Query 047229
Match_columns 599
No_of_seqs 290 out of 2506
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.5E-33 8.6E-38 293.0 27.3 402 23-532 22-436 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.4E-32 4.9E-37 286.2 31.5 392 25-519 22-422 (438)
3 4gc0_A D-xylose-proton symport 100.0 5.3E-31 1.8E-35 278.6 25.6 433 28-546 11-479 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.9E-27 1.3E-31 248.9 28.5 410 49-533 35-475 (491)
5 2gfp_A EMRD, multidrug resista 100.0 8.6E-28 2.9E-32 244.7 16.6 328 44-490 16-352 (375)
6 2cfq_A Lactose permease; trans 99.9 7.8E-25 2.7E-29 225.9 18.0 362 49-531 29-401 (417)
7 2xut_A Proton/peptide symporte 99.9 3.2E-23 1.1E-27 220.8 26.2 140 48-195 33-185 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 7.8E-13 2.7E-17 137.4 14.8 178 333-533 27-210 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.4 3.4E-12 1.1E-16 134.2 18.3 175 335-531 14-198 (491)
10 3o7q_A L-fucose-proton symport 99.4 7.9E-12 2.7E-16 129.2 15.9 143 339-488 31-177 (438)
11 2gfp_A EMRD, multidrug resista 99.3 9.9E-12 3.4E-16 125.7 10.9 163 340-524 6-169 (375)
12 2xut_A Proton/peptide symporte 99.2 6.1E-11 2.1E-15 125.7 14.3 172 334-527 12-196 (524)
13 4gc0_A D-xylose-proton symport 98.9 1.3E-09 4.5E-14 114.3 8.3 111 370-487 56-185 (491)
14 2cfq_A Lactose permease; trans 98.9 4E-10 1.4E-14 115.6 3.7 166 329-519 2-177 (417)
15 2g9p_A Antimicrobial peptide l 49.2 5.9 0.0002 20.4 0.8 14 81-94 2-15 (26)
16 2zz9_A Aquaporin-4; water tran 36.4 17 0.00056 34.2 2.4 11 508-518 207-217 (301)
17 2knc_B Integrin beta-3; transm 21.1 89 0.0031 22.4 3.4 19 509-527 12-30 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.5e-33 Score=292.99 Aligned_cols=402 Identities=12% Similarity=0.078 Sum_probs=280.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHH
Q 047229 23 LLDSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSI 100 (599)
Q Consensus 23 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~ 100 (599)
.++++|..+....+..+..+. .+.++.+.|.+.+++ .+.++.+++.+.+.++..+ +++.|++.||+|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 344566665555555555544 566788889999999 9999999987777777765 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHH
Q 047229 101 MNFFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYH 179 (599)
Q Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~ 179 (599)
+..++.+++++.... . ++++.++++|+++|++.+...+....++.|++| ++|++++++...+.++|..+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~-~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-T---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHCHHH-H---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhhc-c---ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998777551000 1 678899999999999999999999999999998 56999999999999999999988876
Q ss_pred HhcCCCh-HHH-HHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 180 AVNGDNT-KAL-ILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 180 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
.+.+... |++ +++.++...+..++..+.+
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~------------------------------------------------- 207 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMM------------------------------------------------- 207 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhc-------------------------------------------------
Confidence 6543111 111 1111111111111111111
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML 337 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (599)
++.+++...++ .++.+ +++ +. + .+++++++...++...++.++++.+|
T Consensus 208 -----------------~~~~~~~~~~~-----------~~~~~-~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 208 -----------------RDTPQSCGLPP-----------IEEYK-NDY-PD-D-YNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp -----------------CCSSTTTCCCS-----------CTTTC-CC----------------CCTHHHHHHTSSCHHHH
T ss_pred -----------------cCCHhhcCCCC-----------hhhhc-ccc-cc-c-chhhhhcccccccchHHHHHcCHHHH
Confidence 11111000000 00000 000 00 0 00000111111222257788999999
Q ss_pred HHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhh--hhhccCCchHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIF--LAKYKVPRPLLLTLVILF 414 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~--g~r~~~~~~~~~~~~~~~ 414 (599)
.+.+..++.......+..+++.++++ .|+++.+++...+...++..+++++.|++.||+ ++|+ .+..+..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~~~~~~~~ 329 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG------ATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------hHHHHHHH
Confidence 98888888777777788888988888 699999999999999999999999999999998 7664 33444333
Q ss_pred HH-HHHHHHHHh---hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchh-hhhHhhhhHHHHHHh
Q 047229 415 SC-IGYLLIAFA---VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPI-GSYIFNVRVAGRLYD 489 (599)
Q Consensus 415 ~~-~~~~~~~~~---~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~i-g~~i~~~~l~g~~~~ 489 (599)
.. ++.+++... +.....+..++.|++.+...+....+..|.+|++++|++.|+.+....+ |.. ++|.+.|.+.|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~-~~~~~~g~l~~ 408 (451)
