Query 047235
Match_columns 276
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 58.9 16 0.00056 29.8 5.4 72 61-138 37-108 (119)
2 2hm3_A Nematocyst outer WALL a 35.0 14 0.00047 23.6 1.1 13 192-204 9-21 (31)
3 2nx7_A Nematocyst outer WALL a 29.6 15 0.0005 23.0 0.5 16 190-205 7-22 (28)
4 3e07_A Protein spaetzle; cysti 24.3 24 0.00082 28.5 1.0 21 178-199 38-58 (114)
5 1juq_A ADP-ribosylation factor 20.0 1.5E+02 0.0052 24.6 5.2 31 75-105 14-44 (171)
6 1hbk_A ACBP, acyl-COA binding 19.4 2.9E+02 0.0099 20.6 7.7 61 68-129 24-88 (89)
7 3rru_A TOM1L1 protein; structu 19.3 2.2E+02 0.0076 23.3 6.0 32 74-105 16-47 (152)
8 2cop_A Acyl-coenzyme A binding 17.4 3.6E+02 0.012 21.1 6.6 61 68-129 28-92 (109)
9 3ldz_A STAM-1, signal transduc 16.9 2.3E+02 0.0077 22.6 5.4 27 77-103 8-34 (140)
10 3zyq_A Hepatocyte growth facto 16.1 3.7E+02 0.013 22.9 7.0 29 77-105 11-39 (226)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=58.91 E-value=16 Score=29.80 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=54.3
Q ss_pred ccCCChhhHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Q 047235 61 EYKPGVLDDLFLSSFRNKLVQEVGLDSEKPGYDGLIELVNHLMMKGKSSSDARDAAQIRILVSLFPPLVLKLYKILIS 138 (276)
Q Consensus 61 ~Y~ds~lD~~~l~lF~rkm~~~~G~ds~~~GYdglVe~a~~lm~kgrs~~eq~~~~~~rVL~sl~Pp~~~~~fr~lf~ 138 (276)
.|.++.+|+.+--+..+|+.+.+|...+ -|||..-..+.+..++.+.++.. ..+|..=-..++-.++|.|+-
T Consensus 37 ~vd~~~i~~~lkPWI~kKI~E~LG~eEd-----~LVdfI~~~L~~~~~pk~l~~~L-~~~LDeeA~~FV~kLWrlLIf 108 (119)
T 3v53_A 37 IVDSILMERRIRPWINKKIIEYIGEEEA-----TLVDFVCSKVMAHSSPQSILDDV-AMVLDEEAEVFIVKMWRLLIY 108 (119)
T ss_dssp TSCHHHHHHTHHHHHHHHHHHHTC---C-----HHHHHHHHHHHTTCCHHHHHHHH-HHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHcCCCHHHHHHHH-HHHHHhhHHHHHHHHHHHHHH
Confidence 4566788888999999999999998643 47887755566777887777776 788887677778888888773
No 2
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=34.95 E-value=14 Score=23.61 Aligned_cols=13 Identities=46% Similarity=1.007 Sum_probs=11.6
Q ss_pred ccCcccccccccC
Q 047235 192 ESKCVGVCINTCK 204 (276)
Q Consensus 192 eSgC~GmCvN~CK 204 (276)
-|||.|-|-.-||
T Consensus 9 psgcsgdcypeck 21 (31)
T 2hm3_A 9 PSGCSGDCYPECK 21 (31)
T ss_dssp CTTCCGGGTTTTC
T ss_pred CCCcCccccCccC
Confidence 3899999999998
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=29.62 E-value=15 Score=23.02 Aligned_cols=16 Identities=31% Similarity=0.964 Sum_probs=14.3
Q ss_pred ccccCcccccccccCC
Q 047235 190 LEESKCVGVCINTCKL 205 (276)
Q Consensus 190 LEeSgC~GmCvN~CKi 205 (276)
|++-||.+.|..-|.+
T Consensus 7 lqqpgcssacapacrl 22 (28)
T 2nx7_A 7 LQQPGCSSACAPACRL 22 (28)
T ss_dssp HHSTTCCGGGTTTCCH
T ss_pred ccCCCccccccchhhe
Confidence 7889999999999875
No 4
>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster}
Probab=24.28 E-value=24 Score=28.47 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=16.0
Q ss_pred eccceEeeccccccccCccccc
Q 047235 178 CQSGVFVERCKYLEESKCVGVC 199 (276)
Q Consensus 178 ~~sgV~IeKCRyLEeSgC~GmC 199 (276)
.+++|+||+|++ +.+-|...|
T Consensus 38 y~Q~vriE~C~~-~g~~C~~~~ 58 (114)
T 3e07_A 38 YKQAIQIEECEG-ADQPCDFAA 58 (114)
T ss_dssp CEEEEEEEEESS-TTSBCTTGG
T ss_pred cEEEEEEEEeCC-CCCcccccc
Confidence 579999999999 455566554
No 5
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.05 E-value=1.5e+02 Score=24.61 Aligned_cols=31 Identities=6% Similarity=0.203 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHhc
Q 047235 75 FRNKLVQEVGLDSEKPGYDGLIELVNHLMMK 105 (276)
Q Consensus 75 F~rkm~~~~G~ds~~~GYdglVe~a~~lm~k 105 (276)
|...+.+++.-....++|..++|++..+..+
