Query 047238
Match_columns 446
No_of_seqs 293 out of 1734
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7.9E-74 1.7E-78 577.1 45.9 404 26-443 19-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 7.1E-59 1.5E-63 470.6 35.4 310 85-444 108-451 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 1.4E-57 3E-62 444.6 30.4 301 88-438 1-317 (317)
4 KOG1339 Aspartyl protease [Pos 100.0 6.7E-57 1.5E-61 451.7 35.3 341 88-442 37-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 6.4E-57 1.4E-61 441.6 31.5 298 93-438 3-325 (325)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.2E-56 4.8E-61 437.5 30.7 300 95-442 2-326 (326)
7 cd05486 Cathespin_E Cathepsin 100.0 1.4E-56 3.1E-61 437.3 28.4 293 97-438 1-316 (316)
8 cd05477 gastricsin Gastricsins 100.0 9.7E-56 2.1E-60 431.9 31.7 297 94-439 1-318 (318)
9 cd05472 cnd41_like Chloroplast 100.0 1.8E-55 4E-60 426.4 33.3 290 96-441 1-299 (299)
10 PTZ00147 plasmepsin-1; Provisi 100.0 2.3E-55 5.1E-60 441.7 34.6 304 85-440 127-450 (453)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.2E-55 2.7E-60 431.3 29.7 300 88-438 1-320 (320)
12 cd05487 renin_like Renin stimu 100.0 1.5E-55 3.3E-60 431.7 29.8 299 92-439 4-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 4.7E-55 1E-59 426.5 31.2 291 88-438 1-317 (317)
14 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.3E-54 2.9E-59 435.4 34.6 305 84-440 125-449 (450)
15 cd05485 Cathepsin_D_like Cathe 100.0 1.3E-54 2.8E-59 425.4 29.8 302 88-438 2-329 (329)
16 cd05489 xylanase_inhibitor_I_l 100.0 2.5E-53 5.4E-58 419.2 31.9 319 103-439 2-361 (362)
17 cd05473 beta_secretase_like Be 100.0 1.2E-52 2.5E-57 417.4 29.8 315 95-444 2-350 (364)
18 cd05475 nucellin_like Nucellin 100.0 1.3E-51 2.9E-56 393.7 30.0 258 95-441 1-273 (273)
19 cd05476 pepsin_A_like_plant Ch 100.0 4.5E-51 9.8E-56 388.7 29.7 259 96-441 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 5.6E-51 1.2E-55 390.9 25.6 265 97-438 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 3.6E-49 7.7E-54 381.9 26.8 270 96-439 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 5.8E-50 1.3E-54 391.2 19.6 295 96-439 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.1E-45 2.5E-50 355.0 27.8 268 97-438 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.3E-30 7.1E-35 226.5 14.1 156 97-263 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.2E-25 2.6E-30 197.4 13.5 148 285-438 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 8.5E-24 1.9E-28 173.3 12.4 106 99-226 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 1.3E-05 2.8E-10 63.2 7.0 94 95-228 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.2 0.002 4.2E-08 53.4 8.1 101 88-228 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.6 0.018 3.8E-07 44.4 8.7 89 99-227 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.4 0.045 9.7E-07 45.5 6.3 93 317-436 30-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 94.7 0.24 5.2E-06 41.1 8.8 93 93-228 13-107 (124)
32 PF11925 DUF3443: Protein of u 94.1 0.88 1.9E-05 44.4 12.2 57 172-230 82-150 (370)
33 PF08284 RVP_2: Retroviral asp 93.4 0.17 3.7E-06 42.7 5.4 99 316-439 34-132 (135)
34 cd05484 retropepsin_like_LTR_2 92.6 0.14 3E-06 39.9 3.4 29 97-127 1-29 (91)
35 COG3577 Predicted aspartyl pro 92.4 0.4 8.7E-06 42.7 6.3 85 86-204 94-179 (215)
36 PF13975 gag-asp_proteas: gag- 89.4 0.58 1.3E-05 34.6 4.0 34 93-128 5-38 (72)
37 TIGR02281 clan_AA_DTGA clan AA 87.3 1.4 3E-05 36.4 5.3 35 284-336 10-44 (121)
38 PF12384 Peptidase_A2B: Ty3 tr 86.0 1.8 3.9E-05 37.2 5.3 22 316-337 47-68 (177)
39 PF00077 RVP: Retroviral aspar 85.8 1.1 2.5E-05 35.2 4.0 27 98-126 7-33 (100)
40 TIGR03698 clan_AA_DTGF clan AA 84.5 1.6 3.5E-05 35.1 4.3 24 411-434 84-107 (107)
41 PF13650 Asp_protease_2: Aspar 84.5 1.1 2.4E-05 34.1 3.3 20 317-336 12-31 (90)
42 PF13975 gag-asp_proteas: gag- 81.3 2.3 4.9E-05 31.4 3.7 20 317-336 22-41 (72)
43 PF07172 GRP: Glycine rich pro 81.2 1.2 2.5E-05 35.0 2.1 13 1-14 1-13 (95)
44 cd05484 retropepsin_like_LTR_2 80.5 1.9 4.1E-05 33.3 3.2 31 292-337 4-34 (91)
45 cd05483 retropepsin_like_bacte 78.1 3.3 7.1E-05 31.8 3.9 20 317-336 16-35 (96)
46 cd05482 HIV_retropepsin_like R 77.7 3 6.5E-05 32.1 3.4 25 100-126 2-26 (87)
47 cd06095 RP_RTVL_H_like Retrope 76.9 3 6.5E-05 31.9 3.3 25 100-126 2-26 (86)
48 cd06095 RP_RTVL_H_like Retrope 74.3 3.6 7.7E-05 31.5 3.1 20 317-336 12-31 (86)
49 PF02160 Peptidase_A3: Caulifl 72.1 8.1 0.00018 34.7 5.2 95 316-438 22-117 (201)
50 PF00077 RVP: Retroviral aspar 66.7 5.7 0.00012 31.1 2.9 17 317-333 19-35 (100)
51 PF12384 Peptidase_A2B: Ty3 tr 63.4 9.7 0.00021 32.9 3.7 30 97-126 33-62 (177)
52 COG3577 Predicted aspartyl pro 59.2 25 0.00053 31.7 5.6 44 274-336 95-138 (215)
53 cd05481 retropepsin_like_LTR_1 54.6 12 0.00027 29.1 2.7 22 316-337 12-33 (93)
54 PF09668 Asp_protease: Asparty 50.2 17 0.00037 30.0 3.0 29 293-336 29-57 (124)
55 PF09668 Asp_protease: Asparty 49.3 10 0.00022 31.3 1.6 36 94-131 22-57 (124)
56 COG5550 Predicted aspartyl pro 45.0 12 0.00026 30.7 1.3 23 317-339 29-52 (125)
57 cd05470 pepsin_retropepsin_lik 39.0 28 0.00061 27.4 2.7 18 316-333 13-30 (109)
58 cd05481 retropepsin_like_LTR_1 36.6 27 0.00058 27.1 2.1 23 101-125 3-26 (93)
59 cd05475 nucellin_like Nucellin 33.2 57 0.0012 30.8 4.1 32 95-126 157-194 (273)
60 TIGR03698 clan_AA_DTGF clan AA 31.3 60 0.0013 25.9 3.4 64 99-193 2-70 (107)
61 KOG0012 DNA damage inducible p 30.3 2.3E+02 0.005 27.9 7.5 37 403-439 308-346 (380)
62 cd05476 pepsin_A_like_plant Ch 28.1 78 0.0017 29.6 4.1 33 94-126 145-193 (265)
63 PLN02266 endoglucanase 25.4 88 0.0019 32.6 4.1 39 1-43 3-41 (510)
64 cd06094 RP_Saci_like RP_Saci_l 23.9 3.5E+02 0.0075 21.0 6.4 21 108-128 8-28 (89)
65 cd05471 pepsin_like Pepsin-lik 23.6 73 0.0016 29.7 3.0 35 94-128 179-221 (283)
66 cd06097 Aspergillopepsin_like 23.0 74 0.0016 30.0 2.9 17 316-332 15-31 (278)
67 PF08284 RVP_2: Retroviral asp 22.7 1.2E+02 0.0026 25.4 3.8 30 95-126 20-49 (135)
68 cd00303 retropepsin_like Retro 22.2 1.2E+02 0.0027 21.2 3.5 20 316-335 11-30 (92)
69 PLN03207 stomagen; Provisional 22.1 1.3E+02 0.0028 23.5 3.4 17 9-25 13-29 (113)
70 cd06098 phytepsin Phytepsin, a 21.7 97 0.0021 29.9 3.5 33 94-126 187-227 (317)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7.9e-74 Score=577.08 Aligned_cols=404 Identities=32% Similarity=0.581 Sum_probs=340.3
Q ss_pred ccCCceeEEEEecCCCCCCCCCCCCCChHHHHHHHHHhHHHHHHHhhhcCCCCcccccccccccceecCccEEEEEEECC
Q 047238 26 SSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGT 105 (446)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~pl~~~~~~Y~~~i~iGt 105 (446)
.+...+++++|+||++++||+++++.+..++++++++|+++|.+++.++... ...+..++...+++|+++|.|||
T Consensus 19 ~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~Y~v~i~iGT 93 (431)
T PLN03146 19 EAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS-----PNDPQSDLISNGGEYLMNISIGT 93 (431)
T ss_pred cccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc-----CCccccCcccCCccEEEEEEcCC
Confidence 3466789999999999999988888888999999999999999998654321 22455667778899999999999
Q ss_pred CCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCC-C--CCCCC-CCceeeeeeCCCceEE
Q 047238 106 PMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRS-P--FKCQN-GKCVYTRRYHVGDVTR 181 (446)
Q Consensus 106 P~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~--~~C~~-~~~~~~~~Y~~g~~~~ 181 (446)
|||++.|++||||+++||+|.+|..|..+.++.|||++|+||+.++|.++.|.. + ..|.. +.|.|.+.|+||+.+.
T Consensus 94 Ppq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~ 173 (431)
T PLN03146 94 PPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTK 173 (431)
T ss_pred CCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCcee
Confidence 999999999999999999999999999888999999999999999999999987 3 34764 4699999999999789
Q ss_pred EEEEEEEEEeecCCC-ccccccEEEEeeecCCCCcCCCCcceeEecCCCCCchhHhhhhhccCceEEeeecC---CCCce
Q 047238 182 GLASRETFAFPVRNG-FTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVRE---MEATS 257 (446)
Q Consensus 182 G~~~~D~v~l~~~~~-~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~Ql~~~~~~~Fs~~l~~~---~~~~g 257 (446)
|.+++|+|+|++..+ .+.++++.|||++...+ .+....+||||||++..++++|+.....++|||||.+. ....|
T Consensus 174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g 252 (431)
T PLN03146 174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTS 252 (431)
T ss_pred eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-CccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcc
Confidence 999999999986432 25688999999998877 54346899999999999999998865557999999752 23589
Q ss_pred eEEEccCCccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHHH
Q 047238 258 VIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLM 337 (446)
Q Consensus 258 ~l~fGg~d~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~ 337 (446)
.|+||+......+.+.|+|++.+....+|.|.|++|+||++.+.++...+. ..+.+++||||||++++||+++|++|.
T Consensus 253 ~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~ 330 (431)
T PLN03146 253 KINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELE 330 (431)
T ss_pred eEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHH
Confidence 999999643223459999998654357999999999999999887766554 344568999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcCCCceEEEEEcCCCceeech
Q 047238 338 QRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGA 417 (446)
Q Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~~~~~C~~~~~~~~~~ilG~ 417 (446)
+++...+........ ...+..|+.... ...+|+|+|+|+|+++.|++++ |+++..++..|+++....+.||||+
T Consensus 331 ~~~~~~~~~~~~~~~----~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~-~~~~~~~~~~Cl~~~~~~~~~IlG~ 404 (431)
T PLN03146 331 SAVEEAIGGERVSDP----QGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLN-TFVKVSEDLVCFAMIPTSSIAIFGN 404 (431)
T ss_pred HHHHHHhccccCCCC----CCCCCccccCCC-CCCCCeEEEEECCCeeecCcce-eEEEcCCCcEEEEEecCCCceEECe
Confidence 999988753332222 334689997432 2478999999999999999999 9998777778999887666899999
Q ss_pred hhhceeEEEEECCCCEEEEEeCCCCC
Q 047238 418 WQQQNMLIIYDLNVPALRFGSENCAN 443 (446)
Q Consensus 418 ~fl~~~y~vfD~~~~riGfa~~~c~~ 443 (446)
.|||++|+|||++++|||||+.+|++
T Consensus 405 ~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 405 LAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred eeEeeEEEEEECCCCEEeeecCCcCc
Confidence 99999999999999999999999986
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.1e-59 Score=470.55 Aligned_cols=310 Identities=19% Similarity=0.317 Sum_probs=257.7
Q ss_pred cccccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCC
Q 047238 85 DIHLPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKC 163 (446)
Q Consensus 85 ~~~~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C 163 (446)
....||. +.+.+|+++|+||||||+|.|+|||||+++||+|..|..|.|..++.||+++|+||+...+...
T Consensus 108 ~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~-------- 179 (482)
T PTZ00165 108 YLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE-------- 179 (482)
T ss_pred ccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc--------
Confidence 3667877 7999999999999999999999999999999999999887778899999999999998432110
Q ss_pred CCCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCC--CcceeEecCCCCCc---------
Q 047238 164 QNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGG--KISGILGFNASPLS--------- 232 (446)
Q Consensus 164 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~--~~~GIlGLg~~~~s--------- 232 (446)
...+.++|++|+ +.|.+++|+|+|+ ++.++++.||+++...+ ..+. .+|||||||++..+
T Consensus 180 ---~~~~~i~YGsGs-~~G~l~~DtV~ig----~l~i~~q~FG~a~~~s~-~~f~~~~~DGILGLg~~~~s~~s~~~~~p 250 (482)
T PTZ00165 180 ---SAETYIQYGTGE-CVLALGKDTVKIG----GLKVKHQSIGLAIEESL-HPFADLPFDGLVGLGFPDKDFKESKKALP 250 (482)
T ss_pred ---cceEEEEeCCCc-EEEEEEEEEEEEC----CEEEccEEEEEEEeccc-cccccccccceeecCCCcccccccCCCCC
Confidence 024779999999 8899999999998 57999999999998765 3232 78999999998752
Q ss_pred hhHhhhhh---ccCceEEeeecCCCCceeEEEccCC-ccC--CCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCc
Q 047238 233 LSSQLRNR---IQGLFSYCLVREMEATSVIKFGRDA-DVR--RRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGA 306 (446)
Q Consensus 233 ~~~Ql~~~---~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~--~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 306 (446)
++.+|.++ ..++||+||.++...+|+|+|||+| .++ .+++.|+|+.. ..+|.|.+++|+||++.+.....