T 1pw4_A 330 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV-AASAIVGYTVD 408 (451)
T ss_dssp HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33 444444332 2334556667778888888888889999999999999999999999998 876 89999999999
Q ss_pred hhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047229 490 REALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLR 532 (599)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 532 (599)
. .+|+..|++.+++.+++.++.+++.++
T Consensus 409 ~---------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 409 F---------------FGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp S---------------SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---------------cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7 348889999888888877776665443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.4e-32 Score=286.17 Aligned_cols=392 Identities=11% Similarity=0.061 Sum_probs=269.3
Q ss_pred hhhHHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHH
Q 047229 25 DSRWFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMN 102 (599)
Q Consensus 25 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~ 102 (599)
+++|..+....+..+..+. .+.++.+.|.+.+++|++.++.+++.+.+.++..+ +++.|++.||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3444444444444455555 56778889999999999999999988888887765 899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHh
Q 047229 103 FFGFFMIWLSVSHRFGAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAV 181 (599)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~ 181 (599)
.++.++++.. ... ++++.++++|+++|+|.+...+....++.+++| ++|++++++...+.++|..+++.+...+
T Consensus 102 ~~~~~~~~~~--~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 102 ALGAALFWPA--AEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHH--HHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhc--ccc---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997766332 222 789999999999999999999999999999997 6799999999999999999998887776
Q ss_pred c-CCChH--HHHHHHHHHHHHHHHHhhhccccccccCCcchhhh-HHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHH
Q 047229 182 N-GDNTK--ALILLLACLPTIVPIVFIPTIRIIKIARPENELKV-FHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIAT 257 (599)
Q Consensus 182 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (599)
. ..... ... ....+++...+++.. ...|.......+....+..
T Consensus 177 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---------------- 223 (438)
T 3o7q_A 177 ILSNVPHQSQDV-----------------LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA---------------- 223 (438)
T ss_dssp HHTSSCCCCHHH-----------------HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred Hhcccccccccc-----------------cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH----------------
Confidence 5 32110 000 000000000000000 0001111000110000000
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHH
Q 047229 258 ALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDML 337 (599)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (599)
+ . ....+.+ +++++. +++++++....++++++++|.+|
T Consensus 224 -----~-----~--~~~~~~p-------------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 224 -----L-----L--IMLTKFP-------------------ALQSDN-----------HSDAKQGSFSASLSRLARIRHWR 261 (438)
T ss_dssp -----H-----H--HHHCCCC-------------------CCTTTC-----------CCCSSTTSHHHHHHHHTTCSHHH
T ss_pred -----H-----H--HHHHcCC-------------------cccccc-----------cccccccchhhhHHHHHhChHHH
Confidence 0 0 0000000 000000 00011112234568899999999
Q ss_pred HHHHHHHhhhcchhhhhcchHHH-HHHc-CCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHH
Q 047229 338 ILFTATTCSIGGALAAIDNMGQI-GKAL-GYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFS 415 (599)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 415 (599)
...+..++.......+..+++.+ .++. |+++.+++...++..++..+++++.|++.||+++|+ .+..+.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~ 335 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK------VLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHH
Confidence 98888888777777778888988 8776 999999999999999999999999999999998875 556666666
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhc
Q 047229 416 CIGYLLIAFAVHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQ 495 (599)
Q Consensus 416 ~~~~~~~~~~~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~ 495 (599)
.++.+++...+.....+..++.|++.+..++....+..|.+|++ ++.+.++.. ...+++. ++|.+.|.+.|..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~-~~~~~~g~l~~~~g--- 409 (438)
T 3o7q_A 336 MALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG-IVTPVMGFVSDAAG--- 409 (438)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH-HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH-HHHHHHHHHHHHhc---
Confidence 66665555554444455667889999999999999999999865 888888777 5567765 89999999999842
Q ss_pred CCCCccccCcchHHHHHHHHHHHH
Q 047229 496 GKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 496 ~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
+++..|++.+++.
