BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047229
(599 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=MCH1 PE=3 SV=1
Length = 486
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 322 GDDYALLQAIFSIDMLILFTATTCSIGGALAAI-DNMGQIGKALGYPTHSIASF---ISL 377
G + A L+ F+ LF IGG +NMG I + SF +SL
Sbjct: 259 GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEMFQNNMGAILDTVTVENADSPSFSTHVSL 318
Query: 378 ISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV----HNSLYFA 433
+ ++ + R+V GF+SE + V RP+LL+++ L + +L++ + N+ YF+
Sbjct: 319 FATFSTVSRLVVGFSSEAM--ESHVSRPVLLSVIALVAACIHLMVPSGIFTVFDNAKYFS 376
Query: 434 --SIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDRE 491
+I+ GF G+ +L+ TI+++++G+ + T++ ++ +GS + + A ++YD
Sbjct: 377 VVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFA-KVYD-A 434
Query: 492 ALKQGKGGLN--CIGARCYRVAFV 513
A + G G ++ C G CY + FV
Sbjct: 435 ASEVGVGSMSQVCSGVHCYGLTFV 458
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1
Length = 489
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 195/460 (42%), Gaps = 97/460 (21%)
Query: 42 GSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGV-LAGLTYEVAPPWIVLLSGSI 100
GS +FAL++ ++ L Y Q +N++ F +G L + + G + P VLLS
Sbjct: 43 GSVLLFALFTPVLQHQLHYTQFQINIIGSFTSIGMYLPLPVLGYLADCHGP--VLLSVIS 100
Query: 101 MNFF--GFFMIWLSVSHRFGAKPHVWQMCL-YMLIGANSQSFPNTGALVTCVKNFPESRG 157
+ FF G+ + V + + W + + + LIG + + T AL+TC K +P+S+G
Sbjct: 101 VLFFSPGYTLAATVVQNDWS----FWYLAISFGLIGCATSALYFT-ALLTCAKIYPKSKG 155
Query: 158 VVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIVFIPTIRIIKIARPE 217
+ I GLS I ++ +L L+CL +
Sbjct: 156 LTISAPVTCYGLSSLIGSR-------------VLKLSCL------------------QKN 184
Query: 218 NELKVFH-----SFLYILLVLAGFIMVTII-IQNKLRFTRSEYIATALVVVVLSLFIPLA 271
+L ++ SFLY L L ++ +++ I+ + + E PL
Sbjct: 185 GDLDLYRCFKLFSFLYFFLGLFDWVSASVVSIERDVLLRKHEDGENT----------PLL 234
Query: 272 AVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAI 331
QE + D +P N K+ FL +K++S Y LL
Sbjct: 235 TDPNQE------------HENNDDLVP--NHKSKFLKF--IKDIST-------YVLL--- 268
Query: 332 FSIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGF 391
FS+ + SIG + I NMG + KA+ P I+ +++ ++++ L R+ G
Sbjct: 269 FSLLL---------SIGPSEMYITNMGSLVKAIT-PNSLISDQVAIHAVFSTLSRLSLGA 318
Query: 392 ASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA--VHNSLYFASIIIGFCLGAQLSLLV 449
S+ + Y++ R LL +I+ + IA + V + Y S + GF G +L
Sbjct: 319 LSDFLVTNYQISRSWLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGGLFTLYP 378
Query: 450 TIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD 489
T+I ++G + + + + ++ IGS F + V G +YD
Sbjct: 379 TVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGM-VFGLVYD 417
>sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1
PE=3 SV=1
Length = 598
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 43/229 (18%)
Query: 347 IGGALAAIDNMGQIGKALGYPTH--------SIASFISLISIWNFLGRIVAGFASEIFLA 398
IG A I+N+G + K L YP H S A+ +S++ I + L R++ G +++ LA
Sbjct: 368 IGPGEAFINNLGTVIKTL-YPPHLKFVGEPTSAATHVSIVGITSTLVRLLTGSLTDL-LA 425
Query: 399 KYKVPRPLLLTLV-------ILFSCIGYLLIAFAV----------------HNSLYF-AS 434