T Consensus 251 ~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~---~~yW~i~l~~i~vgg~~~~~~~~- 326 (482)
T PTZ00165 251 IVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS---TDYWEIEVVDILIDGKSLGFCDR- 326 (482)
T ss_pred HHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc---cceEEEEeCeEEECCEEeeecCC-
Confidence 34455442 4789999998765668999999999 555 57899999987 68999999999999987765322
Q ss_pred cccccCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCe---
Q 047238 307 FDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEA--- 383 (446)
Q Consensus 307 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~--- 383 (446)
...+|+||||+++++|++++++|.++++.. .+|+..+ .+|+|+|+|+|.
T Consensus 327 -------~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-----------------~~C~~~~----~lP~itf~f~g~~g~ 378 (482)
T PTZ00165 327 -------KCKAAIDTGSSLITGPSSVINPLLEKIPLE-----------------EDCSNKD----SLPRISFVLEDVNGR 378 (482)
T ss_pred -------ceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------ccccccc----cCCceEEEECCCCCc
Confidence 156999999999999999999999887322 4798765 899999999864
Q ss_pred --EEEEcCCCeEEEEc---C-CCceEE-EEEc------CCCceeechhhhceeEEEEECCCCEEEEEeCCCCCC
Q 047238 384 --DYIVQPENMYFIEP---D-RGRFCV-AIQD------DPKYSILGAWQQQNMLIIYDLNVPALRFGSENCANG 444 (446)
Q Consensus 384 --~~~l~~~~~y~~~~---~-~~~~C~-~~~~------~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~~ 444 (446)
+|.|+|++ |+++. . .+..|+ +++. .++.||||++|||+||+|||++++|||||+++|...
T Consensus 379 ~v~~~l~p~d-Yi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 379 KIKFDMDPED-YVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred eEEEEEchHH-eeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 89999999 99974 2 256896 4553 124799999999999999999999999999998754
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-57 Score=444.62 Aligned_cols=301 Identities=21% Similarity=0.330 Sum_probs=257.6
Q ss_pred ccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCC
Q 047238 88 LPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNG 166 (446)
Q Consensus 88 ~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~ 166 (446)
.||. ..+.+|+++|.||||+|++.|+|||||+++||+|..|..|.|+.++.|||++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC---------------
Confidence 3677 568999999999999999999999999999999999988777889999999999999877
Q ss_pred CceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCC--CcceeEecCCCCCc------hhHhhh
Q 047238 167 KCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGG--KISGILGFNASPLS------LSSQLR 238 (446)
Q Consensus 167 ~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~--~~~GIlGLg~~~~s------~~~Ql~ 238 (446)
+.+.+.|++|+ +.|.+++|+|+|+ ++.++++.|||++...+ .+.. ..+||||||++..+ ++.||.
T Consensus 66 -~~~~~~yg~gs-~~G~~~~D~v~ig----~~~i~~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 138 (317)
T cd05478 66 -QPLSIQYGTGS-MTGILGYDTVQVG----GISDTNQIFGLSETEPG-SFFYYAPFDGILGLAYPSIASSGATPVFDNMM 138 (317)
T ss_pred -cEEEEEECCce-EEEEEeeeEEEEC----CEEECCEEEEEEEecCc-cccccccccceeeeccchhcccCCCCHHHHHH
Confidence 78999999999 8999999999999 57889999999988766 4332 58999999987543 667766
Q ss_pred hh---ccCceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCC
Q 047238 239 NR---IQGLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGT 314 (446)
Q Consensus 239 ~~---~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 314 (446)
++ .+++||+||.++....|.|+|||+| ++|.|++.|+|+.. ..+|.|.+++|+||++.+.....
T Consensus 139 ~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~---~~~w~v~l~~v~v~g~~~~~~~~--------- 206 (317)
T cd05478 139 SQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA---ETYWQITVDSVTINGQVVACSGG--------- 206 (317)
T ss_pred hCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC---CcEEEEEeeEEEECCEEEccCCC---------
Confidence 54 3689999999865567999999999 88999999999976 68999999999999998764322
Q ss_pred CcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEE
Q 047238 315 GGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYF 394 (446)
Q Consensus 315 ~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~ 394 (446)
..+||||||+++++|++++++|++++++... .. ..+.++|+... .+|.|+|+|+|++++||+++ |+
T Consensus 207 ~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-----~~----~~~~~~C~~~~----~~P~~~f~f~g~~~~i~~~~-y~ 272 (317)
T cd05478 207 CQAIVDTGTSLLVGPSSDIANIQSDIGASQN-----QN----GEMVVNCSSIS----SMPDVVFTINGVQYPLPPSA-YI 272 (317)
T ss_pred CEEEECCCchhhhCCHHHHHHHHHHhCCccc-----cC----CcEEeCCcCcc----cCCcEEEEECCEEEEECHHH-he
Confidence 4699999999999999999999998865421 11 22347999765 78999999999999999999 99
Q ss_pred EEcCCCceEEE-EEcCC--CceeechhhhceeEEEEECCCCEEEEEe
Q 047238 395 IEPDRGRFCVA-IQDDP--KYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 395 ~~~~~~~~C~~-~~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
.+. ...|+. +...+ +.||||++|||++|+|||++++|||||+
T Consensus 273 ~~~--~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 273 LQD--QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ecC--CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 865 467986 54432 5799999999999999999999999996
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-57 Score=451.72 Aligned_cols=341 Identities=32% Similarity=0.577 Sum_probs=283.4
Q ss_pred ccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCC-CCCCCCCCCCCCCCCCccceecCCCCCCCC-C-CCC
Q 047238 88 LPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCI-RCFDQTTPIFDPRASTTYSEIPCDDPLCRS-P-FKC 163 (446)
Q Consensus 88 ~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~-~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~-~~C 163 (446)
.++. ..+++|+++|.||||||.|.|++||||+++||+|..|. .|..+.++.|+|++|+|++.+.|.++.|.. + ..|
T Consensus 37 ~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~ 116 (398)
T KOG1339|consen 37 ESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCS 116 (398)
T ss_pred cccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcc
Confidence 4444 57889999999999999999999999999999999999 797666666999999999999999999999 3 433
Q ss_pred CCCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCCCchhHhhhhh-
Q 047238 164 QNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASPLSLSSQLRNR- 240 (446)
Q Consensus 164 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~~s~~~Ql~~~- 240 (446)
.++.|.|.+.|+||+.++|.+++|+|+|++.+ .+.++++.|||+..+.+ .+. .+.+||||||+..+++.+|+...
T Consensus 117 ~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g-~~~~~~~~dGIlGLg~~~~S~~~q~~~~~ 194 (398)
T KOG1339|consen 117 PNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPG-SFGLFAAFDGILGLGRGSLSVPSQLPSFY 194 (398)
T ss_pred cCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCcc-ccccccccceEeecCCCCccceeeccccc
Confidence 46799999999997779999999999999632 26777899999999976 322 46899999999999999998754
Q ss_pred -ccCceEEeeecCCC---CceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCC
Q 047238 241 -IQGLFSYCLVREME---ATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTG 315 (446)
Q Consensus 241 -~~~~Fs~~l~~~~~---~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 315 (446)
..++||+||.+... ..|.|+||++| .++.+.+.|+||+.++. .+|.|.+++|+|+++. .++...+..+ ..
T Consensus 195 ~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~ 269 (398)
T KOG1339|consen 195 NAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLFCTD---GG 269 (398)
T ss_pred CCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceEecC---CC
Confidence 23469999998532 58999999999 77889999999999643 5999999999999976 4444443322 36
Q ss_pred cEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEc-CeEEEEcCCCeEE
Q 047238 316 GFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQ-EADYIVQPENMYF 394 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~-g~~~~l~~~~~y~ 394 (446)
++|+||||++++||+++|++|.+++.+.+.. .... ..+++.|+........+|.|+|+|+ |+.|.+++++ |+
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~----~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~-y~ 342 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTD----GEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKN-YL 342 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhheec--cccC----CceeeecccCCCCcccCCcEEEEECCCcEEEeCccc-eE
Confidence 8999999999999999999999999987411 0011 3456899988622123999999999 7999999999 99
Q ss_pred EEcCCCce-EEEEEcCC---CceeechhhhceeEEEEECC-CCEEEEEe--CCCC
Q 047238 395 IEPDRGRF-CVAIQDDP---KYSILGAWQQQNMLIIYDLN-VPALRFGS--ENCA 442 (446)
Q Consensus 395 ~~~~~~~~-C~~~~~~~---~~~ilG~~fl~~~y~vfD~~-~~riGfa~--~~c~ 442 (446)
++...+.. |++++... ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 343 ~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 343 VEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEECCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 98776444 99876543 37999999999999999999 99999999 7775
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6.4e-57 Score=441.63 Aligned_cols=298 Identities=20% Similarity=0.299 Sum_probs=247.9
Q ss_pred cCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCC--CCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCcee
Q 047238 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRC--FDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVY 170 (446)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C--~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~ 170 (446)
.+.+|+++|.||||+|++.|+|||||+++||+|..|..| .|..++.|+|++|+|++... |.|
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~----------------~~~ 66 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG----------------TEF 66 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC----------------cEE
Confidence 578999999999999999999999999999999999742 34678899999999998755 789
Q ss_pred eeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCCCc------hhHhhhhh--
Q 047238 171 TRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASPLS------LSSQLRNR-- 240 (446)
Q Consensus 171 ~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~~s------~~~Ql~~~-- 240 (446)
.+.|++|+ +.|.+++|+|+|+ ++.++++.|||++...+ ..+ ...+||||||++..+ ++++|.++
T Consensus 67 ~i~Yg~G~-~~G~~~~D~v~~g----~~~~~~~~Fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~ 140 (325)
T cd05490 67 AIQYGSGS-LSGYLSQDTVSIG----GLQVEGQLFGEAVKQPG-ITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKL 140 (325)
T ss_pred EEEECCcE-EEEEEeeeEEEEC----CEEEcCEEEEEEeeccC-CcccceeeeEEEecCCccccccCCCCHHHHHHhcCC
Confidence 99999998 8999999999999 57899999999988765 323 268999999998765 34455543
Q ss_pred -ccCceEEeeecCC--CCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCc
Q 047238 241 -IQGLFSYCLVREM--EATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGG 316 (446)
Q Consensus 241 -~~~~Fs~~l~~~~--~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 316 (446)
..++||+||.++. ...|+|+|||+| +++.+++.|+|+.. ..+|.|++++|+||++...... ...
T Consensus 141 i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~---~~~w~v~l~~i~vg~~~~~~~~---------~~~ 208 (325)
T cd05490 141 VEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR---KAYWQIHMDQVDVGSGLTLCKG---------GCE 208 (325)
T ss_pred CCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc---ceEEEEEeeEEEECCeeeecCC---------CCE
Confidence 4789999998732 347999999999 88999999999976 6899999999999986433221 257
Q ss_pred EEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEE
Q 047238 317 FIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIE 396 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~ 396 (446)
+||||||+++++|++++++|.+++++. +.. . ..+.++|+... .+|+|+|+|+|+.|+|+|++ |+++
T Consensus 209 aiiDSGTt~~~~p~~~~~~l~~~~~~~---~~~--~----~~~~~~C~~~~----~~P~i~f~fgg~~~~l~~~~-y~~~ 274 (325)
T cd05490 209 AIVDTGTSLITGPVEEVRALQKAIGAV---PLI--Q----GEYMIDCEKIP----TLPVISFSLGGKVYPLTGED-YILK 274 (325)
T ss_pred EEECCCCccccCCHHHHHHHHHHhCCc---ccc--C----CCEEecccccc----cCCCEEEEECCEEEEEChHH-eEEe
Confidence 999999999999999999999988643 111 1 23458999765 78999999999999999999 9987
Q ss_pred cCC--CceEEE-EEc------CCCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 397 PDR--GRFCVA-IQD------DPKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 397 ~~~--~~~C~~-~~~------~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
... ...|+. ++. ..+.||||++|||++|+|||++++|||||+
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 275 VSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred ccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 543 457975 442 124799999999999999999999999996
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.2e-56 Score=437.49 Aligned_cols=300 Identities=24% Similarity=0.389 Sum_probs=249.1
Q ss_pred ccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeee
Q 047238 95 LFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRY 174 (446)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y 174 (446)
++|+++|.||||+|++.|+|||||+++||+|..|..|.++.++.|+|++|+|++.+.|+++.|.....|.++.|.|.+.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y 81 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISY 81 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEE
Confidence 58999999999999999999999999999999999998888899999999999999999999965566888889999999
Q ss_pred CCCceEEEEEEEEEEEeecCCCc---cccccEEEEeeecCCCCcCC-CCcceeEecCCCCCc-hh---Hhhhhh-----c
Q 047238 175 HVGDVTRGLASRETFAFPVRNGF---TFVPRLAFGCSNDNSGFAFG-GKISGILGFNASPLS-LS---SQLRNR-----I 241 (446)
Q Consensus 175 ~~g~~~~G~~~~D~v~l~~~~~~---~~~~~~~fg~~~~~~~~~~~-~~~~GIlGLg~~~~s-~~---~Ql~~~-----~ 241 (446)
++|+.+.|.+++|+|+|++.... ....++.|||+..+.+ .+. ...+||||||+...+ .. .++..+ .
T Consensus 82 ~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~ 160 (326)
T cd06096 82 SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLKK 160 (326)
T ss_pred CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccccCchhHHHHHhcccccC
Confidence 99987999999999999953210 1123578999998776 433 378999999998753 11 111111 2
Q ss_pred cCceEEeeecCCCCceeEEEccCC-ccCC----------CCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccc
Q 047238 242 QGLFSYCLVREMEATSVIKFGRDA-DVRR----------RDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIM 310 (446)
Q Consensus 242 ~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~----------g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 310 (446)
.++||+||++ ..|.|+|||+| .++. +++.|+|+.. ..+|.|.+++|+|+++.....