T Consensus 410 -----------~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 410 -----------NIPTAELIPALCF 422 (438)
T ss_dssp -----------SSGGGGHHHHHHH
T ss_pred -----------chHHHHHHHHHHH
Confidence 2666777654443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.98 E-value=5.3e-31 Score=278.57 Aligned_cols=433 Identities=11% Similarity=0.041 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHhhHHHHHhHhCC--------CHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHH
Q 047229 28 WFMFFATLLIMSVNGS-SYMFALYSNDIKSSLGY--------DQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLS 97 (599)
Q Consensus 28 w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~i 97 (599)
|.+.+.+.+..+..|. ....+...|.+.++++. +.++.+++.+.+.+|..+ ++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3343333333333443 33345567788777632 345677888888888876 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccC----------CCChhHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHh
Q 047229 98 GSIMNFFGFFMIWLSVSHRF----------GAKPHVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGL 166 (599)
Q Consensus 98 g~~~~~~g~~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~ 166 (599)
+.+++.++.++++++..... ..++|+++++++|+++|+|.|...+....++.|+.| ++|++..++...+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 99999999876643211000 013789999999999999999999999999999998 5699999999999
Q ss_pred hhhhHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHHHHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHH
Q 047229 167 IGLSGAIMTQIYHAVNG--------DNTKALILLLACLPTIVPIVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIM 238 (599)
Q Consensus 167 ~~lg~~i~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (599)
..+|.+++..+...... ..+|++.+....++.++.++..+.+++.|+ +..
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~---------~L~------------- 228 (491)
T 4gc0_A 171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPR---------WLM------------- 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHH---------HHH-------------
T ss_pred hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChH---------HHH-------------
Confidence 88888887777665532 133455555566666655555555543332 110
Q ss_pred HHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCC
Q 047229 239 VTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKK 318 (599)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (599)
.+.+.++. ++.+.+....+..+++ .. +..+... .++
T Consensus 229 -----------------------------------~~~~~~~a----~~~l~~~~~~~~~~~~-~~--~~~~~~~-~~~- 264 (491)
T 4gc0_A 229 -----------------------------------SRGKQEQA----EGILRKIMGNTLATQA-VQ--EIKHSLD-HGR- 264 (491)
T ss_dssp -----------------------------------HTTCHHHH----HHHHHHHHHHHHHHHH-HH--HHHHHHH-HHH-
T ss_pred -----------------------------------HcCchhHH----HHhHHHhcCCchhHHH-HH--HHHHHHH-hhh-
Confidence 00000000 0000000000000000 00 0000000 000
Q ss_pred CCCCCChhHHHhhcchhHHHHH-HHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhh
Q 047229 319 PERGDDYALLQAIFSIDMLILF-TATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFL 397 (599)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g 397 (599)
+.......++.+...... ...+........+..+.+.+.+..+.+.........+.++...++.++++++.||+|
T Consensus 265 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~G 340 (491)
T 4gc0_A 265 ----KTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFG 340 (491)
T ss_dssp ----HHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----hhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000112233333333333 333333344444555666777777887777777778888999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHh---h-hh-hHHHHHHHHHHHhh-hHHHHHHHHHHHhhCCCcccchhhhhhcc
Q 047229 398 AKYKVPRPLLLTLVILFSCIGYLLIAFA---V-HN-SLYFASIIIGFCLG-AQLSLLVTIISELFGLKHYSTLYNVGSVS 471 (599)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~i~~~l~g~~~g-~~~~~~~~~~~e~~~~~~~g~~~g~~~~~ 471 (599)
||+ .+..+...+.++.+.+... . .. ...+..++...+.+ ...+..+.+.+|.+|++.|+++.|+.+..
T Consensus 341 rr~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 341 RKP------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp SHH------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred Ccc------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 885 4444444444444333221 1 11 12222222222222 23466778999999999999999999988
Q ss_pred chhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 047229 472 SPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVLRTKNFYQGDIYNKFK 546 (599)
Q Consensus 472 ~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 546 (599)
+.+++. +++.+.+.+.+...... ..++...|++.+++++++.+..+++.+|+|+++.||+++.++
T Consensus 415 ~~~~~~-i~~~~~p~l~~~~~~~~---------~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 415 QWLANY-FVSWTFPMMDKNSWLVA---------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHH-HHHTHHHHHCHHHHHHH---------HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 888876 66666666554321100 012456788888889999999999999999988877665544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3.9e-27 Score=248.90 Aligned_cols=410 Identities=12% Similarity=0.065 Sum_probs=247.6
Q ss_pred hhHHHHHhH-----hCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcc-cCChHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Q 047229 49 LYSNDIKSS-----LGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEV-APPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKP 121 (599)
Q Consensus 49 ~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~ 121 (599)
.+.+.+.++ +|.+.++.+++.+.+.++..+ +++.|+++|| +|||+++.++.++..++.+++++ . +
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~---~ 106 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----P---F 106 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----C---C
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----h---h
Confidence 344445555 999999999987777777765 8999999999 89999999999999888765532 2 6
Q ss_pred hHHHHHHHHHHHhccccccchhHHHHHhhcCC-CC--ccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047229 122 HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ES--RGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPT 198 (599)
Q Consensus 122 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~--rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (599)
+++.++++|+++|+|.+...+....++.|++| ++ |+.+.++...+.++|..+++.+.+.+.+...|++.+....+..
