BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047235
         (276 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
           Complex
          Length = 754

 Score = 34.7 bits (78), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 56  DTSRTEYKPGVLDDLFLSSFRNKLVQEVGLDSEKPGYDGL-IELVNHLMMKGKSSSDARD 114
           ++ +  +  G LDDLFL  +++  + ++ L ++   + GL  EL+  +M++     DA  
Sbjct: 575 ESRKKRFCEGWLDDLFLDLYQDLKLSKISLSNKDEKHSGLEWELLGLIMLRTWHWEDAVA 634

Query: 115 AAQIRILVSLFPPLVLKLYKILISP---------LAGGKIAAMMVARVTALTCQWLMGHC 165
             +  I+    P    +L KI + P         L    I ++++ ++ +  C++   +C
Sbjct: 635 CLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI-SYDCRY-YNYC 692

Query: 166 TVNSVDLPDGTSCQSGVFVERCKYL 190
            + ++ L +    + G  + R K L
Sbjct: 693 QIFNLQLLEKLCNELGTHILRNKIL 717


>pdb|1VYF|A Chain A, Schistosoma Mansoni Fatty Acid Binding Protein In Complex
           With Oleic Acid
 pdb|1VYG|A Chain A, Schistosoma Mansoni Fatty Acid Binding Protein In Complex
           With Arachidonic Acid
          Length = 135

 Score = 31.2 bits (69), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 200 INTCKLPTQTFFKDYMGVPLLMEPNFSDYSCQFKFG 235
           I     PT TF  D   + +L E  F + SC FKFG
Sbjct: 34  IGNTVTPTVTFTMDGDKMTMLTESTFKNLSCTFKFG 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,051,681
Number of Sequences: 62578
Number of extensions: 271958
Number of successful extensions: 607
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 5
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)