Query 047237
Match_columns 245
No_of_seqs 105 out of 286
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04654 DUF599: Protein of un 100.0 9.9E-65 2.1E-69 445.6 21.2 199 10-211 1-215 (216)
2 COG3821 Predicted membrane pro 100.0 8.6E-53 1.9E-57 362.2 16.3 198 6-206 3-218 (234)
3 PRK13823 conjugal transfer pro 42.4 35 0.00075 26.7 3.5 31 9-39 42-72 (94)
4 PRK14406 membrane protein; Pro 39.1 64 0.0014 28.5 5.0 54 174-232 143-197 (199)
5 PF11808 DUF3329: Domain of un 36.4 89 0.0019 23.7 4.9 28 172-199 15-42 (90)
6 TIGR02106 cyd_oper_ybgT cyd op 33.4 88 0.0019 19.6 3.5 20 178-197 3-22 (30)
7 COG1288 Predicted membrane pro 31.5 92 0.002 31.1 5.2 48 6-53 216-264 (481)
8 PRK10278 hypothetical protein; 31.1 2E+02 0.0044 23.7 6.5 31 108-138 73-109 (130)
9 TIGR00985 3a0801s04tom mitocho 29.6 60 0.0013 27.4 3.2 29 11-39 11-39 (148)
10 COG3462 Predicted membrane pro 25.8 32 0.0007 27.8 0.9 43 161-204 31-73 (117)
11 PF10617 DUF2474: Protein of u 25.8 1.4E+02 0.003 19.9 3.7 25 179-203 8-32 (40)
12 PRK14397 membrane protein; Pro 24.5 2.4E+02 0.0051 25.4 6.2 14 80-93 82-95 (222)
13 KOG4056 Translocase of outer m 24.0 91 0.002 26.3 3.2 30 10-39 12-41 (143)
14 PLN00092 photosystem I reactio 23.8 97 0.0021 25.7 3.3 62 61-132 56-119 (137)
15 PF09301 DUF1970: Domain of un 22.0 1.4E+02 0.0031 23.3 3.8 51 193-243 15-73 (117)
16 PF10658 DUF2484: Protein of u 21.9 2.3E+02 0.005 21.5 4.7 38 163-200 26-66 (77)
17 PF11755 DUF3311: Protein of u 21.3 1.5E+02 0.0032 21.4 3.5 31 172-204 24-54 (66)
No 1
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=100.00 E-value=9.9e-65 Score=445.63 Aligned_cols=199 Identities=35% Similarity=0.597 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCChhhhHHHhHHHhHhc----cCccchHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047237 10 LVLVPLGLLIMFTYHLFLLYRYLHHPHTTAFGFENNDKRAWVEK----KDASVAITVITSNISAATFLSTVSLTLSSLIG 85 (245)
Q Consensus 10 ~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g~~~~~R~~Wm~~----~~~il~vq~Lrn~i~~~tFfASTsill~~gl~ 85 (245)
++++|++++||+|||+|++++.+++| |++|+|+++|++||++ |++|+|+|+|||++|++||||||||++++|++
T Consensus 1 ~~av~~~l~~~~gY~~~l~~~~~~~p--t~~~~~~~~R~~W~~~m~~r~~~ildvq~Lrn~~~~~tffASTailli~g~~ 78 (216)
T PF04654_consen 1 LIAVPLFLLCWVGYHLYLERRVRRRP--TLSGIMNQYRRAWMRQMMDRKNRILDVQTLRNLIMSATFFASTAILLIGGLL 78 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999 9999999999999999 88999999999999999999999999999999
Q ss_pred HHhccCCccccc--ccccccCC-CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCC-C--------hHHH
Q 047237 86 AWLGSSTNNIFE--SELILGDT-RASTISIKYISLLSCFLLAFSCFVQSTRHFVHATYLISMPEDN-V--------PVKY 153 (245)
Q Consensus 86 al~~s~~~~~~~--~~~~~g~~-~~~~~~iKlllll~if~~AFf~F~wS~R~~n~~~~Li~~P~~~-~--------~~~~ 153 (245)
++++++|+ ... ++++++++ ++..||+|++++++||++|||||+||+||||||+||||+||++ + .+++
T Consensus 79 all~~~~~-~~~~~~~~~~~~~~s~~~~~lK~l~ll~~f~~aFf~f~~s~R~~n~~~~li~~~p~~~~~~~~~~~~~~~~ 157 (216)
T PF04654_consen 79 ALLGSTDK-LSSVASDLPFGGSASRFLFELKLLLLLVIFLYAFFKFTWSIRQYNHASFLIGAPPEPPEGDEAEREAFAEY 157 (216)
T ss_pred HHHcCcHH-HhhHHhhCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHH
Confidence 99999997 555 88999988 6678999999999999999999999999999999999966532 1 2489
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCcCCC
Q 047237 154 AEIAIIKGGEFWSLGLRALYFALNLLLWFFGPIPMFLSSIILVIILHYLDTNTTPLHN 211 (245)
Q Consensus 154 ~~~~l~rA~~~fn~GlRa~Yfal~ll~W~~gP~~l~~~sv~vv~vLy~rDf~s~~~~~ 211 (245)
+++++++|+++||.|+|+|||++|+++|++||++++++|+++|++||+|||.|++.|.