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 186 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM 186 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 78899999999999999999999999999997 56 6778888889999999999999888776444555444443333
Q ss_pred HHHHHhhhcc-ccc-ccc--CC-----cchh-hhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhc
Q 047229 199 IVPIVFIPTI-RII-KIA--RP-----ENEL-KVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFI 268 (599)
Q Consensus 199 ~~~~~~~~~i-~~~-~~~--~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (599)
++..+..... +.. +++ ++ ..+. ...+..+......++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~------------------------------ 236 (491)
T 4aps_A 187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIV------------------------------ 236 (491)
T ss_dssp HHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHH------------------------------
T ss_pred HHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 3333322222 111 110 00 0000 111100000000000000
Q ss_pred chhhhhhhhhhhhhchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhc
Q 047229 269 PLAAVIKQELNIWKGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIG 348 (599)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (599)
....... ...++......... .... ........+++.. .. .+..+....+.+.+..++...
T Consensus 237 ----~~~~~~~-~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 297 (491)
T 4aps_A 237 ----VMNLVGW-NSLPAYINLLTIVA---------IAIP-VFYFAWMISSVKV-TS---TEHLRVVSYIPLFIAAVLFWA 297 (491)
T ss_dssp ----HHHHHSS-CCTTHHHHHHHHHH---------HHHH-HHHHHHHC----------------CTTHHHHHHHHHHHHH
T ss_pred ----HHHhccC-cccccchhhhhHHH---------HHHH-HHHHHHHhhcccc-cH---HHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000000000 0000 0000000000000 00 011122223334433333333
Q ss_pred chhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHh--
Q 047229 349 GALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFA-- 425 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (599)
........++.+.++ .+.+....+.......+...++.++.|++.||++||+. .+...+..+..+.+++.+++...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777776 47776788888899999999999999999999998753 22233445555555555443331
Q ss_pred --------hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCC
Q 047229 426 --------VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGK 497 (599)
Q Consensus 426 --------~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~ 497 (599)
+.....+..++.|++.+...+....++.|.+|++.+|++.|+.++...+|.. ++|.+.+.+.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~~~~~~~~~~------- 448 (491)
T 4aps_A 377 LYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNAQLVTLYNAK------- 448 (491)
T ss_dssp HCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHHHHGGGGGGS-------
T ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc-------
Confidence 2334556677888998888888899999999999999999999999999976 888888877654
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 498 GGLNCIGARCYRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 498 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
++...|.+.+++++++.++.+++.++.
T Consensus 449 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 449 ---------SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp ---------STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677877777777777666554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=8.6e-28 Score=244.65 Aligned_cols=328 Identities=13% Similarity=0.018 Sum_probs=240.6
Q ss_pred HHHHHhhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChh
Q 047229 44 SYMFALYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPH 122 (599)
Q Consensus 44 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~ 122 (599)
...+....|.+.+++|.++++.+++.+...++... +++.|++.||+|||+++.++.++..++.++...+ ++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------SS 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------cc
Confidence 45567778899999999999999987777777755 8999999999999999999999999998776554 78
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 047229 123 VWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVP 201 (599)
Q Consensus 123 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (599)
++.+++.|+++|++.+...+....++.|++| ++|++++++...+.++|..+++.+.+.+.+...|++.+.......++.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 679999999999999999999888887665323332222211111111
Q ss_pred HHhhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 047229 202 IVFIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIW 281 (599)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (599)
.+ ......++.
T Consensus 168 ~~-----------------------------------------------------------------~~~~~~~~~---- 178 (375)
T 2gfp_A 168 TF-----------------------------------------------------------------SMARWMPET---- 178 (375)
T ss_dssp HC-----------------------------------------------------------------CCCCSSCCC----
T ss_pred HH-----------------------------------------------------------------HHHHHCccc----
Confidence 10 000000000
Q ss_pred hchhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHH
Q 047229 282 KGNKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIG 361 (599)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+++ + +++ ++...++++.+|+|+++...+..++.......+..+.|.+.