R + +T S + +LL FAV H ++ AS
Sbjct: 426 PSPQARHVQITSSGTLERKRFSLSRVSFLLF-FAVTLSVGLATLASGWIQNHGERFWVAS 484
Query: 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD---RE 491
++G GA SL II+ ++G+++++T + + ++ +G+ + + V +Y +
Sbjct: 485 GLVGAGYGAVFSLTPIIITVIWGVENFATNWGIVAMFPALGATFWGL-VYSAVYQSGVEK 543
Query: 492 ALKQGKGGLN---CIGARCYRVAFVTISAATFFACIVSIILVLRTKNFY 537
A G+GG C G+ CY AF ++A+ + AC + ++ + KN +
Sbjct: 544 AASNGQGGEEDQFCYGSECYASAFWAMAASVWVACGL-VLWAWKGKNGW 591
>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1
SV=1
Length = 547
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 42 GSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSI 100
G+ Y+F+ Y+ + S + + +SF +G +L G+LAG+ + +P L+ GS+
Sbjct: 33 GTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGILAGIVVDRSPKLSCLI-GSM 91
Query: 101 MNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVK-NFPESRGVV 159
F + ++ L H + + + + L +LIG S S A V C NFP+ RG
Sbjct: 92 CVFIAYLILNLCYKHEWSST-FLISLSL-VLIGYGSVS--GFYASVKCANTNFPQHRGTA 147
Query: 160 IGLLKGLIGLSGAIMTQIYHAVNGDNTKA--LILLLAC 195
L GLSG + + + + G+N + + L++AC
Sbjct: 148 GAFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVAC 185
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 375 ISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVIL------------FSCI-GYLL 421
++L+S+ +F GR+ +G S+ + K+K R + + L FS I L
Sbjct: 368 VTLLSLLSFCGRLSSGPISDFLVKKFKAQRLWNIVIASLLVFLASNKISHDFSSIEDPSL 427
Query: 422 IAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNV 481
A ++ S I G+ G +I+++ FG YSTL+ V + +F+V
Sbjct: 428 RASKSFKNISVCSAIFGYSFGVLFGTFPSIVADRFGTNGYSTLWGVLTTGG-----VFSV 482
Query: 482 RVAGRLYDRE-ALKQGKGGLNC-IGARCYRVAF-VTISAATF 520
V + R+ G NC G CY F VT A F
Sbjct: 483 SVFTDILGRDFKANTGDDDGNCKKGVLCYSYTFMVTKYCAAF 524
>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
GN=yhjX PE=1 SV=1
Length = 402
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 20/170 (11%)
Query: 323 DDYALLQAIFSID--MLILFTATTCSIGGALAAIDNMGQIGKALGY-PTHSIASFISLIS 379
DY L +++ ML + T C G L I I ++L + S A+ +++IS
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSG--LYVIGVAKDIAQSLAHLDVVSAANAVTVIS 260
Query: 380 IWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVHNSL-YFASI-II 437
I N GR+V G S+ K+ R ++T+ + S +G + FA N++ +FA+I +
Sbjct: 261 IANLSGRLVLGILSD------KIARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACV 314
Query: 438 GFCLGAQLSLLVTIISELFGL----KHYSTLY---NVGSVSSPIGSYIFN 480
F G +++ +++SE FGL K+Y +Y +GS+ I + +F
Sbjct: 315 AFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASLFG 364
>sp|Q08777|MCH5_YEAST Riboflavin transporter MCH5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MCH5 PE=1 SV=2
Length = 521
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 352 AAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLV 411
+A+ G + G + + I +I++ GR V G+ S+ F ++ V LLTL
Sbjct: 348 SALTYYGSYATSHGISANDAYTLIMIINVCGIPGRWVPGYLSDKF-GRFNVAIATLLTLF 406
Query: 412 ILFSCIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTII-----SELFGLKHYSTLYN 466
I+ +G+L + N +Y S + GFC G+ SLL +E FG K YST+Y
