BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047232
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 5 DHAKKTTELALTLFELISEALGLNANRL-KDMDCAEGLFLLG--HYYPACPEPELTMGTD 61
++AK LA +F+ +S LGL +RL K++ E L L +YYP CP+PEL +G +
Sbjct: 170 EYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVE 229
Query: 62 SHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFR 121
+H D S LT +L + + GLQ+ +E +WV + ++V+++GD ++ + + R
Sbjct: 230 AHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK-SILHR 288
Query: 122 SHFQSEKARL--------------YGPINELLSEENPPIYKEITVKEYLSHS 159
EK R+ P+ E++S E+P + T +++ H
Sbjct: 289 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 5 DHAKKTTELALTLFELISEALGLNANRL-KDMDCAEGLFLLG--HYYPACPEPELTMGTD 61
++AK LA +F+ +S LGL +RL K++ E L L +YYP CP+PEL +G +
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVE 230
Query: 62 SHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFR 121
+H D S LT +L + + GLQ+ +E +WV + ++V+++GD ++ + + R
Sbjct: 231 AHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK-SILHR 289
Query: 122 SHFQSEKARL--------------YGPINELLSEENPPIYKEITVKEYLSHS 159
EK R+ P+ E++S E+P + T +++ H
Sbjct: 290 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 5 DHAKKTTELALTLFELISEALGLNANRL-KDMDCAEGLFLLG--HYYPACPEPELTMGTD 61
++AK LA +F+ +S LGL +RL K++ E L L +YYP CP+PEL +G +
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVE 230
Query: 62 SHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFR 121
+H D S LT +L + + GLQ+ +E +WV + ++V ++GD ++ + + R
Sbjct: 231 AHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYK-SILHR 289
Query: 122 SHFQSEKARL--------------YGPINELLSEENPPIYKEITVKEYLSHS 159
EK R+ P+ E +S E+P + T +++ H
Sbjct: 290 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 1 DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLG---HYYPACPEPELT 57
++ D AK+ +LA L +L+ E LGL LK+ G YP CP+P+L
Sbjct: 112 EVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLI 171
Query: 58 MGTDSHADTSFLTVLLQD-RLGGLQVLHENEWVNVTPIHGALVVNLGDMMQA-------- 108
G +H D + +L QD ++ GLQ+L + +W++V P ++VVNLGD ++
Sbjct: 172 KGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKS 231
Query: 109 --------NVGPRVSVACFFRSHFQSEKARLY-GP-INELLSEENPPIYKEITVKEYLSH 158
G R S+A F+ A +Y P + E +EEN +Y + +Y
Sbjct: 232 VXHRVIAQKDGARXSLASFYNP---GSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
Query: 159 SYSIGLDGTSP 169
+ P
Sbjct: 289 YAGLKFQAKEP 299
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 47 YYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVL-HENEWVNVTPIHGALVVNLGDM 105
+YP P+ + +H D + +T+LL GGL+VL + +W+ + P G LV+N+GD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDX 234
Query: 106 MQA---NV-----------------GPRVSVACFFRSHFQSEKARLYGPINELLSEENPP 145
++ NV PR S F HF S+ + ++ ENP
Sbjct: 235 LERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFL--HFASDYE--IKTLQNCVTAENPD 290
Query: 146 IYKE-ITVKEYLSH 158
Y E IT E+L
Sbjct: 291 RYPESITADEFLQQ 304
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 41 LFLLGHYYPACPEPEL-TMGTDSHADTSFLTVLLQDRLGGLQV-LHENEWVNVTPIHGAL 98
L + HY P + E + +H D + +TVL GLQV + W++V G +
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNI 210
Query: 99 VVNLGDMMQ 107
++N+GD +Q
Sbjct: 211 IINIGDXLQ 219
>pdb|2Y9J|Y Chain Y, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|Z Chain Z, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|AA Chain a, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|BB Chain b, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|CC Chain c, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|DD Chain d, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|EE Chain e, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|FF Chain f, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|GG Chain g, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|HH Chain h, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|II Chain i, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|JJ Chain j, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|KK Chain k, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|LL Chain l, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|MM Chain m, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|NN Chain n, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|OO Chain o, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|PP Chain p, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|QQ Chain q, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|RR Chain r, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|SS Chain s, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|TT Chain t, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|UU Chain u, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|VV Chain v, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
Length = 170
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 112 PRVSVACFFR-----SHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDG 166
PRV +A F S ++EKARLY I + L + + ++ + ++S+ G +G
Sbjct: 61 PRVEIAQMFPADSLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENG 120
Query: 167 TSP 169
P
Sbjct: 121 RPP 123
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 112 PRVSVACFFRSHFQ--SEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLD 165
PR FFR + +K + + + EENP + + VK YLS+ YS +D
Sbjct: 164 PRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEID 219
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 112 PRVSVACFFRSHFQ--SEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLD 165
PR FFR + +K + + + EENP + + VK YLS+ YS +D
Sbjct: 164 PRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEID 219
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 53 EPE-LTMGTDSH-ADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANV 110
EPE L G DS DTS + +RLGG QV+ +W P G ++L D M
Sbjct: 12 EPEVLYSGYDSTLPDTSTRLMSTLNRLGGRQVVSAVKWAKALP--GFRNLHLDDQMTLLQ 69
Query: 111 GPRVSVACF---FRSHFQS 126
+S+ F +RS+ QS
Sbjct: 70 YSWMSLMAFSLGWRSYKQS 88
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 53 EPE-LTMGTDSH-ADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANV 110
EPE L G DS DTS + +RLGG QV+ +W P G ++L D M
Sbjct: 14 EPEVLYSGYDSTLPDTSTRLMSTLNRLGGRQVVSAVKWAKALP--GFRNLHLDDQMTLLQ 71
Query: 111 GPRVSVACF---FRSHFQS 126
+S+ F +RS+ QS
Sbjct: 72 YSWMSLMAFSLGWRSYKQS 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,234,288
Number of Sequences: 62578
Number of extensions: 198014
Number of successful extensions: 495
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 15
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)