Query 047239
Match_columns 180
No_of_seqs 148 out of 548
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytb_A Protein (tata binding p 100.0 1.5E-71 5.3E-76 445.4 23.3 177 1-177 3-179 (180)
2 3eik_A Tata-box-binding protei 100.0 3.1E-70 1.1E-74 447.7 24.0 178 1-178 41-218 (218)
3 1rm1_A Tata-box binding protei 100.0 9.6E-69 3.3E-73 445.1 23.4 178 1-178 63-240 (240)
4 2z8u_A Tata-box-binding protei 100.0 2.2E-67 7.6E-72 423.9 22.9 175 2-177 12-187 (188)
5 1ais_A TBP, protein (tata-bind 100.0 7.7E-67 2.6E-71 419.0 21.9 173 2-175 8-181 (182)
6 1mp9_A Tata-binding protein; t 100.0 1.9E-66 6.6E-71 421.3 23.2 176 2-178 12-188 (198)
7 1rm1_A Tata-box binding protei 100.0 3.3E-34 1.1E-38 237.8 11.0 123 49-176 25-147 (240)
8 2z8u_A Tata-box-binding protei 100.0 5.5E-30 1.9E-34 206.0 12.4 85 2-86 103-187 (188)
9 1mp9_A Tata-binding protein; t 100.0 1.5E-29 5.1E-34 204.9 11.6 86 2-87 103-188 (198)
10 1ais_A TBP, protein (tata-bind 100.0 2.1E-29 7E-34 201.8 10.7 83 2-84 99-181 (182)
11 1ytb_A Protein (tata binding p 100.0 3E-28 1E-32 194.6 10.7 84 92-176 4-87 (180)
12 3eik_A Tata-box-binding protei 99.9 1.7E-26 6E-31 188.8 11.7 83 2-84 132-215 (218)
13 3vn5_A RNAse HIII, ribonucleas 94.2 0.016 5.5E-07 48.0 1.7 38 34-71 25-62 (257)
14 2d0b_A RNAse HIII, ribonucleas 94.0 0.077 2.6E-06 45.0 5.6 36 35-70 27-62 (310)
15 3krm_A Insulin-like growth fac 93.5 1.2 4E-05 33.3 11.0 30 149-180 133-162 (163)
16 2d0b_A RNAse HIII, ribonucleas 92.8 0.1 3.5E-06 44.2 4.5 36 126-161 27-62 (310)
17 3vn5_A RNAse HIII, ribonucleas 92.8 0.059 2E-06 44.6 2.8 39 124-162 24-62 (257)
18 2jzx_A Poly(RC)-binding protei 82.1 12 0.0004 27.5 9.2 26 147-174 134-159 (160)
19 2av4_A Thioredoxin-like protei 75.5 1.5 5.2E-05 33.7 2.4 78 94-172 44-141 (160)
20 1t00_A Thioredoxin, TRX; redox 72.7 3.5 0.00012 27.5 3.6 29 141-169 80-110 (112)
21 2opv_A KHSRP protein; KH domai 71.9 5.9 0.0002 26.4 4.5 33 139-173 44-84 (85)
22 2trx_A Thioredoxin; electron t 70.6 6.9 0.00024 25.7 4.7 28 141-168 77-106 (108)
23 1dby_A Chloroplast thioredoxin 70.6 5 0.00017 26.4 3.9 28 141-168 76-105 (107)
24 3gnj_A Thioredoxin domain prot 69.6 8 0.00027 25.4 4.8 29 141-169 79-109 (111)
25 1fb6_A Thioredoxin M; electron 69.2 5.5 0.00019 25.9 3.9 28 141-168 75-104 (105)
26 2cte_A Vigilin; K homology typ 68.9 6.6 0.00023 26.8 4.3 31 147-179 59-89 (94)
27 1thx_A Thioredoxin, thioredoxi 68.2 6.3 0.00022 26.1 4.1 29 141-169 82-112 (115)
28 2o8v_B Thioredoxin 1; disulfid 68.1 7.7 0.00026 27.1 4.7 28 141-168 97-126 (128)
29 2e0q_A Thioredoxin; electron t 67.8 7.6 0.00026 24.9 4.3 29 141-169 72-102 (104)
30 1dby_A Chloroplast thioredoxin 67.6 8.6 0.00029 25.1 4.6 28 50-77 76-105 (107)
31 3gnj_A Thioredoxin domain prot 67.5 9.3 0.00032 25.1 4.8 29 50-78 79-109 (111)
32 1t00_A Thioredoxin, TRX; redox 67.3 6.9 0.00024 25.9 4.1 29 50-78 80-110 (112)
33 2trx_A Thioredoxin; electron t 66.8 9.2 0.00031 25.0 4.6 29 50-78 77-107 (108)
34 1w4v_A Thioredoxin, mitochondr 66.6 8.9 0.0003 26.1 4.7 28 141-168 88-117 (119)
35 2ctf_A Vigilin; K homology typ 66.4 7.8 0.00027 27.1 4.3 30 146-177 66-95 (102)
36 3tco_A Thioredoxin (TRXA-1); d 66.1 6.9 0.00024 25.5 3.9 29 50-78 78-108 (109)
37 3tco_A Thioredoxin (TRXA-1); d 65.3 7.4 0.00025 25.4 3.9 28 141-168 78-107 (109)
38 2i4a_A Thioredoxin; acidophIle 65.3 7.7 0.00026 25.3 4.0 27 141-167 77-105 (107)
39 2o8v_B Thioredoxin 1; disulfid 64.9 9.6 0.00033 26.6 4.6 29 50-78 97-127 (128)
40 1fb6_A Thioredoxin M; electron 64.5 10 0.00034 24.6 4.5 28 50-77 75-104 (105)
41 3hz4_A Thioredoxin; NYSGXRC, P 64.2 11 0.00037 26.6 4.8 33 141-173 81-115 (140)
42 1thx_A Thioredoxin, thioredoxi 64.1 11 0.00037 24.8 4.6 29 50-78 82-112 (115)
43 2yzu_A Thioredoxin; redox prot 63.9 5.1 0.00018 26.1 2.9 29 141-169 75-105 (109)
44 2jvf_A De novo protein M7; tet 63.8 11 0.00037 25.4 4.3 24 64-87 56-79 (96)
45 2es7_A Q8ZP25_salty, putative 63.7 8.4 0.00029 28.0 4.2 30 141-170 94-125 (142)
46 2ctm_A Vigilin; K homology typ 63.0 9.4 0.00032 26.2 4.1 37 139-177 47-88 (95)
47 2es7_A Q8ZP25_salty, putative 62.9 9 0.00031 27.8 4.3 29 50-78 94-124 (142)
48 1v98_A Thioredoxin; oxidoreduc 62.9 11 0.00038 26.3 4.7 29 141-169 107-137 (140)
49 2i4a_A Thioredoxin; acidophIle 62.4 9.2 0.00032 24.8 4.0 27 50-76 77-105 (107)
50 1w4v_A Thioredoxin, mitochondr 61.9 12 0.00042 25.3 4.6 29 50-78 88-118 (119)
51 2ctf_A Vigilin; K homology typ 61.5 12 0.0004 26.1 4.5 28 55-84 66-93 (102)
52 2e0q_A Thioredoxin; electron t 61.3 14 0.00047 23.6 4.6 29 50-78 72-102 (104)
53 3gix_A Thioredoxin-like protei 61.1 15 0.00053 26.4 5.3 33 141-173 80-124 (149)
54 1ep7_A Thioredoxin CH1, H-type 61.0 13 0.00044 24.4 4.6 28 141-169 81-110 (112)
55 3m9j_A Thioredoxin; oxidoreduc 60.7 9.6 0.00033 24.7 3.8 27 141-168 76-104 (105)
56 4euy_A Uncharacterized protein 60.5 6.3 0.00021 26.1 2.8 28 50-77 74-103 (105)
57 1kng_A Thiol:disulfide interch 60.4 11 0.00037 26.3 4.3 33 49-81 120-154 (156)
58 2qgv_A Hydrogenase-1 operon pr 60.0 13 0.00044 27.6 4.7 60 109-169 57-124 (140)
59 2j23_A Thioredoxin; immune pro 59.3 8.6 0.00029 26.3 3.5 27 141-168 91-119 (121)
60 3d22_A TRXH4, thioredoxin H-ty 59.3 14 0.00049 25.5 4.7 30 141-171 102-133 (139)
61 2ppt_A Thioredoxin-2; thiredox 59.1 13 0.00046 26.9 4.7 29 141-169 121-151 (155)
62 1ep7_A Thioredoxin CH1, H-type 58.9 15 0.0005 24.2 4.5 28 50-78 81-110 (112)
63 3qfa_C Thioredoxin; protein-pr 58.9 10 0.00035 25.7 3.8 27 141-168 87-115 (116)
64 3p2a_A Thioredoxin 2, putative 58.7 13 0.00043 26.3 4.4 30 141-170 112-143 (148)
65 1v98_A Thioredoxin; oxidoreduc 58.4 15 0.0005 25.6 4.6 29 50-78 107-137 (140)
66 1r26_A Thioredoxin; redox-acti 58.4 16 0.00054 25.4 4.8 28 141-169 93-122 (125)
67 3zzx_A Thioredoxin; oxidoreduc 57.8 13 0.00046 25.2 4.2 25 141-166 76-102 (105)
68 3m9j_A Thioredoxin; oxidoreduc 57.7 11 0.00039 24.3 3.8 27 50-77 76-104 (105)
69 1syr_A Thioredoxin; SGPP, stru 57.5 7.3 0.00025 26.1 2.8 27 141-168 82-110 (112)
70 2voc_A Thioredoxin; electron t 57.4 13 0.00046 24.8 4.2 26 141-166 74-101 (112)
71 3hz4_A Thioredoxin; NYSGXRC, P 57.3 17 0.00057 25.5 4.8 34 50-83 81-116 (140)
72 3qfa_C Thioredoxin; protein-pr 57.2 12 0.00041 25.4 3.9 27 50-77 87-115 (116)
73 2opv_A KHSRP protein; KH domai 56.9 14 0.00048 24.5 4.1 32 49-82 45-84 (85)
74 2yzu_A Thioredoxin; redox prot 56.4 8.2 0.00028 25.1 2.8 28 50-77 75-104 (109)
75 3gix_A Thioredoxin-like protei 56.4 19 0.00067 25.8 5.1 33 50-82 80-124 (149)
76 4euy_A Uncharacterized protein 55.6 8.6 0.0003 25.4 2.9 28 141-168 74-103 (105)
77 3p2a_A Thioredoxin 2, putative 55.6 14 0.00049 26.0 4.2 30 50-79 112-143 (148)
78 2vlu_A Thioredoxin, thioredoxi 55.4 14 0.00048 24.8 4.0 28 141-169 90-119 (122)
79 2pu9_C TRX-F, thioredoxin F-ty 54.9 19 0.00064 23.8 4.5 27 141-168 81-109 (111)
80 2ppt_A Thioredoxin-2; thiredox 54.6 17 0.0006 26.2 4.6 29 50-78 121-151 (155)
81 1nsw_A Thioredoxin, TRX; therm 54.5 6.6 0.00022 25.7 2.1 27 141-167 74-102 (105)
82 2axy_A Poly(RC)-binding protei 54.3 25 0.00084 22.6 4.9 34 139-174 35-72 (73)
83 2qgv_A Hydrogenase-1 operon pr 54.3 18 0.00061 26.8 4.6 29 50-78 94-124 (140)
84 2voc_A Thioredoxin; electron t 54.2 14 0.00047 24.7 3.8 26 50-75 74-101 (112)
85 1oaz_A Thioredoxin 1; immune s 54.1 6.7 0.00023 27.2 2.2 27 141-167 92-120 (123)
86 2qsi_A Putative hydrogenase ex 53.2 20 0.00067 26.4 4.7 30 140-169 91-122 (137)
87 3zzx_A Thioredoxin; oxidoreduc 53.0 18 0.0006 24.6 4.2 26 50-76 76-103 (105)
88 2b1k_A Thiol:disulfide interch 52.8 20 0.00068 25.5 4.7 34 49-82 128-163 (168)
89 2i1u_A Thioredoxin, TRX, MPT46 52.8 2.8 9.7E-05 28.3 -0.1 28 141-168 87-116 (121)
90 1faa_A Thioredoxin F; electron 52.4 19 0.00066 24.2 4.4 27 141-168 94-122 (124)
91 2kuc_A Putative disulphide-iso 52.3 22 0.00076 24.0 4.7 28 141-168 89-119 (130)
92 1kng_A Thiol:disulfide interch 52.1 21 0.00071 24.8 4.6 33 140-172 120-154 (156)
93 1syr_A Thioredoxin; SGPP, stru 51.7 10 0.00034 25.3 2.7 27 50-77 82-110 (112)
94 2oe3_A Thioredoxin-3; electron 51.6 12 0.0004 25.5 3.1 25 141-166 86-112 (114)
95 2j23_A Thioredoxin; immune pro 51.3 18 0.0006 24.6 4.0 27 50-77 91-119 (121)
96 3d22_A TRXH4, thioredoxin H-ty 51.2 23 0.00079 24.4 4.7 29 50-79 102-132 (139)
97 1x4m_A FAR upstream element bi 50.8 13 0.00044 25.3 3.1 36 139-176 45-88 (94)
98 2qsi_A Putative hydrogenase ex 50.8 26 0.00089 25.8 5.0 31 49-79 91-123 (137)
99 2hh2_A KH-type splicing regula 50.6 16 0.00054 25.5 3.7 27 148-176 55-81 (107)
100 1nsw_A Thioredoxin, TRX; therm 50.5 8.2 0.00028 25.1 2.1 27 50-76 74-102 (105)
101 2fwh_A Thiol:disulfide interch 50.5 7.2 0.00025 27.3 1.8 30 141-170 94-128 (134)