Sbjct: 407 IVM-FVGWLPFGTNLTN-MYVISALYGFCSGSVFSLLPVCCGQISKTEEFG-KRYSTMYF 463
Query: 467 VGSVSSPIG 475
V + +G
Sbjct: 464 VVGFGTLVG 472
>sp|Q4WVT3|MCH1_ASPFU Probable transporter mch1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mch1 PE=3
SV=1
Length = 619
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490
+ + +IG G+ SL+ IIS ++G++++ T + + ++ G+ ++ V + R Y +
Sbjct: 510 HVTTALIGLGYGSAFSLVPIIISVVWGVENFGTNWGIVAMVPAAGAAMWGV-IYSRGY-Q 567
Query: 491 EALKQGKGGLN--CIGARCYRVAFVTISAATFFACIVSIILVLR 532
+A G G + C G RCY V + + + A +V+ IL R
Sbjct: 568 DATDGGNGSPDGQCHGWRCYGFWAVGCTLSVWVA-VVAWILAWR 610
>sp|Q59MJ2|MCH1_CANAL Probable transporter MCH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=MCH1 PE=3 SV=1
Length = 436
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 31 FFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGN--LGVLAGLTYEV 88
F +LL V GS +F LY++ LG +N++S LG L VL L
Sbjct: 30 FLISLLSCLVAGSILLFTLYTSSFHEVLGLSYLQINMISSLSALGMYFCLPVLGYLADSY 89
Query: 89 APPWIVLLSGSIMNFF--GFFMIWLSVSHRFGAKPHVWQMCL-YMLIGANSQSFPNTGAL 145
P + L S + FF +F+ VS + G+ V C+ + IG + S +L
Sbjct: 90 GPALLSLFS---IWFFCPSYFVNSYLVSTQSGS---VIGFCVCFCFIGLATSSL-YFSSL 142
Query: 146 VTCVKNFPESRGVVIGLLKGLIGLSGAIMTQI 177
+TC + P+ +G+ I L GLS + QI
Sbjct: 143 ITCARICPDHKGLAISLPITCYGLSALLGAQI 174
>sp|Q6CPY8|MCH1_KLULA Probable transporter MCH1 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=MCH1 PE=3 SV=1
Length = 479
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 39/246 (15%)
Query: 46 MFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNLGVLAGLTYEVAPPWIVLLSGS------ 99
M ++Y+ + LGY +NL+ GNLG + PP + +LS S
Sbjct: 47 MISVYAVPWELRLGYSSLDVNLLY----AAGNLGA------YLTPPLLGILSDSHGPVIL 96
Query: 100 -IMNFFGFF--MIWLSVSHRFGAKP-HVWQMCLYMLIGANSQSFPNTGALVTCVKNFPES 155
++F GF ++LS + G+ P + + ++G + S AL+TC K +P++
Sbjct: 97 SWLSFIGFVPSYLYLSCVFQLGSDPCFALSVVAFAIVGIATSSL-YFCALITCAKLYPDT 155
Query: 156 RGVVIGLLKGLIGLSGAIMTQI-----YHAVNGDNTKALILLLACLPTIVPIVFI----- 205
+ + I GLS I Q+ +H+ D L ++ VF+
Sbjct: 156 KLLSISFPTTCFGLSSVIGLQVIKLPWFHS-KEDGYLDLAVVFKSFAVFYTFVFLLTWIS 214
Query: 206 -PTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTR------SEYIATA 258
TI IIK+ ++ S +VL + + NK F + +YIA A
Sbjct: 215 TSTISIIKLRGSQSPSASHASARADAIVLEDETTLLLASGNKGEFYKRIRNFFQDYIAYA 274
Query: 259 LVVVVL 264
++V+L
Sbjct: 275 FLIVML 280
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 386 RIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAVH----NSLYFASIIIGFCL 441
R+++G ++F K+ PR L+ L++L + + ++I A++ + + AS I GF
Sbjct: 321 RLLSGLFIDLF-TKWNWPRIPLIILMLLSAILAQVIIIHAMNVVNISYIAIASAISGFTY 379
Query: 442 GAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYD---REALKQGKG 498
G ++ + L+G + + T Y + GS F V A +++D + +
Sbjct: 380 GGLFTIFPALTLNLWGDEVFGTAYGTFMLGPAFGSSFFGVMYA-QVHDSNCKSVIPAATA 438
Query: 499 GLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKN 535
C AF + A A ++II +++K
Sbjct: 439 DPVTSSPNCIVPAFTASTIALVVALTITIIATVKSKR 475
>sp|Q752I1|MCH1_ASHGO Probable transporter MCH1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MCH1 PE=3 SV=1
Length = 450
