BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047238
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/407 (20%), Positives = 142/407 (34%), Gaps = 60/407 (14%)
Query: 88 LPMAK--QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDP-RAS 144
+P+ K L Y +N TP+ ++L+ D +W C + + + P R
Sbjct: 11 VPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQ-----NYVSSTYRPVRCR 65
Query: 145 TT----YSEIPCDDPLCRSPFKCQNGKC-VYTRRYHVGDVTRGLASRETFAFPVRNG--- 196
T+ I C D C N C V+ + T G + + + +G
Sbjct: 66 TSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSS 125
Query: 197 --FTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRN--RIQGLFSYCLVRE 252
VPR F C+ + + G+ G + ++L SQ + + F+ CL
Sbjct: 126 GRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGS 185
Query: 253 MEATSVIKFGRD-------ADVRRRDLETTPILLSDLRP-----------HFYLHLLEIS 294
+ SVI FG D V + L TP+L + + +++ + I
Sbjct: 186 TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIK 245
Query: 295 IGRHIVRFPPGAFDIMRXXXXXXXXXXXXPVTFIRNGPYQTLMQRYDQILRSLGRQRIPY 354
I IV I P T + Y+ + + + I S R
Sbjct: 246 INSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF--IKESAARNITRV 303
Query: 355 NASQEFDYCYRYDSSFK-----AYPSMTFHLQEADY---IVQPENMYFIEPDRGRFCVAI 406
+ F C+ D+ + PS+ LQ I +M +I + C+ +
Sbjct: 304 ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN--VVCLGV 361
Query: 407 QD---DPKYSI-LGAWQQQNMLIIYDLNVPALRFGS------ENCAN 443
D + + SI +G Q ++ L+ +DL + F CAN
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN 408
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/407 (20%), Positives = 142/407 (34%), Gaps = 60/407 (14%)
Query: 88 LPMAK--QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDP-RAS 144
+P+ K L Y +N TP+ ++L+ D +W C + + + P R
Sbjct: 11 VPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQ-----NYVSSTYRPVRCR 65
Query: 145 TT----YSEIPCDDPLCRSPFKCQNGKC-VYTRRYHVGDVTRGLASRETFAFPVRNG--- 196
T+ I C D C N C V+ + T G + + + +G
Sbjct: 66 TSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSS 125
Query: 197 --FTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRN--RIQGLFSYCLVRE 252
VPR F C+ + + G+ G + ++L SQ + + F+ CL
Sbjct: 126 GRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGS 185
Query: 253 MEATSVIKFGRD-------ADVRRRDLETTPILLSDLRP-----------HFYLHLLEIS 294
+ SVI FG D V + L TP+L + + +++ + I
Sbjct: 186 TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIK 245
Query: 295 IGRHIVRFPPGAFDIMRXXXXXXXXXXXXPVTFIRNGPYQTLMQRYDQILRSLGRQRIPY 354
I IV I P T + Y+ + + + I S R
Sbjct: 246 INSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF--IKESAARNITRV 303
Query: 355 NASQEFDYCYRYDSSFK-----AYPSMTFHLQEADY---IVQPENMYFIEPDRGRFCVAI 406
+ F C+ D+ + PS+ LQ I +M +I + C+ +
Sbjct: 304 ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN--VVCLGV 361
Query: 407 QD---DPKYSI-LGAWQQQNMLIIYDLNVPALRFGS------ENCAN 443
D + + SI +G Q ++ L+ +DL + F CAN
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN 408
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 88 LPMAK--QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRAST 145
+PM D+ Y +V IGTP K +L FDT SS +W C C + T +DP S+
Sbjct: 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSS 64
Query: 146 TY 147
TY
Sbjct: 65 TY 66
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 88 LPMAK--QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRAST 145
+PM D+ Y +V IGTP K +L FDT SS +W C C T +DP S+
Sbjct: 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK-YDPNQSS 64
Query: 146 TY 147
TY
Sbjct: 65 TY 66
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 335 TLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYF 394
TL+ + I S+ R Y AS D Y A+ + F + A + V P+++ F
Sbjct: 222 TLLILPNNIAASVAR---AYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVF 278
Query: 395 IEPDRGRFCVA--IQDDPKYSILGAWQQQNMLIIYDLNVPALRF 436
E +G+ C+A + ++I+G +N ++++ VP ++
Sbjct: 279 -EEFQGQ-CIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQI 320
