764 7999999988776667777764
No 238
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=20.26 E-value=94 Score=26.62 Aligned_cols=40 Identities=8% Similarity=0.176 Sum_probs=28.9
Q ss_pred cceEEEEEcCCCchH---HHHHHHHHHHHhhhcCCCeEEEEEeccc
Q 047228 156 TKNVLILMSDTGGGH---RASAEAIRDAFKIEFGDEYRIFVKDVCK 198 (280)
Q Consensus 156 ~kRVLILSAStGgGH---~qAAeAIaEAL~~~~p~~veV~IVD~Le 198 (280)
.|||+||+...-.=| ...|++|.++|++. +++|..+|.-+
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~---g~~v~~i~~~~ 45 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKN---KYEIVPITLNE 45 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTT---TEEEEEEECSS
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHC---CCEEEEEcccC
Confidence 468999985433223 46799999999765 67888888753
No 239
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=20.23 E-value=99 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.005 Sum_probs=24.3
Q ss_pred HHHHHHHhh-hCCCEEEeCCcchhhHHHHhhhh
Q 047228 248 KEVEAGLME-YKPDIIISVHPLMQHIPLWVLKW 279 (280)
Q Consensus 248 rkL~~lIee-~kPDVIISTHPfpa~VlL~vLk~ 279 (280)
+.+.+++++ -+||+|+|+.-..+..+++++++
T Consensus 165 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 197 (280)
T 3gyb_A 165 TETLALLKEHPEVTAIFSSNDITAIGALGAARE 197 (280)
T ss_dssp HHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEECChHHHHHHHHHHHH
Confidence 455666666 47999999998888777877764
No 240
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.15 E-value=1e+02 Score=21.97 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=14.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhh
Q 047228 157 KNVLILMSDTGGGHRASAEAIRDAFKIE 184 (280)
Q Consensus 157 kRVLILSAStGgGH~qAAeAIaEAL~~~ 184 (280)
+||||+-. +...++.+++.|...
T Consensus 3 ~~ilivdd-----~~~~~~~l~~~L~~~ 25 (120)
T 3f6p_A 3 KKILVVDD-----EKPIADILEFNLRKE 25 (120)
T ss_dssp CEEEEECS-----CHHHHHHHHHHHHHT
T ss_pred CeEEEEEC-----CHHHHHHHHHHHHhC
Confidence 46777754 345666777777543
No 241
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=20.04 E-value=1.3e+02 Score=28.99 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=33.4
Q ss_pred ccceEEEEEcCCCchHHHHHHHHHHHHhhhcCCCeEEEEEecc
Q 047228 155 RTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVC 197 (280)
Q Consensus 155 ~~kRVLILSAStGgGH~qAAeAIaEAL~~~~p~~veV~IVD~L 197 (280)
.+++++|++..-|-|=...|-+++.++.+. +..|-++|.-
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQ---GKRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHC---CCcEEEEECC
Confidence 467899999999999999999999999765 3467777765
Done!