T Consensus 179 ---------------~~~---~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T 2gfp_A 179 ---------------RPV---D-----------APR---TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLM 226 (375)
T ss_dssp ---------------STT---T-----------CCC---CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSS
T ss_pred ---------------CCC---C-----------ccc---ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 01112346788899999888877777666666777777777
Q ss_pred HH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHH-HHHHHH--HHHH---hhhhhHHHHH
Q 047229 362 KA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILF-SCIGYL--LIAF---AVHNSLYFAS 434 (599)
Q Consensus 362 ~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~i~~ 434 (599)
++ .|.++.+.+...+...++..+++++.+++.||.+++. ..+... ...+.. .... .+.....+..
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 76 6888888999999999999999999999999987531 122211 222211 1111 1233345667
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhh
Q 047229 435 IIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDR 490 (599)
Q Consensus 435 ~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~ 490 (599)
++.|++.+...+....+..|.+| +++|++.|+.+....+|.. ++|.+.|.+.+.
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~ 352 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 78889999888889999999998 8999999999999999976 889999998876
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=7.8e-25 Score=225.91 Aligned_cols=362 Identities=12% Similarity=0.034 Sum_probs=219.2
Q ss_pred hhHHHHHhHhCCCHHHHHHHHHHHHhHhhh-hhhhhhhhcccCChHHHHHHHHHHHHHHHHHHHHHhccCCCChhH-HHH
Q 047229 49 LYSNDIKSSLGYDQTTLNLVSFFKDLGGNL-GVLAGLTYEVAPPWIVLLSGSIMNFFGFFMIWLSVSHRFGAKPHV-WQM 126 (599)
Q Consensus 49 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~~~~~-~~l 126 (599)
.+...+++++|+++.+.+++.+...++..+ +++.|+++||+|||++++++.+++.++...+.. .... +.. ..+
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~--~~~~---~~~~~~~ 103 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI--FIFG---PLLQYNI 103 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH--HTHH---HHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHH
Confidence 333446778999999999977776676655 999999999999999999988776543211110 0000 111 123
Q ss_pred HHHHHHHhccccccchhHHHHHhhcCC---CCccchhHHHHHhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 047229 127 CLYMLIGANSQSFPNTGALVTCVKNFP---ESRGVVIGLLKGLIGLSGAIMTQIYHAVNGDNTKALILLLACLPTIVPIV 203 (599)
Q Consensus 127 ~~~r~l~G~g~g~~~~~~~~~~~~~fp---~~rg~~~g~~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (599)
+..+++.|++.+..++.......++.+ ++|+...|....+..+|..+++.+.+.+.+.++ ++.++....+.++.++
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~-~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN-QFVFWLGSGCALILAV 182 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCS-HHHHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHH
Confidence 456677777777665555555555553 346778888877778888888877766543111 1111111111000000
Q ss_pred hhhccccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHhhcchhhhhhhhhhhhhc
Q 047229 204 FIPTIRIIKIARPENELKVFHSFLYILLVLAGFIMVTIIIQNKLRFTRSEYIATALVVVVLSLFIPLAAVIKQELNIWKG 283 (599)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (599)
..+ ..++ +.