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 89 PMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPI---FDPRAST 145
PMA D Y E++IGTP + +LFDT SS +W P + C Q F+P S+
Sbjct: 6 PMAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWV---PSVYCQSQACTSHSRFNPSESS 62
Query: 146 TYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAF 205
TYS NG+ ++ +Y G +T G +T VP F
Sbjct: 63 TYST---------------NGQ-TFSLQYGSGSLT-GFFGYDTLTVQSIQ----VPNQEF 101
Query: 206 GCSNDNSGFAFG-GKISGILGFNASPLSLSSQLRNRIQGL 244
G S + G F + GI+G LS+ + +QG+
Sbjct: 102 GLSENEPGTNFVYAQFDGIMGLAYPALSV-DEATTAMQGM 140
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 97 YSVEVNIGTPMKPQHLLFDTASSLVWT---QCQPCIRCFDQTTPIFDPRASTTYSE 149
Y++ V+IGTP + +LLFDT SS W C C + FDP +S+T+ E
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKE 73
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIR---CFDQTTPIFDPRASTTY 147
Y++ V+IGTP + LLFDT SS W + C + C + FDP AS+T+
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVG--SRFFDPSASSTF 71
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTYSEIPCDD 154
Y ++ +GTP + ++ DT SS +W C + CF + +D AS++Y
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK------ 66
Query: 155 PLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGF 214
NG + +Y G + G S++T + G +P+ F + G
Sbjct: 67 ---------ANG-TEFAIQYGTGSL-EGYISQDTLSI----GDLTIPKQDFAEATSEPGL 111
Query: 215 AFG-GKISGILGFNASPLSL 233
F GK GILG +S+
Sbjct: 112 TFAFGKFDGILGLGYDTISV 131
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTYSEIPCDD 154
Y ++ +GTP + ++ DT SS +W C + CF + +D AS++Y
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK------ 66
Query: 155 PLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGF 214
NG + +Y G + G S++T + G +P+ F + G
Sbjct: 67 ---------ANG-TEFAIQYGTGSL-EGYISQDTLSI----GDLTIPKQDFAEATSEPGL 111
Query: 215 AFG-GKISGILGFNASPLSL 233
F GK GILG +S+
Sbjct: 112 TFAFGKFDGILGLGYDTISV 131
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTYSEIPCDD 154
Y ++ +GTP + ++ DT SS +W C + CF + +D AS++Y
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK------ 66
Query: 155 PLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGF 214
NG + +Y G + G S++T + G +P+ F + G
Sbjct: 67 ---------ANG-TEFAIQYGTGSL-EGYISQDTLSI----GDLTIPKQDFAEATSEPGL 111
Query: 215 AFG-GKISGILGFNASPLSL 233
F GK GILG +S+
Sbjct: 112 TFAFGKFDGILGLGYDTISV 131
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 10 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 65
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 14 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 69
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 13 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 68
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 17 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 17 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 17 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 115
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTT--PIFDPRASTTY 147
D Y E+ IGTP + ++FDT SS VW C R + +FD S++Y
Sbjct: 17 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSY 72
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIR---CFDQTTPIFDPRASTTYSE 149
+D Y E+ IGTP + ++FDT SS++W CI C + +++ S+TY E
Sbjct: 11 RDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKAC--RAHSMYESSDSSTYKE 68
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 117/329 (35%), Gaps = 65/329 (19%)
Query: 81 QELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFD 140
E + I L +FY E IGT +P +FDT S+ +W C T ++D
Sbjct: 1 SENDSIELDDVANLMFYG-EGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYD 59
Query: 141 PRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFV 200
AS +Y ++G V Y G V RG S++ + G +
Sbjct: 60 ASASKSYE---------------KDGTKV-EISYGSGTV-RGYFSKDVISL----GDLSL 98
Query: 201 PR--LAFGCSNDNSGFAFGGKISGILGFNASPLSLSS--------QLRNRI-QGLFSYCL 249
P + ++D G + GILG LS+ S + +N+I LF++ L
Sbjct: 99 PYKFIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYL 158