102 2p2r_A Poly(RC)-binding protei 50.1 25 0.00086 22.6 4.4 25 147-173 49-73 (76)
103 1r26_A Thioredoxin; redox-acti 50.1 26 0.00089 24.2 4.8 28 50-78 93-122 (125)
104 1oaz_A Thioredoxin 1; immune s 49.9 12 0.00042 25.8 3.0 27 50-76 92-120 (123)
105 2l6c_A Thioredoxin; oxidoreduc 49.8 13 0.00044 24.9 3.0 28 141-168 75-104 (110)
106 3emx_A Thioredoxin; structural 49.3 24 0.00083 24.5 4.6 29 50-78 95-125 (135)
107 3d6i_A Monothiol glutaredoxin- 48.1 30 0.001 22.6 4.7 30 141-171 79-110 (112)
108 2a4v_A Peroxiredoxin DOT5; yea 48.0 28 0.00096 24.7 4.8 36 140-176 120-157 (159)
109 2kuc_A Putative disulphide-iso 48.0 29 0.001 23.4 4.8 28 50-77 89-119 (130)
110 2xc2_A Thioredoxinn; oxidoredu 47.7 21 0.00071 23.8 3.9 27 141-168 88-116 (117)
111 2vlu_A Thioredoxin, thioredoxi 47.2 28 0.00095 23.2 4.5 28 50-78 90-119 (122)
112 2vim_A Thioredoxin, TRX; thior 46.9 23 0.00078 22.7 3.9 27 141-168 75-103 (104)
113 1xfl_A Thioredoxin H1; AT3G510 46.7 27 0.00092 23.9 4.4 27 141-168 94-122 (124)
114 2l57_A Uncharacterized protein 46.3 29 0.001 23.4 4.5 28 141-168 85-115 (126)
115 2o5a_A BH1328 protein; BHR21, 46.1 29 0.00099 25.2 4.6 29 59-88 38-66 (125)
116 2pu9_C TRX-F, thioredoxin F-ty 46.0 33 0.0011 22.5 4.6 27 50-77 81-109 (111)
117 2b1k_A Thiol:disulfide interch 45.9 27 0.00092 24.8 4.5 34 140-173 128-163 (168)
118 2l57_A Uncharacterized protein 45.7 32 0.0011 23.2 4.6 28 50-77 85-115 (126)
119 1zzk_A Heterogeneous nuclear r 45.5 39 0.0013 22.0 4.9 27 148-176 52-78 (82)
120 2av4_A Thioredoxin-like protei 45.5 27 0.00093 26.5 4.5 35 49-83 97-143 (160)
121 3die_A Thioredoxin, TRX; elect 44.9 16 0.00056 23.5 2.9 27 141-167 76-104 (106)
122 2oe3_A Thioredoxin-3; electron 44.7 17 0.00058 24.6 3.0 25 50-75 86-112 (114)
123 1faa_A Thioredoxin F; electron 44.7 30 0.001 23.2 4.3 27 50-77 94-122 (124)
124 2a4v_A Peroxiredoxin DOT5; yea 44.5 35 0.0012 24.1 4.9 35 49-84 120-156 (159)
125 1x5d_A Protein disulfide-isome 44.2 32 0.0011 23.2 4.5 30 141-170 86-117 (133)
126 2id1_A Hypothetical protein; a 44.2 32 0.0011 25.2 4.6 28 59-87 38-65 (130)
127 3emx_A Thioredoxin; structural 44.1 25 0.00085 24.5 3.9 30 141-170 95-126 (135)
128 3uvt_A Thioredoxin domain-cont 43.9 27 0.00093 22.6 3.9 27 141-167 81-109 (111)
129 1j5k_A Heterogeneous nuclear r 43.6 37 0.0013 22.6 4.6 28 147-176 58-85 (89)
130 1zzo_A RV1677; thioredoxin fol 43.2 27 0.00093 23.3 3.9 29 141-169 104-134 (136)
131 3qou_A Protein YBBN; thioredox 43.2 18 0.00062 28.4 3.4 30 141-170 83-114 (287)
132 1xwb_A Thioredoxin; dimerizati 42.3 23 0.0008 22.7 3.3 26 141-167 77-104 (106)
133 2in3_A Hypothetical protein; D 41.8 31 0.0011 25.8 4.4 31 140-170 178-210 (216)
134 2ggt_A SCO1 protein homolog, m 41.8 45 0.0015 23.2 5.1 30 49-78 129-160 (164)
135 1ti3_A Thioredoxin H, PTTRXH1; 41.5 34 0.0012 22.2 4.2 28 141-169 82-111 (113)
136 1xfl_A Thioredoxin H1; AT3G510 41.5 35 0.0012 23.3 4.4 27 50-77 94-122 (124)
137 3uvt_A Thioredoxin domain-cont 41.2 30 0.001 22.3 3.8 27 50-76 81-109 (111)
138 1x4n_A FAR upstream element bi 40.5 58 0.002 21.7 5.2 28 148-177 60-87 (92)
139 1lu4_A Soluble secreted antige 40.5 25 0.00087 23.6 3.4 29 141-169 102-135 (136)
140 2l6c_A Thioredoxin; oxidoreduc 40.1 33 0.0011 22.7 3.9 27 50-76 75-103 (110)
141 2vm1_A Thioredoxin, thioredoxi 39.6 47 0.0016 21.7 4.6 28 141-169 84-113 (118)
142 2ctk_A Vigilin; K homology typ 39.4 33 0.0011 23.8 3.8 36 139-176 47-86 (104)
143 1zma_A Bacterocin transport ac 39.3 16 0.00053 24.6 2.1 25 141-165 90-116 (118)
144 1x5d_A Protein disulfide-isome 39.1 41 0.0014 22.6 4.3 30 50-79 86-117 (133)
145 2ctl_A Vigilin; K homology typ 39.0 35 0.0012 23.3 3.9 37 139-177 47-90 (97)
146 2in3_A Hypothetical protein; D 38.9 34 0.0012 25.6 4.2 30 50-79 179-210 (216)
147 2fwh_A Thiol:disulfide interch 38.9 15 0.00051 25.6 2.0 29 50-78 94-127 (134)
148 1nho_A Probable thioredoxin; b 38.8 33 0.0011 21.0 3.6 22 147-168 62-83 (85)
149 1zzo_A RV1677; thioredoxin fol 38.8 37 0.0013 22.6 4.0 29 50-78 104-134 (136)
150 2ggt_A SCO1 protein homolog, m 38.7 55 0.0019 22.8 5.1 35 139-176 128-164 (164)
151 3dml_A Putative uncharacterize 38.5 59 0.002 23.0 5.2 31 50-80 79-111 (116)
152 3kh7_A Thiol:disulfide interch 38.3 53 0.0018 23.8 5.1 34 49-82 135-170 (176)
153 1ec6_A RNA-binding protein NOV 37.9 59 0.002 21.3 4.8 27 147-175 50-76 (87)
154 1fo5_A Thioredoxin; disulfide 37.6 21 0.00071 22.0 2.4 22 147-168 63-84 (85)
155 1gh2_A Thioredoxin-like protei 37.6 36 0.0012 22.1 3.8 27 141-168 77-105 (107)
156 1dtj_A RNA-binding neurooncolo 37.6 42 0.0014 21.3 3.9 25 147-173 50-74 (76)
157 2hh3_A KH-type splicing regula 37.0 59 0.002 22.5 4.9 35 140-176 42-82 (106)
158 3f3q_A Thioredoxin-1; His TAG, 36.7 37 0.0013 22.4 3.8 27 50-77 80-108 (109)
159 2ctj_A Vigilin; K homology typ 35.9 31 0.0011 23.6 3.2 26 149-176 62-87 (95)
160 2ctm_A Vigilin; K homology typ 35.9 50 0.0017 22.4 4.3 35 48-84 47-86 (95)
161 2l5l_A Thioredoxin; structural 35.5 49 0.0017 22.7 4.4 29 50-78 95-125 (136)
162 1x4m_A FAR upstream element bi 35.5 24 0.00082 23.8 2.5 34 49-84 46-87 (94)
163 1lu4_A Soluble secreted antige 35.2 34 0.0012 22.9 3.4 29 50-78 103-135 (136)
164 2rli_A SCO2 protein homolog, m 34.8 62 0.0021 22.7 4.9 32 49-80 132-165 (171)
165 3h93_A Thiol:disulfide interch 34.0 57 0.002 23.9 4.7 28 56-83 159-188 (192)
166 2yj7_A LPBCA thioredoxin; oxid 40.1 8.7 0.0003 24.7 0.0 27 141-167 76-104 (106)
167 2l5l_A Thioredoxin; structural 33.7 44 0.0015 23.0 3.8 30 141-170 95-126 (136)
168 3or1_A Sulfite reductase alpha 33.7 70 0.0024 28.1 5.8 65 33-102 87-178 (437)
169 2jvz_A KH type-splicing, FAR u 33.1 56 0.0019 23.6 4.5 28 147-176 135-162 (164)
170 1qgv_A Spliceosomal protein U5 33.1 52 0.0018 23.2 4.2 31 142-172 81-123 (142)
171 3ups_A Iojap-like protein; PSI 33.0 42 0.0014 24.8 3.7 29 58-87 53-81 (136)
172 3kij_A Probable glutathione pe 32.9 42 0.0014 24.4 3.8 33 50-82 139-173 (180)
173 1xhk_A Putative protease LA ho 32.7 39 0.0013 25.8 3.6 35 57-95 39-84 (187)
174 3dml_A Putative uncharacterize 32.6 84 0.0029 22.1 5.2 32 140-171 78-111 (116)
175 2cte_A Vigilin; K homology typ 32.6 57 0.002 21.9 4.1 27 56-84 59-85 (94)
176 2dj1_A Protein disulfide-isome 32.5 53 0.0018 22.4 4.1 29 141-169 94-123 (140)
177 1vig_A Vigilin; RNA-binding pr 31.9 35 0.0012 21.7 2.8 31 139-171 35-69 (71)
178 3it4_B Arginine biosynthesis b 31.9 38 0.0013 26.9 3.4 21 59-79 89-109 (205)
179 3lwa_A Secreted thiol-disulfid 31.9 63 0.0022 23.2 4.6 31 49-79 149-181 (183)
180 2rli_A SCO2 protein homolog, m 31.5 68 0.0023 22.5 4.7 31 140-170 132-164 (171)
181 3qou_A Protein YBBN; thioredox 31.4 55 0.0019 25.5 4.5 28 50-77 83-112 (287)
182 3hz8_A Thiol:disulfide interch 30.1 45 0.0015 24.9 3.6 31 146-177 160-190 (193)
183 3dxb_A Thioredoxin N-terminall 29.9 64 0.0022 24.4 4.5 29 141-169 87-117 (222)
184 3apq_A DNAJ homolog subfamily 29.4 42 0.0014 25.2 3.3 30 141-170 171-202 (210)
185 1wvn_A Poly(RC)-binding protei 29.4 53 0.0018 21.3 3.4 27 147-175 50-76 (82)
186 3mm5_A Sulfite reductase, diss 29.2 99 0.0034 26.8 6.0 64 33-101 85-176 (418)
187 1we8_A Tudor and KH domain con 29.2 49 0.0017 22.7 3.3 26 147-174 61-86 (104)
188 3lwa_A Secreted thiol-disulfid 29.0 75 0.0026 22.8 4.6 30 140-169 149-180 (183)
189 3kij_A Probable glutathione pe 28.6 41 0.0014 24.4 3.1 34 141-174 139-174 (180)
190 1a8l_A Protein disulfide oxido 28.6 76 0.0026 23.6 4.7 117 50-168 81-224 (226)
191 4dvc_A Thiol:disulfide interch 28.5 41 0.0014 24.1 3.0 27 143-169 153-181 (184)
192 2znm_A Thiol:disulfide interch 28.5 59 0.002 23.7 4.0 30 54-83 155-184 (195)
193 3dxb_A Thioredoxin N-terminall 28.3 70 0.0024 24.2 4.5 29 50-78 87-117 (222)
194 2l5o_A Putative thioredoxin; s 28.1 60 0.002 22.3 3.8 30 141-170 110-141 (153)
195 3ul3_B Thioredoxin, thioredoxi 27.8 51 0.0017 22.3 3.3 26 50-75 99-126 (128)
196 1rre_A ATP-dependent protease 27.7 76 0.0026 24.5 4.6 34 55-89 36-73 (200)
197 1mek_A Protein disulfide isome 27.4 37 0.0013 22.1 2.4 27 141-167 84-114 (120)
198 4f9u_A CG32412; alpha/beta hyd 27.3 61 0.0021 26.2 4.1 34 70-103 31-74 (312)
199 1vra_B Arginine biosynthesis b 27.2 47 0.0016 26.5 3.3 21 59-79 95-115 (215)
200 2rem_A Disulfide oxidoreductas 27.0 81 0.0028 22.9 4.5 28 54-82 160-187 (193)
201 2v4i_B Glutamate N-acetyltrans 26.8 49 0.0017 26.4 3.3 20 59-78 88-107 (213)
202 2opa_A Probable tautomerase YW 26.7 1E+02 0.0035 18.1 5.7 31 59-89 5-36 (61)
203 3u27_C Microcompartments prote 26.7 75 0.0026 25.4 4.4 29 56-84 83-112 (220)
204 1a8l_A Protein disulfide oxido 26.6 67 0.0023 23.9 4.1 29 50-78 195-225 (226)
