BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047237
MTFQKEYLDLVLVPLGLLIMFTYHLFLLYRYLHHPHTTAFGFENNDKRAWVEKKDASVAI
TVITSNISAATFLSTVSLTLSSLIGAWLGSSTNNIFESELILGDTRASTISIKYISLLSC
FLLAFSCFVQSTRHFVHATYLISMPEDNVPVKYAEIAIIKGGEFWSLGLRALYFALNLLL
WFFGPIPMFLSSIILVIILHYLDTNTTPLHNYSTSESCTDQKVADRIYGKATFIDHNNNR
GCGLR

High Scoring Gene Products

Symbol, full name Information P value
AT5G46060 protein from Arabidopsis thaliana 1.5e-28
AT3G18215 protein from Arabidopsis thaliana 9.1e-13
AT5G24600 protein from Arabidopsis thaliana 1.9e-09

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047237
        (245 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161348 - symbol:AT5G46060 "AT5G46060" species...   318  1.5e-28   1
TAIR|locus:505006357 - symbol:AT3G18215 "AT3G18215" speci...   169  9.1e-13   1
TAIR|locus:2153909 - symbol:AT5G24600 species:3702 "Arabi...   140  1.9e-09   1


>TAIR|locus:2161348 [details] [associations]
            symbol:AT5G46060 "AT5G46060" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688 EMBL:AB006698
            InterPro:IPR006747 Pfam:PF04654 HOGENOM:HOG000238997 EMBL:AY924853
            EMBL:DQ132746 IPI:IPI00522029 RefSeq:NP_199418.1 UniGene:At.51439
            EnsemblPlants:AT5G46060.1 GeneID:834647 KEGG:ath:AT5G46060
            TAIR:At5g46060 InParanoid:Q9FNL6 OMA:IHSARYY PhylomeDB:Q9FNL6
            ProtClustDB:CLSN2916227 Genevestigator:Q9FNL6 Uniprot:Q9FNL6
        Length = 248

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 67/184 (36%), Positives = 102/184 (55%)

Query:    38 TAFGFENNDKRAWVEK-----KDA-SVAITVITSNISAATFXXXXXXXXXXXIGAWLGSS 91
             T  GF N DK  WV++     KD    A+TV++S+ISA+TF           IGAW+GSS
Sbjct:    40 TIIGFMNIDKSIWVDRIMQARKDELGGALTVLSSSISASTFMASIALTLSSLIGAWIGSS 99

Query:    92 --TNNIFESELILGDTRASTISIKYIXXXXXXXXXXXXXVQSTRHFVHATYLISMPEDNV 149
               +  +F    I GDT + T+ IKY              +QSTR F+HA YLI+ P +++
Sbjct:   100 PVSMTVFTGHFIYGDTSSITMVIKYTSLLICFLVAFCCFIQSTRCFLHANYLITTPGEDI 159

Query:   150 PVKYAEIAIIKGGEFWSXXXXXXXXXXXXXXWFFGPIPMFLSSIILVIILHYLDTNTT-- 207
             P    +  +++GG +WS              W FGP+PMF++S+++VI L++LD+N+   
Sbjct:   160 PPDMVKRFVLRGGNYWSLGLRALYLALDLLLWLFGPVPMFINSVLMVICLYFLDSNSVAQ 219

Query:   208 PLHN 211
             PL++
Sbjct:   220 PLYH 223


>TAIR|locus:505006357 [details] [associations]
            symbol:AT3G18215 "AT3G18215" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AB020749 InterPro:IPR006747
            Pfam:PF04654 HOGENOM:HOG000238997 EMBL:AY056224 EMBL:AY091383
            IPI:IPI00516396 RefSeq:NP_566601.1 UniGene:At.6061 STRING:Q9LV18
            EnsemblPlants:AT3G18215.1 GeneID:821349 KEGG:ath:AT3G18215
            TAIR:At3g18215 eggNOG:NOG282993 InParanoid:Q9LV18 OMA:QSIRYYA
            PhylomeDB:Q9LV18 ProtClustDB:CLSN2688522 ArrayExpress:Q9LV18
            Genevestigator:Q9LV18 Uniprot:Q9LV18
        Length = 244

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 48/193 (24%), Positives = 80/193 (41%)

Query:    38 TAFGFENNDKRAWVEK------KDASVAITVITSNISAATFXXXXXXXXXXXIGAWLG-S 90
             T        +R WV        K+ ++A+  I +NI A+T            IG ++  S
Sbjct:    37 TVIALNAESRRQWVFSMMTEPLKNGTLAVQTIRNNIMASTLLATTAITLCSIIGVFVSNS 96

Query:    91 STNNIFESELILGDTRASTISIKYIXXXXXXXXXXXXXVQSTRHFVHATYLISMPEDNVP 150
             S++    + LI G       S K               +QS R++ H ++L+++P     
Sbjct:    97 SSSKSTATNLIYGSKSPRLASFKNFAILICFLMAFLCNIQSIRYYAHVSFLVTVPVSRGK 156

Query:   151 VKYAEIA---IIKGGEFWSXXXXXXXXXXXXXXWFFGPIPMFLSSIILVIILHYLDTNTT 207
              ++ E     + +   FWS              W FGPIPMF+   ++  IL++LDT T+
Sbjct:   157 REHCEYVSRNLNRASYFWSLGLRAFYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTS 216

Query:   208 ---PLHNYSTSES 217
                 LH+ S  E+
Sbjct:   217 FTRHLHSQSFRET 229


>TAIR|locus:2153909 [details] [associations]
            symbol:AT5G24600 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] GO:GO:0005886 EMBL:CP002688 EMBL:AB010068 OMA:VNAINRR
            InterPro:IPR006747 Pfam:PF04654 EMBL:BT014790 EMBL:BT015014
            IPI:IPI00540625 RefSeq:NP_197848.1 UniGene:At.30952
            EnsemblPlants:AT5G24600.1 GeneID:832531 KEGG:ath:AT5G24600
            TAIR:At5g24600 HOGENOM:HOG000238997 InParanoid:Q9FLU4
            PhylomeDB:Q9FLU4 ProtClustDB:CLSN2686500 Genevestigator:Q9FLU4
            Uniprot:Q9FLU4
        Length = 248

 Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 41/165 (24%), Positives = 65/165 (39%)

Query:    54 KDASVAITVITSNISAATFXXXXXXXXXXXIGAWLGSSTNNIFESELILGDTRASTISIK 113
             K+  +A+  + +NI A+T            I   + S+T        + GD      S+K
Sbjct:    58 KNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGER-SVWFVFGDKSDRAFSLK 116

Query:   114 YIXXXXXXXXXXXXXVQSTRHFVHATYLISMP-----------EDN----VPVKYAEIAI 158
             +              VQS R++ HA+ LI++P             N    +   Y    +
Sbjct:   117 FFAILVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATV 176

Query:   159 IKGGEFWSXXXXXXXXXXXXXXWFFGPIPMFLSSIILVIILHYLD 203
              +G  FWS              W FGPIPMF++  +LV  L++LD
Sbjct:   177 NRGSYFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLD 221


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       182   0.00098  109 3  11 22  0.40    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.83u 0.23s 13.06t   Elapsed:  00:00:00
  Total cpu time:  12.83u 0.23s 13.06t   Elapsed:  00:00:00
  Start:  Fri May 10 23:46:39 2013   End:  Fri May 10 23:46:39 2013

Back to top