Query: 250 VREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHL-LEISIGRHIVRFPPGAFD 308
+ + G D P+ L Y + L+I G+++++ D
Sbjct: 159 PVHDKHVGYLTIGG----IESDFYEGPLTYEKLNHDLYWQIDLDIHFGKYVMQKANAVVD 214
Query: 309 IMRXXXXXXXXXXXXPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDS 368
P +F+ + R + ++P+ Y
Sbjct: 215 -------SGTSTITAPTSFLN------------KFFRDMNVIKVPFLP------LYVTTC 249
Query: 369 SFKAYPSMTFHLQEADYIVQPENMYFIEP 397
P++ FH + Y ++PE ++++P
Sbjct: 250 DNDDLPTLEFHSRNNKYTLEPE--FYMDP 276
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 92 KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
+ D Y ++IGTP + ++FDT SS +W C F PR S+TY E
Sbjct: 9 EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVE 66
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 53 QSERIHKMFEISKARANYMAS-MSKPNAFQELED-IHLPMAKQDLFYSVEVNIGTPMKPQ 110
++ + HK+ K N++ S ++K N D I L + +FY + +G +P
Sbjct: 22 KTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYG-DAEVGDNQQPF 80
Query: 111 HLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
+ DT S+ +W C T ++D S TY +
Sbjct: 81 TFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 119
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 53 QSERIHKMFEISKARANYMAS-MSKPNAFQELED-IHLPMAKQDLFYSVEVNIGTPMKPQ 110
++ + HK+ K N++ S ++K N D I L + +FY + +G +P
Sbjct: 95 KTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYG-DAEVGDNQQPF 153
Query: 111 HLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
+ DT S+ +W C T ++D S TY +
Sbjct: 154 TFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 192
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
D+ Y ++IG+P + ++FDT SS +W C +T F P S+TYS+
Sbjct: 22 DMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ 77
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 36/199 (18%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTYSEIP 151
D+ Y + IGTP + ++FDT SS +W C + C + F+P S+TY
Sbjct: 11 DMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPEDSSTY---- 64
Query: 152 CDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDN 211
Q+ + Y G +T G+ +T V+ G FG S
Sbjct: 65 ------------QSTSETVSITYGTGSMT-GILGYDT----VQVGGISDTNQIFGLSETE 107
Query: 212 SG-FAFGGKISGILGFNASPLSLSS------QLRNR---IQGLFSYCLVREMEATSVIKF 261
G F + GILG +S S + N+ Q LFS L + ++ SV+ F
Sbjct: 108 PGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIF 167
Query: 262 GR-DADVRRRDLETTPILL 279
G D+ L P+ +
Sbjct: 168 GGIDSSYYTGSLNWVPVTV 186
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 36/199 (18%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTYSEIP 151
D+ Y + IGTP + ++FDT SS +W C + C + F+P S+TY
Sbjct: 11 DMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPEDSSTY---- 64
Query: 152 CDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDN 211
Q+ + Y G +T G+ +T V+ G FG S
Sbjct: 65 ------------QSTSETVSITYGTGSMT-GILGYDT----VQVGGISDTNQIFGLSETE 107
Query: 212 SG-FAFGGKISGILGFNASPLSLSS------QLRNR---IQGLFSYCLVREMEATSVIKF 261
G F + GILG +S S + N+ Q LFS L + ++ SV+ F
Sbjct: 108 PGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIF 167
Query: 262 GR-DADVRRRDLETTPILL 279
G D+ L P+ +
Sbjct: 168 GGIDSSYYTGSLNWVPVTV 186
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 34/92 (36%)
Query: 89 PMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYS 148
P+ D Y V IGTP + +L FDT SS +W I+ P STT
Sbjct: 9 PIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAK 68
Query: 149 EIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVT 180
+ + VYT VG +T
Sbjct: 69 LLSGATWSISYGDGSSSSGDVYTDTVSVGGLT 100
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 34/92 (36%)
Query: 89 PMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYS 148
P+ D Y V IGTP + +L FDT SS +W I+ P STT
Sbjct: 9 PIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAK 68
Query: 149 EIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVT 180
+ + VYT VG +T
Sbjct: 69 LLSGATWSISYGDGSSSSGDVYTDTVSVGGLT 100