205 3u27_C Microcompartments prote 26.6 62 0.0021 25.9 3.9 29 147-175 83-112 (220)
206 2vup_A Glutathione peroxidase- 26.5 86 0.003 22.9 4.6 30 49-78 153-184 (190)
207 2hh3_A KH-type splicing regula 26.5 1.2E+02 0.004 20.9 5.0 34 49-84 42-81 (106)
208 2dbc_A PDCL2, unnamed protein 26.4 51 0.0017 22.9 3.1 28 141-168 83-119 (135)
209 3eyt_A Uncharacterized protein 26.3 1E+02 0.0035 21.2 4.8 30 49-78 120-151 (158)
210 3ia1_A THIO-disulfide isomeras 26.2 92 0.0031 21.3 4.5 29 49-77 112-142 (154)
211 2znm_A Thiol:disulfide interch 26.1 58 0.002 23.8 3.5 30 145-174 155-184 (195)
212 3nec_A Profilin, inflammatory 26.0 1.2E+02 0.0042 22.8 5.4 44 43-86 116-166 (166)
213 3ph9_A Anterior gradient prote 25.7 38 0.0013 24.8 2.3 37 141-177 103-149 (151)
214 2ctj_A Vigilin; K homology typ 25.5 59 0.002 22.1 3.2 34 49-84 49-86 (95)
215 3ha9_A Uncharacterized thiored 25.5 67 0.0023 22.5 3.7 29 141-169 134-163 (165)
216 2ctl_A Vigilin; K homology typ 25.5 95 0.0032 21.0 4.3 35 48-84 47-88 (97)
217 4evm_A Thioredoxin family prot 25.3 75 0.0026 20.8 3.7 28 141-168 107-137 (138)
218 1sen_A Thioredoxin-like protei 24.7 62 0.0021 23.4 3.4 32 141-172 106-150 (164)
219 2fgx_A Putative thioredoxin; N 24.7 55 0.0019 22.7 2.9 25 141-165 82-106 (107)
220 4ds1_A Dynein light chain 1, c 24.7 69 0.0024 22.0 3.4 24 30-57 74-97 (97)
221 3feu_A Putative lipoprotein; a 24.6 59 0.002 24.1 3.3 24 146-169 158-183 (185)
222 3h79_A Thioredoxin-like protei 24.6 74 0.0025 21.4 3.6 26 142-167 96-125 (127)
223 2rem_A Disulfide oxidoreductas 24.6 79 0.0027 22.9 4.0 26 145-171 160-185 (193)
224 3h93_A Thiol:disulfide interch 24.5 81 0.0028 23.0 4.1 26 147-172 159-186 (192)
225 3i96_A Ethanolamine utilizatio 24.3 93 0.0032 22.4 4.1 26 147-174 74-99 (119)
226 3krm_A Insulin-like growth fac 24.2 96 0.0033 22.4 4.4 34 49-84 116-157 (163)
227 3lor_A Thiol-disulfide isomera 24.2 1.2E+02 0.0042 20.7 4.9 30 49-78 123-154 (160)
228 2b5x_A YKUV protein, TRXY; thi 24.0 1.1E+02 0.0037 20.5 4.4 29 141-169 113-144 (148)
229 3iv4_A Putative oxidoreductase 23.8 57 0.002 23.1 2.9 25 49-73 83-110 (112)
230 1x5e_A Thioredoxin domain cont 23.7 67 0.0023 21.5 3.2 27 142-168 81-108 (126)
231 2wz9_A Glutaredoxin-3; protein 23.7 65 0.0022 22.7 3.3 28 141-169 88-117 (153)
232 2b7k_A SCO1 protein; metalloch 23.6 85 0.0029 23.3 4.1 44 129-172 136-181 (200)
233 2jvz_A KH type-splicing, FAR u 23.5 1.1E+02 0.0037 22.0 4.5 25 149-175 50-74 (164)
234 1whq_A RNA helicase A; double- 23.3 1.2E+02 0.0041 20.7 4.5 40 47-86 36-78 (99)
235 3nul_A Profilin I; cytoskeleto 23.3 1.8E+02 0.006 20.7 5.6 39 48-86 88-130 (130)
236 2ju5_A Thioredoxin disulfide i 23.2 1.1E+02 0.0037 21.6 4.5 29 50-78 119-151 (154)
237 3feu_A Putative lipoprotein; a 23.2 73 0.0025 23.6 3.6 24 55-78 158-183 (185)
238 3io0_A ETUB protein; tamdem re 23.1 87 0.003 25.2 4.1 29 147-175 82-110 (230)
239 3c4b_A Endoribonuclease dicer; 22.9 2.8E+02 0.0094 21.7 8.6 42 42-83 220-263 (265)
240 4fay_A Microcompartments prote 22.8 87 0.003 25.6 4.1 29 147-175 110-138 (258)
241 1acf_A Profilin I; protein bin 22.8 1.6E+02 0.0055 20.7 5.3 40 47-86 82-125 (125)
242 1ilo_A Conserved hypothetical 22.7 50 0.0017 19.9 2.2 18 147-164 57-75 (77)
243 3kjj_A NMB1025 protein; YJGF p 22.6 53 0.0018 23.5 2.6 37 52-88 29-65 (128)
244 2h30_A Thioredoxin, peptide me 22.6 38 0.0013 23.6 1.8 33 140-172 124-158 (164)
245 1otf_A 4-oxalocrotonate tautom 22.4 1.3E+02 0.0043 17.6 5.6 31 59-89 5-36 (62)
246 2pbd_P Profilin-1, profilin I; 22.4 1.3E+02 0.0043 21.8 4.7 36 51-86 100-139 (139)
247 3evi_A Phosducin-like protein 22.3 27 0.00091 24.5 0.9 37 50-86 76-114 (118)
248 3c7m_A Thiol:disulfide interch 22.2 78 0.0027 22.9 3.6 25 145-169 167-193 (195)
249 2v1m_A Glutathione peroxidase; 22.2 70 0.0024 22.3 3.2 30 49-78 135-166 (169)
250 3f9u_A Putative exported cytoc 22.1 72 0.0025 22.7 3.3 34 50-83 133-170 (172)
251 3kh7_A Thiol:disulfide interch 22.1 1.4E+02 0.0046 21.5 4.9 34 140-173 135-170 (176)
252 3iwl_A Copper transport protei 22.1 77 0.0026 19.0 3.0 23 145-167 35-57 (68)
253 1ypr_A Profilin; actin-binding 21.7 2E+02 0.0068 20.3 5.6 40 47-86 82-125 (125)
254 3ha9_A Uncharacterized thiored 21.7 1E+02 0.0036 21.4 4.1 30 49-78 133-163 (165)
255 3apq_A DNAJ homolog subfamily 21.4 80 0.0027 23.5 3.5 29 50-78 171-201 (210)
256 2anr_A Neuro-oncological ventr 21.4 1.2E+02 0.004 22.3 4.4 34 139-174 134-175 (178)
257 2l5o_A Putative thioredoxin; s 21.2 1.1E+02 0.0037 20.8 4.0 30 49-78 109-140 (153)
258 3raz_A Thioredoxin-related pro 20.9 1.1E+02 0.0037 21.0 4.0 30 49-78 108-139 (151)
259 4fuu_A Leucine aminopeptidase; 20.9 96 0.0033 25.1 4.1 34 70-103 47-90 (309)
260 2ctk_A Vigilin; K homology typ 20.8 1.1E+02 0.0036 21.0 3.8 34 49-84 48-85 (104)
261 3hz8_A Thiol:disulfide interch 20.7 1.2E+02 0.0042 22.3 4.5 27 55-82 160-186 (193)
262 1eej_A Thiol:disulfide interch 20.5 1.3E+02 0.0044 22.7 4.6 32 141-174 184-215 (216)
263 3cmi_A Peroxiredoxin HYR1; thi 20.5 66 0.0023 22.9 2.8 30 49-78 136-167 (171)
264 3io0_A ETUB protein; tamdem re 20.5 1.1E+02 0.0039 24.5 4.3 31 56-86 82-113 (230)
265 3iij_A Coilin-interacting nucl 20.5 88 0.003 22.4 3.5 32 147-178 146-177 (180)
266 3tqm_A Ribosome-associated fac 20.4 81 0.0028 21.1 3.0 35 48-83 49-83 (96)
267 2vqe_K 30S ribosomal protein S 20.4 87 0.003 22.8 3.4 50 37-86 25-77 (129)
268 3eyt_A Uncharacterized protein 20.3 1.7E+02 0.0057 20.0 4.9 30 140-169 120-151 (158)
269 1k1g_A SF1-BO isoform; splicin 20.3 1.7E+02 0.0057 21.1 4.9 27 147-174 73-99 (131)
270 3hrg_A Uncharacterized protein 20.2 2.8E+02 0.0096 22.0 6.8 83 39-126 162-245 (257)
271 3i96_A Ethanolamine utilizatio 20.1 1.3E+02 0.0045 21.6 4.2 30 56-87 74-104 (119)
272 2dj0_A Thioredoxin-related tra 20.1 8.3 0.00028 26.9 -2.3 35 50-84 90-126 (137)
No 1
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=1.5e-71 Score=445.39 Aligned_cols=177 Identities=70% Similarity=1.148 Sum_probs=174.3
Q ss_pred CCceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHH
Q 047239 1 MAPVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARI 80 (180)
Q Consensus 1 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~ 80 (180)
|.|+|+|||||++++++|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++
T Consensus 3 ~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~ 82 (180)
T 1ytb_A 3 IVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 82 (180)
T ss_dssp CCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHH
Q 047239 81 VQKIGFPVQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQ 160 (180)
Q Consensus 81 L~~~g~~~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~ 160 (180)
|+++|+++++.+|+|||||||+|++|+|||++||..|.++++||||+||||+||+.+|+++++||+||||+|||||+++|
T Consensus 83 L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~ 162 (180)
T 1ytb_A 83 IQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREE 162 (180)
T ss_dssp HHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHH
T ss_pred HHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 047239 161 IYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 161 ~~~a~~~i~~~L~~~~~ 177 (180)
+++|+++|+|+|.+||+
T Consensus 163 ~~~a~~~i~p~L~~~~~ 179 (180)
T 1ytb_A 163 IYQAFEAIYPVLSEFRK 179 (180)
T ss_dssp HHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999997
No 2
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=3.1e-70 Score=447.73 Aligned_cols=178 Identities=65% Similarity=1.070 Sum_probs=174.5
Q ss_pred CCceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHH
Q 047239 1 MAPVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARI 80 (180)
Q Consensus 1 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~ 80 (180)
+.|+|+||||+++++|+|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++
T Consensus 41 i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~ 120 (218)
T 3eik_A 41 IIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKI 120 (218)
T ss_dssp CSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHH
Q 047239 81 VQKIGFPVQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQ 160 (180)
Q Consensus 81 L~~~g~~~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~ 160 (180)
|+++|+++++.+|+|||||||||++|+|||++|+..++++++||||+||||+||+.+|++|++||+||||+|||||+++|
T Consensus 121 L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d 200 (218)
T 3eik_A 121 IHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDD 200 (218)
T ss_dssp HHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHH
T ss_pred HHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 047239 161 IYAAFNNIYPVLNVYVTY 178 (180)
Q Consensus 161 ~~~a~~~i~~~L~~~~~~ 178 (180)
+++|+++|+|+|.+|||.
