Query 047235
Match_columns 276
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 15:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047235.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047235hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fs1b1 a.157.1.1 (B:86-140) C 42.2 11 0.00083 24.9 3.4 25 91-115 26-53 (55)
2 d1nexa1 a.157.1.1 (A:116-185) 30.6 21 0.0015 24.4 3.4 25 91-115 27-54 (70)
3 d1dvpa1 a.118.9.2 (A:1-145) Hr 26.2 96 0.007 22.9 7.0 37 75-111 6-42 (145)
4 d1sopa_ g.71.1.1 (A:) Mini-col 16.6 19 0.0014 20.7 0.6 10 195-204 6-15 (26)
5 d2fug91 d.58.1.5 (9:26-179) NA 15.5 24 0.0018 26.5 1.2 21 194-226 75-95 (154)
6 d1hbka_ a.11.1.1 (A:) Acyl-CoA 15.3 1.8E+02 0.013 20.2 7.6 46 82-128 38-87 (89)
7 d1elka_ a.118.9.2 (A:) Tom1 pr 14.5 1.6E+02 0.012 21.9 6.0 30 75-104 13-42 (153)
8 d1ha9a_ g.3.2.1 (A:) Trypsin i 13.5 23 0.0017 21.6 0.4 17 183-201 11-27 (34)
9 d1mhqa_ a.118.9.2 (A:) ADP-rib 12.9 1.8E+02 0.013 21.4 5.7 30 75-104 2-31 (143)
10 d1szia_ a.24.23.1 (A:) Mannose 12.2 23 0.0017 29.7 0.2 13 153-165 208-220 (226)
No 1
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.21 E-value=11 Score=24.88 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=18.5
Q ss_pred chHHHHHHHHHH---HhcCCChHHHHHH
Q 047235 91 GYDGLIELVNHL---MMKGKSSSDARDA 115 (276)
Q Consensus 91 GYdglVe~a~~l---m~kgrs~~eq~~~ 115 (276)
+.++|++++-+- |++|+|+.|.|+.
T Consensus 26 ~I~~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 26 DIKGLLDVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 567888877332 7899999988763
No 2
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.61 E-value=21 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=18.5
Q ss_pred chHHHHHHHHHH---HhcCCChHHHHHH
Q 047235 91 GYDGLIELVNHL---MMKGKSSSDARDA 115 (276)
Q Consensus 91 GYdglVe~a~~l---m~kgrs~~eq~~~ 115 (276)
++++|++++-+- |++|+|+.|.|+.
T Consensus 27 ~I~~Ll~l~c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 27 NIKPLLDAGCKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 577888887433 6799999887654
No 3
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.20 E-value=96 Score=22.89 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHhcCCChHH
Q 047235 75 FRNKLVQEVGLDSEKPGYDGLIELVNHLMMKGKSSSD 111 (276)
Q Consensus 75 F~rkm~~~~G~ds~~~GYdglVe~a~~lm~kgrs~~e 111 (276)
|-+.+.+++.-....++|+.+++++..+..+...+.+
T Consensus 6 ~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~ 42 (145)
T d1dvpa1 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKN 42 (145)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHH
Confidence 6677888888888899999999999877544334433
No 4
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp. [TaxId: 6086]}
Probab=16.55 E-value=19 Score=20.74 Aligned_cols=10 Identities=50% Similarity=1.364 Sum_probs=6.5
Q ss_pred cccccccccC
Q 047235 195 CVGVCINTCK 204 (276)
Q Consensus 195 C~GmCvN~CK 204 (276)
|+..|+.+|+
T Consensus 6 cvaqcvptcp 15 (26)
T d1sopa_ 6 CVAQCVPTCP 15 (26)
T ss_dssp TTTCCCTTSC
T ss_pred hhhhccCCCc
Confidence 6666666664
No 5
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
Probab=15.46 E-value=24 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.763 Sum_probs=15.7
Q ss_pred CcccccccccCCchhhhhhhhcCCceeeccCcc