T Consensus 161 ~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l~~i~vg~~~~~~~------- 227 (326)
T cd06096 161 DKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKLEGLSVYGTTSNSG------- 227 (326)
T ss_pred CceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEEEEEEEccccccee-------
Confidence 4899999987 47999999999 7776 7999999987 589999999999998861110
Q ss_pred cCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEc-CeEEEEcC
Q 047238 311 RDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQ-EADYIVQP 389 (446)
Q Consensus 311 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~-g~~~~l~~ 389 (446)
......+||||||++++||+++|++|.+++ |+|+|+|+ |++++++|
T Consensus 228 ~~~~~~aivDSGTs~~~lp~~~~~~l~~~~---------------------------------P~i~~~f~~g~~~~i~p 274 (326)
T cd06096 228 NTKGLGMLVDSGSTLSHFPEDLYNKINNFF---------------------------------PTITIIFENNLKIDWKP 274 (326)
T ss_pred cccCCCEEEeCCCCcccCCHHHHHHHHhhc---------------------------------CcEEEEEcCCcEEEECH
Confidence 012367999999999999999998876543 78999998 79999999
Q ss_pred CCeEEEEcCCCceEEEEEcCCCceeechhhhceeEEEEECCCCEEEEEeCCCC
Q 047238 390 ENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGSENCA 442 (446)
Q Consensus 390 ~~~y~~~~~~~~~C~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~ 442 (446)
++ |+++..+...|+.+....+.+|||++|||++|+|||++++|||||+++|.
T Consensus 275 ~~-y~~~~~~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 275 SS-YLYKKESFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HH-hccccCCceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99 99876555455666655578999999999999999999999999999994
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.4e-56 Score=437.30 Aligned_cols=293 Identities=22% Similarity=0.331 Sum_probs=245.5
Q ss_pred EEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeCC
Q 047238 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHV 176 (446)
Q Consensus 97 Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~~ 176 (446)
|+++|+||||+|+++|+|||||+++||+|..|..+.|..++.|||++|+|++... |.+.+.|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~----------------~~~~i~Yg~ 64 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG----------------EAFSIQYGT 64 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC----------------cEEEEEeCC
Confidence 8999999999999999999999999999999975555778999999999999877 789999999
Q ss_pred CceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCCCc------hhHhhhhh---ccCce
Q 047238 177 GDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASPLS------LSSQLRNR---IQGLF 245 (446)
Q Consensus 177 g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~~s------~~~Ql~~~---~~~~F 245 (446)
|+ +.|.+++|+|+|+ ++.++++.|||+..+.+ ..+ ...+||||||++..+ +.++|.++ ..++|
T Consensus 65 g~-~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~F 138 (316)
T cd05486 65 GS-LTGIIGIDQVTVE----GITVQNQQFAESVSEPG-STFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMF 138 (316)
T ss_pred cE-EEEEeeecEEEEC----CEEEcCEEEEEeeccCc-ccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEE
Confidence 98 8999999999998 57899999999887665 323 278999999997765 34455433 36899
Q ss_pred EEeeecCC--CCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEecc
Q 047238 246 SYCLVREM--EATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTG 322 (446)
Q Consensus 246 s~~l~~~~--~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSG 322 (446)
|+||.+++ ...|.|+|||+| +++.|++.|+|+.. ..+|.|.+++|+||++.+..... ..+|||||
T Consensus 139 S~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~---~~~w~v~l~~i~v~g~~~~~~~~---------~~aiiDTG 206 (316)
T cd05486 139 SVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV---QGYWQIQLDNIQVGGTVIFCSDG---------CQAIVDTG 206 (316)
T ss_pred EEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC---ceEEEEEeeEEEEecceEecCCC---------CEEEECCC
Confidence 99998732 357999999999 88999999999976 68999999999999987654322 46999999
Q ss_pred CccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcC--CC
Q 047238 323 TPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPD--RG 400 (446)
Q Consensus 323 Tt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~--~~ 400 (446)
|+++++|++++++|.+.+++.. .. ..+.++|+..+ .+|+|+|+|+|++++|+|++ |++... ..
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~~------~~----~~~~~~C~~~~----~~p~i~f~f~g~~~~l~~~~-y~~~~~~~~~ 271 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGATA------TD----GEYGVDCSTLS----LMPSVTFTINGIPYSLSPQA-YTLEDQSDGG 271 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCcc------cC----CcEEEeccccc----cCCCEEEEECCEEEEeCHHH-eEEecccCCC
Confidence 9999999999999988775431 11 22347998765 79999999999999999999 998752 25
Q ss_pred ceEEE-EEc------CCCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 401 RFCVA-IQD------DPKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 401 ~~C~~-~~~------~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
..|+. ++. .++.||||++|||++|+|||.+++|||||+
T Consensus 272 ~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 272 GYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 67975 432 124799999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=9.7e-56 Score=431.94 Aligned_cols=297 Identities=22% Similarity=0.361 Sum_probs=251.5
Q ss_pred CccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeee
Q 047238 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRR 173 (446)
Q Consensus 94 ~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~ 173 (446)
|..|+++|.||||+|++.|+|||||+++||+|..|..+.|..++.|||++|+|++... |.|.+.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~----------------~~~~~~ 64 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG----------------ETFSLQ 64 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC----------------cEEEEE
Confidence 4689999999999999999999999999999999987666788999999999999876 789999
Q ss_pred eCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCC------CchhHhhhhh---cc
Q 047238 174 YHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASP------LSLSSQLRNR---IQ 242 (446)
Q Consensus 174 Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~------~s~~~Ql~~~---~~ 242 (446)
|++|+ +.|.+++|+|+|+ ++.++++.|||++...+ ..+ ...+||||||++. .++++||.++ ..
T Consensus 65 Yg~Gs-~~G~~~~D~i~~g----~~~i~~~~Fg~~~~~~~-~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~ 138 (318)
T cd05477 65 YGSGS-LTGIFGYDTVTVQ----GIIITNQEFGLSETEPG-TNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQA 138 (318)
T ss_pred ECCcE-EEEEEEeeEEEEC----CEEEcCEEEEEEEeccc-ccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCC
Confidence 99998 8999999999998 57889999999998765 322 2679999999864 3467777653 47
Q ss_pred CceEEeeecC-CCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEe
Q 047238 243 GLFSYCLVRE-MEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIID 320 (446)
Q Consensus 243 ~~Fs~~l~~~-~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 320 (446)
++||+||.++ ....|.|+|||+| +++.+++.|+|+.. ..+|.|.+++|+|+++.+..... ...+|||
T Consensus 139 ~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~--------~~~~iiD 207 (318)
T cd05477 139 PIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS---ETYWQIGIQGFQINGQATGWCSQ--------GCQAIVD 207 (318)
T ss_pred CEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC---ceEEEEEeeEEEECCEEecccCC--------CceeeEC
Confidence 8999999874 2457999999999 88999999999976 68999999999999987753322 1469999
Q ss_pred ccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcCCC
Q 047238 321 TGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRG 400 (446)
Q Consensus 321 SGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~~~ 400 (446)
|||+++++|++++++|++.+++... .. ..+.++|+... .+|+|+|+|+|+++.||+++ |+.+. .
T Consensus 208 SGtt~~~lP~~~~~~l~~~~~~~~~-----~~----~~~~~~C~~~~----~~p~l~~~f~g~~~~v~~~~-y~~~~--~ 271 (318)
T cd05477 208 TGTSLLTAPQQVMSTLMQSIGAQQD-----QY----GQYVVNCNNIQ----NLPTLTFTINGVSFPLPPSA-YILQN--N 271 (318)
T ss_pred CCCccEECCHHHHHHHHHHhCCccc-----cC----CCEEEeCCccc----cCCcEEEEECCEEEEECHHH-eEecC--C
Confidence 9999999999999999999866522 11 22348899865 78999999999999999999 99865 4
Q ss_pred ceEE-EEEcC------C-CceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 401 RFCV-AIQDD------P-KYSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 401 ~~C~-~~~~~------~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
..|+ ++.+. + +.||||++|||++|+|||++++|||||++
T Consensus 272 ~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 272 GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 5796 56431 2 36999999999999999999999999985
No 9
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.8e-55 Score=426.43 Aligned_cols=290 Identities=33% Similarity=0.602 Sum_probs=240.2
Q ss_pred cEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeC
Q 047238 96 FYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYH 175 (446)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~ 175 (446)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------~~~~i~Yg 41 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------CLYQVSYG 41 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------CeeeeEeC
Confidence 599999999999999999999999999987654 24899999
Q ss_pred CCceEEEEEEEEEEEeecCCCcc-ccccEEEEeeecCCCCcCCCCcceeEecCCCCCchhHhhhhhccCceEEeeecCC-
Q 047238 176 VGDVTRGLASRETFAFPVRNGFT-FVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREM- 253 (446)
Q Consensus 176 ~g~~~~G~~~~D~v~l~~~~~~~-~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~Ql~~~~~~~Fs~~l~~~~- 253 (446)
+|+.++|.+++|+|+|++ . .++++.|||+...++ . +...+||||||+...++++|+.....++||+||.+..
T Consensus 42 ~Gs~~~G~~~~D~v~ig~----~~~~~~~~Fg~~~~~~~-~-~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~ 115 (299)
T cd05472 42 DGSYTTGDLATDTLTLGS----SDVVPGFAFGCGHDNEG-L-FGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSS 115 (299)
T ss_pred CCceEEEEEEEEEEEeCC----CCccCCEEEECCccCCC-c-cCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCC
Confidence 999779999999999994 4 788999999998876 4 3478999999999999999987656789999998743
Q ss_pred CCceeEEEccCCccCCCCceeeeeecCCCC-CeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchH
Q 047238 254 EATSVIKFGRDADVRRRDLETTPILLSDLR-PHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGP 332 (446)
Q Consensus 254 ~~~g~l~fGg~d~~~~g~l~~~p~~~~~~~-~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 332 (446)
...|+|+|||+|.. .+++.|+|++.++.. .+|.|+|++|+||++.+..+... .....+||||||++++||+++
T Consensus 116 ~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~ 189 (299)
T cd05472 116 SSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSA 189 (299)
T ss_pred CCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHHH
Confidence 56899999999944 899999999986533 79999999999999987653211 123579999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCC-CCCcCeEEEEEc-CeEEEEcCCCeEEEEcC-CCceEEEEEcC
Q 047238 333 YQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSS-FKAYPSMTFHLQ-EADYIVQPENMYFIEPD-RGRFCVAIQDD 409 (446)
Q Consensus 333 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~p~i~~~f~-g~~~~l~~~~~y~~~~~-~~~~C~~~~~~ 409 (446)
|++|.+++.+.......... ...+..|+..+.. ...+|+|+|+|+ |++++|++++ |+++.. .+..|+++...
T Consensus 190 ~~~l~~~l~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~-y~~~~~~~~~~C~~~~~~ 264 (299)
T cd05472 190 YAALRDAFRAAMAAYPRAPG----FSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASG-VLYPVDDSSQVCLAFAGT 264 (299)
T ss_pred HHHHHHHHHHHhccCCCCCC----CCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCccc-EEEEecCCCCEEEEEeCC
Confidence 99999999887632111111 1122359865433 347999999998 7999999999 998433 36789988764
Q ss_pred ---CCceeechhhhceeEEEEECCCCEEEEEeCCC
Q 047238 410 ---PKYSILGAWQQQNMLIIYDLNVPALRFGSENC 441 (446)
Q Consensus 410 ---~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c 441 (446)
.+.||||+.|||++|+|||++++|||||+++|
T Consensus 265 ~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 265 SDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 24799999999999999999999999999999
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.3e-55 Score=441.67 Aligned_cols=304 Identities=19% Similarity=0.300 Sum_probs=250.1
Q ss_pred cccccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCC
Q 047238 85 DIHLPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKC 163 (446)
Q Consensus 85 ~~~~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C 163 (446)
...+||. ..+.+|+++|+||||+|++.|+|||||+++||+|..|..|.|..++.|||++|+|++..+
T Consensus 127 ~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 127 FDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred CCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC------------
Confidence 4567886 788999999999999999999999999999999999987777889999999999999887
Q ss_pred CCCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCc-CC--CCcceeEecCCCCCc------hh
Q 047238 164 QNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFA-FG--GKISGILGFNASPLS------LS 234 (446)
Q Consensus 164 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~-~~--~~~~GIlGLg~~~~s------~~ 234 (446)
+.+.+.|++|+ +.|.+++|+|+|+ ++.++ ..|+++....+|. .+ ...|||||||++..+ ++
T Consensus 195 ----~~f~i~Yg~Gs-vsG~~~~DtVtiG----~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~ 264 (453)
T PTZ00147 195 ----TKVEMNYVSGT-VSGFFSKDLVTIG----NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYV 264 (453)
T ss_pred ----CEEEEEeCCCC-EEEEEEEEEEEEC----CEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHH
Confidence 78999999998 9999999999999 46676 5788887665421 11 268999999998765 34
Q ss_pred Hhhhhh---ccCceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccc
Q 047238 235 SQLRNR---IQGLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIM 310 (446)
Q Consensus 235 ~Ql~~~---~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 310 (446)
.+|..+ ..++||+||++.....|.|+|||+| ++|.|++.|+|+.. ..+|.|.++ +.+++... .