T Consensus 201 ~~~A~~~I~p~L~~frk~ 218 (218)
T 3eik_A 201 IYQAFNNIYPVLIQHRKA 218 (218)
T ss_dssp HHHHHHHHHHHHHHTBC-
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999999984
No 3
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=9.6e-69 Score=445.11 Aligned_cols=178 Identities=70% Similarity=1.141 Sum_probs=174.4
Q ss_pred CCceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHH
Q 047239 1 MAPVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARI 80 (180)
Q Consensus 1 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~ 80 (180)
+.|+|+||||+++++|+|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++
T Consensus 63 ~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~ 142 (240)
T 1rm1_A 63 IVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 142 (240)
T ss_dssp CCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHH
Q 047239 81 VQKIGFPVQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQ 160 (180)
Q Consensus 81 L~~~g~~~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~ 160 (180)
|+++|+++++.+|+|||||||+|++|+|||++|+..|.++++||||+||||+||+.+|+++++||+||||+|||+|+++|
T Consensus 143 L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~ 222 (240)
T 1rm1_A 143 IQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREE 222 (240)
T ss_dssp HHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHH
T ss_pred HHHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 047239 161 IYAAFNNIYPVLNVYVTY 178 (180)
Q Consensus 161 ~~~a~~~i~~~L~~~~~~ 178 (180)
+++|+++|+|+|.+||+.
T Consensus 223 ~~~Ai~~i~p~L~~~~~~ 240 (240)
T 1rm1_A 223 IYQAFEAIYPVLSEFRKM 240 (240)
T ss_dssp HHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999973
No 4
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=2.2e-67 Score=423.86 Aligned_cols=175 Identities=37% Similarity=0.627 Sum_probs=163.4
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L 81 (180)
.++|+||||+++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++++|
T Consensus 12 ~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~L 91 (188)
T 2z8u_A 12 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKEL 91 (188)
T ss_dssp CCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-CcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHH
Q 047239 82 QKIGFP-VQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQ 160 (180)
Q Consensus 82 ~~~g~~-~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~ 160 (180)
+++|++ .++.+|+|+|||||++++++|||++|+.. .++++||||+||||+||+.+|++|++||+||||+||||||+++
T Consensus 92 ~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~ 170 (188)
T 2z8u_A 92 KDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALM-VEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEED 170 (188)
T ss_dssp HHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHH-STTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHH
T ss_pred HhcCCCccccCceEEEEEEEEEecCCccCHHHHHhh-CcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHH
Confidence 999998 58889999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 047239 161 IYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 161 ~~~a~~~i~~~L~~~~~ 177 (180)
++.|+++|+|+|.+|++
T Consensus 171 ~~~A~~~i~~~L~~~~~ 187 (188)
T 2z8u_A 171 AKRALKKILDTIKEVQE 187 (188)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999875
No 5
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=7.7e-67 Score=419.00 Aligned_cols=173 Identities=38% Similarity=0.592 Sum_probs=168.9
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L 81 (180)
.++|+||||+++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++++|
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~~L 87 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKL 87 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-CcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHH
Q 047239 82 QKIGFP-VQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQ 160 (180)
Q Consensus 82 ~~~g~~-~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~ 160 (180)
+++|++ .++.+|+|+|||||++++++|||++|+.. .++++||||+||||+||+.+|++|++||+||||+||||||+++
T Consensus 88 ~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~ 166 (182)
T 1ais_A 88 KSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALT-LPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEAD 166 (182)
T ss_dssp HHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHH-STTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHH
T ss_pred HHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhh-CCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHH
Confidence 999998 58889999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 047239 161 IYAAFNNIYPVLNVY 175 (180)
Q Consensus 161 ~~~a~~~i~~~L~~~ 175 (180)
++.|+++|+|+|.+|
T Consensus 167 ~~~a~~~i~~~L~~~ 181 (182)
T 1ais_A 167 AWEAVRKLLRELDKY 181 (182)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999886
No 6
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=1.9e-66 Score=421.35 Aligned_cols=176 Identities=40% Similarity=0.627 Sum_probs=171.2
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L 81 (180)
.++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++++|
T Consensus 12 ~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~~~L 91 (198)
T 1mp9_A 12 VVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTL 91 (198)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-CcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHH
Q 047239 82 QKIGFP-VQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQ 160 (180)
Q Consensus 82 ~~~g~~-~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~ 160 (180)
+++|++ .++.+|+|+|||||++++++|||++|+.. .++++||||+||||+||+.+|++|++||+||||+||||||+++
T Consensus 92 ~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~ 170 (198)
T 1mp9_A 92 KKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFL-LENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDE 170 (198)
T ss_dssp HHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHH-SSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHH
T ss_pred HHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhh-cCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHH
Confidence 999998 58889999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 047239 161 IYAAFNNIYPVLNVYVTY 178 (180)
Q Consensus 161 ~~~a~~~i~~~L~~~~~~ 178 (180)
++.|+++|+|+|.+++..
T Consensus 171 ~~~A~~~i~~~L~~~~~~ 188 (198)
T 1mp9_A 171 VHKAVKKIFDKLVELDCV 188 (198)
T ss_dssp HHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999999998753
No 7
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=3.3e-34 Score=237.82 Aligned_cols=123 Identities=27% Similarity=0.278 Sum_probs=83.2
Q ss_pred EEEEEecCCcEEEEccCCHHHHHHHHHHHHHHHHHcCCCCcccceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCC
Q 047239 49 TTALIFSSGKIVCTGAKSESQAKLAARKYARIVQKIGFPVQFKDFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELF 128 (180)
Q Consensus 49 ~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~~~~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~f 128 (180)
+--+=|+|||+++||++|.++++.++ +.++++|.+....+++|+||||+++++++|||++|+.. .++++||||+|
T Consensus 25 ~~~~~f~sGk~~~s~~~s~~~~~~~~----~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~-~~n~eYePe~F 99 (240)
T 1rm1_A 25 VWENQNRDGTKPATTFQSEEDIKRAA----PESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALH-ARNAEYNPKRF 99 (240)
T ss_dssp ----------------------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHH-BTTEEECTTTC
T ss_pred cccccCCCCcceecccccHHHHHHHH----HHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhh-CCCcEEcCccc
Confidence 33467999999999999988876665 55566666666668999999999999999999999975 88999999999
Q ss_pred ceeEEEecCCeEEEEEecCceEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 129 PGLIYRMKKPNVTMLIFLSGKVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 129 pgli~r~~~p~~t~lIF~sGkivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
|||+||+.+|+++++||+||||+||||||+++++.|+++++++|.++.
T Consensus 100 pgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg 147 (240)
T 1rm1_A 100 AAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIG 147 (240)
T ss_dssp SEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999998864
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=99.96 E-value=5.5e-30 Score=205.98 Aligned_cols=85 Identities=40% Similarity=0.598 Sum_probs=82.3
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L 81 (180)
.++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++.++|
T Consensus 103 ~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 103 EIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTI 182 (188)
T ss_dssp CCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCC
Q 047239 82 QKIGF 86 (180)
Q Consensus 82 ~~~g~ 86 (180)
+++|+
T Consensus 183 ~~~~~ 187 (188)
T 2z8u_A 183 KEVQE 187 (188)
T ss_dssp HHHC-
T ss_pred HHhcc
Confidence 99874
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=99.96 E-value=1.5e-29 Score=204.89 Aligned_cols=86 Identities=38% Similarity=0.550 Sum_probs=83.6
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L 81 (180)
.++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++.++|
T Consensus 103 ~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~L 182 (198)
T 1mp9_A 103 KIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKL 182 (198)
T ss_dssp EEEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC
Q 047239 82 QKIGFP 87 (180)
Q Consensus 82 ~~~g~~ 87 (180)
+++|+.
T Consensus 183 ~~~~~~ 188 (198)
T 1mp9_A 183 VELDCV 188 (198)
T ss_dssp HHTTCE
T ss_pred HHhCCC
Confidence 999874
No 10
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=99.96 E-value=2.1e-29 Score=201.77 Aligned_cols=83 Identities=45% Similarity=0.664 Sum_probs=80.3
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhCCCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHARNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L 81 (180)
.++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++.++|
T Consensus 99 ~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 99 QIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLREL 178 (182)
T ss_dssp EEEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc
Q 047239 82 QKI 84 (180)
Q Consensus 82 ~~~ 84 (180)
+++
T Consensus 179 ~~~ 181 (182)
T 1ais_A 179 DKY 181 (182)
T ss_dssp TTC
T ss_pred HHh
Confidence 764
No 11
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=99.95 E-value=3e-28 Score=194.63 Aligned_cols=84 Identities=30% Similarity=0.444 Sum_probs=80.5
Q ss_pred ceeeeeeEEEEecCcccchhhHhhhcCCCCccCCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHHHHHHHHHHHHH
Q 047239 92 DFKIQNIVGSCDVEFPIKLERLNGFHAMFSTYEPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQIYAAFNNIYPV 171 (180)
Q Consensus 92 ~~~i~NIva~~~~~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~~~~a~~~i~~~ 171 (180)
.++|+|||||++++++|||++||.. .++++||||+||||+||+.+|+++++||+||||+||||||+++++.|+++++++
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~-~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~ 82 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALH-ARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 82 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHH-SSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhh-CCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999974 899999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc
Q 047239 172 LNVYV 176 (180)
Q Consensus 172 L~~~~ 176 (180)
|.++-
T Consensus 83 L~~lg 87 (180)
T 1ytb_A 83 IQKIG 87 (180)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 98764
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=99.94 E-value=1.7e-26 Score=188.82 Aligned_cols=83 Identities=31% Similarity=0.444 Sum_probs=79.4
Q ss_pred CceEEEEEEEEEcCCccCHHHHHhhC-CCcEEcCCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHH
Q 047239 2 APVIQNIVATINLECKLDLKKIALHA-RNAEYNPSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARI 80 (180)
Q Consensus 2 ~~~I~NvVas~~l~~~ldL~~la~~~-~n~~YePe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~ 80 (180)
.++|+||||+++++++|||+.||... ++++||||+||||+||+.+|+++++||+||||+|||+||++|++.|++++.++
T Consensus 132 ~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~ 211 (218)
T 3eik_A 132 DFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPV 211 (218)
T ss_dssp EEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999764 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHc
Q 047239 81 VQKI 84 (180)
Q Consensus 81 L~~~ 84 (180)
|.++
T Consensus 212 L~~f 215 (218)
T 3eik_A 212 LIQH 215 (218)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 13
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=94.15 E-value=0.016 Score=48.05 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCccceEEEEecCCcEEEEEecCCcEEEEccCCHHHHH
Q 047239 34 PSRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQAK 71 (180)
Q Consensus 34 Pe~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~~ 71 (180)
+..=|+..++.+.+.+++.+|.|||++.+|...++.+.
