Query 047237
Match_columns 245
No_of_seqs 105 out of 286
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 35.3 50 0.0017 22.3 4.1 17 193-209 27-43 (54)
2 2l8s_A Integrin alpha-1; trans 27.2 56 0.0019 22.1 3.2 15 193-207 24-38 (54)
3 1w8x_P Protein P16, protein S, 25.4 91 0.0031 23.3 4.3 51 193-243 15-73 (117)
4 2k1a_A Integrin alpha-IIB; sin 11.7 2E+02 0.0067 18.3 2.9 15 193-207 25-39 (42)
5 1waz_A MERF; protein structure 10.7 47 0.0016 21.8 -0.3 25 5-30 17-41 (46)
6 1qtx_B Protein (RS20); calmodu 9.7 79 0.0027 18.3 0.4 19 47-65 1-19 (26)
7 2h3o_A MERF; membrane protein, 8.2 57 0.002 22.6 -0.7 29 6-35 30-58 (61)
8 1vk9_A Conserved hypothetical 8.1 56 0.0019 26.6 -1.0 16 218-233 61-76 (151)
9 2k1k_A Ephrin type-A receptor 7.5 2.7E+02 0.0091 17.1 2.3 20 183-202 18-37 (38)
10 2o5g_B CAM, smooth muscle myos 7.3 1.2E+02 0.0041 17.5 0.5 21 46-66 2-22 (26)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.35 E-value=50 Score=22.31 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCCcC
Q 047237 193 IILVIILHYLDTNTTPL 209 (245)
Q Consensus 193 v~vv~vLy~rDf~s~~~ 209 (245)
.+++.+||+..|+.+..
T Consensus 27 ~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 27 TILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHcCcccCCC
Confidence 46788999999984443
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.21 E-value=56 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhCCC
Q 047237 193 IILVIILHYLDTNTT 207 (245)
Q Consensus 193 v~vv~vLy~rDf~s~ 207 (245)
.+++++||+..|+.+
T Consensus 24 ~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 24 MLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCcccC
Confidence 467889999999933
No 3
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=25.40 E-value=91 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCC--CcCCCCCccccccchhhhhhh----ccc--cccccCCCCcCCC
Q 047237 193 IILVIILHYLDTNT--TPLHNYSTSESCTDQKVADRI----YGK--ATFIDHNNNRGCG 243 (245)
Q Consensus 193 v~vv~vLy~rDf~s--~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~ 243 (245)
++++..||+|.... .+..++.-.--.+.+..+|+| +|- -.-.-.|.||.||
T Consensus 15 vliliwlwfrnrpaaqvasnwegppymtynqpqagsvtlpvagytspsptlpnrnrscg 73 (117)
T 1w8x_P 15 VLILIWLWFRNRPAAQVASNWEGPPYMTYNQPQAGSVTLPVAGYTSPSPTLPNRNRSCG 73 (117)
T ss_dssp HHHHHHHHHHHTTCSCSSCTTCCCCTTCSSCCCSCSCCCSCC-----------------
T ss_pred hhHHHHHHHccChHHHHhhcCCCCCcccccCCCCcceeeeecccCCCCCCCCCCCCCCC
Confidence 44566778777642 222233322224566666654 221 1122245667676
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=11.73 E-value=2e+02 Score=18.28 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhCCC
Q 047237 193 IILVIILHYLDTNTT 207 (245)
Q Consensus 193 v~vv~vLy~rDf~s~ 207 (245)
.+++.+||+..|+.+
T Consensus 25 ~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 25 TILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHcCcccC
Confidence 357788999998843
No 5
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=10.69 E-value=47 Score=21.79 Aligned_cols=25 Identities=36% Similarity=0.692 Sum_probs=14.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhH
Q 047237 5 KEYLDLVLVPLGLLIMFTYHLFLLYR 30 (245)
Q Consensus 5 ~~~lD~vav~~~l~~~~gYh~~l~~~ 30 (245)
-.++|++++|. ++++++-.+|-.++
T Consensus 17 vgyLDyVLlPa-La~Fi~lt~ya~~r 41 (46)
T 1waz_A 17 TGYLDYVLLPA-LAIFIGLTIYAIQR 41 (46)
T ss_dssp CSCCCCCSCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35788888875 33444444444444
No 6
>1qtx_B Protein (RS20); calmodulin, calcium binding, helix-loop-helix, signaling, complex (calcium- binding protein/peptide), signaling protein; 1.65A {Escherichia coli} PDB: 1qs7_B* 1vrk_B*
Probab=9.68 E-value=79 Score=18.27 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=11.6
Q ss_pred HHHhHhccCccchHHHHhH
Q 047237 47 KRAWVEKKDASVAITVITS 65 (245)
Q Consensus 47 R~~Wm~~~~~il~vq~Lrn 65 (245)
|+.|-+..+.|.+.+-+.+
T Consensus 1 rrkWqKtgnav~Al~Rm~~ 19 (26)
T 1qtx_B 1 RRKWQKTGHAVRAIGRLSS 19 (26)
T ss_pred CchHHHHhHHHHHHHHHHH
Confidence 5677666666666655443
No 7
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=8.20 E-value=57 Score=22.64 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=16.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 047237 6 EYLDLVLVPLGLLIMFTYHLFLLYRYLHHP 35 (245)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~~~~~P 35 (245)
.++|++++|. +..+++..+|-.+|.+++.
T Consensus 30 ~wLd~vl~P~-l~~figl~~Y~~~r~~~~~ 58 (61)
T 2h3o_A 30 GYLDYVLLPA-LAIFIGLTIYAIQRKRQAD 58 (61)
T ss_dssp HHSSSSCCTT-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhhhhc
Confidence 3567666654 2333366777666666554
No 8
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=8.08 E-value=56 Score=26.58 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.5
Q ss_pred ccchhhhhhhcccccc
Q 047237 218 CTDQKVADRIYGKATF 233 (245)
Q Consensus 218 ~~~~~~~~~~~~~~~~ 233 (245)
-.+...||+|-|||++
T Consensus 61 L~ga~vADKVVGKAAA 76 (151)
T 1vk9_A 61 LEGSLVIDKMVGKAAA 76 (151)
T ss_dssp CTTCEEEEEEECHHHH
T ss_pred ccCCEehHHHHhHHHH
Confidence 3567899999999986
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=7.49 E-value=2.7e+02 Score=17.12 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=9.7
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 047237 183 FGPIPMFLSSIILVIILHYL 202 (245)
Q Consensus 183 ~gP~~l~~~sv~vv~vLy~r 202 (245)
+|++..++..+++++.+|||
T Consensus 18 vG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHeec
Confidence 45555444444444455543
No 10
>2o5g_B CAM, smooth muscle myosin light chain kinase peptide; protein-peptide complex, metal binding protein; 1.08A {Gallus gallus}
Probab=7.26 E-value=1.2e+02 Score=17.49 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=14.9
Q ss_pred hHHHhHhccCccchHHHHhHH
Q 047237 46 DKRAWVEKKDASVAITVITSN 66 (245)
Q Consensus 46 ~R~~Wm~~~~~il~vq~Lrn~ 66 (245)
.|+.|-+..|.|.+.+-+.++
T Consensus 2 ~rrkWqKtgnAv~Al~Rma~m 22 (26)
T 2o5g_B 2 ARRKWQKTGHAVRAIGRLSXX 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 488888777777777665544
Done!