T Consensus 265 ~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~---~~~W~V~l~-~~vg~~~~--~------- 331 (453)
T PTZ00147 265 VELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH---DLYWQVDLD-VHFGNVSS--E------- 331 (453)
T ss_pred HHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC---CceEEEEEE-EEECCEec--C-------
Confidence 455433 4789999998755568999999999 88999999999975 689999998 57765421 1
Q ss_pred cCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCC
Q 047238 311 RDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPE 390 (446)
Q Consensus 311 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~ 390 (446)
...+||||||+++++|+++++++++++.+.. .... ..+.++|+.. .+|+|+|.|+|..++|+|+
T Consensus 332 ---~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~~~----~~y~~~C~~~-----~lP~~~f~f~g~~~~L~p~ 395 (453)
T PTZ00147 332 ---KANVIVDSGTSVITVPTEFLNKFVESLDVFK----VPFL----PLYVTTCNNT-----KLPTLEFRSPNKVYTLEPE 395 (453)
T ss_pred ---ceeEEECCCCchhcCCHHHHHHHHHHhCCee----cCCC----CeEEEeCCCC-----CCCeEEEEECCEEEEECHH
Confidence 2469999999999999999999999885431 1111 2234789863 7899999999999999999
Q ss_pred CeEEEEcCC--CceEEE-EEcC---CCceeechhhhceeEEEEECCCCEEEEEeCC
Q 047238 391 NMYFIEPDR--GRFCVA-IQDD---PKYSILGAWQQQNMLIIYDLNVPALRFGSEN 440 (446)
Q Consensus 391 ~~y~~~~~~--~~~C~~-~~~~---~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 440 (446)
+ |+.+..+ ...|+. +++. .+.||||++|||++|+|||++++|||||+++
T Consensus 396 ~-yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 396 Y-YLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred H-heeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9 9876433 457975 5542 2479999999999999999999999999986
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.2e-55 Score=431.28 Aligned_cols=300 Identities=21% Similarity=0.336 Sum_probs=251.1
Q ss_pred ccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCC
Q 047238 88 LPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNG 166 (446)
Q Consensus 88 ~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~ 166 (446)
+||. +.+.+|+++|.||||+|++.|+|||||+++||+|..|..+.|..++.|++++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~--------------- 65 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG--------------- 65 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC---------------
Confidence 3666 578899999999999999999999999999999999986555778899999999998776
Q ss_pred CceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCCCchhH------hhh
Q 047238 167 KCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASPLSLSS------QLR 238 (446)
Q Consensus 167 ~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~~s~~~------Ql~ 238 (446)
|.+.+.|++|+ +.|.+++|+|+|+ ++.++++.|||++...+ ..+ ...+||||||++..+... +|.
T Consensus 66 -~~~~~~y~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~a~~~~g-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 66 -TEFKIQYGSGS-LEGFVSQDTLSIG----DLTIKKQDFAEATSEPG-LAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred -CEEEEEECCce-EEEEEEEeEEEEC----CEEECCEEEEEEecCCC-cceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 78999999998 8999999999998 57889999999987766 322 267999999998766432 332
Q ss_pred hh---ccCceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCC
Q 047238 239 NR---IQGLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGT 314 (446)
Q Consensus 239 ~~---~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 314 (446)
++ ..++||+||.+.....|.|+|||+| .++.+++.|+|+.. ..+|.|++++|+||++.+....
T Consensus 139 ~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~w~v~l~~i~vg~~~~~~~~---------- 205 (320)
T cd05488 139 NQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR---KAYWEVELEKIGLGDEELELEN---------- 205 (320)
T ss_pred hcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc---CcEEEEEeCeEEECCEEeccCC----------
Confidence 22 3789999999855568999999999 88999999999986 5899999999999998775432
Q ss_pred CcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEE
Q 047238 315 GGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYF 394 (446)
Q Consensus 315 ~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~ 394 (446)
..++|||||++++||++++++|.+.+++... .. ..+.++|+... .+|.|+|+|+|+++.||+++ |+
T Consensus 206 ~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~----~~~~~~C~~~~----~~P~i~f~f~g~~~~i~~~~-y~ 271 (320)
T cd05488 206 TGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WN----GQYTVDCSKVD----SLPDLTFNFDGYNFTLGPFD-YT 271 (320)
T ss_pred CeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cC----CcEEeeccccc----cCCCEEEEECCEEEEECHHH-he
Confidence 4699999999999999999999988854311 11 22337898765 78999999999999999999 99
Q ss_pred EEcCCCceEEEEE-cC------CCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 395 IEPDRGRFCVAIQ-DD------PKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 395 ~~~~~~~~C~~~~-~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
++. ...|+..+ .. ++.||||+.|||++|+|||++++|||||+
T Consensus 272 ~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 272 LEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 853 34698643 21 24799999999999999999999999996
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.5e-55 Score=431.74 Aligned_cols=299 Identities=20% Similarity=0.336 Sum_probs=248.3
Q ss_pred ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCC--CCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCce
Q 047238 92 KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRC--FDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCV 169 (446)
Q Consensus 92 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C--~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~ 169 (446)
+.+.+|+++|+||||+|+++|+|||||+++||++..|..| .|..++.|+|++|+|++... |.
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~----------------~~ 67 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG----------------TE 67 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC----------------EE
Confidence 4678999999999999999999999999999999999753 45678899999999999877 88
Q ss_pred eeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcC-CCCcceeEecCCCCCc------hhHhhhhh--
Q 047238 170 YTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAF-GGKISGILGFNASPLS------LSSQLRNR-- 240 (446)
Q Consensus 170 ~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GIlGLg~~~~s------~~~Ql~~~-- 240 (446)
+++.|++|+ +.|.+++|+|+|++ +.+ ++.||++.......+ ....+||||||++..+ ++.+|.++
T Consensus 68 ~~~~Yg~g~-~~G~~~~D~v~~g~----~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~ 141 (326)
T cd05487 68 FTIHYASGT-VKGFLSQDIVTVGG----IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGV 141 (326)
T ss_pred EEEEeCCce-EEEEEeeeEEEECC----EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCC
Confidence 999999998 99999999999994 455 478999987643121 2368999999997654 23333332
Q ss_pred -ccCceEEeeecCC--CCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCc
Q 047238 241 -IQGLFSYCLVREM--EATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGG 316 (446)
Q Consensus 241 -~~~~Fs~~l~~~~--~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 316 (446)
..++||+||.+++ ...|.|+|||+| ++|.|++.|+|+.. ..+|.|++++|+|+++.+..... ..
T Consensus 142 i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~---~~~w~v~l~~i~vg~~~~~~~~~---------~~ 209 (326)
T cd05487 142 LKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK---TGFWQIQMKGVSVGSSTLLCEDG---------CT 209 (326)
T ss_pred CCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc---CceEEEEecEEEECCEEEecCCC---------CE
Confidence 4789999998743 458999999999 89999999999876 68999999999999987654322 46
Q ss_pred EEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEE
Q 047238 317 FIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIE 396 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~ 396 (446)
++|||||++++||++++++|++++++... . ..+.++|+... .+|.|+|+|+|..++|++++ |+++
T Consensus 210 aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~----~~y~~~C~~~~----~~P~i~f~fgg~~~~v~~~~-yi~~ 274 (326)
T cd05487 210 AVVDTGASFISGPTSSISKLMEALGAKER------L----GDYVVKCNEVP----TLPDISFHLGGKEYTLSSSD-YVLQ 274 (326)
T ss_pred EEECCCccchhCcHHHHHHHHHHhCCccc------C----CCEEEeccccC----CCCCEEEEECCEEEEeCHHH-hEEe
Confidence 99999999999999999999999865421 1 33458999865 78999999999999999999 9988
Q ss_pred cCC--CceEEE-EEc------CCCceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 397 PDR--GRFCVA-IQD------DPKYSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 397 ~~~--~~~C~~-~~~------~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
..+ +..|+. +.. .++.||||++|||++|+|||++++|||||++
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 654 567974 543 1247999999999999999999999999985
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.7e-55 Score=426.46 Aligned_cols=291 Identities=21% Similarity=0.343 Sum_probs=242.4
Q ss_pred ccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCC---CCCCCCCCCCCCCCCCccceecCCCCCCCCCCCC
Q 047238 88 LPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCI---RCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKC 163 (446)
Q Consensus 88 ~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~---~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C 163 (446)
+||. ..+.+|+++|.||||+|++.|+|||||+++||+|..|. .| ..++.|+|++|+|++..+
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~------------ 66 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG------------ 66 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC------------
Confidence 3565 67899999999999999999999999999999999995 56 568899999999998876
Q ss_pred CCCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC-CCcceeEecCCCCCch------hHh
Q 047238 164 QNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG-GKISGILGFNASPLSL------SSQ 236 (446)
Q Consensus 164 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GIlGLg~~~~s~------~~Q 236 (446)
+.+.+.|++|+ +.|.+++|+|+|+ +..++++.||+++.+.+..+. ..++||||||++..+. ..+
T Consensus 67 ----~~~~i~Yg~G~-~~G~~~~D~v~ig----~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 67 ----TSASIQYGTGS-ISGFFSQDSVTVG----DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred ----CEEEEEcCCce-EEEEEEeeEEEEC----CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHH
Confidence 78999999998 8999999999999 578999999999876541222 2789999999986653 334
Q ss_pred hhhh---ccCceEEeeecC--CCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccc
Q 047238 237 LRNR---IQGLFSYCLVRE--MEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIM 310 (446)
Q Consensus 237 l~~~---~~~~Fs~~l~~~--~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 310 (446)
|.++ ..++||+||.+. ....|.|+|||+| ++|.|++.|+|+.. ..+|.|.+++|+||++.+.....
T Consensus 138 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~----- 209 (317)
T cd06098 138 MVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR---KGYWQFEMGDVLIGGKSTGFCAG----- 209 (317)
T ss_pred HHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc---CcEEEEEeCeEEECCEEeeecCC-----
Confidence 4332 368999999873 2358999999999 88999999999976 68999999999999987764332
Q ss_pred cCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCC
Q 047238 311 RDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPE 390 (446)
Q Consensus 311 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~ 390 (446)
...+||||||+++++|++++++|. ..++|+... .+|+|+|+|+|+.++|+++
T Consensus 210 ---~~~aivDTGTs~~~lP~~~~~~i~---------------------~~~~C~~~~----~~P~i~f~f~g~~~~l~~~ 261 (317)
T cd06098 210 ---GCAAIADSGTSLLAGPTTIVTQIN---------------------SAVDCNSLS----SMPNVSFTIGGKTFELTPE 261 (317)
T ss_pred ---CcEEEEecCCcceeCCHHHHHhhh---------------------ccCCccccc----cCCcEEEEECCEEEEEChH
Confidence 146999999999999998776543 126898765 7899999999999999999
Q ss_pred CeEEEEcCC--CceEEE-EEc------CCCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 391 NMYFIEPDR--GRFCVA-IQD------DPKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 391 ~~y~~~~~~--~~~C~~-~~~------~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
+ |+++..+ ...|+. ++. .++.||||+.|||++|+|||++++|||||+
T Consensus 262 ~-yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 262 Q-YILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred H-eEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9 9987544 457975 432 124799999999999999999999999995
No 14
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.3e-54 Score=435.35 Aligned_cols=305 Identities=17% Similarity=0.297 Sum_probs=247.7
Q ss_pred ccccccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCC
Q 047238 84 EDIHLPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFK 162 (446)
Q Consensus 84 ~~~~~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~ 162 (446)
..-.+||. ..+.+|+++|.||||+|++.|+|||||+++||+|..|..+.|..++.|||++|+|++..+
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~----------- 193 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG----------- 193 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-----------
Confidence 34567786 678899999999999999999999999999999999986666788999999999999877
Q ss_pred CCCCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCC-cCC--CCcceeEecCCCCCc------h
Q 047238 163 CQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGF-AFG--GKISGILGFNASPLS------L 233 (446)
Q Consensus 163 C~~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~-~~~--~~~~GIlGLg~~~~s------~ 233 (446)
+.+.+.|++|+ +.|.+++|+|+|+ ++.++ ..|+++.....+ ..+ ..++||||||++..+ +
T Consensus 194 -----~~~~i~YG~Gs-v~G~~~~Dtv~iG----~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~ 262 (450)
T PTZ00013 194 -----TKVDITYGSGT-VKGFFSKDLVTLG----HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPI 262 (450)
T ss_pred -----cEEEEEECCce-EEEEEEEEEEEEC----CEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCH
Confidence 78999999998 9999999999999 46666 578887765320 112 268999999998765 3
Q ss_pred hHhhhhh---ccCceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCcccc
Q 047238 234 SSQLRNR---IQGLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDI 309 (446)
Q Consensus 234 ~~Ql~~~---~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 309 (446)
+.||.++ ..++||+||++.+...|.|+|||+| ++|.|++.|+|+.. ..+|.|.++ +.+|.....
T Consensus 263 ~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~---~~yW~I~l~-v~~G~~~~~-------- 330 (450)
T PTZ00013 263 VVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH---DLYWQIDLD-VHFGKQTMQ-------- 330 (450)
T ss_pred HHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc---CceEEEEEE-EEECceecc--------
Confidence 4566543 4789999998754568999999999 88999999999975 689999998 666543221
Q ss_pred ccCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcC
Q 047238 310 MRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQP 389 (446)
Q Consensus 310 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~ 389 (446)
...+||||||+++++|+++++++.+.++... .... ..+.++|+.. .+|+|+|+|+|.+++|+|
T Consensus 331 ----~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~----~~~~----~~y~~~C~~~-----~lP~i~F~~~g~~~~L~p 393 (450)
T PTZ00013 331 ----KANVIVDSGTTTITAPSEFLNKFFANLNVIK----VPFL----PFYVTTCDNK-----EMPTLEFKSANNTYTLEP 393 (450)
T ss_pred ----ccceEECCCCccccCCHHHHHHHHHHhCCee----cCCC----CeEEeecCCC-----CCCeEEEEECCEEEEECH
Confidence 1469999999999999999999998885431 1111 2234789763 789999999999999999
Q ss_pred CCeEEEEcC--CCceEEE-EEcC---CCceeechhhhceeEEEEECCCCEEEEEeCC
Q 047238 390 ENMYFIEPD--RGRFCVA-IQDD---PKYSILGAWQQQNMLIIYDLNVPALRFGSEN 440 (446)
Q Consensus 390 ~~~y~~~~~--~~~~C~~-~~~~---~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 440 (446)
++ |+.+.. ++..|+. +.+. .+.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~-Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 394 EY-YMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HH-heehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99 987543 2567974 5442 2579999999999999999999999999976
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.3e-54 Score=425.38 Aligned_cols=302 Identities=20% Similarity=0.270 Sum_probs=251.2
Q ss_pred ccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCC--CCCCCCCCCCCCCCccceecCCCCCCCCCCCCC
Q 047238 88 LPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRC--FDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQ 164 (446)
Q Consensus 88 ~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C--~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~ 164 (446)
.||. +.+.+|+++|+||||+|++.|++||||+++||+|..|..| .|..++.|+|++|+|++...