Q 047235 194 KCVGVCINTCKLPTQTFFKDYMGVPLLMEPNFS 226 (276)
Q Consensus 194 gC~GmCvN~CKiPTQ~FF~e~~GlPLtM~PNFE 226 (276)
+| |.|+..|+.= -|.|++|||
T Consensus 75 ~C-G~Cve~CPt~-----------AI~~~~~~e 95 (154)
T d2fug91 75 FC-GLCEEACPTG-----------AIVLGYDFE 95 (154)
T ss_dssp CC-THHHHHCSSS-----------CEEECSCCC
T ss_pred CC-CCchhhCCCC-----------eEeccCccc
Confidence 46 7999999852 567777776
No 6
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}
Probab=15.33 E-value=1.8e+02 Score=20.20 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=34.1
Q ss_pred HhCC-CCCCCchHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHhCChh
Q 047235 82 EVGL-DSEKPGYDGLIELVNHL---MMKGKSSSDARDAAQIRILVSLFPPL 128 (276)
Q Consensus 82 ~~G~-ds~~~GYdglVe~a~~l---m~kgrs~~eq~~~~~~rVL~sl~Pp~ 128 (276)
..|- +.+++|+-.+++.++.- ..+|.|..+..+.- +..+..|+|.|
T Consensus 38 t~G~~~~~~P~~~~~~~~~Kw~AW~~l~gms~~eA~~~Y-i~~v~~l~p~w 87 (89)
T d1hbka_ 38 TIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRY-VDIVSEIFPYW 87 (89)
T ss_dssp HTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHH-HHHHHHHCTTT
T ss_pred hcCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHHHcccc
Confidence 3464 55677777777776433 34799999988888 89999999976
No 7
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.50 E-value=1.6e+02 Score=21.91 Aligned_cols=30 Identities=3% Similarity=0.050 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHh
Q 047235 75 FRNKLVQEVGLDSEKPGYDGLIELVNHLMM 104 (276)
Q Consensus 75 F~rkm~~~~G~ds~~~GYdglVe~a~~lm~ 104 (276)
+.+.+.+++.-....++|+.++|++..+..
T Consensus 13 ~~~~vekAT~~~l~~~dw~~il~icD~In~ 42 (153)
T d1elka_ 13 VGQRIEKATDGSLQSEDWALNMEICDIINE 42 (153)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHhC
Confidence 345677888888888999999999987753
No 8
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=13.52 E-value=23 Score=21.62 Aligned_cols=17 Identities=35% Similarity=1.112 Sum_probs=13.7
Q ss_pred EeeccccccccCccccccc
Q 047235 183 FVERCKYLEESKCVGVCIN 201 (276)
Q Consensus 183 ~IeKCRyLEeSgC~GmCvN 201 (276)
.+|||| ..|.|.|-|+-
T Consensus 11 ilkkcr--rdsdc~~~cic 27 (34)
T d1ha9a_ 11 ILKKCR--RDSDCPGACIC 27 (34)
T ss_dssp CCCBCS--SGGGSCTTCCB
T ss_pred HHHHhc--cccCCCcccee
Confidence 468898 68899999974
No 9
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.91 E-value=1.8e+02 Score=21.39 Aligned_cols=30 Identities=3% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHh
Q 047235 75 FRNKLVQEVGLDSEKPGYDGLIELVNHLMM 104 (276)
Q Consensus 75 F~rkm~~~~G~ds~~~GYdglVe~a~~lm~ 104 (276)
|-..+.+++.-....++|+++++++..+..
T Consensus 2 le~liekAT~~~~~~~dw~~il~icD~I~~ 31 (143)
T d1mhqa_ 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNT 31 (143)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHc
Confidence 345677888877888999999999987753
No 10
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.17 E-value=23 Score=29.68 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=9.1
Q ss_pred Hhhhcccccccce
Q 047235 153 VTALTCQWLMGHC 165 (276)
Q Consensus 153 vT~~~f~WLVGP~ 165 (276)
+...=..|||||=
T Consensus 208 ~~ntPL~WLVGPF 220 (226)
T d1szia_ 208 AQNTPAMWLVGPF 220 (226)
T ss_dssp HTCCCTTCEEEEE
T ss_pred hcCCCcccccCCC
Confidence 3344469999995
Done!