T Consensus 183 ~~~-------------------------------------------------------------------~~~~-~~--- 191 (417)
T 2cfq_A 183 LLF-------------------------------------------------------------------FAKT-DA--- 191 (417)
T ss_dssp HSC-------------------------------------------------------------------SSCC-CC---
T ss_pred HHH-------------------------------------------------------------------HcCc-cc---
Confidence 000 0000 00
Q ss_pred hhhhhhhhhhccCCCCccccccccchhhhcccCCCCCCCCChhHHHhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH
Q 047229 284 NKLQALDAHYDQAIPALNVKTNFLTLFSLKNVSKKPERGDDYALLQAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++..+++++ .++++++....+.++++++|++|...+..++.......+..++|.++.+
T Consensus 192 -------------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 192 -------------PSSATVANA---------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp -------------SCSSCSSSS---------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccccccccc---------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0000011112245678899998877665444333333344456766655
Q ss_pred c-C---CCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 047229 364 L-G---YPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAFAV-HNSLYFASIIIG 438 (599)
Q Consensus 364 ~-g---~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g 438 (599)
. + .+....+...++..++..++.++.|+++||+++|+ .+..+..+.+++.+++...+ ...+.+..++.+
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (417)
T 2cfq_A 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHM 323 (417)
T ss_dssp TSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHH
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3 2 12333456667777888999999999999998875 45555555555554443332 333444555567
Q ss_pred HHhhhHHHHHHHHHHHhhCCCcccchhhhh-hccchhhhhHhhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHH
Q 047229 439 FCLGAQLSLLVTIISELFGLKHYSTLYNVG-SVSSPIGSYIFNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISA 517 (599)
Q Consensus 439 ~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~-~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 517 (599)
++.+...+....+++|.+|++.+|+++|+. +....+|+. ++|.+.|.+.|. .++...|.+.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~gp~l~G~l~~~---------------~g~~~~f~~~~~ 387 (417)
T 2cfq_A 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVLAGNMYES---------------IGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HHTHHHHTHHHH---------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-HhhhhHHHHHHh---------------cCcHHHHHHHHH
Confidence 777766677788999999999999999995 777888876 899999999987 348888888888
Q ss_pred HHHHHHHHHHHHHh
Q 047229 518 ATFFACIVSIILVL 531 (599)
Q Consensus 518 ~~~i~~i~~~~~~~ 531 (599)
+++++.++.+++.+
T Consensus 388 ~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 388 VALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhhhc
Confidence 87777766554433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=3.2e-23 Score=220.79 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=112.6
Q ss_pred HhhHHHHHhHhC------CCHHHHHHHHHHHHhHhhh-hhhhhhhhccc-CChHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047229 48 ALYSNDIKSSLG------YDQTTLNLVSFFKDLGGNL-GVLAGLTYEVA-PPWIVLLSGSIMNFFGFFMIWLSVSHRFGA 119 (599)
Q Consensus 48 ~~~~~~l~~~~~------~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~ig~~~~~~g~~~~~~~~~~~~~~ 119 (599)
+.+.+.+.+++| ++..+.+++.+.+.++..+ .++.|+++||+ |||+++.++.++..++.++++++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------- 105 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF------- 105 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence 344455778899 9999999987777777755 88999999999 99999999999998887765433
Q ss_pred Ch-hHHHHHHHHHHHhccccccchhHHHHHhhcCC-CCccchhHH---HHHhhhhhHHHHHHHHHHhcCCChHHHHHHHH
Q 047229 120 KP-HVWQMCLYMLIGANSQSFPNTGALVTCVKNFP-ESRGVVIGL---LKGLIGLSGAIMTQIYHAVNGDNTKALILLLA 194 (599)
Q Consensus 120 ~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g~---~~~~~~lg~~i~~~i~~~~~~~~~~~~~~~~~ 194 (599)
+ +++.+++.|+++|++.+...+....++.+++| ++|+++.+. ...+.++|..+++.+.+.+.+...|++.+...
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5 78899999999999999999999999999997 568877666 88888899999988877766544444444433
Q ss_pred H
Q 047229 195 C 195 (599)
Q Consensus 195 ~ 195 (599)
.
T Consensus 185 ~ 185 (524)
T 2xut_A 185 G 185 (524)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=7.8e-13 Score=137.37 Aligned_cols=178 Identities=11% Similarity=0.056 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHH
Q 047229 333 SIDMLILFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVI 412 (599)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~ 412 (599)
.+.++...+..++.......+...++.+.+++ .++.+.+++.+...++..++.++.|+++||+|||+ .+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHHH
Confidence 34444555555554444444555677777778 99999999999999999999999999999999885 667777
Q ss_pred HHHHHHHHHHHH----h-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 413 LFSCIGYLLIAF----A-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 413 ~~~~~~~~~~~~----~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
++.+++.++... . +...+++..++.|++.+...+...+++.|.+|+++|+.+.|+......+|.. ++|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 777777766655 3 3455677788899999999999999999999999999999999999999976 899999888
Q ss_pred HhhhhhhcCCCCccccCcch-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047229 488 YDREALKQGKGGLNCIGARC-YRVAFVTISAATFFACIVSIILVLRT 533 (599)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~i~~i~~~~~~~~~ 533 (599)
.+. .+ |+..|++.+++.++..++..+..++.