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~ 62 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLK 62 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHH
Confidence 34457899999999999999999999999996655543
No 14
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=93.99 E-value=0.077 Score=44.97 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=31.0
Q ss_pred CccceEEEEecCCcEEEEEecCCcEEEEccCCHHHH
Q 047239 35 SRFSAVTMRIKEPKTTALIFSSGKIVCTGAKSESQA 70 (180)
Q Consensus 35 e~fpgli~r~~~P~~t~lIf~SGKivitGaks~~~~ 70 (180)
..-|+..|+.+.+.+++.+|.|||++.+|..+++.+
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 345899999999999999999999999998665444
No 15
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=93.50 E-value=1.2 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.056 Sum_probs=24.6
Q ss_pred eEEEEcccCHHHHHHHHHHHHHHHhhccccCC
Q 047239 149 KVVITGAKAREQIYAAFNNIYPVLNVYVTYDQ 180 (180)
Q Consensus 149 kivitGaks~~~~~~a~~~i~~~L~~~~~~~~ 180 (180)
.|.|+| +.+.+..|...|..++.+.+..+|
T Consensus 133 ~v~I~G--~~~~v~~A~~~I~~~i~~~~~~~~ 162 (163)
T 3krm_A 133 IVKIIG--HFYASQMAQRKIRDILAQVKQQHQ 162 (163)
T ss_dssp EEEEEE--CHHHHHHHHHHHHHHHHHHTC---
T ss_pred EEEEEe--CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999 578999999999999999998776
No 16
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=92.84 E-value=0.1 Score=44.24 Aligned_cols=36 Identities=31% Similarity=0.621 Sum_probs=31.0
Q ss_pred cCCceeEEEecCCeEEEEEecCceEEEEcccCHHHH
Q 047239 126 ELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQI 161 (180)
Q Consensus 126 e~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~~ 161 (180)
..-|+..|+...+.+++.+|.||||++.|...+..+
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 445899999999999999999999999998765433
No 17
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=92.75 E-value=0.059 Score=44.63 Aligned_cols=39 Identities=13% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCcCCceeEEEecCCeEEEEEecCceEEEEcccCHHHHH
Q 047239 124 EPELFPGLIYRMKKPNVTMLIFLSGKVVITGAKAREQIY 162 (180)
Q Consensus 124 ePe~fpgli~r~~~p~~t~lIF~sGkivitGaks~~~~~ 162 (180)
++..=|+..|+...+.+|+.+|.||||++.|...+..+.
T Consensus 24 ~~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~ 62 (257)
T 3vn5_A 24 RKINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLK 62 (257)
T ss_dssp EECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHH
T ss_pred cccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHH
Confidence 455568999999999999999999999999997654443
No 18
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=82.12 E-value=12 Score=27.52 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.7
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
.+.|.|+| +++.+..|.+.|..++.+
T Consensus 134 ~~~v~I~G--~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 134 ERAITIAG--IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEc--CHHHHHHHHHHHHHHHhc
Confidence 57899999 589999999999988875
No 19
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=75.51 E-value=1.5 Score=33.68 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=45.4
Q ss_pred eeeeeEEEEecCccc---chhhHhhhcCC---CCccCCcCCcee--EEEecCCeEEEEEecCceEE-----------EEc
Q 047239 94 KIQNIVGSCDVEFPI---KLERLNGFHAM---FSTYEPELFPGL--IYRMKKPNVTMLIFLSGKVV-----------ITG 154 (180)
Q Consensus 94 ~i~NIva~~~~~~~i---~L~~la~~~~~---~~~YePe~fpgl--i~r~~~p~~t~lIF~sGkiv-----------itG 154 (180)
.+...-|+.+=||.. -|++||.++.. ...-|=+..|.+ .|.+.. -.|+++|..|+.+ +.|
T Consensus 44 VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~s-iPT~~fFk~G~~v~vd~Gtgd~~k~vG 122 (160)
T 2av4_A 44 VCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYD-PVSVMFFYRNKHMMIDLGTGNNNKINW 122 (160)
T ss_dssp EEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCS-SEEEEEEETTEEEEEECSSSCCSCBCS
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCC-CCEEEEEECCEEEEEecCCCCcCeEEe
Confidence 344444555544432 16777765322 111122222222 333333 3799999999997 779
Q ss_pred ccC-HHHHHHHHHHHHHHH
Q 047239 155 AKA-REQIYAAFNNIYPVL 172 (180)
Q Consensus 155 aks-~~~~~~a~~~i~~~L 172 (180)
+.+ .+++.+.++.+++--
T Consensus 123 a~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 123 PMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHh
Confidence 976 888999888887653
No 20
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=72.70 E-value=3.5 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=23.0
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 56778899986 789999888888776654
No 21
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=71.93 E-value=5.9 Score=26.42 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=28.4
Q ss_pred eEEEEEecCce--------EEEEcccCHHHHHHHHHHHHHHHh
Q 047239 139 NVTMLIFLSGK--------VVITGAKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 139 ~~t~lIF~sGk--------ivitGaks~~~~~~a~~~i~~~L~ 173 (180)
.+++.|-.+|. |.|+| +++.+..|.+.|..++.
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 57788888888 99999 78999999999988765
No 22
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=70.59 E-value=6.9 Score=25.68 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHh
Confidence 45666888885 68998988888887664
No 23
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=70.55 E-value=5 Score=26.38 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=22.4
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 46778899985 68999988888887764
No 24
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=69.59 E-value=8 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=22.7
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|..|+.+ ..|..+.+++.+.++.++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 45677888875 789999999988887664
No 25
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=69.23 E-value=5.5 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.1
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ .+|..+.+++.+.++.+
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 46777889885 67999988888887654
No 26
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=68.88 E-value=6.6 Score=26.82 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.7
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhccccC
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVYVTYD 179 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~~~~~ 179 (180)
+|.|+|+|. ++.+..|.+.|..++.+..+.+
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~~~~~ 89 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQDKRS 89 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcccccc
Confidence 689999997 7999999999999988776543
No 27
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=68.25 E-value=6.3 Score=26.08 Aligned_cols=29 Identities=3% Similarity=0.277 Sum_probs=22.4
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+.
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 55666889886 679989888888877654
No 28
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=68.07 E-value=7.7 Score=27.06 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHh
Confidence 45566889886 78999998888887765
No 29
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=67.80 E-value=7.6 Score=24.92 Aligned_cols=29 Identities=38% Similarity=0.598 Sum_probs=22.5
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 56677889984 679889888888877654
No 30
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=67.56 E-value=8.6 Score=25.15 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=22.8
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
++.+|.+|+++ ..|..+.++....++++
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 67788999996 67999998888777765
No 31
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=67.50 E-value=9.3 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+.+ ..|..+.+++...+++++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 67788999986 679999998888777664
No 32
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=67.33 E-value=6.9 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=23.4
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 67788999997 789999888887776653
No 33
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=66.77 E-value=9.2 Score=25.05 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=22.8
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
++.+|.+|+++ ..|..+.+++...+++++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 67777999986 679999988887776653
No 34
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=66.60 E-value=8.9 Score=26.06 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56677899985 67998888888887665
No 35
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=66.37 E-value=7.8 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.9
Q ss_pred cCceEEEEcccCHHHHHHHHHHHHHHHhhccc
Q 047239 146 LSGKVVITGAKAREQIYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 146 ~sGkivitGaks~~~~~~a~~~i~~~L~~~~~ 177 (180)
.++.|+|+|. .+++..|...|..++.+++.
T Consensus 66 ~~~~ItI~G~--~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 66 GEDKITLEGP--TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp SSCEEEEEEC--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHHHHh
Confidence 5789999999 58999999999998887654
No 36
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=66.07 E-value=6.9 Score=25.52 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=23.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
++.+|.+|+++ ..|..+.+++...+++++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 67777999987 579989998888777653
No 37
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=65.33 E-value=7.4 Score=25.38 Aligned_cols=28 Identities=32% Similarity=0.615 Sum_probs=21.7
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|..+.+++...++.+
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHH
Confidence 45666888876 67998999888887765
No 38
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=65.31 E-value=7.7 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (180)
|+.+|.+|+++ ..|..+.+++.+.++.
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 46666889987 6799888888877654
No 39
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=64.92 E-value=9.6 Score=26.55 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=23.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ .+|..+.+++...+++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 66777999987 789999988888777653
No 40
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=64.50 E-value=10 Score=24.56 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=22.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
++.+|.+|+++ .+|..+.++....++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 67888999986 67999998888777654
No 41
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=64.20 E-value=11 Score=26.56 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=26.6
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHHHHh
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~L~ 173 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+++--.
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 115 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGE 115 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcccc
Confidence 57778899984 7899999999999988876533
No 42
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=64.11 E-value=11 Score=24.83 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=22.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
++.+|.+|+++ ..|..+.+++...++++.
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 66777999987 579989988887777654
No 43
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=63.89 E-value=5.1 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=21.8
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence 45666889876 689988888888776543
No 44
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=63.80 E-value=11 Score=25.38 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCC
Q 047239 64 AKSESQAKLAARKYARIVQKIGFP 87 (180)
Q Consensus 64 aks~~~~~~a~~~i~~~L~~~g~~ 87 (180)
|.+.|++++-++-+++.|+++|++
T Consensus 56 aendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC
Confidence 778999999999999999999984
No 45
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=63.72 E-value=8.4 Score=27.97 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
|+.+|..|+++ +.|+.+.+++.+.++.++.
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~ 125 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 46677889876 7899999888888776653
No 46
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=62.96 E-value=9.4 Score=26.21 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=31.0
Q ss_pred eEEEEEecCc-----eEEEEcccCHHHHHHHHHHHHHHHhhccc
Q 047239 139 NVTMLIFLSG-----KVVITGAKAREQIYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 139 ~~t~lIF~sG-----kivitGaks~~~~~~a~~~i~~~L~~~~~ 177 (180)
.+.+.|...| .|.|+|. .+.++.|.+.|..++.++..
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHHHH
Confidence 4777777888 8999997 48999999999999887754
No 47
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=62.94 E-value=9 Score=27.79 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=21.0
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|++|+++ ..|..+.++++..++++.
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 78888999986 789999888877766654
No 48
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=62.90 E-value=11 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=22.5
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 56777889886 789988888888776543
No 49
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=62.37 E-value=9.2 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=21.4
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARK 76 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~ 76 (180)
++.+|.+|+++ ..|..+.+++...+++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 67777999987 6798898887776654
No 50
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=61.91 E-value=12 Score=25.33 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=22.6
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
++.+|.+|+++ ..|..+.+++...++++.
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 66777999986 679889888877776653
No 51
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=61.54 E-value=12 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=21.8
Q ss_pred cCCcEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 55 SSGKIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 55 ~SGKivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
.++.|.++|. .+++..|...+..+++++
T Consensus 66 ~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 5789999998 677777777777776654
No 52
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=61.32 E-value=14 Score=23.60 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=22.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
++.+|.+|+++ ..|..+.+++...++++.
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 67778999985 579889888887777654
No 53
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=61.07 E-value=15 Score=26.37 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=26.8
Q ss_pred EEEEecCceEE-----------EEc-ccCHHHHHHHHHHHHHHHh
Q 047239 141 TMLIFLSGKVV-----------ITG-AKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 141 t~lIF~sGkiv-----------itG-aks~~~~~~a~~~i~~~L~ 173 (180)
|+.+|..|+++ +.| ..+.+++.+.++.++.-..