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC-------------
Confidence 3566 6889999999999999999999999999999999999732 23567899999999999877
Q ss_pred CCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCCCch------hHh
Q 047238 165 NGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASPLSL------SSQ 236 (446)
Q Consensus 165 ~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~~s~------~~Q 236 (446)
|.|.+.|++|+ +.|.+++|+|+|+ ++.++++.||++....+ ..+ ...+||||||++..+. +.|
T Consensus 69 ---~~~~i~Y~~g~-~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~-~~~~~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 69 ---TEFAIQYGSGS-LSGFLSTDTVSVG----GVSVKGQTFAEAINEPG-LTFVAAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred ---eEEEEEECCce-EEEEEecCcEEEC----CEEECCEEEEEEEecCC-ccccccccceEEEcCCccccccCCCCHHHH
Confidence 88999999998 8999999999998 57889999999987665 323 2689999999987653 455
Q ss_pred hhhh---ccCceEEeeecCC--CCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccc
Q 047238 237 LRNR---IQGLFSYCLVREM--EATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIM 310 (446)
Q Consensus 237 l~~~---~~~~Fs~~l~~~~--~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 310 (446)
|.++ ..++||+||.+.+ ...|+|+|||+| +++.|++.|+|+.. ..+|.|.+++|+++++.+...
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~------- 209 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR---KGYWQFKMDSVSVGEGEFCSG------- 209 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC---ceEEEEEeeEEEECCeeecCC-------
Confidence 5443 3689999998732 357999999999 88999999999976 689999999999999865421
Q ss_pred cCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCC
Q 047238 311 RDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPE 390 (446)
Q Consensus 311 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~ 390 (446)
...+||||||+++++|++++++|.+++++.. . .. ..+.++|+..+ .+|+|+|+|+|+.+.|+++
T Consensus 210 ---~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---~--~~----~~~~~~C~~~~----~~p~i~f~fgg~~~~i~~~ 273 (329)
T cd05485 210 ---GCQAIADTGTSLIAGPVDEIEKLNNAIGAKP---I--IG----GEYMVNCSAIP----SLPDITFVLGGKSFSLTGK 273 (329)
T ss_pred ---CcEEEEccCCcceeCCHHHHHHHHHHhCCcc---c--cC----CcEEEeccccc----cCCcEEEEECCEEeEEChH
Confidence 1469999999999999999999998886531 1 11 22458999765 7899999999999999999
Q ss_pred CeEEEEcCC--CceEEE-EEcC------CCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 391 NMYFIEPDR--GRFCVA-IQDD------PKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 391 ~~y~~~~~~--~~~C~~-~~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
+ |+++..+ ...|+. ++.. ++.||||++|||++|+|||++++|||||+
T Consensus 274 ~-yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 274 D-YVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred H-eEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 9 9988654 467975 5421 24799999999999999999999999985
No 16
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.5e-53 Score=419.16 Aligned_cols=319 Identities=24% Similarity=0.433 Sum_probs=259.1
Q ss_pred ECCCCce-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCC-C-------------CCCCCCC
Q 047238 103 IGTPMKP-QHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRS-P-------------FKCQNGK 167 (446)
Q Consensus 103 iGtP~Q~-~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~-------------~~C~~~~ 167 (446)
+|||-.+ +.|++||||+++||+|.+ .+|+|+..+.|.++.|.. + ..|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888777 999999999999999864 458899999999999985 1 1576677
Q ss_pred ceeeee-eCCCceEEEEEEEEEEEeecCCCc----cccccEEEEeeecCCCCcCCCCcceeEecCCCCCchhHhhhhh--
Q 047238 168 CVYTRR-YHVGDVTRGLASRETFAFPVRNGF----TFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNR-- 240 (446)
Q Consensus 168 ~~~~~~-Y~~g~~~~G~~~~D~v~l~~~~~~----~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~Ql~~~-- 240 (446)
|.|... |++|+.+.|.+++|+|+|+..+++ ..++++.|||+.......++..++||||||++++|+++||...
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 988655 789987999999999999865443 3788999999988643012336899999999999999998754
Q ss_pred ccCceEEeeecCCCCceeEEEccCC-ccCC------CCceeeeeecCCC-CCeEEEEeeeEEEecEEEeeCCCccccccC
Q 047238 241 IQGLFSYCLVREMEATSVIKFGRDA-DVRR------RDLETTPILLSDL-RPHFYLHLLEISIGRHIVRFPPGAFDIMRD 312 (446)
Q Consensus 241 ~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~------g~l~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 312 (446)
.+++|||||.+.....|.|+||+.+ .++. +.+.|+||+.++. ..+|.|+|++|+||++.+.+++..+.+...
T Consensus 148 ~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~ 227 (362)
T cd05489 148 VARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRL 227 (362)
T ss_pred CCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccccc
Confidence 3589999998754568999999998 5553 7899999998653 379999999999999999887766665555
Q ss_pred CCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCC-----CCCcCeEEEEEcC--eEE
Q 047238 313 GTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSS-----FKAYPSMTFHLQE--ADY 385 (446)
Q Consensus 313 ~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-----~~~~p~i~~~f~g--~~~ 385 (446)
+.+++||||||++++||+++|++|.+++.+++......... ......|+..... ...+|.|+|+|+| ++|
T Consensus 228 ~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~ 304 (362)
T cd05489 228 GPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAA---AVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNW 304 (362)
T ss_pred CCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCC---CCCcCccccCCCcCCcccccccceEEEEEeCCCeEE
Confidence 66789999999999999999999999999887532111110 1122689874321 2479999999986 999
Q ss_pred EEcCCCeEEEEcCCCceEEEEEcCC----CceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 386 IVQPENMYFIEPDRGRFCVAIQDDP----KYSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 386 ~l~~~~~y~~~~~~~~~C~~~~~~~----~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
+|++++ |+++..++..|+++++.+ +.||||+.|||++|++||++++|||||+.
T Consensus 305 ~l~~~n-y~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGAN-SMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCc-eEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999 999877777899987643 47899999999999999999999999974
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.2e-52 Score=417.37 Aligned_cols=315 Identities=17% Similarity=0.253 Sum_probs=241.6
Q ss_pred ccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeee
Q 047238 95 LFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRY 174 (446)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y 174 (446)
..|+++|.||||+|+|.|+|||||+++||+|..|. ..++.|||++|+|++..+ |.|++.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~~----------------~~~~i~Y 61 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDLG----------------KGVTVPY 61 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccCC----------------ceEEEEE
Confidence 36999999999999999999999999999998773 357789999999999987 7899999
Q ss_pred CCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCC--CcceeEecCCCCCc--------hhHhhhhh--cc
Q 047238 175 HVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGG--KISGILGFNASPLS--------LSSQLRNR--IQ 242 (446)
Q Consensus 175 ~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~--~~~GIlGLg~~~~s--------~~~Ql~~~--~~ 242 (446)
++|+ +.|.+++|+|+|++.. ... -.+.|+++....+ .+.. ..+||||||++.++ +..+|.++ ..
T Consensus 62 g~Gs-~~G~~~~D~v~ig~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~ 137 (364)
T cd05473 62 TQGS-WEGELGTDLVSIPKGP-NVT-FRANIAAITESEN-FFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIP 137 (364)
T ss_pred Ccce-EEEEEEEEEEEECCCC-ccc-eEEeeEEEecccc-ceecccccceeeeecccccccCCCCCCCHHHHHHhccCCc
Confidence 9998 8999999999998421 111 1234556655544 2222 57999999998653 23343322 35
Q ss_pred CceEEeeec---------CCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccC
Q 047238 243 GLFSYCLVR---------EMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRD 312 (446)
Q Consensus 243 ~~Fs~~l~~---------~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 312 (446)
++||+||.. .....|.|+|||+| .++.+++.|+|+.. ..+|.|.+++|+|+++.+..+...+.
T Consensus 138 ~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~---~~~~~v~l~~i~vg~~~~~~~~~~~~---- 210 (364)
T cd05473 138 DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE---EWYYEVIILKLEVGGQSLNLDCKEYN---- 210 (364)
T ss_pred cceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc---ceeEEEEEEEEEECCEeccccccccc----
Confidence 699998853 11347999999999 88999999999987 68999999999999998875433221
Q ss_pred CCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCC-CCCcCeEEEEEcC------eEE
Q 047238 313 GTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSS-FKAYPSMTFHLQE------ADY 385 (446)
Q Consensus 313 ~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~p~i~~~f~g------~~~ 385 (446)
...+||||||++++||++++++|.+++.+....+......+ ....++|+..... ...+|+|+|+|+| .++
T Consensus 211 -~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 211 -YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFW--LGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred -CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCcccc--CcceeecccccCchHhhCCcEEEEEccCCCCceEEE
Confidence 13699999999999999999999999988753221111100 1123689875321 1358999999975 378
Q ss_pred EEcCCCeEEEEcCC---CceEEEE--EcCCCceeechhhhceeEEEEECCCCEEEEEeCCCCCC
Q 047238 386 IVQPENMYFIEPDR---GRFCVAI--QDDPKYSILGAWQQQNMLIIYDLNVPALRFGSENCANG 444 (446)
Q Consensus 386 ~l~~~~~y~~~~~~---~~~C~~~--~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~~ 444 (446)
.|+|++ |+.+... +..|+.+ .+..+.||||+.|||++|+|||++++|||||+++|...
T Consensus 288 ~l~p~~-Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 288 TILPQL-YLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred EECHHH-hhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 999999 9986432 4679754 33345799999999999999999999999999999863
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.3e-51 Score=393.74 Aligned_cols=258 Identities=29% Similarity=0.567 Sum_probs=218.9
Q ss_pred ccEEEEEEECCCCceEEEEEEcCCCceeEeCC-CCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeee
Q 047238 95 LFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQ-PCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRR 173 (446)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~-~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~ 173 (446)
++|+++|.||||+|++.|+|||||+++||+|. .|..| . |.|.+.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~----------------c~~~i~ 45 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------Q----------------CDYEIE 45 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------c----------------CccEeE
Confidence 47999999999999999999999999999984 67666 2 679999
Q ss_pred eCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC---CCcceeEecCCCCCchhHhhhhh--ccCceEEe
Q 047238 174 YHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG---GKISGILGFNASPLSLSSQLRNR--IQGLFSYC 248 (446)
Q Consensus 174 Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~---~~~~GIlGLg~~~~s~~~Ql~~~--~~~~Fs~~ 248 (446)
|+|++.+.|.+++|+|+|+..+++..++++.|||+....+ .+. ...+||||||++..++++||..+ .+++||+|
T Consensus 46 Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~-~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~ 124 (273)
T cd05475 46 YADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQG-PLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHC 124 (273)
T ss_pred eCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCC-cccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEE
Confidence 9988779999999999998765566788999999987655 322 27899999999999999998753 46899999
Q ss_pred eecCCCCceeEEEccCCccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccc
Q 047238 249 LVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFI 328 (446)
Q Consensus 249 l~~~~~~~g~l~fGg~d~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~l 328 (446)
|++ ...|.|+||+. .++.+++.|+|+..++...+|.|++.+|+||++.+.. ....+||||||++++|
T Consensus 125 l~~--~~~g~l~~G~~-~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDTGTt~t~l 191 (273)
T cd05475 125 LSS--NGGGFLFFGDD-LVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGG----------KGLEVVFDSGSSYTYF 191 (273)
T ss_pred ccC--CCCeEEEECCC-CCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcC----------CCceEEEECCCceEEc
Confidence 987 45799999843 5567889999999865448999999999999984321 1257999999999999
Q ss_pred cchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcC----eEEEEcCCCeEEEEcCCCceEE
Q 047238 329 RNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQE----ADYIVQPENMYFIEPDRGRFCV 404 (446)
Q Consensus 329 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g----~~~~l~~~~~y~~~~~~~~~C~ 404 (446)
|+++| +|+|+|+|++ ++++||+++ |+++..++..|+
T Consensus 192 p~~~y---------------------------------------~p~i~~~f~~~~~~~~~~l~~~~-y~~~~~~~~~Cl 231 (273)
T cd05475 192 NAQAY---------------------------------------FKPLTLKFGKGWRTRLLEIPPEN-YLIISEKGNVCL 231 (273)
T ss_pred CCccc---------------------------------------cccEEEEECCCCceeEEEeCCCc-eEEEcCCCCEEE
Confidence 98765 3789999987 699999999 998866677899
Q ss_pred EEEcCC-----CceeechhhhceeEEEEECCCCEEEEEeCCC
Q 047238 405 AIQDDP-----KYSILGAWQQQNMLIIYDLNVPALRFGSENC 441 (446)
Q Consensus 405 ~~~~~~-----~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c 441 (446)
+++... +.||||+.|||++|+|||++++|||||+++|
T Consensus 232 ~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 232 GILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 886432 4799999999999999999999999999999
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.5e-51 Score=388.70 Aligned_cols=259 Identities=42% Similarity=0.731 Sum_probs=221.7
Q ss_pred cEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeC
Q 047238 96 FYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYH 175 (446)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~ 175 (446)
+|+++|+||||+|++.|+|||||+++||+| | .+.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~-------------------------------------~~~~~Y~ 38 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C-------------------------------------SYEYSYG 38 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C-------------------------------------ceEeEeC
Confidence 599999999999999999999999999975 1 3889999
Q ss_pred CCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCCCcceeEecCCCCCchhHhhhhhccCceEEeeecC--C
Q 047238 176 VGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVRE--M 253 (446)
Q Consensus 176 ~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~Ql~~~~~~~Fs~~l~~~--~ 253 (446)
||+.+.|.+++|+|+|++.+ ..++++.|||++...+ ......+||||||+...++++||.... ++||+||.+. .
