BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047235
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4K8J3|AROC_PSEF5 Chorismate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=aroC PE=3 SV=1
Length = 363
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 173 PDGTSCQSGVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFSDYSCQF 232
PD SGVF E K G I T KDY + L P +DYS
Sbjct: 62 PDEVEILSGVF--------EGKTTGCSIGLLIRNTDQKSKDYSAIKDLFRPAHADYSYHH 113
Query: 233 KFGILPPLPKDDTTLKEPCLDICPTSSRRKEVA 265
K+GI ++ +E + + + +K +A
Sbjct: 114 KYGIRDYRGGGRSSARETAMRVAAGAIAKKYLA 146
>sp|A8FTS6|AROC_SHESH Chorismate synthase OS=Shewanella sediminis (strain HAW-EB3)
GN=aroC PE=3 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 173 PDGTSCQSGVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFSDYSCQF 232
PD SG+F E K G I T KDY + L P +DY+ Q
Sbjct: 62 PDEVRVLSGIF--------EGKTTGTSIGLMIENTDQRSKDYSNIKDLFRPGHADYTYQQ 113
Query: 233 KFGILPPLPKDDTTLKEPCLDICPTSSRRKEVAMNSNVE 271
K+G+ ++ +E + + + +K + +E
Sbjct: 114 KYGLRDYRGGGRSSARETAMRVAAGAVAKKYLKQVHGIE 152
>sp|B1KKS1|AROC_SHEWM Chorismate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32)
GN=aroC PE=3 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 173 PDGTSCQSGVFVERCKYLEESKCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFSDYSCQF 232
PD SG+F E K G I T KDY + L P +DY+ Q
Sbjct: 62 PDEVRVLSGIF--------EGKTTGTSIGLMIENTDQRSKDYSNIKDLFRPGHADYTYQQ 113
Query: 233 KFGILPPLPKDDTTLKEPCLDICPTSSRRKEVAMNSNVE 271
K+G+ ++ +E + + + +K + +E
Sbjct: 114 KYGLRDYRGGGRSSARETAMRVAAGAVAKKYLKQVHGIE 152
>sp|P40955|CHS6_YEAST Chitin biosynthesis protein CHS6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHS6 PE=1 SV=1
Length = 746
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 56 DTSRTEYKPGVLDDLFLSSFRNKLVQEVGLDSEKPGYDGL-IELVNHLMMKGKSSSDARD 114
++ + + G LDDLFL +++ + ++ L ++ + GL EL+ +M++ DA
Sbjct: 575 ESRKKRFCEGWLDDLFLDLYQDLKLSKISLSNKDEKHSGLEWELLGLIMLRTWHWEDAVA 634
Query: 115 AAQIRILVSLFPPLVLKLYKILISP---------LAGGKIAAMMVARVTALTCQWLMGHC 165
+ I+ P +L KI + P L I ++++ ++ + C++ +C
Sbjct: 635 CLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI-SYDCRY-YNYC 692
Query: 166 TVNSVDLPDGTSCQSGVFVERCKYL 190
+ ++ L + + G + R K L
Sbjct: 693 QIFNLQLLEKLCNELGTHILRNKIL 717
>sp|Q2HA26|UTP10_CHAGB U3 small nucleolar RNA-associated protein 10 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=UTP10 PE=3 SV=1
Length = 1728
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 65 GVLDDLFLSSFRNKLVQEVGLDSEKPGYDGLIELVNHLMMKGKSSSDARDAAQIRILVSL 124
G L+D+ L++F ++LV +D+ +PG L L H K SS A+ +++ LV
Sbjct: 236 GSLNDVALTAFMDQLVHGWNIDTYRPGLVCLCILAQHRAAKQVSSRIAKALIKVQDLV-- 293
Query: 125 FPPLVLKLYKILISPLAGGKIAAMMVARVT 154
P LV + + LA G +A + R++
Sbjct: 294 -PTLVEISRQHRVDKLANG-LALAFIERLS 321
>sp|E7F6T8|UBP37_DANRE Ubiquitin carboxyl-terminal hydrolase 37 OS=Danio rerio GN=usp37
PE=2 SV=1
Length = 937
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 7 RPSTISFSSSPPRS-----HHIP--KLHPQLQSPRFSVLRSSIQPQPQAPPIKRESDTSR 59
RPS+ S RS H P K+ P L ++ R S+ QPQ PP++ S+
Sbjct: 271 RPSSTGSCPSAKRSLVLPNHSTPFKKVRPTLDYGGWNKPRPSVLAQPQ-PPLQGFSNLGN 329
Query: 60 TEYKPGVLDDLF-LSSFRNKLVQEVGLDSEKPGYDGLIELVNHLMMK 105
T Y +L LF L SF N L+++ G+ ++ + L+ HL+ K
Sbjct: 330 TCYMNAILQSLFSLPSFSNDLLKQ-GIPWKRVPINALLRRFAHLLAK 375
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,628,094
Number of Sequences: 539616
Number of extensions: 4376696
Number of successful extensions: 10466
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10449
Number of HSP's gapped (non-prelim): 29
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)