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 34488899988 899 8999999999998876643
No 54
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=61.01 E-value=13 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 57778899984 6788 8888888777654
No 55
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=60.70 E-value=9.6 Score=24.72 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=21.0
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|..|+++ ..|. +.+++.+.++.+
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 56777889886 7798 888888877654
No 56
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=60.49 E-value=6.3 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.9
Q ss_pred EEEEecCCcEEE--EccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIVC--TGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKivi--tGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++- .|..+.+++...++++
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 788889999875 7999999888776654
No 57
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=60.41 E-value=11 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=27.0
Q ss_pred EEEEEecCCcEE--EEccCCHHHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIV--CTGAKSESQAKLAARKYARIV 81 (180)
Q Consensus 49 ~t~lIf~SGKiv--itGaks~~~~~~a~~~i~~~L 81 (180)
.++++..+|+++ ..|..+.+++...++++++.+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 577888999996 578889999988888877654
No 58
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=59.95 E-value=13 Score=27.57 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=37.9
Q ss_pred chhhHhhhcCC----CCccCCcCCcee--EEEecCCeEEEEEecCceE--EEEcccCHHHHHHHHHHHH
Q 047239 109 KLERLNGFHAM----FSTYEPELFPGL--IYRMKKPNVTMLIFLSGKV--VITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 109 ~L~~la~~~~~----~~~YePe~fpgl--i~r~~~p~~t~lIF~sGki--vitGaks~~~~~~a~~~i~ 169 (180)
-|++|+.++.. .+.-|.+..|.+ .|.++. --|+++|..|++ .+.|+.+.+++.+.++.++
T Consensus 57 vleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~s-IPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 57 MIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFR-FPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp HHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCS-SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCcc-CCEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 37777765322 233333333433 343332 248999999999 4789999888888877654
No 59
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=59.31 E-value=8.6 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=20.9
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 56777889885 6888 888888877654
No 60
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=59.27 E-value=14 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=23.2
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYPV 171 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~ 171 (180)
|+.+|.+|+++ ..|. +.+++.+.++.+++-
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 56777899986 6788 788888888777654
No 61
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=59.14 E-value=13 Score=26.86 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=22.9
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|..+.+++.+.++..+
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 56777899987 889988888887776643
No 62
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=58.94 E-value=15 Score=24.18 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=21.6
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..|. +.++++..+++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 67888999985 6788 8888777776653
No 63
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=58.91 E-value=10 Score=25.71 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=21.5
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|..|+++ ..|. +.+++.+.++.+
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 57778999886 6788 888888887654
No 64
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=58.67 E-value=13 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=23.8
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
|+.+|.+|+++ ..|..+.+++.+.++.++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 57777899887 7799999988888876654
No 65
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=58.37 E-value=15 Score=25.65 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=23.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 67788999987 789989888877776654
No 66
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=58.37 E-value=16 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..| .+.+++.+.++.++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 46778889885 678 47788887776654
No 67
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=57.76 E-value=13 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=18.7
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFN 166 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~ 166 (180)
|+++|..|+.+ ++|+ +.+++.+.++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~ 102 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVE 102 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHH
Confidence 67888999985 7886 6777766654
No 68
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=57.71 E-value=11 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=21.4
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+.+ ..|. +.+++...++++
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 77888999996 6788 888887776654
No 69
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=57.52 E-value=7.3 Score=26.09 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 46777888884 7788 888888777643
No 70
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=57.44 E-value=13 Score=24.76 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=20.0
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFN 166 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~ 166 (180)
|+.+|.+|+++ ..|..+.+++.+.++
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 101 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELVN 101 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHH
Confidence 45666899987 789999888776654
No 71
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=57.34 E-value=17 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=27.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYARIVQK 83 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~~L~~ 83 (180)
|+.+|.+|+++ ..|..+.+++...+++++..-.+
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 78888999995 77999999999988888765443
No 72
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=57.22 E-value=12 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=21.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++ ..|. +.++++..++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 68888999987 5688 888888777654
No 73
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=56.90 E-value=14 Score=24.49 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=26.6
Q ss_pred EEEEEecCCc--------EEEEccCCHHHHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGK--------IVCTGAKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 49 ~t~lIf~SGK--------ivitGaks~~~~~~a~~~i~~~L~ 82 (180)
+.+.|-.+|. +.++| +.+.+..|.+.+..+++
T Consensus 45 a~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 45 VKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp CEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 6788888998 99999 88888888888777653
No 74
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=56.40 E-value=8.2 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=21.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
++.+|.+|+++ ..|..+.++....++++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence 66777999986 67998888887766554
No 75
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=56.35 E-value=19 Score=25.81 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=27.9
Q ss_pred EEEEecCCcEE-----------EEc-cCCHHHHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV-----------CTG-AKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 50 t~lIf~SGKiv-----------itG-aks~~~~~~a~~~i~~~L~ 82 (180)
|+.+|.+|+++ ..| ..+.+++...++.+.+-.+
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 45599999998 889 8999999999998887654
No 76
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=55.60 E-value=8.6 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEecCceEEE--EcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVVI--TGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkivi--tGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++- .|..+.+++.+.++.+
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 677889999874 7999999888877654
No 77
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=55.59 E-value=14 Score=25.95 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=24.3
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~ 79 (180)
|+.+|.+|+++ ..|..+.+++...+++++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 68888999987 6789999988887776653
No 78
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=55.39 E-value=14 Score=24.83 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|.. .+++.+.++.++
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 57778899985 78888 888887776654
No 79
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=54.91 E-value=19 Score=23.77 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|..|+++ ..|.. .+++.+.++.+
T Consensus 81 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 47788999985 67884 77777777654
No 80
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=54.58 E-value=17 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 67788999997 789999888877766644
No 81
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=54.54 E-value=6.6 Score=25.65 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (180)
|+.+|.+|+++ ..|..+.+++.+.++.
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 45666889875 6899888887776653
No 82
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=54.33 E-value=25 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.1
Q ss_pred eEEEEEecCc----eEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 139 NVTMLIFLSG----KVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 139 ~~t~lIF~sG----kivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
.+++.|-..| -|.|+|. ++.+..|.+.|...|.+
T Consensus 35 ga~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 35 GARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 3555555555 5889987 78999999999998864
No 83
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=54.33 E-value=18 Score=26.75 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+++|++|+.+ ..|+.+.++....+++++
T Consensus 94 TlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 94 ATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 89999999996 469999988887776654
No 84
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=54.20 E-value=14 Score=24.68 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAAR 75 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~ 75 (180)
++.+|.+|+++ ..|..+.+++...++
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 101 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELVN 101 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHH
Confidence 66677999987 789998887655443
No 85
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=54.12 E-value=6.7 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (180)
|+.+|.+|+++ ..|..+.+++.+.++.
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 34556889986 8899998888777653
No 86
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.24 E-value=20 Score=26.44 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=25.6
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
-|+++|..|+.+ +.|+.+.+++.+.++.++
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 589999999996 679999999988887665
No 87
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=53.00 E-value=18 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARK 76 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~ 76 (180)
|+.+|.+|+.+ .+|+ +.+++...+++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence 78899999986 5786 77766655543
No 88
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=52.82 E-value=20 Score=25.51 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=28.4
Q ss_pred EEEEEecCCcEE--EEccCCHHHHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIV--CTGAKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 49 ~t~lIf~SGKiv--itGaks~~~~~~a~~~i~~~L~ 82 (180)
.+++|..+|+++ ..|..+.++....++++++.++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 163 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 588899999997 5688899999888888877665
No 89
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=52.80 E-value=2.8 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=20.6
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 87 TLILFKDGQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHHHH
Confidence 46677889886 67998888877766543
No 90
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=52.37 E-value=19 Score=24.22 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|..|+++ ..|.. .+++.+.++.+
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 57788999986 67885 77777776653
No 91
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=52.27 E-value=22 Score=24.05 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEe-cCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF-~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+| .+|+++ ..|..+.+++.+.++..
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 45666 789986 66998888887776654
No 92
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=52.12 E-value=21 Score=24.82 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=26.7
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIYPVL 172 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~L 172 (180)
.+++|..+|+++ ..|..+.+++.+.++.++..+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 578888999996 678888999998888776554
No 93
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=51.73 E-value=10 Score=25.34 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
++.+|.+|+++ ..|. +.+++...++++
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 67889999985 6788 888877766543
No 94
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=51.57 E-value=12 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFN 166 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~ 166 (180)
|+.+|.+|+++ ..|.. .+++.+.++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 46678899987 78987 777777664
No 95
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=51.26 E-value=18 Score=24.62 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++ ..|. +.++++..++++
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 67788999986 5788 888877766654
No 96
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=51.22 E-value=23 Score=24.40 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=21.6
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~ 79 (180)
|+.+|.+|+++ ..|. +.++++..++++..
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 132 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILD 132 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence 57778999987 5688 77777777666553
No 97
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=50.79 E-value=13 Score=25.25 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=28.3
Q ss_pred eEEEEEecCce--------EEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 139 NVTMLIFLSGK--------VVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 139 ~~t~lIF~sGk--------ivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
.+++.|-..|. |+|+| +++.+..|.+.|..++.+..
T Consensus 45 ga~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 45 GVKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp TSEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCCS
T ss_pred CCeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhccC
Confidence 46666666665 99999 57899999999999987654
No 98
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=50.77 E-value=26 Score=25.75 Aligned_cols=31 Identities=3% Similarity=-0.072 Sum_probs=26.0
Q ss_pred EEEEEecCCcEEE--EccCCHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVC--TGAKSESQAKLAARKYAR 79 (180)
Q Consensus 49 ~t~lIf~SGKivi--tGaks~~~~~~a~~~i~~ 79 (180)
-|+++|++|+.+- .|+.+.++....+++++.
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 3999999999985 599999998888877663
No 99
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=50.55 E-value=16 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.130 Sum_probs=23.2
Q ss_pred ceEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 148 GKVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 148 GkivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
+.|+|+| +.+.++.|.+.|..++.+-.
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhccc
Confidence 7899999 68999999999999887654
No 100
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=50.51 E-value=8.2 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=20.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARK 76 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~ 76 (180)
++.+|.+|+++ ..|..+.+++...+++
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 66677999986 6799998887766554
No 101
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=50.48 E-value=7.2 Score=27.28 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=23.7
Q ss_pred EEEEe-cCceEE----EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV----ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF-~sGkiv----itGaks~~~~~~a~~~i~~ 170 (180)
|+.+| .+|+++ ..|..+.+++.+.++.+-|
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~ 128 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP 128 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence 56777 899996 8999999999988877654
No 102
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=50.12 E-value=25 Score=22.56 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=21.6
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHh
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~ 173 (180)
.+.|.|+|. ++.+..|.+.|..++.
T Consensus 49 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 49 DRQVTITGS--AASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeC--HHHHHHHHHHHHHHHH
Confidence 688999996 7899999999988775
No 103
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=50.07 E-value=26 Score=24.19 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=20.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..| .+.+++...+++++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 67888999986 578 47777777666654
No 104
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=49.88 E-value=12 Score=25.81 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARK 76 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~ 76 (180)
|+.+|.+|+++ ..|..+.++....+++
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 66677999997 7899998887766554
No 105
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=49.78 E-value=13 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|..|+++ ..|..+.+++...++..
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYASI 104 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHH
Confidence 45666889884 56988998888877654
No 106
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=49.32 E-value=24 Score=24.50 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=23.4
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ .+|..+.+..+..++++.
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 88899999986 579999888877666554
No 107
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=48.08 E-value=30 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYPV 171 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~ 171 (180)
|+.+|..|+++ ..|. +.+++.+.++.+++-
T Consensus 79 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 79 YFIIIHKGTILKELSGA-DPKEYVSLLEDCKNS 110 (112)
T ss_dssp EEEEEETTEEEEEECSC-CHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEecCC-CHHHHHHHHHHHHhh
Confidence 35567888875 5687 456687777766553
No 108
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=47.98 E-value=28 Score=24.67 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=28.0
Q ss_pred EEEEEecCceEEEE--cccCHHHHHHHHHHHHHHHhhcc
Q 047239 140 VTMLIFLSGKVVIT--GAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 140 ~t~lIF~sGkivit--Gaks~~~~~~a~~~i~~~L~~~~ 176 (180)
.+++| ++|+|+-. |.....++...++.|...|.+++
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 157 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 157 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHhh
Confidence 68999 99999854 55556778888888888887664
No 109
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=47.98 E-value=29 Score=23.40 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=20.7
Q ss_pred EEEEe-cCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIF-SSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf-~SGKiv--itGaks~~~~~~a~~~i 77 (180)
++.+| .+|+++ ..|..+.+++...+++.
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 56667 799997 56998888776666554
No 110
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=47.72 E-value=21 Score=23.84 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 116 (117)
T 2xc2_A 88 TFIAIKNGEKVGDVVGA-SIAKVEDMIKKF 116 (117)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred eEEEEeCCcEEEEEeCC-CHHHHHHHHHHh
Confidence 56778889885 6784 677777776653
No 111
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=47.25 E-value=28 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=20.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ .+|.. .+++...++++.
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 67888999986 67887 777766666543
No 112
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=46.88 E-value=23 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.0
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 75 t~~~~~~g~~~~~~~G~-~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSGA-NETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCC-CHHHHHHHHHhh
Confidence 46677888875 5684 778877777654
No 113
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=46.72 E-value=27 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 57778899985 6786 788887777654
No 114
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=46.34 E-value=29 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEec-CceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFL-SGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~-sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|. +|+++ ..|..+.+++.+.++..