T Consensus 39 dg~~~~G~~~~D~v~~g~~~--~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~~~~ 114 (265)
T cd05476 39 DGSSTSGVLATETFTFGDSS--VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHDDT 114 (265)
T ss_pred CCceeeeeEEEEEEEecCCC--CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCCCCC
Confidence 98889999999999999521 1789999999998875 324478999999999999999998443 6999999874 4
Q ss_pred CCceeEEEccCCccCCCCceeeeeecCCC-CCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchH
Q 047238 254 EATSVIKFGRDADVRRRDLETTPILLSDL-RPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGP 332 (446)
Q Consensus 254 ~~~g~l~fGg~d~~~~g~l~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 332 (446)
...|+|+|||+|..+.+++.|+|++.++. ..+|.|++++|+|+++.+.++...+.........+||||||++++||+++
T Consensus 115 ~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~ 194 (265)
T cd05476 115 GGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA 194 (265)
T ss_pred CCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc
Confidence 57899999999933899999999998642 37999999999999998876544333223344789999999999999765
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEc-CeEEEEcCCCeEEEEcCCCceEEEEEcC--
Q 047238 333 YQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQ-EADYIVQPENMYFIEPDRGRFCVAIQDD-- 409 (446)
Q Consensus 333 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~-g~~~~l~~~~~y~~~~~~~~~C~~~~~~-- 409 (446)
+ |.|+|+|+ |+++.+++++ |+++...+..|+++...
T Consensus 195 ~----------------------------------------P~i~~~f~~~~~~~i~~~~-y~~~~~~~~~C~~~~~~~~ 233 (265)
T cd05476 195 Y----------------------------------------PDLTLHFDGGADLELPPEN-YFVDVGEGVVCLAILSSSS 233 (265)
T ss_pred c----------------------------------------CCEEEEECCCCEEEeCccc-EEEECCCCCEEEEEecCCC
Confidence 5 67999999 7999999999 99976667889998765
Q ss_pred CCceeechhhhceeEEEEECCCCEEEEEeCCC
Q 047238 410 PKYSILGAWQQQNMLIIYDLNVPALRFGSENC 441 (446)
Q Consensus 410 ~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c 441 (446)
.+.||||++|||++|++||++++|||||+++|
T Consensus 234 ~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 234 GGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 46899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.6e-51 Score=390.86 Aligned_cols=265 Identities=21% Similarity=0.288 Sum_probs=221.7
Q ss_pred EEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeCC
Q 047238 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHV 176 (446)
Q Consensus 97 Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~~ 176 (446)
|+++|+||||+|++.|+|||||+++||+|..|..|.+..++.|++++|+|++... .|.+.+.|++
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~---------------~~~~~i~Y~~ 65 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP---------------GATWSISYGD 65 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC---------------CcEEEEEeCC
Confidence 8999999999999999999999999999999999988888999999999998753 2789999999
Q ss_pred CceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEecCCCCCch---------hHhhhhh-ccCc
Q 047238 177 GDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGFNASPLSL---------SSQLRNR-IQGL 244 (446)
Q Consensus 177 g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGLg~~~~s~---------~~Ql~~~-~~~~ 244 (446)
|+.+.|.+++|+|+|+ +..++++.||+++...+ ..+ ...+||||||++..+. ..+|.++ ..++
T Consensus 66 G~~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~ 140 (278)
T cd06097 66 GSSASGIVYTDTVSIG----GVEVPNQAIELATAVSA-SFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPL 140 (278)
T ss_pred CCeEEEEEEEEEEEEC----CEEECCeEEEEEeecCc-cccccccccceeeeccccccccccCCCCCHHHHHHHhccCce
Confidence 9879999999999999 57889999999998765 322 3799999999986543 3334322 3589
Q ss_pred eEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccC
Q 047238 245 FSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGT 323 (446)
Q Consensus 245 Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGT 323 (446)
||+||.+ ...|+|+|||+| .++.|++.|+|+... ..+|.|++++|+||++...... ...++|||||
T Consensus 141 Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~---------~~~~iiDSGT 207 (278)
T cd06097 141 FTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRS---------GFSAIADTGT 207 (278)
T ss_pred EEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC--CcEEEEEEeeEEECCcceeecC---------CceEEeecCC
Confidence 9999987 468999999999 889999999999863 4799999999999987433221 2579999999
Q ss_pred ccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcCCCceE
Q 047238 324 PVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFC 403 (446)
Q Consensus 324 t~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~~~~~C 403 (446)
+++++|++++++|.+++.+.. ..... ..+.++|.. .+|+|+|+|
T Consensus 208 s~~~lP~~~~~~l~~~l~g~~---~~~~~----~~~~~~C~~------~~P~i~f~~----------------------- 251 (278)
T cd06097 208 TLILLPDAIVEAYYSQVPGAY---YDSEY----GGWVFPCDT------TLPDLSFAV----------------------- 251 (278)
T ss_pred chhcCCHHHHHHHHHhCcCCc---ccCCC----CEEEEECCC------CCCCEEEEE-----------------------
Confidence 999999999999999884221 00111 223488985 379999998
Q ss_pred EEEEcCCCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 404 VAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 404 ~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.6e-49 Score=381.94 Aligned_cols=270 Identities=23% Similarity=0.322 Sum_probs=229.1
Q ss_pred cEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeC
Q 047238 96 FYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYH 175 (446)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~ 175 (446)
.|+++|.||||+|++.|+|||||+++||+ . |++.|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------~------------------~~~~Y~ 37 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------D------------------FSISYG 37 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------e------------------eEEEec
Confidence 69999999999999999999999999996 2 789999
Q ss_pred CCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCCCcceeEecCCCCC-----------chhHhhhhh---c
Q 047238 176 VGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPL-----------SLSSQLRNR---I 241 (446)
Q Consensus 176 ~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~Ql~~~---~ 241 (446)
+|+.+.|.+++|+|+|+ +..++++.|||++.... .+||||||+... +++.||.++ .
T Consensus 38 ~g~~~~G~~~~D~v~~g----~~~~~~~~fg~~~~~~~------~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~ 107 (295)
T cd05474 38 DGTSASGTWGTDTVSIG----GATVKNLQFAVANSTSS------DVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIK 107 (295)
T ss_pred cCCcEEEEEEEEEEEEC----CeEecceEEEEEecCCC------CcceeeECCCCCcccccCCCcCCCHHHHHHHCCccc
Confidence 97779999999999998 45788999999998544 789999999876 577887654 4
Q ss_pred cCceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCC---CCeEEEEeeeEEEecEEEeeCCCccccccCCCCcE
Q 047238 242 QGLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDL---RPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGF 317 (446)
Q Consensus 242 ~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ 317 (446)
+++||+||.+.+...|.|+|||+| .++.+++.|+|+...+. ..+|.|.+++|+++++.+..+.. .....+
T Consensus 108 ~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~~~~~~ 181 (295)
T cd05474 108 KNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------SKNLPA 181 (295)
T ss_pred ceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------CCCccE
Confidence 689999999855568999999999 88999999999998643 27999999999999987643111 223679
Q ss_pred EEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEc
Q 047238 318 IIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEP 397 (446)
Q Consensus 318 iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~ 397 (446)
+|||||++++||++++++|++++.+.... .. ..+..+|+... . |.|+|+|+|++++||+++ |+++.
T Consensus 182 iiDSGt~~~~lP~~~~~~l~~~~~~~~~~----~~----~~~~~~C~~~~----~-p~i~f~f~g~~~~i~~~~-~~~~~ 247 (295)
T cd05474 182 LLDSGTTLTYLPSDIVDAIAKQLGATYDS----DE----GLYVVDCDAKD----D-GSLTFNFGGATISVPLSD-LVLPA 247 (295)
T ss_pred EECCCCccEeCCHHHHHHHHHHhCCEEcC----CC----cEEEEeCCCCC----C-CEEEEEECCeEEEEEHHH-hEecc
Confidence 99999999999999999999999766431 11 33558999875 4 999999999999999999 89876
Q ss_pred CC----CceEE-EEEcCC-CceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 398 DR----GRFCV-AIQDDP-KYSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 398 ~~----~~~C~-~~~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
.. +..|+ .+.+.. +.||||++|||++|++||.+++|||||++
T Consensus 248 ~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 248 STDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 42 56795 666654 68999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=5.8e-50 Score=391.22 Aligned_cols=295 Identities=24% Similarity=0.395 Sum_probs=249.6
Q ss_pred cEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCC-CCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeee
Q 047238 96 FYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRC-FDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRY 174 (446)
Q Consensus 96 ~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C-~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y 174 (446)
+|+++|.||||+|+++|++||||+++||++..|..| .|.....|++++|+|++... +.+.+.|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------~~~~~~y 64 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------KPFSISY 64 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE----------------EEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce----------------eeeeeec
Confidence 599999999999999999999999999999999877 66788999999999999887 7899999
Q ss_pred CCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcC--CCCcceeEecCCCC-------CchhHhhhhh---cc
Q 047238 175 HVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAF--GGKISGILGFNASP-------LSLSSQLRNR---IQ 242 (446)
Q Consensus 175 ~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~~GIlGLg~~~-------~s~~~Ql~~~---~~ 242 (446)
++|+ +.|.+++|+|+|+ ++.++++.||++....+ .. ....+||||||++. .+++.||.++ ..
T Consensus 65 ~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~~~~~~~-~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~ 138 (317)
T PF00026_consen 65 GDGS-VSGNLVSDTVSIG----GLTIPNQTFGLADSYSG-DPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISS 138 (317)
T ss_dssp TTEE-EEEEEEEEEEEET----TEEEEEEEEEEEEEEES-HHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSS
T ss_pred cCcc-cccccccceEeee----eccccccceeccccccc-cccccccccccccccCCcccccccCCcceecchhhccccc
Confidence 9999 9999999999999 57888999999998644 21 23789999999753 3466676654 47
Q ss_pred CceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEec
Q 047238 243 GLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDT 321 (446)
Q Consensus 243 ~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDS 321 (446)
++||++|.+.....|.|+|||+| +++.++++|+|+.. ..+|.|.+++|.++++....... ..++|||
T Consensus 139 ~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~---~~~w~v~~~~i~i~~~~~~~~~~---------~~~~~Dt 206 (317)
T PF00026_consen 139 NVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS---SGYWSVPLDSISIGGESVFSSSG---------QQAILDT 206 (317)
T ss_dssp SEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS---TTTTEEEEEEEEETTEEEEEEEE---------EEEEEET
T ss_pred cccceeeeecccccchheeeccccccccCceeccCccc---ccccccccccccccccccccccc---------eeeeccc
Confidence 89999999965678999999999 88999999999995 78999999999999983322211 3599999
Q ss_pred cCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcCC--
Q 047238 322 GTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDR-- 399 (446)
Q Consensus 322 GTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~~-- 399 (446)
|+++++||.+++++|++.+.+.... ..+.++|...+ .+|.|+|.|++.+++||+++ |+.+...