T Consensus 158 ~a~~~~~a~~~fn~GlRa~yfal~~l~W~~gP~~~~~~t~~vv~~L~~rdf~S~~~~a 215 (216)
T PF04654_consen 158 AARVLNRAGNFFNRGLRAYYFALPLLLWFFGPWALIAATVLVVAVLYRRDFRSRARHA 215 (216)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchHhhc
Confidence 9999999999999999999999999999999999999999999999999999998774
No 2
>COG3821 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.6e-53 Score=362.24 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=182.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHhhcCCCCChhhhHHHhHHHhHhc----cCccchHHHHhHHHHHHHHHHHHHHHHH
Q 047237 6 EYLDLVLVPLGLLIMFTYHLFLLYRYLHHPHTTAFGFENNDKRAWVEK----KDASVAITVITSNISAATFLSTVSLTLS 81 (245)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g~~~~~R~~Wm~~----~~~il~vq~Lrn~i~~~tFfASTsill~ 81 (245)
..+|++++.+|++||++|..+..++-+.+.+++. .|+.+||+||++ |.+|+|.|+|++++++++|||||+++++
T Consensus 3 ~l~d~lA~~~F~~~W~~yt~~~~~kg~srasL~t--~m~~~R~~Wmr~~l~RdiriiDtqii~glq~gtaFFASstlial 80 (234)
T COG3821 3 TLLDLLALAVFLLCWLLYTPASTRKGFSRASLNT--AMNEIRRRWMRNMLVRDIRIIDTQIIGGLQNGTAFFASSTLIAL 80 (234)
T ss_pred cHHHHHHHHHHHHHHHhhhHHhccCccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccchHHHHhhHHHH
Confidence 4579999999999999999999888888888887 999999999999 8899999999999999999999999999
Q ss_pred HHHHHHhccCCccccc--ccccccCCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc-CCCC-C--Ch----
Q 047237 82 SLIGAWLGSSTNNIFE--SELILGDTRAS-TISIKYISLLSCFLLAFSCFVQSTRHFVHATYLIS-MPED-N--VP---- 150 (245)
Q Consensus 82 ~gl~al~~s~~~~~~~--~~~~~g~~~~~-~~~iKlllll~if~~AFf~F~wS~R~~n~~~~Li~-~P~~-~--~~---- 150 (245)
||.+++++++|+ ... +|+|+...++. .+|+|++++.++|.|+||+|.||+||||||+++|| +|-. + .+
T Consensus 81 gg~falLgatD~-v~~v~~dLp~v~~~sr~afelKv~~l~~~f~ysffkFgWs~RlfNyc~iliGa~PM~~~~~~~~~~a 159 (234)
T COG3821 81 GGCFALLGATDR-VLSVLSDLPFVAKASRTAFELKVGGLTVLFAYSFFKFGWSYRLFNYCSILIGAIPMWADNAVDAEAA 159 (234)
T ss_pred HHHHHHHcCchh-HHHHHcCCchhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccccchHHH
Confidence 999999999998 554 99999988665 79999999999999999999999999999999999 7732 1 11
Q ss_pred H---HHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Q 047237 151 V---KYAEIAIIKGGEFWSLGLRALYFALNLLLWFFGPIPMFLSSIILVIILHYLDTNT 206 (245)
Q Consensus 151 ~---~~~~~~l~rA~~~fn~GlRa~Yfal~ll~W~~gP~~l~~~sv~vv~vLy~rDf~s 206 (245)
+ +.+.+++..|+++||.|+|+|||+++++.||++|++|+++|++++.+|+||||+|
T Consensus 160 e~aaerai~mn~lAak~FN~GlRa~ffsig~lgWfi~p~vFm~~T~~vilvL~rRqf~S 218 (234)
T COG3821 160 ERAAERAIRMNILAAKHFNAGLRAYFFSIGYLGWFISPYVFMLSTLGVILVLLRRQFFS 218 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 4556688999999999999999999999999999999999999999999999997
No 3
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=42.38 E-value=35 Score=26.67 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhcCCCCCh
Q 047237 9 DLVLVPLGLLIMFTYHLFLLYRYLHHPHTTA 39 (245)
Q Consensus 9 D~vav~~~l~~~~gYh~~l~~~~~~~P~~t~ 39 (245)
++.++..++.+|..=|..+.+..|++|...-