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 456666 89885 67998988888877654
No 115
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=46.09 E-value=29 Score=25.25 Aligned_cols=29 Identities=28% Similarity=0.615 Sum_probs=24.6
Q ss_pred EEEEccCCHHHHHHHHHHHHHHHHHcCCCC
Q 047239 59 IVCTGAKSESQAKLAARKYARIVQKIGFPV 88 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~~~L~~~g~~~ 88 (180)
|+|||. |..+++..++.+.+.+++.|..+
T Consensus 38 VIatg~-S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 38 LICHGN-SEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp EEEEES-SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEcC-CHHHHHHHHHHHHHHHHHcCCcc
Confidence 677755 99999999999999999988743
No 116
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=46.04 E-value=33 Score=22.49 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=19.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++ ..|. +.+++...++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence 58899999985 5787 477666666554
No 117
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=45.90 E-value=27 Score=24.78 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=27.9
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHHHHHh
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~L~ 173 (180)
.+++|..+|+++ ..|..+.+++.+.++.+++.+.
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 163 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 689999999997 5688889999888888776654
No 118
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=45.72 E-value=32 Score=23.18 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=20.7
Q ss_pred EEEEec-CCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFS-SGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~-SGKiv--itGaks~~~~~~a~~~i 77 (180)
++.+|. +|+++ ..|..+.+++...+++.
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 666777 99986 66988888876665543
No 119
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=45.49 E-value=39 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.0
Q ss_pred ceEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 148 GKVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 148 GkivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
+.|+|+|. ++.++.|.+.|..++.+.-
T Consensus 52 ~~v~I~G~--~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 52 RIITITGT--QDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp EEEEEEEC--HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeC--HHHHHHHHHHHHHHHHhcc
Confidence 68999993 7999999999999987753
No 120
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=45.45 E-value=27 Score=26.54 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=28.6
Q ss_pred EEEEEecCCcEE-----------EEccCC-HHHHHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIV-----------CTGAKS-ESQAKLAARKYARIVQK 83 (180)
Q Consensus 49 ~t~lIf~SGKiv-----------itGaks-~~~~~~a~~~i~~~L~~ 83 (180)
.|+.+|.+|+.+ +.|+.+ .+++...++++.+--++
T Consensus 97 PT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~ 143 (160)
T 2av4_A 97 VSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK 143 (160)
T ss_dssp EEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence 689999999997 679987 88898888888766443
No 121
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=44.90 E-value=16 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (180)
|+.+|.+|+++ ..|..+.+++.+.++.
T Consensus 76 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 76 TLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 46677888874 5788888888887654
No 122
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=44.70 E-value=17 Score=24.58 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=18.6
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAAR 75 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~ 75 (180)
++.+|.+|+++ ..|.. .++++..++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 56788999997 78887 766665544
No 123
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=44.68 E-value=30 Score=23.22 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=19.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++ ..|.. .++....++++
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 68899999987 57875 77666665543
No 124
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=44.48 E-value=35 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=26.3
Q ss_pred EEEEEecCCcEEEE--ccCCHHHHHHHHHHHHHHHHHc
Q 047239 49 TTALIFSSGKIVCT--GAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 49 ~t~lIf~SGKivit--Gaks~~~~~~a~~~i~~~L~~~ 84 (180)
.+++| .+|+|+-. |....++....++.+.+.|+.+
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68889 99999854 5555667777777777777654
No 125
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.23 E-value=32 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
|+.+|..|+++ ..|..+.+++.+.++.+++
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 45666778754 6788888888888877654
No 126
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=44.16 E-value=32 Score=25.20 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=24.2
Q ss_pred EEEEccCCHHHHHHHHHHHHHHHHHcCCC
Q 047239 59 IVCTGAKSESQAKLAARKYARIVQKIGFP 87 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~~~L~~~g~~ 87 (180)
|+|||. |..+++..++.+.+.+++.|..
T Consensus 38 VIaTg~-S~rqv~Aiad~v~~~lk~~g~~ 65 (130)
T 2id1_A 38 IVATGD-SNRQVKALANSVQVKLKEAGVD 65 (130)
T ss_dssp EEEECS-SHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 677755 9999999999999999998874
No 127
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=44.08 E-value=25 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=23.4
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
|+.+|..|+++ ++|+.+.+.....++.+..
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~ 126 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence 78889999985 7899998888877766543
No 128
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=43.95 E-value=27 Score=22.57 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEecCceE--EEEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKV--VITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGki--vitGaks~~~~~~a~~~ 167 (180)
|+.+|.+|++ ...|..+.+++.+.++.
T Consensus 81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 4666778887 46788888888776653
No 129
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=43.60 E-value=37 Score=22.56 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.8
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
.+.|+|+|. ++.++.|.+.|..++.+.-
T Consensus 58 ~~~v~I~G~--~e~v~~A~~~I~~~i~e~~ 85 (89)
T 1j5k_A 58 DRIITITGT--QDQIQNAQYLLQNSVKQYS 85 (89)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHHHC
T ss_pred ccEEEEEcC--HHHHHHHHHHHHHHHHhhh
Confidence 478999997 7899999999999887753
No 130
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=43.24 E-value=27 Score=23.27 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=22.0
Q ss_pred EEEEe-cCceEE-EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV-ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF-~sGkiv-itGaks~~~~~~a~~~i~ 169 (180)
++.++ .+|+++ ..|..+.+++.+.++.++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 44555 799996 888888888888877654
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=43.18 E-value=18 Score=28.42 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=23.9
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
|+.+|..|+++ .+|..+.+.+...+....|
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp 114 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP 114 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence 57778899987 7899998888887776543
No 132
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=42.31 E-value=23 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=18.3
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (180)
|+.+|.+|+++ ..| .+.+++.+.++.
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 56777889874 568 577777776654
No 133
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=41.78 E-value=31 Score=25.84 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=24.8
Q ss_pred EEEEEecCceE--EEEcccCHHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKV--VITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 140 ~t~lIF~sGki--vitGaks~~~~~~a~~~i~~ 170 (180)
-|+.|+.+|+. .+.|+.+.+++.++++.+..
T Consensus 178 Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 178 PALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp SEEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 35666779997 78999999999999877653
No 134
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=41.77 E-value=45 Score=23.24 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=23.7
Q ss_pred EEEEEecCCcEEE--EccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVC--TGAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivi--tGaks~~~~~~a~~~i~ 78 (180)
.+++|..+|+++- .|..+.+++...+++++
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 7889999999985 46778888877777665
No 135
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=41.54 E-value=34 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 82 t~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVGA-DKDGLPTLVAKHA 111 (113)
T ss_dssp EEEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecC-CHHHHHHHHHHhh
Confidence 56777899984 6785 6788888877665
No 136
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=41.53 E-value=35 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++ ..|. +.+++...++++
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 67788999986 5785 777776666554
No 137
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=41.20 E-value=30 Score=22.33 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=21.2
Q ss_pred EEEEecCCcE--EEEccCCHHHHHHHHHH
Q 047239 50 TALIFSSGKI--VCTGAKSESQAKLAARK 76 (180)
Q Consensus 50 t~lIf~SGKi--vitGaks~~~~~~a~~~ 76 (180)
++.+|.+|++ ...|..+.+++...+++
T Consensus 81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 6888899998 46788888888776654
No 138
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=40.49 E-value=58 Score=21.73 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.2
Q ss_pred ceEEEEcccCHHHHHHHHHHHHHHHhhccc
Q 047239 148 GKVVITGAKAREQIYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 148 GkivitGaks~~~~~~a~~~i~~~L~~~~~ 177 (180)
+.|+|+|. .+.+..|.+.|..++.+.+.
T Consensus 60 r~v~I~G~--~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 60 RSCMLTGT--PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp EEEEEEEC--HHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeC--HHHHHHHHHHHHHHHHhccc
Confidence 58999996 78999999999999988764
No 139
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=40.45 E-value=25 Score=23.56 Aligned_cols=29 Identities=7% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEe-cCceEE-EE---cccCHHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV-IT---GAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF-~sGkiv-it---Gaks~~~~~~a~~~i~ 169 (180)
++.++ .+|+++ .. |..+.+++.+.++.++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 34455 799997 66 8888888888877653
No 140
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=40.08 E-value=33 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARK 76 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~ 76 (180)
|+.+|.+|+++ ..|..+.++++..+++
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~ 103 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYAS 103 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHH
Confidence 67778999985 4698898887766554
No 141
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=39.56 E-value=47 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 84 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 84 TFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 56667888875 6785 6778877776654
No 142
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.44 E-value=33 Score=23.78 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=28.1
Q ss_pred eEEEEEecCc----eEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 139 NVTMLIFLSG----KVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 139 ~~t~lIF~sG----kivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
.+++.|=..| .|+|+|.. +.+..|.+.|..++.+..
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~~--e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGLA--ANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEECH--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcCH--HHHHHHHHHHHHHHhhHH
Confidence 4555555666 99999973 889999999998887654
No 143
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=39.30 E-value=16 Score=24.59 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=18.1
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAF 165 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~ 165 (180)
|+.+|..|+++ +.|..+.+++...+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 90 GFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 56677888875 56888888776654
No 144
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.14 E-value=41 Score=22.62 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=22.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~ 79 (180)
++.+|..|+.+ ..|..+.+++...++++..
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 67788889865 5688888888777766553
No 145
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.99 E-value=35 Score=23.28 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.8
Q ss_pred eEEEEEecCc-------eEEEEcccCHHHHHHHHHHHHHHHhhccc
Q 047239 139 NVTMLIFLSG-------KVVITGAKAREQIYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 139 ~~t~lIF~sG-------kivitGaks~~~~~~a~~~i~~~L~~~~~ 177 (180)
.+.+.|=..| .|+|+|. .+.+..|.+.|..++.+..+
T Consensus 47 g~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 47 DVNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHHHh
Confidence 3555555566 8999996 67899999999888876553
No 146
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=38.91 E-value=34 Score=25.56 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=24.9
Q ss_pred EEEEecCCcE--EEEccCCHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKI--VCTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 50 t~lIf~SGKi--vitGaks~~~~~~a~~~i~~ 79 (180)
++.|+.+|+. ...|+.+.++...+++++..
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 5667789998 78999999999988887664
No 147
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=38.90 E-value=15 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=22.5
Q ss_pred EEEEe-cCCcEE----EEccCCHHHHHHHHHHHH
Q 047239 50 TALIF-SSGKIV----CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf-~SGKiv----itGaks~~~~~~a~~~i~ 78 (180)
++.+| .+|+++ ..|..+.+++...++++.
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~ 127 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ 127 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence 66677 999996 899999998877766543
No 148
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=38.83 E-value=33 Score=21.01 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=18.0
Q ss_pred CceEEEEcccCHHHHHHHHHHH
Q 047239 147 SGKVVITGAKAREQIYAAFNNI 168 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i 168 (180)
+|++...|..+.+++.+.++..
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 7888889998888988887654
No 149
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=38.82 E-value=37 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=21.5
Q ss_pred EEEEe-cCCcEE-EEccCCHHHHHHHHHHHH
Q 047239 50 TALIF-SSGKIV-CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf-~SGKiv-itGaks~~~~~~a~~~i~ 78 (180)
++.++ .+|+++ ..|..+.+++...+++++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 34444 799996 888888888877777654
No 150
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=38.71 E-value=55 Score=22.78 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.0
Q ss_pred eEEEEEecCceEEE--EcccCHHHHHHHHHHHHHHHhhcc
Q 047239 139 NVTMLIFLSGKVVI--TGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 139 ~~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
..+++|-++|+|+- .|..+.+++.+.++.+ |.+||
T Consensus 128 ~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l---l~~~~ 164 (164)
T 2ggt_A 128 IIMYLIGPDGEFLDYFGQNKRKGEIAASIATH---MRPYR 164 (164)
T ss_dssp CEEEEECTTSCEEEEEETTCCHHHHHHHHHHH---HGGGC
T ss_pred ceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH---HHhcC
Confidence 37899999999974 5677777777766554 45554
No 151
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=38.47 E-value=59 Score=22.97 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=26.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYARI 80 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~~ 80 (180)
|+++|.+|+.+ ++|+.+.++....+++++..
T Consensus 79 T~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 79 TFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp EEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 88999999986 68999999998888887644
No 152
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=38.35 E-value=53 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=28.6
Q ss_pred EEEEEecCCcEEEE--ccCCHHHHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVCT--GAKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 49 ~t~lIf~SGKivit--Gaks~~~~~~a~~~i~~~L~ 82 (180)
.+++|..+|+|+-. |..+.++....++++++.++
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 58888999999754 88899999998888887765
No 153
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=37.89 E-value=59 Score=21.33 Aligned_cols=27 Identities=26% Similarity=0.163 Sum_probs=22.4
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVY 175 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~ 175 (180)
.+.|.|+|. ++.+..|.+.|..++.+-
T Consensus 50 ~r~v~I~G~--~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 50 NRRVTITGS--PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp EEEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcC--HHHHHHHHHHHHHHHhcc
Confidence 368899996 789999999999888653
No 154
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=37.61 E-value=21 Score=22.04 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.0
Q ss_pred CceEEEEcccCHHHHHHHHHHH
Q 047239 147 SGKVVITGAKAREQIYAAFNNI 168 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i 168 (180)
+|++...|..+.+++.+.++..