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~----~~p~l~f~~~~~~~~i~~~~-~~~~~~~~~ 271 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTD----SLPDLTFTFGGVTFTIPPSD-YIFKIEDGN 271 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGG----GSEEEEEEETTEEEEEEHHH-HEEEESSTT
T ss_pred ccccccccchhhHHHHhhhcccccc----------eeEEEeccccc----ccceEEEeeCCEEEEecchH-hcccccccc
Confidence 9999999999999999999766321 12348999876 78999999999999999999 9998766
Q ss_pred CceEEE-EEc-----CCCceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 400 GRFCVA-IQD-----DPKYSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 400 ~~~C~~-~~~-----~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
...|+. +.. ..+.+|||.+|||++|+|||.+++|||||+|
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 348965 443 2258999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.1e-45 Score=354.96 Aligned_cols=268 Identities=28% Similarity=0.491 Sum_probs=226.5
Q ss_pred EEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCC--CCCCCCCccceecCCCCCCCCCCCCCCCCceeeeee
Q 047238 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPI--FDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRY 174 (446)
Q Consensus 97 Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~--f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y 174 (446)
|+++|.||||+|++.|+|||||+++||+|..|..|.++.... |++..|+++.... |.+.+.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~----------------~~~~~~Y 64 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG----------------CTFSITY 64 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC----------------CEEEEEE
Confidence 789999999999999999999999999999999887766665 7888888776655 8899999
Q ss_pred CCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC-CCcceeEecCCCC------CchhHhhhhh---ccCc
Q 047238 175 HVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG-GKISGILGFNASP------LSLSSQLRNR---IQGL 244 (446)
Q Consensus 175 ~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GIlGLg~~~------~s~~~Ql~~~---~~~~ 244 (446)
++|+ +.|.+++|+|+|++ ..++++.|||++.... ... ...+||||||+.. .+++.||.++ ..++
T Consensus 65 ~~g~-~~g~~~~D~v~~~~----~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~ 138 (283)
T cd05471 65 GDGS-VTGGLGTDTVTIGG----LTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPV 138 (283)
T ss_pred CCCe-EEEEEEEeEEEECC----EEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCE
Confidence 9987 99999999999994 5689999999998865 323 3799999999998 6789998764 4799
Q ss_pred eEEeeecC--CCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEec
Q 047238 245 FSYCLVRE--MEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDT 321 (446)
Q Consensus 245 Fs~~l~~~--~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDS 321 (446)
||+||.+. ....|.|+|||+| .++.+++.|+|++.. ...+|.|.+++|.|+++..... .....++|||
T Consensus 139 Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~iiDs 209 (283)
T cd05471 139 FSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISS--------SGGGGAIVDS 209 (283)
T ss_pred EEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceeeec--------CCCcEEEEec
Confidence 99999984 3579999999999 778999999999985 2489999999999998741111 1236799999
Q ss_pred cCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcCCCc
Q 047238 322 GTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGR 401 (446)
Q Consensus 322 GTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~~~~ 401 (446)
||++++||++++++|++++.+.... .. ......|.... .+|.|+|+|
T Consensus 210 Gt~~~~lp~~~~~~l~~~~~~~~~~----~~----~~~~~~~~~~~----~~p~i~f~f--------------------- 256 (283)
T cd05471 210 GTSLIYLPSSVYDAILKALGAAVSS----SD----GGYGVDCSPCD----TLPDITFTF--------------------- 256 (283)
T ss_pred CCCCEeCCHHHHHHHHHHhCCcccc----cC----CcEEEeCcccC----cCCCEEEEE---------------------
Confidence 9999999999999999999877432 11 12235566554 899999999
Q ss_pred eEEEEEcCCCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 402 FCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 402 ~C~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=3.3e-30 Score=226.46 Aligned_cols=156 Identities=42% Similarity=0.794 Sum_probs=128.2
Q ss_pred EEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCC-C---CCC--CCCCcee
Q 047238 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRS-P---FKC--QNGKCVY 170 (446)
Q Consensus 97 Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~---~~C--~~~~~~~ 170 (446)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.+.|.+++|.. + ..| .++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999998 5789999999999999999999986 2 223 3678999
Q ss_pred eeeeCCCceEEEEEEEEEEEeecCCC-ccccccEEEEeeecCCCCcCCCCcceeEecCCCCCchhHhhhhhccCceEEee
Q 047238 171 TRRYHVGDVTRGLASRETFAFPVRNG-FTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCL 249 (446)
Q Consensus 171 ~~~Y~~g~~~~G~~~~D~v~l~~~~~-~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~Ql~~~~~~~Fs~~l 249 (446)
.+.|++++.+.|.+++|+|+++..++ ...+.++.|||+....+ . +...+||||||+.+.|+++||.+...++|||||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-~-~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-L-FYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-S-STTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc-C-CcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 99999999999999999999997532 25778999999999887 4 348999999999999999999655699999999
Q ss_pred ec-CCCCceeEEEcc
Q 047238 250 VR-EMEATSVIKFGR 263 (446)
Q Consensus 250 ~~-~~~~~g~l~fGg 263 (446)
.+ .....|.|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 668899999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=1.2e-25 Score=197.39 Aligned_cols=148 Identities=34% Similarity=0.706 Sum_probs=120.7
Q ss_pred eEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCC---CCCCCCCCCCCc
Q 047238 285 HFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGR---QRIPYNASQEFD 361 (446)
Q Consensus 285 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~ 361 (446)
+|.|+|++|+||++++.++...|+. .++.++++|||||++++||+++|++|.+++.+++..... ... ...+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~----~~~~~ 75 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPP----FSGFD 75 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE-------TT-S
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhccccccccc----CCCCC
Confidence 5899999999999999999998877 777899999999999999999999999999999865431 122 45668
Q ss_pred cccccCC-----CCCCcCeEEEEEc-CeEEEEcCCCeEEEEcCCCceEEEEEcC----CCceeechhhhceeEEEEECCC
Q 047238 362 YCYRYDS-----SFKAYPSMTFHLQ-EADYIVQPENMYFIEPDRGRFCVAIQDD----PKYSILGAWQQQNMLIIYDLNV 431 (446)
Q Consensus 362 ~C~~~~~-----~~~~~p~i~~~f~-g~~~~l~~~~~y~~~~~~~~~C~~~~~~----~~~~ilG~~fl~~~y~vfD~~~ 431 (446)
.|++.+. ....+|+|+|+|. |++++|++++ |+++..++..|+++.++ .+..|||+.+|++++++||+++
T Consensus 76 ~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~-y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~ 154 (161)
T PF14541_consen 76 LCYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPEN-YFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLEN 154 (161)
T ss_dssp -EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHH-HEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTT
T ss_pred ceeeccccccccccccCCeEEEEEeCCcceeeeccc-eeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCC
Confidence 9999987 2578999999999 6999999999 99998888999998766 3689999999999999999999
Q ss_pred CEEEEEe
Q 047238 432 PALRFGS 438 (446)
Q Consensus 432 ~riGfa~ 438 (446)
+||||+|
T Consensus 155 ~~igF~~ 161 (161)
T PF14541_consen 155 GRIGFAP 161 (161)
T ss_dssp TEEEEEE
T ss_pred CEEEEeC
Confidence 9999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=8.5e-24 Score=173.30 Aligned_cols=106 Identities=35% Similarity=0.565 Sum_probs=95.2
Q ss_pred EEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCC-CCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeCCC
Q 047238 99 VEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIF-DPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVG 177 (446)
Q Consensus 99 ~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f-~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~~g 177 (446)
++|.||||+|++.|+|||||+++||+|..|..|.+..++.| +++.|++++... |.|.+.|++|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~----------------~~~~~~Y~~g 64 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG----------------CTFSITYGTG 64 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC----------------cEEEEEeCCC
Confidence 47999999999999999999999999999998887777777 999999998877 7899999999
Q ss_pred ceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCC--CCcceeEec
Q 047238 178 DVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFG--GKISGILGF 226 (446)
Q Consensus 178 ~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GIlGL 226 (446)
+ +.|.+++|+|+|+ +..++++.|||++...+ .++ ...+|||||
T Consensus 65 ~-~~g~~~~D~v~ig----~~~~~~~~fg~~~~~~~-~~~~~~~~~GilGL 109 (109)
T cd05470 65 S-LSGGLSTDTVSIG----DIEVVGQAFGCATDEPG-ATFLPALFDGILGL 109 (109)
T ss_pred e-EEEEEEEEEEEEC----CEEECCEEEEEEEecCC-ccccccccccccCC
Confidence 8 8899999999998 46789999999999877 433 378999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.06 E-value=1.3e-05 Score=63.25 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=66.4
Q ss_pred ccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeee
Q 047238 95 LFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRY 174 (446)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y 174 (446)
+.|++++.|| .+++.+++|||++.+|+.......+. . .. .. .....+..
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---~---------~~-~~----------------~~~~~~~~ 49 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---L---------PL-TL----------------GGKVTVQT 49 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---C---------Cc-cC----------------CCcEEEEe
Confidence 3589999999 89999999999999999664222220 0 00 00 03356777
Q ss_pred CCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCCCcceeEecCC
Q 047238 175 HVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNA 228 (446)
Q Consensus 175 ~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 228 (446)
.+|.........+.++++ +..++++.+........ ..+||||+.+
T Consensus 50 ~~G~~~~~~~~~~~i~ig----~~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 50 ANGRVRAARVRLDSLQIG----GITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred cCCCccceEEEcceEEEC----CcEEeccEEEEeCCccc-----CCceEeChHH
Confidence 788766666778999999 46777888877765442 4789999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.19 E-value=0.002 Score=53.41 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=65.9
Q ss_pred ccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCC
Q 047238 88 LPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNG 166 (446)
Q Consensus 88 ~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~ 166 (446)
+++. ..++.|++++.|. .+++.+++|||++.+-+....-... ..++.. ..
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~------~~--------------- 52 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR------LG--------------- 52 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc------CC---------------
Confidence 3445 4788999999998 7899999999999998854311111 011110 00
Q ss_pred CceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCCCcceeEecCC
Q 047238 167 KCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNA 228 (446)
Q Consensus 167 ~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 228 (446)
....+.=+.|......+.-|.+.+| +....++.+.+...... .+|+||+.+
T Consensus 53 -~~~~~~ta~G~~~~~~~~l~~l~iG----~~~~~nv~~~v~~~~~~------~~~LLGm~f 103 (121)
T TIGR02281 53 -YTVTVSTANGQIKAARVTLDRVAIG----GIVVNDVDAMVAEGGAL------SESLLGMSF 103 (121)
T ss_pred -ceEEEEeCCCcEEEEEEEeCEEEEC----CEEEeCcEEEEeCCCcC------CceEcCHHH
Confidence 1233444567644455678999999 57888888777654322 379999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.58 E-value=0.018 Score=44.44 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=53.8
Q ss_pred EEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeeeeCCCc
Q 047238 99 VEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGD 178 (446)
Q Consensus 99 ~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~Y~~g~ 178 (446)
+++.|+ .+++++++|||++.+.+......... ..+.... ....+.-.+|.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~----------------------~~~~~~~~~g~ 50 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPKS----------------------VPISVSGAGGS 50 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCCc----------------------eeEEEEeCCCC
Confidence 467788 78999999999998888544321110 0000000 11233334555
Q ss_pred eEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCCCcceeEecC
Q 047238 179 VTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFN 227 (446)
Q Consensus 179 ~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg 227 (446)
.......-+.++++ +..+.++.|-+..... ..+||||+-
T Consensus 51 ~~~~~~~~~~i~ig----~~~~~~~~~~v~~~~~------~~~~iLG~d 89 (90)
T PF13650_consen 51 VTVYRGRVDSITIG----GITLKNVPFLVVDLGD------PIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEEEEC----CEEEEeEEEEEECCCC------CCEEEeCCc
Confidence 44555666789998 4667777776666222 478999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.44 E-value=0.045 Score=45.49 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=52.2
Q ss_pred EEEeccCccccccchHHHHHHHHHHHHHhcc-CCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEE
Q 047238 317 FIIDTGTPVTFIRNGPYQTLMQRYDQILRSL-GRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFI 395 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~ 395 (446)
++||||.+.+.++++..+++--......... ...+. +-..|.. ......++++|..+.+ + +++
T Consensus 30 ~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~------g~~~~~g------~~~~~~l~i~~~~~~~---~-~~V 93 (124)
T cd05479 30 AFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGV------GTQKILG------RIHLAQVKIGNLFLPC---S-FTV 93 (124)
T ss_pred EEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecC------CCcEEEe------EEEEEEEEECCEEeee---E-EEE
Confidence 8999999999999988776432111000000 00000 0011110 2234455555544321 2 111
Q ss_pred EcCCCceEEEEEcC-CCceeechhhhceeEEEEECCCCEEEE
Q 047238 396 EPDRGRFCVAIQDD-PKYSILGAWQQQNMLIIYDLNVPALRF 436 (446)
Q Consensus 396 ~~~~~~~C~~~~~~-~~~~ilG~~fl~~~y~vfD~~~~riGf 436 (446)
.+. .-..|||..||+.+-.+.|..+++|-+
T Consensus 94 -----------l~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 94 -----------LEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred -----------ECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 121 235799999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.75 E-value=0.24 Score=41.09 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=57.3
Q ss_pred cCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceee-
Q 047238 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYT- 171 (446)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~- 171 (446)
....+++++.|+ ++++.+++|||++.+++....+..+.... ... ..+.
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~~------~~~-----------------------~~~~~ 61 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLMR------LID-----------------------KRFQG 61 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCcc------ccC-----------------------cceEE
Confidence 455789999999 89999999999999999655333331110 000 1121
Q ss_pred eeeC-CCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCCCcceeEecCC
Q 047238 172 RRYH-VGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNA 228 (446)
Q Consensus 172 ~~Y~-~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 228 (446)
...+ ++....|....+.+.+++ ...+ ..|.+.... ..|+|||+-+
T Consensus 62 ~~~g~g~~~~~g~~~~~~l~i~~----~~~~-~~~~Vl~~~-------~~d~ILG~d~ 107 (124)
T cd05479 62 IAKGVGTQKILGRIHLAQVKIGN----LFLP-CSFTVLEDD-------DVDFLIGLDM 107 (124)
T ss_pred EEecCCCcEEEeEEEEEEEEECC----EEee-eEEEEECCC-------CcCEEecHHH
Confidence 2222 233456777778888884 3332 555544322 3789999853
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=94.14 E-value=0.88 Score=44.38 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=33.1
Q ss_pred eeeCCCceEEEEEEEEEEEeecCCCccccccEEEEee----------ecCCCC--cCCCCcceeEecCCCC
Q 047238 172 RRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCS----------NDNSGF--AFGGKISGILGFNASP 230 (446)
Q Consensus 172 ~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~----------~~~~~~--~~~~~~~GIlGLg~~~ 230 (446)
..|++|. .=|-+.+-.|+|+++.. ..++-|.++-. ...... .....++||||+|.-.
T Consensus 82 ~~F~sgy-tWGsVr~AdV~igge~A-~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 82 AQFASGY-TWGSVRTADVTIGGETA-SSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hhccCcc-cccceEEEEEEEcCeec-cccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 4677777 66888889999997421 24444444321 111000 1012689999998754
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.43 E-value=0.17 Score=42.68 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=56.1
Q ss_pred cEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEE
Q 047238 316 GFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFI 395 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~ 395 (446)
.++||||.|-.++..+...++--.+...-. +..-.. .+....|.. ..+.+.+.++|..+. .+.++.
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l~~-~~~V~~----~g~~~~~~~------~~~~~~~~i~g~~~~---~dl~vl 99 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPLPR-PIVVSA----PGGSINCEG------VCPDVPLSIQGHEFV---VDLLVL 99 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEccC-eeEEec----ccccccccc------eeeeEEEEECCeEEE---eeeEEe
Confidence 389999999999887766543321111100 000000 111122221 345666666665442 220111
Q ss_pred EcCCCceEEEEEcCCCceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 396 EPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 396 ~~~~~~~C~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
+. .+-..|||.++|+.+..+-|..+++|-|...
T Consensus 100 ~l-----------~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 100 DL-----------GGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred cc-----------cceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 11 1125899999999999999999999999753
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.57 E-value=0.14 Score=39.87 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred EEEEEEECCCCceEEEEEEcCCCceeEeCCC
Q 047238 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQP 127 (446)
Q Consensus 97 Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~ 127 (446)
|++++.|+ .+++.+++||||+..++..+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 899999999999999996543
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=92.40 E-value=0.4 Score=42.70 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=58.9
Q ss_pred ccccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCC
Q 047238 86 IHLPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQ 164 (446)
Q Consensus 86 ~~~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~ 164 (446)
.++.|. ..+|.|.++..|- .|++.+++|||-+.+-+....- ..-.|+.+...
T Consensus 94 ~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA------~RlGid~~~l~------------------- 146 (215)
T COG3577 94 QEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDA------RRLGIDLNSLD------------------- 146 (215)
T ss_pred eEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHH------HHhCCCccccC-------------------
Confidence 456666 6899999999999 9999999999999988865421 11123333211
Q ss_pred CCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEE
Q 047238 165 NGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLA 204 (446)
Q Consensus 165 ~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~ 204 (446)
..+.+.-.+|......+--|.|.||+ +...++.