T Consensus 42 ~~~a~~~gl~lw~v~h~~l~~mAK~DP~~~~ 72 (94)
T PRK13823 42 TWRAALFGIALWFGALFALRLMAKADPKMRH 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 4556778999999999999999999998755
No 4
>PRK14406 membrane protein; Provisional
Probab=39.09 E-value=64 Score=28.46 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHhCCCcCCCCCccccccchhhhhhhccccc
Q 047237 174 FALNLLLWFFGPIPMFLSSIILVIIL-HYLDTNTTPLHNYSTSESCTDQKVADRIYGKAT 232 (245)
Q Consensus 174 fal~ll~W~~gP~~l~~~sv~vv~vL-y~rDf~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
..+|.+.|++++.......++.+.++ .+||-- ..-.+.+|....+-|-.+|||.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~lii~rHr~NI-----~Rl~~g~E~k~~~~~~~~~~~~ 197 (199)
T PRK14406 143 LAASIFTFFFGKDYWVIFLALTLFSVLRHKENI-----KRLLNGNERKTDVVDYFFGKGK 197 (199)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHcCCCCCCchHHHhhcccc
Confidence 45556666655422222222222333 344422 2333455667778889999985
No 5
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=36.41 E-value=89 Score=23.69 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 047237 172 LYFALNLLLWFFGPIPMFLSSIILVIIL 199 (245)
Q Consensus 172 ~Yfal~ll~W~~gP~~l~~~sv~vv~vL 199 (245)
++....+++|++|+++..++..+++.+.
T Consensus 15 ~~l~~~lvG~~~g~~~~~l~~~l~~~l~ 42 (90)
T PF11808_consen 15 LLLAAALVGWLFGHLWWALLLGLLLYLF 42 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566677889999987655554444443
No 6
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=33.39 E-value=88 Score=19.59 Aligned_cols=20 Identities=10% Similarity=0.428 Sum_probs=12.4
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 047237 178 LLLWFFGPIPMFLSSIILVI 197 (245)
Q Consensus 178 ll~W~~gP~~l~~~sv~vv~ 197 (245)
+++|++|-......+++...
T Consensus 3 YfaWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 3 YFAWILGTLLACAFGVLNAM 22 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46899997655544444443
No 7
>COG1288 Predicted membrane protein [Function unknown]
Probab=31.54 E-value=92 Score=31.08 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=38.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHhhcCCCCChhh-hHHHhHHHhHhc
Q 047237 6 EYLDLVLVPLGLLIMFTYHLFLLYRYLHHPHTTAFG-FENNDKRAWVEK 53 (245)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g-~~~~~R~~Wm~~ 53 (245)
..+-++...++.++-+.|-.|+..|.|++|+.+... ...++|+.|..+
T Consensus 216 ~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~ 264 (481)
T COG1288 216 MGLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVE 264 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhc
Confidence 345678888999999999999999999999997643 345566677666
No 8
>PRK10278 hypothetical protein; Provisional
Probab=31.11 E-value=2e+02 Score=23.67 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH------Hhhhhhhhhh
Q 047237 108 STISIKYISLLSCFLLAFSCF------VQSTRHFVHA 138 (245)
Q Consensus 108 ~~~~iKlllll~if~~AFf~F------~wS~R~~n~~ 138 (245)
.-...|++++++..+.+++.| +...|...+.