T Consensus 179 ~~~---------------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 179 MAW---------------FNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHH---------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHH---------------hccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 776 34 88889988887777666655554443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=3.4e-12 Score=134.24 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhhhcchhhhhcchHHHHHH------cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhh-hhhhccCCchHH
Q 047229 335 DMLILFTATTCSIGGALAAIDNMGQIGKA------LGYPTHSIASFISLISIWNFLGRIVAGFASEI-FLAKYKVPRPLL 407 (599)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr-~g~r~~~~~~~~ 407 (599)
.+|.+.+..++.....+.....++.+.++ +|.+..+.++..+...++..++.++.|+++|| +|||+ .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------~ 87 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------A 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------H
Confidence 45666666666656666666677777655 79999999999999999999999999999999 89886 6
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCc--ccchhhhhhccchhhhhHhhhhHH
Q 047229 408 LTLVILFSCIGYLLIAFAV-HNSLYFASIIIGFCLGAQLSLLVTIISELFGLKH--YSTLYNVGSVSSPIGSYIFNVRVA 484 (599)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~--~g~~~g~~~~~~~ig~~i~~~~l~ 484 (599)
+..+.++..++.++....+ ...+++..++.|++.+...+....++.|.+|+++ ++.+.++.+....+|.. ++|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHHH
Confidence 6777777777776666543 4556777888999999999999999999999988 77888888888999976 899999
Q ss_pred HHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047229 485 GRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSIILVL 531 (599)
Q Consensus 485 g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 531 (599)
+.+.+. .+|+..|++.++..+++.++..+..+
T Consensus 167 ~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 167 GAAQEA---------------AGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHH---------------SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---------------hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999887 35999999988777776666554443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=7.9e-12 Score=129.24 Aligned_cols=143 Identities=15% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHH
Q 047229 339 LFTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIG 418 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 418 (599)
+.+.+++...........+|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~l~~~~~~~~~~ 104 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH------HHHHHHHHHHHH
Confidence 33344433333334445577777889999999999999999999999999999999999886 667777777777
Q ss_pred HHHH---HHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHH
Q 047229 419 YLLI---AFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLY 488 (599)
Q Consensus 419 ~~~~---~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~ 488 (599)
.++. ... +...+++..++.|++.+...+....++.|.+|+++|+.+.|+.+....+|.. ++|.+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~ 177 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6665 333 3455677788899999999999999999999999999999999999999976 8999888887
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.28 E-value=9.9e-12 Score=125.68 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=127.8
Q ss_pred HHHHHhhhcchhhhhcchHHHHHHcCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 047229 340 FTATTCSIGGALAAIDNMGQIGKALGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGY 419 (599)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 419 (599)
.+..++.......+...++.+.+++|.++.+.+...+...++..++.++.|+++||+|||+ .+..+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP------VILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHH
Confidence 3344444444444555677777788999999999999999999999999999999999886 3345555555555
Q ss_pred HHHHHh-hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHHHhhhhhhcCCC
Q 047229 420 LLIAFA-VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRLYDREALKQGKG 498 (599)
Q Consensus 420 ~~~~~~-~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~~~~~~~~~~~~ 498 (599)
++.... +...+++..++.|++.+...+....++.|.+|+++|+.+.++......+|.. ++|.+.+.+.+.
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~-------- 150 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTM-------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCH--------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHh--------
Confidence 554443 3455667778889999999999999999999999999999999999999976 899999988876
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHH
Q 047229 499 GLNCIGARCYRVAFVTISAATFFACI 524 (599)
Q Consensus 499 ~~~~~~~~~~~~~f~~~~~~~~i~~i 524 (599)
.+|+..|++.+++.++..+
T Consensus 151 -------~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 151 -------WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHC
T ss_pred -------ccHHHHHHHHHHHHHHHHH
Confidence 3589899887776665554
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.23 E-value=6.1e-11 Score=125.70 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHhhhcchhhhhcchHHHHHH-cC------CCCcchhhhHHHHHHHHHHHHHHhhhhhhhh-hhhccCCch
Q 047229 334 IDMLILFTATTCSIGGALAAIDNMGQIGKA-LG------YPTHSIASFISLISIWNFLGRIVAGFASEIF-LAKYKVPRP 405 (599)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~-g~r~~~~~~ 405 (599)
+.+|.+.+..++.....+....+++.++++ +| +++.+.+.+.+...++..++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 345666666666666666666777777655 68 9999999999999999999999999999999 9886
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhh---hhccchhhhhHhh
Q 047229 406 LLLTLVILFSCIGYLLIAFA--VHNSLYFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNV---GSVSSPIGSYIFN 480 (599)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~---~~~~~~ig~~i~~ 480 (599)
.+..+.++.+++.++.... +...+++..++.|++.+...+...+++.|.+|+++++...+. .+....+|.. ++
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g 164 (524)
T 2xut_A 87 -TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FA 164 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 5666666777666665554 344566778888999999999999999999999999766555 7788888875 89
Q ss_pred hhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 047229 481 VRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAATFFACIVSI 527 (599)
Q Consensus 481 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 527 (599)
|.+.+.+.+. .+|+..|++.+++.+++.+...