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~ 44 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKE 44 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcC
Confidence 5567788887777789999999999877644
No 6
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=19.37 E-value=2.9e+02 Score=20.64 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHhCC-CCCCCchHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHhCChhh
Q 047235 68 DDLFLSSFRNKLVQEVGL-DSEKPGYDGLIELVNHL---MMKGKSSSDARDAAQIRILVSLFPPLV 129 (276)
Q Consensus 68 D~~~l~lF~rkm~~~~G~-ds~~~GYdglVe~a~~l---m~kgrs~~eq~~~~~~rVL~sl~Pp~~ 129 (276)
+...|.|..---+.-.|- +.+++|.-.++..++.- ..+|.|..|..+.- +..+..++|.|.
T Consensus 24 ~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Y-I~~v~~l~~~~~ 88 (89)
T 1hbk_A 24 NELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRY-VDIVSEIFPYWQ 88 (89)
T ss_dssp HHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHH-HHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHccccc
Confidence 444444444444445563 44678876688776543 23799999988888 899999998763
No 7
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=19.32 E-value=2.2e+02 Score=23.30 Aligned_cols=32 Identities=3% Similarity=0.085 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHhc
Q 047235 74 SFRNKLVQEVGLDSEKPGYDGLIELVNHLMMK 105 (276)
Q Consensus 74 lF~rkm~~~~G~ds~~~GYdglVe~a~~lm~k 105 (276)
-|...+.+++.-....++|+.++|++..+..+
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~ileicD~In~~ 47 (152)
T 3rru_A 16 SVGHLIEKATFAGVQTEDWGQFMHICDIINTT 47 (152)
T ss_dssp HHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhCC
Confidence 34566778888777889999999999977654
No 8
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.42 E-value=3.6e+02 Score=21.07 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHhCChhh
Q 047235 68 DDLFLSSFRNKLVQEVGL-DSEKPGYDGLIELVNHLM---MKGKSSSDARDAAQIRILVSLFPPLV 129 (276)
Q Consensus 68 D~~~l~lF~rkm~~~~G~-ds~~~GYdglVe~a~~lm---~kgrs~~eq~~~~~~rVL~sl~Pp~~ 129 (276)
|...|.|+.---+...|- +..++|+-.++..++.-. .+|.|..|..+.- +..+..|+|.|.
T Consensus 28 ~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~Y-I~lv~~l~~~~~ 92 (109)
T 2cop_A 28 REQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEY-IAVVKKLDPGWN 92 (109)
T ss_dssp HHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHH-HHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhhhhc
Confidence 444455544444445563 346778777888776442 3688998888888 889999988764
No 9
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=16.90 E-value=2.3e+02 Score=22.61 Aligned_cols=27 Identities=0% Similarity=0.116 Sum_probs=21.7
Q ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHH
Q 047235 77 NKLVQEVGLDSEKPGYDGLIELVNHLM 103 (276)
Q Consensus 77 rkm~~~~G~ds~~~GYdglVe~a~~lm 103 (276)
..+.+++......++|+.++|++..+.
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~ 34 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVG 34 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHH
Confidence 456777877777899999999998764
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=16.13 E-value=3.7e+02 Score=22.94 Aligned_cols=29 Identities=3% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHHhc
Q 047235 77 NKLVQEVGLDSEKPGYDGLIELVNHLMMK 105 (276)
Q Consensus 77 rkm~~~~G~ds~~~GYdglVe~a~~lm~k 105 (276)
..+.+++.-....++|+.++|++..+..+
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~~ 39 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQG 39 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCC
Confidence 35677777777788999999999876543
Done!