BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047235
MKTLPLRPSTISFSSSPPRSHHIPKLHPQLQSPRFSVLRSSIQPQPQAPPIKRESDTSRT
EYKPGVLDDLFLSSFRNKLVQEVGLDSEKPGYDGLIELVNHLMMKGKSSSDARDAAQIRI
LVSLFPPLVLKLYKILISPLAGGKIAAMMVARVTALTCQWLMGHCTVNSVDLPDGTSCQS
GVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFSDYSCQFKFGILPPL
PKDDTTLKEPCLDICPTSSRRKEVAMNSNVEQCPKA

High Scoring Gene Products

Symbol, full name Information P value
AT4G01995 protein from Arabidopsis thaliana 3.8e-78
AT1G64680 protein from Arabidopsis thaliana 6.2e-30
D27
AT1G03055
protein from Arabidopsis thaliana 6.6e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047235
        (276 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504955232 - symbol:AT4G01995 "AT4G01995" speci...   786  3.8e-78   1
TAIR|locus:2010856 - symbol:AT1G64680 "AT1G64680" species...   331  6.2e-30   1
TAIR|locus:505006097 - symbol:D27 "AT1G03055" species:370...   293  6.6e-26   1


>TAIR|locus:504955232 [details] [associations]
            symbol:AT4G01995 "AT4G01995" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.43223 InterPro:IPR025114 Pfam:PF13225 EMBL:AY062663
            EMBL:AY093324 IPI:IPI00517905 RefSeq:NP_680560.1 UniGene:At.27269
            PRIDE:Q8W4C4 EnsemblPlants:AT4G01995.1 GeneID:828173
            KEGG:ath:AT4G01995 TAIR:At4g01995 eggNOG:NOG298641
            HOGENOM:HOG000012571 InParanoid:Q8W4C4 OMA:CKLPTQT PhylomeDB:Q8W4C4
            ProtClustDB:CLSN2690274 Genevestigator:Q8W4C4 Uniprot:Q8W4C4
        Length = 258

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 149/226 (65%), Positives = 179/226 (79%)

Query:    51 IKRESDTSRTEYKPGVLDDLFLSSFRNKLVQEVGLDSEKPGYDGLIELVNHLMMKGKSSS 110
             +K +    + EYKPG LDD F+ SFRNKLV+EVG DSEKPGY GLIELV  L++KG++ S
Sbjct:    41 VKSDEGAPKLEYKPGPLDDFFMQSFRNKLVEEVGSDSEKPGYVGLIELVKLLLLKGRTRS 100

Query:   111 DARDAAQIRILVSLFPPLVLKLYKILISPLAGGKIAAMMVARVTALTCQWLMGHCTVNSV 170
             +  DAA +RIL SLFPPL+L+LYK+LI+P+A GK+AA+MVARVT LTCQWLMG   VN +
Sbjct:   101 ETSDAA-VRILKSLFPPLILELYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNII 159

Query:   171 DLPDGTSCQSGVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFSDYSC 230
             DLP+G S  SGVFVE+C+YLEESKCVGVCINTCKLPTQTFFKDYMGVPL+MEPNF DYSC
Sbjct:   160 DLPNGESWDSGVFVEKCQYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSC 219

Query:   231 QFKFGILPPLPKDDTTLKEPCLDICPTSSRRKEVAMNSNVEQCPKA 276
             QFKFG+ PP  +DD  + EPC + C  + RRK   + S   +CP A
Sbjct:   220 QFKFGVAPP--EDDGNVNEPCFETCSIAGRRK---LKSG--ECPLA 258


>TAIR|locus:2010856 [details] [associations]
            symbol:AT1G64680 "AT1G64680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0016556 "mRNA modification" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941 EMBL:AC009519
            GO:GO:0009534 HOGENOM:HOG000242549 InterPro:IPR025114 Pfam:PF13225
            EMBL:BT010194 EMBL:AK226297 IPI:IPI00535028 PIR:H96669
            RefSeq:NP_564838.1 UniGene:At.28247 STRING:Q9SGU7 PaxDb:Q9SGU7
            PRIDE:Q9SGU7 EnsemblPlants:AT1G64680.1 GeneID:842776
            KEGG:ath:AT1G64680 TAIR:At1g64680 eggNOG:NOG29740 InParanoid:Q9SGU7
            OMA:FMGLFAR PhylomeDB:Q9SGU7 ProtClustDB:CLSN2917382
            Genevestigator:Q9SGU7 Uniprot:Q9SGU7
        Length = 250