T Consensus 165 ~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKN---------------FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHT---------------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 9989988876 3599999988877666555443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.92 E-value=1.3e-09 Score=114.30 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=88.6
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH-------------------hhhhhH
Q 047229 370 SIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLLLTLVILFSCIGYLLIAF-------------------AVHNSL 430 (599)
Q Consensus 370 ~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 430 (599)
..+++.+.+.++..+|.++.|+++||+|||+ .+.++.++..++.++... .+...+
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 3456677788999999999999999999986 677777777777666542 234457
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhCCCcccchhhhhhccchhhhhHhhhhHHHHH
Q 047229 431 YFASIIIGFCLGAQLSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYIFNVRVAGRL 487 (599)
Q Consensus 431 ~i~~~l~g~~~g~~~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~~ 487 (599)
++.-++.|++.|+..+..+.+++|..|+++|+...++......+|.. +++.+....
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~ 185 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhh
Confidence 78889999999999999999999999999999999998888877754 554444433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.91 E-value=4e-10 Score=115.60 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=107.8
Q ss_pred HhhcchhHHHHHHHHHhhhcchhhhhcchHHHHHH-cCCCCcchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccCCchHH
Q 047229 329 QAIFSIDMLILFTATTCSIGGALAAIDNMGQIGKA-LGYPTHSIASFISLISIWNFLGRIVAGFASEIFLAKYKVPRPLL 407 (599)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~ig~~~~g~l~dr~g~r~~~~~~~~ 407 (599)
+.+|+|++|.+....++..........+++.++++ .|.++.+.+.+.+...++..+++++.|+++||+|||+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~------~ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------Y 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------H
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------H
Confidence 36789999988877776665556667778888876 6999999999999999999999999999999999886 3
Q ss_pred HHHHHHHHHHH---HHHHHHhhh--hhHHHHHHHHHHHhhhH----HHHHHHHHHHhhCCCcccchhhhhhccchhhhhH
Q 047229 408 LTLVILFSCIG---YLLIAFAVH--NSLYFASIIIGFCLGAQ----LSLLVTIISELFGLKHYSTLYNVGSVSSPIGSYI 478 (599)
Q Consensus 408 ~~~~~~~~~~~---~~~~~~~~~--~~~~i~~~l~g~~~g~~----~~~~~~~~~e~~~~~~~g~~~g~~~~~~~ig~~i 478 (599)
+..+..+..+. ......... ........+.+++.+.. .+....+..+. +++++..+|.......+|..
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~- 152 (417)
T 2cfq_A 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWA- 152 (417)
T ss_dssp HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHH-
Confidence 34333333221 111111110 01112222223333332 33333444332 14667788888888888875
Q ss_pred hhhhHHHHHHhhhhhhcCCCCccccCcchHHHHHHHHHHHH
Q 047229 479 FNVRVAGRLYDREALKQGKGGLNCIGARCYRVAFVTISAAT 519 (599)
Q Consensus 479 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 519 (599)
++|.+.+.+.+. +|+..|++.++..
T Consensus 153 ~~~~l~~~l~~~----------------~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 153 LGASIVGIMFTI----------------NNQFVFWLGSGCA 177 (417)
T ss_dssp HHHHHHHHHHHH----------------CSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHh----------------chhHHHHHHHHHH
Confidence 889999988764 3677787665543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=49.16 E-value=5.9 Score=20.38 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=11.5
Q ss_pred hhhhhhcccCChHH
Q 047229 81 LAGLTYEVAPPWIV 94 (599)
Q Consensus 81 ~~G~l~Dr~G~r~~ 94 (599)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46899999999864
No 16
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=36.39 E-value=17 Score=34.17 Aligned_cols=11 Identities=0% Similarity=-0.221 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 047229 508 YRVAFVTISAA 518 (599)
Q Consensus 508 ~~~~f~~~~~~ 518 (599)
+.|.|++.-.+
T Consensus 207 ~~WVy~vgPii 217 (301)
T 2zz9_A 207 NHWIYWVGPII 217 (301)
T ss_dssp TTTHHHHHHHH
T ss_pred ceeeeeeHHHH
Confidence 55666665443
No 17
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.06 E-value=89 Score=22.42 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047229 509 RVAFVTISAATFFACIVSI 527 (599)
Q Consensus 509 ~~~f~~~~~~~~i~~i~~~ 527 (599)
.....+.+++.++++++.+
T Consensus 12 ~Iv~gvi~gilliGlllll 30 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALL 30 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3333444444445554433
Done!