T Consensus 147 ---y~~~v~TANG~~~AA~V~Ld~v~IG~----I~~~nV~ 179 (215)
T COG3577 147 ---YTITVSTANGRARAAPVTLDRVQIGG----IRVKNVD 179 (215)
T ss_pred ---CceEEEccCCccccceEEeeeEEEcc----EEEcCch
Confidence 34556667888555678889999994 4544443
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.44 E-value=0.58 Score=34.63 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=29.5
Q ss_pred cCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCC
Q 047238 93 QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC 128 (446)
Q Consensus 93 ~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C 128 (446)
..+.+++++.|| ++.+.+++|||++...|+...+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 457899999999 7999999999999999876544
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=87.25 E-value=1.4 Score=36.36 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=27.5
Q ss_pred CeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHH
Q 047238 284 PHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 284 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 336 (446)
++|.++ +.|||+.+. ++||||.+.+.+++++.+++
T Consensus 10 g~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 666654 567887543 89999999999999888765
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=86.04 E-value=1.8 Score=37.21 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=18.2
Q ss_pred cEEEeccCccccccchHHHHHH
Q 047238 316 GFIIDTGTPVTFIRNGPYQTLM 337 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~~~l~ 337 (446)
.++||||++..+.-.++.+.|-
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 3899999999998887776653
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=85.79 E-value=1.1 Score=35.17 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.7
Q ss_pred EEEEEECCCCceEEEEEEcCCCceeEeCC
Q 047238 98 SVEVNIGTPMKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 98 ~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
+.+|.|. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 6788888 88999999999999999665
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=84.48 E-value=1.6 Score=35.06 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.9
Q ss_pred CceeechhhhceeEEEEECCCCEE
Q 047238 411 KYSILGAWQQQNMLIIYDLNVPAL 434 (446)
Q Consensus 411 ~~~ilG~~fl~~~y~vfD~~~~ri 434 (446)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987753
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.45 E-value=1.1 Score=34.09 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.1
Q ss_pred EEEeccCccccccchHHHHH
Q 047238 317 FIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l 336 (446)
++||||.+.+.+.++.++++
T Consensus 12 ~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 12 FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEcCCCCcEEECHHHHHHc
Confidence 89999999999998888776
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.33 E-value=2.3 Score=31.43 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=18.8
Q ss_pred EEEeccCccccccchHHHHH
Q 047238 317 FIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l 336 (446)
+++|||.+..+++.+..+++
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 89999999999999988887
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.17 E-value=1.2 Score=35.05 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=7.3
Q ss_pred CCcccchhHHHHHH
Q 047238 1 MAHVQALPLAAFFS 14 (446)
Q Consensus 1 m~~~~~~~~~~l~~ 14 (446)
|+ |+.++++.|+|
T Consensus 1 Ma-SK~~llL~l~L 13 (95)
T PF07172_consen 1 MA-SKAFLLLGLLL 13 (95)
T ss_pred Cc-hhHHHHHHHHH
Confidence 88 66654444433
No 44
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=80.55 E-value=1.9 Score=33.34 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=25.9
Q ss_pred eEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHHH
Q 047238 292 EISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLM 337 (446)
Q Consensus 292 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~ 337 (446)
.+.|+|+.+. +.+|||++.+.++++.+.++-
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHhC
Confidence 3678888765 899999999999999888764
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=78.07 E-value=3.3 Score=31.82 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.8
Q ss_pred EEEeccCccccccchHHHHH
Q 047238 317 FIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l 336 (446)
++||||++.+.++.+..+++
T Consensus 16 ~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 16 FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCCCcEEcCHHHHHHc
Confidence 89999999999998877665
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.66 E-value=3 Score=32.14 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=21.4
Q ss_pred EEEECCCCceEEEEEEcCCCceeEeCC
Q 047238 100 EVNIGTPMKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 100 ~i~iGtP~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
++.|+ .|.+++++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46777 89999999999999999643
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.86 E-value=3 Score=31.93 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.3
Q ss_pred EEEECCCCceEEEEEEcCCCceeEeCC
Q 047238 100 EVNIGTPMKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 100 ~i~iGtP~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
.+.|. .+++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 46676 89999999999999999654
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=74.29 E-value=3.6 Score=31.50 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEEeccCccccccchHHHHH
Q 047238 317 FIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~~~l 336 (446)
+++|||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 89999999999999988876
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=72.11 E-value=8.1 Score=34.71 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=51.6
Q ss_pred cEEEeccCccccccchHH-HHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEE
Q 047238 316 GFIIDTGTPVTFIRNGPY-QTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYF 394 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~ 394 (446)
.++||||.+.-.....+. +.+++.....+....+++. ...= ....+.+.+.++|..|.+| ++
T Consensus 22 ~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an~~-------~~~i------~~~~~~~~i~I~~~~F~IP----~i 84 (201)
T PF02160_consen 22 HCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGANGS-------IIQI------NKKAKNGKIQIADKIFRIP----TI 84 (201)
T ss_pred EEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEecCC-------ceEE------EEEecCceEEEccEEEecc----EE
Confidence 489999999988776655 3333332211111111110 0000 0134555666666655554 22
Q ss_pred EEcCCCceEEEEEcCCCceeechhhhceeEEEEECCCCEEEEEe
Q 047238 395 IEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGS 438 (446)
Q Consensus 395 ~~~~~~~~C~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 438 (446)
++ +.++-..|||..|+|.|+=....+ .+|-|..
T Consensus 85 Yq----------~~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 85 YQ----------QESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EE----------ecCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 21 123447899999999887666665 4677764
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=66.71 E-value=5.7 Score=31.05 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.9
Q ss_pred EEEeccCccccccchHH
Q 047238 317 FIIDTGTPVTFIRNGPY 333 (446)
Q Consensus 317 ~iiDSGTt~~~lp~~~~ 333 (446)
++||||...+.++.+.+
T Consensus 19 ~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 19 ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTBSSEEESSGGS
T ss_pred EEEecCCCcceeccccc
Confidence 99999999999997644
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=63.44 E-value=9.7 Score=32.87 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.7
Q ss_pred EEEEEEECCCCceEEEEEEcCCCceeEeCC
Q 047238 97 YSVEVNIGTPMKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 97 Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
=...+.+++...+++++|||||....+...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 345566666689999999999999988653
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=59.17 E-value=25 Score=31.65 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=31.7
Q ss_pred eeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHH
Q 047238 274 TTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 274 ~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 336 (446)
.+-+.+.. +++|.+ ...|||+.+. .++|||.|.+.++++..+++
T Consensus 95 ~v~Lak~~-~GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 95 EVSLAKSR-DGHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEEEecC-CCcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 44444433 355554 4679999886 89999999999998877654
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=54.60 E-value=12 Score=29.08 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.4
Q ss_pred cEEEeccCccccccchHHHHHH
Q 047238 316 GFIIDTGTPVTFIRNGPYQTLM 337 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~~~l~ 337 (446)
.+.+|||.+...+|...++++.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999988887765
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=50.19 E-value=17 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=22.8
Q ss_pred EEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHH
Q 047238 293 ISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTL 336 (446)
Q Consensus 293 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 336 (446)
+++||+.+. |+||||+-.+.++.+..+++
T Consensus 29 ~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 678888775 99999999999998888774
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.34 E-value=10 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=25.5
Q ss_pred CccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCC
Q 047238 94 DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRC 131 (446)
Q Consensus 94 ~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C 131 (446)
...+|++++|+ .+++++++|||...+-+...-+..|
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 44689999999 8999999999999998866544555
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.98 E-value=12 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=19.4
Q ss_pred EEEeccCc-cccccchHHHHHHHH
Q 047238 317 FIIDTGTP-VTFIRNGPYQTLMQR 339 (446)
Q Consensus 317 ~iiDSGTt-~~~lp~~~~~~l~~~ 339 (446)
.+||||-+ ++.+|+++++++-.-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~~ 52 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGLP 52 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCCC
Confidence 58999999 999999999876433
No 57
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=39.04 E-value=28 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=15.3
Q ss_pred cEEEeccCccccccchHH
Q 047238 316 GFIIDTGTPVTFIRNGPY 333 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~ 333 (446)
.++||||++.++++.+..
T Consensus 13 ~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 13 NVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEEeCCCCCEEEeCCCC
Confidence 489999999999997643
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=36.64 E-value=27 Score=27.14 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.4
Q ss_pred EEECCCC-ceEEEEEEcCCCceeEeC
Q 047238 101 VNIGTPM-KPQHLLFDTASSLVWTQC 125 (446)
Q Consensus 101 i~iGtP~-Q~~~v~~DTGS~~~Wv~~ 125 (446)
+.|. . +++++.+|||++..-++-
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccH
Confidence 4555 5 899999999999887754
No 59
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=33.16 E-value=57 Score=30.77 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=23.5
Q ss_pred ccEEEE---EEECC---CCceEEEEEEcCCCceeEeCC
Q 047238 95 LFYSVE---VNIGT---PMKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 95 ~~Y~~~---i~iGt---P~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
..|.++ |.||. +.....++||||++++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567666 57873 234467999999999999754
No 60
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=31.33 E-value=60 Score=25.90 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=38.5
Q ss_pred EEEEECCCCc----eEEEEEEcCCCcee-EeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCCCCCCCCceeeee
Q 047238 99 VEVNIGTPMK----PQHLLFDTASSLVW-TQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRR 173 (446)
Q Consensus 99 ~~i~iGtP~Q----~~~v~~DTGS~~~W-v~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~C~~~~~~~~~~ 173 (446)
+++.|..|.| ++.+++|||.+..- ++...-. .. ...+. ....+.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-----~l-gl~~~-------------------------~~~~~~ 50 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-----KL-GLPEL-------------------------DQRRVY 50 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-----Hc-CCCcc-------------------------cCcEEE
Confidence 5778887732 67899999999664 5432100 00 01111 113455
Q ss_pred eCCCceEEEEEEEEEEEeec
Q 047238 174 YHVGDVTRGLASRETFAFPV 193 (446)
Q Consensus 174 Y~~g~~~~G~~~~D~v~l~~ 193 (446)
-++|....-....+++.+++
T Consensus 51 tA~G~~~~~~v~~~~v~igg 70 (107)
T TIGR03698 51 LADGREVLTDVAKASIIING 70 (107)
T ss_pred ecCCcEEEEEEEEEEEEECC
Confidence 56776566777888899984
No 61
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=30.29 E-value=2.3e+02 Score=27.93 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=29.2
Q ss_pred E-EEEEcCCC-ceeechhhhceeEEEEECCCCEEEEEeC
Q 047238 403 C-VAIQDDPK-YSILGAWQQQNMLIIYDLNVPALRFGSE 439 (446)
Q Consensus 403 C-~~~~~~~~-~~ilG~~fl~~~y~vfD~~~~riGfa~~ 439 (446)
| +.++...+ ...||...||.+--.-|++++++-|+..
T Consensus 308 c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 308 CSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred cceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 7 44555433 5789999999999999999998877753
No 62
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=28.13 E-value=78 Score=29.62 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=23.3
Q ss_pred CccEEEE---EEECCC-------------CceEEEEEEcCCCceeEeCC
Q 047238 94 DLFYSVE---VNIGTP-------------MKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 94 ~~~Y~~~---i~iGtP-------------~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
...|.++ |.||.- .....+++|||++++.++..
T Consensus 145 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 145 PTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 4567665 678741 22356899999999999754
No 63
>PLN02266 endoglucanase
Probab=25.39 E-value=88 Score=32.63 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCcccchhHHHHHHHHHHHHhhhhcccCCceeEEEEecCCCCC
Q 047238 1 MAHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPE 43 (446)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 43 (446)
|+.++.|+-+.+++.|.+++..-+..+. .-|.+||++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 41 (510)
T PLN02266 3 MALSSTLLRLFIFLAFSLLLCNGFSSSS----NNPFHHRHHPR 41 (510)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccc----CCcccccCCCC
Confidence 6667666555555555555555555433 34567888876
No 64
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=23.87 E-value=3.5e+02 Score=20.95 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.9
Q ss_pred ceEEEEEEcCCCceeEeCCCC
Q 047238 108 KPQHLLFDTASSLVWTQCQPC 128 (446)
Q Consensus 108 Q~~~v~~DTGS~~~Wv~~~~C 128 (446)
-...+++|||+...-+|...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 356899999999999986543
No 65
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=23.56 E-value=73 Score=29.71 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=26.3
Q ss_pred CccEEEE---EEECC-----CCceEEEEEEcCCCceeEeCCCC
Q 047238 94 DLFYSVE---VNIGT-----PMKPQHLLFDTASSLVWTQCQPC 128 (446)
Q Consensus 94 ~~~Y~~~---i~iGt-----P~Q~~~v~~DTGS~~~Wv~~~~C 128 (446)
...|.+. |.||. ......++||||++.+|+|...+
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 5667665 46664 24678999999999999987644
No 66
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.97 E-value=74 Score=30.00 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.9
Q ss_pred cEEEeccCccccccchH
Q 047238 316 GFIIDTGTPVTFIRNGP 332 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~ 332 (446)
.++||||++.+++|..-
T Consensus 15 ~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 15 NLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEeCCCCceeEeeCC
Confidence 38999999999999764
No 67
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=22.65 E-value=1.2e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.6
Q ss_pred ccEEEEEEECCCCceEEEEEEcCCCceeEeCC
Q 047238 95 LFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 95 ~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
..-.+.+.|. .++..+++|+|++...|...
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 3567788888 68999999999999988543
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.18 E-value=1.2e+02 Score=21.25 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.7
Q ss_pred cEEEeccCccccccchHHHH
Q 047238 316 GFIIDTGTPVTFIRNGPYQT 335 (446)
Q Consensus 316 ~~iiDSGTt~~~lp~~~~~~ 335 (446)
.+++|+|.+...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 38999999999888887654
No 69
>PLN03207 stomagen; Provisional
Probab=22.11 E-value=1.3e+02 Score=23.49 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhhc
Q 047238 9 LAAFFSYFSVLFLTHFT 25 (446)
Q Consensus 9 ~~~l~~~~~~~~~~~~~ 25 (446)
..++++++++++.+.+.
T Consensus 13 ~~lffLl~~llla~~v~ 29 (113)
T PLN03207 13 LTLFFLLFFLLLGAYVI 29 (113)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 70
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.73 E-value=97 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=23.3
Q ss_pred CccEEEE---EEECCC-----CceEEEEEEcCCCceeEeCC
Q 047238 94 DLFYSVE---VNIGTP-----MKPQHLLFDTASSLVWTQCQ 126 (446)
Q Consensus 94 ~~~Y~~~---i~iGtP-----~Q~~~v~~DTGS~~~Wv~~~ 126 (446)
...|.++ |.||.. .+...+++|||++.+++|..
T Consensus 187 ~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 187 KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 3456665 577742 23467999999999999764
Done!