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 73/210 (34%), Positives = 123/210 (58%)

Query:    59 RTEYKPGVLDDLFLSSFRNKLVQ---EVGLDSEKPG-----YDGLIELVNHLMMKGKSSS 110
             +T Y+ G+++ +F+  F  K+ +   +   D+++ G     Y+  +E V+  +M+G+S  
Sbjct:    36 KTRYEDGLVERVFMGLFARKMDKFGSKKKKDTKEKGFWEYDYESFVE-VSKRVMQGRSRV 94

Query:   111 DARDAAQIRILVSLFPPLVLKLYKILISPLAGGKIAAMMVARVTALTCQWLMGHCTVNSV 170
               ++A +  +L+S+ PP   + ++ L  P    K AA   A +T     WL+G   V  V
Sbjct:    95 QQQEAVR-EVLLSMLPPGAPEQFRKLFPPT---KWAAEFNAALTVPFFHWLVGPSQVIEV 150

Query:   171 DLPDGTSCQSGVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFSDYSC 230
             ++ +G   +SGV +++C+YLE S CVG+C+N CK+PTQ FF +  G+PL M PN+ D SC
Sbjct:   151 EV-NGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSC 209

Query:   231 QFKFGILPPLPKDDTTLKEPCL-DICPTSS 259
             +  +G  PP  ++D   K+PCL DIC  S+
Sbjct:   210 EMIYGQAPPAFEEDVATKQPCLADICSMSN 239


>TAIR|locus:505006097 [details] [associations]
            symbol:D27 "AT1G03055" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009536 "plastid" evidence=IDA]
            [GO:0010223 "secondary shoot formation" evidence=IMP] [GO:1901601
            "strigolactone biosynthetic process" evidence=IGI] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009536 GO:GO:0010223
            UniGene:At.42563 UniGene:At.51465 EMBL:BT010155 IPI:IPI00528297
            RefSeq:NP_563673.1 EnsemblPlants:AT1G03055.1 GeneID:838334
            KEGG:ath:AT1G03055 TAIR:At1g03055 eggNOG:NOG327291
            HOGENOM:HOG000242549 InParanoid:Q7XA78 OMA:SNCVGMC PhylomeDB:Q7XA78
            ProtClustDB:CLSN2687636 Genevestigator:Q7XA78 GO:GO:1901601
            InterPro:IPR025114 Pfam:PF13225 Uniprot:Q7XA78
        Length = 264

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 67/221 (30%), Positives = 121/221 (54%)

Query:    51 IKRESDTSRTEY---KPGVLDDLFLS----SFRNKLVQEV-GLDSEKPG--YDGLIELVN 100
             +K   +T+R E    K   ++D F S    ++ +K +Q+  G+ S      YD L++   
Sbjct:    46 LKAAKETARIETSNTKNASIEDSFFSKIAINYLSKNLQDAAGISSSSKSTDYDRLVDTAT 105

Query:   101 HLMMKGKSSSDARDAAQIRILVSL---FPPLVLKLYKILISPLAGGKIAAMMVARVTALT 157
              +      + D +   +  +L SL    P ++  L K+   P    K++  + A  T ++
Sbjct:   106 RV----SRNFDTKQQHEF-VLSSLDRALPTVISSLIKMAFPP---SKVSRELFALFTTIS 157

Query:   158 CQWLMGHCTVNSVDLPDGTSCQSGVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGV 217
               WL+G   V   ++ +G   +S V++E+C++LE+S CVG+C + CK+P+Q F K+ +G+
Sbjct:   158 FAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGM 216

Query:   218 PLLMEPNFSDYSCQFKFGILPPLPKDDTTLKEPCLDICPTS 258
             P+ MEP+F+D SC+  FG  PP  +DD  +K+PC + C ++
Sbjct:   217 PIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFEFCKSN 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       248   0.00079  114 3  11 22  0.42    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  187 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.03u 0.10s 20.13t   Elapsed:  00:00:01
  Total cpu time:  20.03u 0.10s 20.13t   Elapsed:  00:00:01
  Start:  Fri May 10 23:43:17 2013   End:  Fri May 10 23:43:18 2013

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