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 12 NWREVKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLNLVSFF 71
NW GF + L F L G +LYS + LGY +N++
Sbjct: 16 NWLHGSGFAWNTLHMS--AFLVALCACIPAGFISQISLYSEPWREHLGYSVVEVNVLFSA 73
Query: 72 KDLGGNLGVLAGLTYEVAPPWIVLLS---GSIM----NFFGFFMIWLSVSHRFGA-KPHV 123
+LGG + PP + LLS G +M +F GF + + F + +PH
Sbjct: 74 VNLGG----------YITPPLLGLLSDAHGPVMLSWLSFVGFVPTYAYAAWVFASGEPHF 123
Query: 124 WQMCL-YMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQI 177
+ L + LIG ++ + AL T K +P S+ I L G++ + +Q+
Sbjct: 124 YASVLCFTLIGISTNAL-YFSALFTASKLYPASKLCSISLPATFYGMASVLGSQL 177
>sp|Q07376|MCH1_YEAST Probable transporter MCH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MCH1 PE=1 SV=1
Length = 486
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 24/211 (11%)
Query: 314 NVSKKP--ERGDDYALLQAIFSIDMLILFT---------ATTCSIGGALAAIDNMGQIGK 362
+V + P ER + +Q F+ ML +F+ + S+G I NMG +
Sbjct: 251 DVEQSPLLERSNH---VQEKFTQTMLRIFSDPVTYILAVSILLSLGPLEMFIANMGSLTN 307
Query: 363 ---ALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419
L PT S +S ++ + R++ G ++ F K + +LLT + L C
Sbjct: 308 LLVQLDAPTLS-TKLLSTYALSSTFTRLLTGIVADFFAKKKISIKWILLTFLSLGVCAQL 366
Query: 420 LLIAFAVHNS---LYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGS 476
L+ S L ++G G ++ T++ ++G + + T+Y ++ IGS
Sbjct: 367 FLLKMTSSASPWGLVPTGSLVGIVYGGLFTVYPTLVLLVWGERSFGTVYGSLLIAPAIGS 426
Query: 477 YIFNVRVAGRLYDREALKQGKGGLN--CIGA 505
IF + A + YD + G N CI A
Sbjct: 427 MIFCMLYA-KFYDSRCMSGGGDLRNPSCISA 456
>sp|Q51330|OXLT_OXAFO Oxalate:formate antiporter OS=Oxalobacter formigenes GN=oxlT PE=1
SV=3
Length = 418
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 23 LLDSRWF-MFFATLLIMSVNGSSYMFALYSNDIKSSLG 59
LL +RWF + A LL+ ++G Y + LY+N +K +LG
Sbjct: 12 LLGNRWFYLVLAVLLMCMISGVQYSWTLYANPVKDNLG 49
>sp|Q6BN11|MCH1_DEBHA Probable transporter MCH1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MCH1 PE=3 SV=2
Length = 486
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 8/177 (4%)
Query: 7 NCIGANWREVKGFGLHLLDSRWFMFFATLLIMSVNGSSYMFALYSNDIKSSLGYDQTTLN 66
N I + + F + + + + FF +L +GS +F+L+S+ + G + +N
Sbjct: 9 NRISHSIKHYLSFHVSIANLKKISFFISLFSCLTSGSIMLFSLFSSSLHELYGINYLHIN 68
Query: 67 LVSFFKDLGGNL--GVLAGLTYEVAPPWIVLLS--GSIMNFFGFFMIWLSVSHRFGAKPH 122
++ +G L VL L P + L+S + ++F + S+ + K H
Sbjct: 69 FIASLSAIGMYLCLPVLGYLADCYGPSLLSLISIWFFVPSYFVNSQVIKSLEYNNVMKIH 128
Query: 123 VWQ--MCLYMLIGANSQSFPNTGALVTCVKNFPESRGVVIGLLKGLIGLSGAIMTQI 177
++ +C + + A S + +L+TC K +PE +G+ I L GLS + +Q+
Sbjct: 129 LYAFGICFFFIGLATSSLY--FSSLLTCAKIYPEHKGLAISLPVTCYGLSTLLGSQL 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,529,429
Number of Sequences: 539616
Number of extensions: 8334489
Number of successful extensions: 24723
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 24690
Number of HSP's gapped (non-prelim): 83
length of query: 599
length of database: 191,569,459
effective HSP length: 123
effective length of query: 476
effective length of database: 125,196,691
effective search space: 59593624916
effective search space used: 59593624916
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)