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 89 PMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWT-QCQPCIRCFDQTTPIFDPRASTTY 147
P+ D Y V IGTP + +L FDT SS +W + QT I+ P STT
Sbjct: 9 PIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQT--IYTPSKSTTA 66
Query: 148 SEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVT 180
+ + VYT VG +T
Sbjct: 67 KLLSGATWSISYGDGSSSSGDVYTDTVSVGGLT 99
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEI 150
D Y ++ IGTP + ++FDT SS +W C + FDPR S+T+ +
Sbjct: 10 DSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 89 PMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWT-QCQPCIRCFDQTTPIFDPRASTTY 147
P+ D Y V IGTP + +L FDT SS +W + QT I+ P STT
Sbjct: 9 PIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQT--IYTPSKSTTA 66
Query: 148 SEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVT 180
+ + VYT VG +T
Sbjct: 67 KLLSGATWSISYGDGSSSSGDVYTDTVSVGGLT 99
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 63 ISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVW 122
+S + S + P +E DI + Y E+ +GTP + ++FDT SS +W
Sbjct: 20 LSGGEEQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLW 79
Query: 123 TQCQPC---IRCFDQTTPIFDPRASTTYSE 149
C I C+ + + AS+TY +
Sbjct: 80 VPSAKCYFSIACYLHSR--YKAGASSTYKK 107
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 87 HLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVW 122
+P Q + Y V V +G+P LL DT SS W
Sbjct: 4 SVPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTW 39
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCF 132
Y E+ IGTP + ++FDT S+ +W C R +
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLY 52
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEI 150
D Y ++ +GTP + +LFDT SS W C + FDPR S+T+ +
Sbjct: 13 DSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEI 150
D Y ++ +GTP + +LFDT SS W C + FDPR S+T+ +
Sbjct: 13 DSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 11 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 11 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 11 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 11 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC--IRCFDQTTPIFDPRASTTY 147
D Y + IGTP + ++FDT SS +W C + C D F+P S+T+
Sbjct: 11 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRC 131
D Y E+ IGTP + ++FDT SS +W P I C
Sbjct: 12 DAQYYGEIGIGTPPQCFTVVFDTGSSNLWV---PSIHC 46
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
++ Y E IG + +FDT S+ +W C +T ++D S TY +
Sbjct: 20 NVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEK 75
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 89 PMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVW 122
P D Y V+IGTP + L FDT SS +W
Sbjct: 9 PSDSADSEYITSVSIGTPAQVLPLDFDTGSSDLW 42
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 122 WTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPL------------------CRSPFKC 163
W+ C PCI + + P + + PC PL C++ F+C
Sbjct: 69 WSDCDPCIEKQSKVRSVLRP---SQFGGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRC 125
Query: 164 QNGKCVYTRRYHVGDVTRGLASRE 187
+G+C+ + G+ G S E
Sbjct: 126 DSGRCIARKLECNGENDCGDNSDE 149
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
Q++ + + +G +P + DT S+ +W C T ++D S TY +
Sbjct: 14 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 70
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
Q++ + + +G +P + DT S+ +W C T ++D S TY +
Sbjct: 14 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 70
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
Q++ + + +G +P + DT S+ +W C T ++D S TY +
Sbjct: 12 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 68
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSE 149
Q++ + + +G +P + DT S+ +W C T ++D S TY +
Sbjct: 12 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,894,698
Number of Sequences: 62578
Number of extensions: 513155
Number of successful extensions: 1381
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 54
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)