T Consensus 73 ~WLt~Kl~~lv~YI~lg~~Al~~k~~~~~~~R~~af~ 109 (130)
T PRK10278 73 QWLTEKLFGVIIYIVLGFIALDYRRMRSQQARFIAFP 109 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 344679999999999988887 4556665444
No 9
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=29.57 E-value=60 Score=27.41 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCCCCh
Q 047237 11 VLVPLGLLIMFTYHLFLLYRYLHHPHTTA 39 (245)
Q Consensus 11 vav~~~l~~~~gYh~~l~~~~~~~P~~t~ 39 (245)
++..++.+.++||-+|..|+.|.+|..-.
T Consensus 11 ~~ag~a~~~flgYciYFD~KRR~dPdFRk 39 (148)
T TIGR00985 11 IAAGIAAAAFLGYAIYFDYKRRNDPDFRK 39 (148)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHH
Confidence 44455678899999999999999998755
No 10
>COG3462 Predicted membrane protein [Function unknown]
Probab=25.81 E-value=32 Score=27.82 Aligned_cols=43 Identities=28% Similarity=0.520 Sum_probs=27.7
Q ss_pred HHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 047237 161 GGEFWSLGLRALYFALNLLLWFFGPIPMFLSSIILVIILHYLDT 204 (245)
Q Consensus 161 A~~~fn~GlRa~Yfal~ll~W~~gP~~l~~~sv~vv~vLy~rDf 204 (245)
++.+|+.|.|+.-=. -+-.|++-|+.-+++-+.++..+|+.--
T Consensus 31 gg~~y~~gy~gm~GG-~yGm~lImpI~~~vvli~lvvfm~~~~g 73 (117)
T COG3462 31 GGAFYPGGYRGMMGG-LYGMWLIMPIFWAVVLIFLVVFMFYILG 73 (117)
T ss_pred cCcccCCCccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677766433221 2246899999888888777777766543
No 11
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=25.75 E-value=1.4e+02 Score=19.86 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 047237 179 LLWFFGPIPMFLSSIILVIILHYLD 203 (245)
Q Consensus 179 l~W~~gP~~l~~~sv~vv~vLy~rD 203 (245)
++||++-|..-+.++.+|..+.|.=
T Consensus 8 l~W~v~iW~~SV~aL~~va~~~Rll 32 (40)
T PF10617_consen 8 LGWFVLIWAASVLALGVVAMLFRLL 32 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998887753
No 12
>PRK14397 membrane protein; Provisional
Probab=24.53 E-value=2.4e+02 Score=25.43 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=10.1
Q ss_pred HHHHHHHHhccCCc
Q 047237 80 LSSLIGAWLGSSTN 93 (245)
Q Consensus 80 l~~gl~al~~s~~~ 93 (245)
...++.+.+|-..+
T Consensus 82 ~~~glaavlGH~fP 95 (222)
T PRK14397 82 SLTALAALLGHLYS 95 (222)
T ss_pred HHHHHHHHHcccch
Confidence 45577788888775
No 13
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.00 E-value=91 Score=26.27 Aligned_cols=30 Identities=10% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCCh
Q 047237 10 LVLVPLGLLIMFTYHLFLLYRYLHHPHTTA 39 (245)
Q Consensus 10 ~vav~~~l~~~~gYh~~l~~~~~~~P~~t~ 39 (245)
.++-.++.+.++||-+|..++.|.+|+.--
T Consensus 12 vI~agiag~af~gYciYFd~KRrsdP~fk~ 41 (143)
T KOG4056|consen 12 VIAAGIAGLAFIGYCIYFDKKRRSDPDFKK 41 (143)
T ss_pred HHHHHHHHHHHHHHHhhcccccccChhHHH
Confidence 345567778899999999999999999866
No 14
