Query 047237
Match_columns 245
No_of_seqs 105 out of 286
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 15:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047237.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047237hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bs2a1 a.7.3.1 (A:458-655) Fu 23.8 13 0.00091 29.5 1.3 18 220-237 132-150 (198)
2 d1jb0i_ f.23.17.1 (I:) Subunit 18.2 21 0.0015 20.9 1.1 23 177-199 8-30 (38)
3 d1vk9a_ c.97.1.3 (A:) Hypothet 7.7 28 0.002 26.4 -1.0 15 219-233 61-75 (147)
4 d1y5ic1 f.21.3.1 (C:1-225) Res 5.3 3.2E+02 0.023 20.5 4.3 23 183-205 9-31 (225)
5 d1v3va1 b.35.1.2 (A:1-112,A:29 4.7 80 0.0058 22.8 0.1 20 218-237 76-95 (147)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 4.6 3.2E+02 0.023 15.1 3.4 16 180-195 4-19 (34)
7 d1riqa1 a.203.1.1 (A:237-457) 3.5 3.3E+02 0.024 20.8 3.0 33 138-170 40-76 (221)
8 d2jmfa1 b.72.1.1 (A:521-553) U 3.2 1.7E+02 0.012 16.0 0.7 12 229-240 15-26 (33)
9 d1a17a_ a.118.8.1 (A:) Protein 3.0 2.5E+02 0.018 18.8 1.7 17 152-168 8-24 (159)
10 d2a5yb1 a.4.5.80 (B:386-543) C 2.9 1.5E+02 0.011 21.3 0.3 13 55-67 80-92 (158)
No 1
>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=23.80 E-value=13 Score=29.55 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.6
Q ss_pred chhhhhhhcc-ccccccCC
Q 047237 220 DQKVADRIYG-KATFIDHN 237 (245)
Q Consensus 220 ~~~~~~~~~~-~~~~~~~~ 237 (245)
++.|+.|.|| ||.+|-|.
T Consensus 132 ~~~P~~R~Yg~~~~~i~~~ 150 (198)
T d2bs2a1 132 EIAPGYRGYGAKGNYIENP 150 (198)
T ss_dssp SSCSCCCSSSCTTCEECCH
T ss_pred ecCCcCcccCCCCCcccCC
Confidence 4569999999 58888874
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=18.19 E-value=21 Score=20.87 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=13.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 047237 177 NLLLWFFGPIPMFLSSIILVIIL 199 (245)
Q Consensus 177 ~ll~W~~gP~~l~~~sv~vv~vL 199 (245)
.+|-|++-|+.-.+.-+++..+|
T Consensus 8 syLPwI~iPvv~wl~p~vvMglL 30 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMPTVVMGLL 30 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHH
Confidence 45667777776555555554444
No 3
>d1vk9a_ c.97.1.3 (A:) Hypothetical protein TM1506 {Thermotoga maritima [TaxId: 2336]}
Probab=7.66 E-value=28 Score=26.35 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred cchhhhhhhcccccc
Q 047237 219 TDQKVADRIYGKATF 233 (245)
Q Consensus 219 ~~~~~~~~~~~~~~~ 233 (245)
.|...||+|-|||++
T Consensus 61 ~ga~iaDKVVGKAAA 75 (147)
T d1vk9a_ 61 EGSLVIDKMVGKAAA 75 (147)
T ss_dssp TTCEEEEEEECHHHH
T ss_pred cCCchHHHHHhHHHH
Confidence 567889999999986
No 4
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=3.2e+02 Score=20.50 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=16.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhC
Q 047237 183 FGPIPMFLSSIILVIILHYLDTN 205 (245)
Q Consensus 183 ~gP~~l~~~sv~vv~vLy~rDf~ 205 (245)
++..|.++.++.+....||-+..
T Consensus 9 f~i~pyial~vf~~G~~~R~~~~ 31 (225)
T d1y5ic1 9 FDIYPYIAGAVFLIGSWLRYDYG 31 (225)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhHHHHhhc
Confidence 44555678888888888777663
No 5
>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}
Probab=4.66 E-value=80 Score=22.82 Aligned_cols=20 Identities=5% Similarity=0.101 Sum_probs=17.8
Q ss_pred ccchhhhhhhccccccccCC
Q 047237 218 CTDQKVADRIYGKATFIDHN 237 (245)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~ 237 (245)
.++.++||+|.|-+..|+|.
T Consensus 76 ~~~f~~GD~V~g~~gw~ey~ 95 (147)
T d1v3va1 76 NSAFPAGSIVLAQSGWTTHF 95 (147)
T ss_dssp CTTSCTTCEEEECCCSBSEE
T ss_pred CCcccCCCEEEEccCCEeEE
Confidence 58999999999999888875
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.60 E-value=3.2e+02 Score=15.11 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=10.3
Q ss_pred HHHHhhHHHHHHHHHH
Q 047237 180 LWFFGPIPMFLSSIIL 195 (245)
Q Consensus 180 ~W~~gP~~l~~~sv~v 195 (245)
+|+++.+.-++.-.++
T Consensus 4 LWlv~tv~G~~vi~~v 19 (34)
T d2axtj1 4 LWIVATVAGMGVIVIV 19 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeeehhhhhhHhhe
Confidence 5888887766544333
No 7
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=3.47 E-value=3.3e+02 Score=20.84 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=21.4
Q ss_pred hhhhcc--CCCCCChHHHHHH-HHHHHHhH-hhhHHH
Q 047237 138 ATYLIS--MPEDNVPVKYAEI-AIIKGGEF-WSLGLR 170 (245)
Q Consensus 138 ~~~Li~--~P~~~~~~~~~~~-~l~rA~~~-fn~GlR 170 (245)
++|+|+ +-|......|+.| ++.||.++ +.+|+.
T Consensus 40 ~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~lg~~ 76 (221)
T d1riqa1 40 ITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIE 76 (221)
T ss_dssp HHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCCCcCCCchHHHHHHHHHHHHHHHhccc
Confidence 577887 4334466788876 88888765 445543
No 8
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.24 E-value=1.7e+02 Score=16.02 Aligned_cols=12 Identities=50% Similarity=0.974 Sum_probs=8.6
Q ss_pred cccccccCCCCc
Q 047237 229 GKATFIDHNNNR 240 (245)
Q Consensus 229 ~~~~~~~~~~~~ 240 (245)
|+=-++||++..
T Consensus 15 G~~Yyinh~t~~ 26 (33)
T d2jmfa1 15 GERFFVDHNTRR 26 (33)
T ss_dssp SCEEEEETTTCC
T ss_pred CCEEEEECCCCc
Confidence 444589999865
No 9
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.05 E-value=2.5e+02 Score=18.81 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHhhhH
Q 047237 152 KYAEIAIIKGGEFWSLG 168 (245)
Q Consensus 152 ~~~~~~l~rA~~~fn~G 168 (245)
+.+.++..+|..+|..|
T Consensus 8 ~~a~~l~~~gn~~~~~~ 24 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAK 24 (159)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 55555666666665544
No 10
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.89 E-value=1.5e+02 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.5
Q ss_pred CccchHHHHhHHH
Q 047237 55 DASVAITVITSNI 67 (245)
Q Consensus 55 ~~il~vq~Lrn~i 67 (245)
+.++|+||+.|.+
T Consensus 80 khvvd~qtiangi 92 (158)
T d2a5yb1 80 KHVVDAQTIANGI 92 (158)
T ss_dssp HTTSCTHHHHHHH
T ss_pred HHHhhHHHHhhhH
Confidence 5678999998865
Done!