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=23.80 E-value=97 Score=25.71 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc--ccccccCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 047237 61 TVITSNISAATFLSTVSLTLSSLIGAWLGSSTNNIFE--SELILGDTRASTISIKYISLLSCFLLAFSCFVQST 132 (245)
Q Consensus 61 q~Lrn~i~~~tFfASTsill~~gl~al~~s~~~~~~~--~~~~~g~~~~~~~~iKlllll~if~~AFf~F~wS~ 132 (245)
..-.|.-|+++.+|..+........++.--+|+ +.. ..+|+|-.++.+ ...++.-|..+|++
T Consensus 56 ~~~~~~g~~asl~Aaa~a~a~~a~PA~AlVDeR-lsteGTGlplGlsn~~L---------gwIL~gVf~lIWsl 119 (137)
T PLN00092 56 DKSSNMGMGASLMAAACAVAMSASPAMALVDER-MSTEGTGLPFGLSNNLL---------GWILLGVFGLIWSL 119 (137)
T ss_pred ccccccchhHHHHHHHHHHHhhcCcHHHHHHHh-hcCCCccccccccCcch---------hhHHHhHHHHHHHH
Confidence 445566899999999887776656666555554 333 568998877632 33334555667776
No 15
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=22.03 E-value=1.4e+02 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhCC--CcCCCCCccccccchhhhhhh----ccc--cccccCCCCcCCC
Q 047237 193 IILVIILHYLDTNT--TPLHNYSTSESCTDQKVADRI----YGK--ATFIDHNNNRGCG 243 (245)
Q Consensus 193 v~vv~vLy~rDf~s--~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~ 243 (245)
++++..||+|.... .+..++.-.--.+.+..+|+| +|- -.-.-.|.||.||
T Consensus 15 vliliwlwfrnrpaaqvasnwegppymtynqpqagsvtlpvagytspsptlpnrnrscg 73 (117)
T PF09301_consen 15 VLILIWLWFRNRPAAQVASNWEGPPYMTYNQPQAGSVTLPVAGYTSPSPTLPNRNRSCG 73 (117)
T ss_dssp HHHHHHHHHHHTT-S-SS-TT----TT-SS---S-S---S-------------------
T ss_pred hhHHHHHHHccChHHHHhhcCCCCCcccccCCCCcceeeeeccccCCCCCCCCCCCCCC
Confidence 44556777777642 122222222223566666664 222 1122245667676
No 16
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=21.93 E-value=2.3e+02 Score=21.47 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=29.4
Q ss_pred hHhhhHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHH
Q 047237 163 EFWSLGLRALYFALNLLLWF---FGPIPMFLSSIILVIILH 200 (245)
Q Consensus 163 ~~fn~GlRa~Yfal~ll~W~---~gP~~l~~~sv~vv~vLy 200 (245)
++|..|.=-.-.++|++.|. .||+.-+++-...+-+|.
T Consensus 26 ~hw~~a~~Lia~g~pLlg~v~~~~Gp~~gl~~L~ag~S~lR 66 (77)
T PF10658_consen 26 NHWRPAYVLIAAGIPLLGWVTYQNGPWWGLLVLAAGMSMLR 66 (77)
T ss_pred hcchhHHHHHHHHhhHhhhhHhhhChHHHHHHHHHHHHHHH
Confidence 56666777778899999987 799998887777666654
No 17
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=21.31 E-value=1.5e+02 Score=21.42 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 047237 172 LYFALNLLLWFFGPIPMFLSSIILVIILHYLDT 204 (245)
Q Consensus 172 ~Yfal~ll~W~~gP~~l~~~sv~vv~vLy~rDf 204 (245)
+-+++|.+.|..--+ +..|.+...+.|++|.
T Consensus 24 ~v~G~Pff~~w~~~w--v~lts~~~~~~y~l~~ 54 (66)
T PF11755_consen 24 TVFGMPFFYWWQLAW--VVLTSVCMAIVYRLDE 54 (66)
T ss_pred cccCcHHHHHHHHHH--HHHHHHHHHHHHHhcc
Confidence 346788887775433 4455666677788844
Done!