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 8888889998889988887653
No 155
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=37.60 E-value=36 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=17.2
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
|+.+|.+|+++ ..|.. .+++.+.++..
T Consensus 77 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 105 (107)
T 1gh2_A 77 TFQFFRNKVRIDQYQGAD-AVGLEEKIKQH 105 (107)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCC-HHHHHHHHHHh
Confidence 46667888875 67864 45566665543
No 156
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=37.56 E-value=42 Score=21.32 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.4
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHh
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~ 173 (180)
.+.|.|+|. ++.+..|.+.|..++.
T Consensus 50 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 50 NRRVTITGS--PAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEES--HHHHHHHHHHHHHHCC
T ss_pred eeEEEEEeC--HHHHHHHHHHHHHHHh
Confidence 368889996 7899999998887764
No 157
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=36.97 E-value=59 Score=22.54 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=26.4
Q ss_pred EEEEEecCc------eEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 140 VTMLIFLSG------KVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 140 ~t~lIF~sG------kivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
+++.|-..+ .|+|+|. ++.++.|.+.|..++.+..
T Consensus 42 akI~I~~~~~~~~er~V~I~G~--~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 42 VRIQFKQDDGTGPEKIAHIMGP--PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp CEEEECSSCSSSSEEEEEEESS--HHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCceeEEEEEeC--HHHHHHHHHHHHHHHhccc
Confidence 455554433 5889986 7899999999999987754
No 158
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=36.72 E-value=37 Score=22.38 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEecCCcEEE--EccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIVC--TGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKivi--tGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++- .|. +.++++..++++
T Consensus 80 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 80 TLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 788889999865 588 667777766654
No 159
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=35.89 E-value=31 Score=23.55 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.4
Q ss_pred eEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 149 KVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 149 kivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
.|+|+|.+ +.+..|.+.|..++.+.+
T Consensus 62 ~V~I~G~~--~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 62 TVVIRGPS--SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp EEEEESCH--HHHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCH--HHHHHHHHHHHHHHhhhh
Confidence 99999985 399999999999887765
No 160
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=35.87 E-value=50 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=27.4
Q ss_pred cEEEEEecCC-----cEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 48 KTTALIFSSG-----KIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 48 ~~t~lIf~SG-----KivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
.+.+.|..+| .|.++|. .+.+..|.+.+..+.++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHH
Confidence 4678888888 7999997 478888888888777654
No 161
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=35.51 E-value=49 Score=22.73 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.9
Q ss_pred EEEEe-cCCcEE-EEccCCHHHHHHHHHHHH
Q 047239 50 TALIF-SSGKIV-CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf-~SGKiv-itGaks~~~~~~a~~~i~ 78 (180)
++.+| .+|+++ ..|..+.+++...+++..
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 66777 899874 578889888877776654
No 162
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=35.49 E-value=24 Score=23.84 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=26.7
Q ss_pred EEEEEecCCc--------EEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 49 TTALIFSSGK--------IVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 49 ~t~lIf~SGK--------ivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
+.+.|-..|. +.++| +.+.+..|.+.+..++++.
T Consensus 46 a~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 46 VKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp SEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCC
T ss_pred CeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhcc
Confidence 5677777776 99998 6778888888888887654
No 163
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=35.19 E-value=34 Score=22.87 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=20.3
Q ss_pred EEEEecCCcEE-EE---ccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV-CT---GAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv-it---Gaks~~~~~~a~~~i~ 78 (180)
++++=.+|+++ .. |..+.+++...+++++
T Consensus 103 ~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 103 FVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 34444899997 66 8888888877776653
No 164
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=34.81 E-value=62 Score=22.71 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=25.6
Q ss_pred EEEEEecCCcEEE--EccCCHHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVC--TGAKSESQAKLAARKYARI 80 (180)
Q Consensus 49 ~t~lIf~SGKivi--tGaks~~~~~~a~~~i~~~ 80 (180)
.+++|..+|+|+- .|..+.+++...++++++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 165 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA 165 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7889999999985 5777888888888777654
No 165
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=34.03 E-value=57 Score=23.88 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=24.4
Q ss_pred CCcEEEE--ccCCHHHHHHHHHHHHHHHHH
Q 047239 56 SGKIVCT--GAKSESQAKLAARKYARIVQK 83 (180)
Q Consensus 56 SGKivit--Gaks~~~~~~a~~~i~~~L~~ 83 (180)
+|+..+. |+.+.++....++.++...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999999988876543
No 166
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=40.10 E-value=8.7 Score=24.73 Aligned_cols=27 Identities=33% Similarity=0.699 Sum_probs=19.5
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (180)
|+.+|.+|+++ ..|..+.+++.+.++.
T Consensus 76 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 2yj7_A 76 TLLLFKNGQVVDRLVGAQPKEALKERIDK 104 (106)
Confidence 45666889876 5788877777776654
No 167
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=33.73 E-value=44 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=21.5
Q ss_pred EEEEe-cCceEE-EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV-ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF-~sGkiv-itGaks~~~~~~a~~~i~~ 170 (180)
|+.+| .+|+++ ..|..+.+++.+.++...+
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~ 126 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFLL 126 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHhh
Confidence 45556 677763 5788899998888876653
No 168
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=33.72 E-value=70 Score=28.06 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=42.1
Q ss_pred cCCccceE----EEEecCC--c-EE------------------EEEecC-CcEEEEccCCHHHHHHHHHHHHHHHH-HcC
Q 047239 33 NPSRFSAV----TMRIKEP--K-TT------------------ALIFSS-GKIVCTGAKSESQAKLAARKYARIVQ-KIG 85 (180)
Q Consensus 33 ePe~fpgl----i~r~~~P--~-~t------------------~lIf~S-GKivitGaks~~~~~~a~~~i~~~L~-~~g 85 (180)
.|++|||+ .+|+..| + .| +.+-.+ |.|++.|. +.+++... ...|. ++|
T Consensus 87 ~pd~fP~v~~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi-~~e~le~l----~~eL~~~~G 161 (437)
T 3or1_A 87 QPEMFPGVAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGT-QTPQLEEI----FFEMTHNLN 161 (437)
T ss_dssp CTTTCGGGSBCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECC-CGGGHHHH----HHHHHHHSC
T ss_pred CcccCcCcceEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecC-CHHHHHHH----HHHHHhhcC
Confidence 47899994 5788888 3 22 444433 88999988 55555443 44455 788
Q ss_pred CCCcccceeeeeeEEEE
Q 047239 86 FPVQFKDFKIQNIVGSC 102 (180)
Q Consensus 86 ~~~~~~~~~i~NIva~~ 102 (180)
+++....-.+.|++|.-
T Consensus 162 l~~ggsG~~vRnivaC~ 178 (437)
T 3or1_A 162 TDLGGSGSNLRTPESCL 178 (437)
T ss_dssp CCBCCCSSSBCCCEECC
T ss_pred cCccccCCcceeeeccc
Confidence 87655444677888653
No 169
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=33.11 E-value=56 Score=23.59 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=24.0
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhcc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVYV 176 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~~ 176 (180)
.+.|+|+|. ++.++.|...|..++.+.+
T Consensus 135 ~~~v~I~G~--~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 135 EKIAHIMGP--PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcC--HHHHHHHHHHHHHHHhhhh
Confidence 578999996 7899999999999887754
No 170
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=33.05 E-value=52 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEecCceEE-----------EEccc-CHHHHHHHHHHHHHHH
Q 047239 142 MLIFLSGKVV-----------ITGAK-AREQIYAAFNNIYPVL 172 (180)
Q Consensus 142 ~lIF~sGkiv-----------itGak-s~~~~~~a~~~i~~~L 172 (180)
+.+|..|+++ +.|+- +.+++.+.++.++.-.
T Consensus 81 ~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 81 VMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp EEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 4455566654 45655 3788888888777653
No 171
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=33.03 E-value=42 Score=24.76 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=23.7
Q ss_pred cEEEEccCCHHHHHHHHHHHHHHHHHcCCC
Q 047239 58 KIVCTGAKSESQAKLAARKYARIVQKIGFP 87 (180)
Q Consensus 58 KivitGaks~~~~~~a~~~i~~~L~~~g~~ 87 (180)
=|+|||. |..+++..++.+.+.+++.|..
T Consensus 53 fVIatg~-S~rqv~Aiad~v~~~lk~~g~~ 81 (136)
T 3ups_A 53 MVIASGR-SSRQVTAMAQKLADRIKAATGY 81 (136)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 3667755 9999999999999999987763
No 172
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=32.92 E-value=42 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=26.4
Q ss_pred EEEEecCCcEEEE--ccCCHHHHHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIVCT--GAKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 50 t~lIf~SGKivit--Gaks~~~~~~a~~~i~~~L~ 82 (180)
+++|..+|+|+-. |..+.+++...++++++.+.
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999755 77788888888877776543
No 173
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=32.70 E-value=39 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=25.8
Q ss_pred CcEEEEccCCHHHHHHHHHHHHHHHHH-----------cCCCCcccceee
Q 047239 57 GKIVCTGAKSESQAKLAARKYARIVQK-----------IGFPVQFKDFKI 95 (180)
Q Consensus 57 GKivitGaks~~~~~~a~~~i~~~L~~-----------~g~~~~~~~~~i 95 (180)
|+..+|| +..+++.+++...|++ .|+.....++.|
T Consensus 39 g~~~~tG----~~~res~~~~~a~l~~~~~~~~~~~~~~g~~~~~~di~v 84 (187)
T 1xhk_A 39 HLLNISG----DIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEIYI 84 (187)
T ss_dssp EEESSCH----HHHHHHHHHHHHHHHHHHHTTSSCCCSSCCCSTTEEEEE
T ss_pred CceEEec----HHHHHHHHHHHHHHhhhhhcccccccccCCCCCCeeEEE
Confidence 7878888 7788888888888888 555555555554
No 174
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=32.61 E-value=84 Score=22.14 Aligned_cols=32 Identities=6% Similarity=0.173 Sum_probs=25.7
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIYPV 171 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~ 171 (180)
-|+++|.+|+.+ ++|+.+.++....++.++.-
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 478888899875 78999999988888876543
No 175
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=32.55 E-value=57 Score=21.89 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCcEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 56 SGKIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 56 SGKivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
+|.+.++|. .+.+..|.+.+..++++.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcc
Confidence 689999997 888888888888887653
No 176
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.53 E-value=53 Score=22.35 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEecCceEE-EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV-ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv-itGaks~~~~~~a~~~i~ 169 (180)
|+.+|..|++. ..|..+.+++.+.++.++
T Consensus 94 t~~~~~~G~~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 94 TIKILKKGQAVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp EEEEEETTEEEECCSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCcEEEcCCCCCHHHHHHHHHHhc
Confidence 35555777732 468888888888776654
No 177
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=31.93 E-value=35 Score=21.70 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=23.7
Q ss_pred eEEEEEecCc----eEEEEcccCHHHHHHHHHHHHHH
Q 047239 139 NVTMLIFLSG----KVVITGAKAREQIYAAFNNIYPV 171 (180)
Q Consensus 139 ~~t~lIF~sG----kivitGaks~~~~~~a~~~i~~~ 171 (180)
.+++.|=..| .|+|+|. . +.+..|.+.|..+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~-~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGD-P-QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEES-S-HHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcC-H-HHHHHHHHHHHHH
Confidence 4556666677 9999998 3 7899998888764
No 178
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=31.90 E-value=38 Score=26.87 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=18.9
Q ss_pred EEEEccCCHHHHHHHHHHHHH
Q 047239 59 IVCTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~~ 79 (180)
|.++||+|+++|+.+++.++.
T Consensus 89 v~V~gA~s~~~A~~iA~~Ia~ 109 (205)
T 3it4_B 89 VTVTGAATEDDALVAARQIAR 109 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 678999999999999998874
No 179
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=31.87 E-value=63 Score=23.21 Aligned_cols=31 Identities=10% Similarity=-0.053 Sum_probs=25.1
Q ss_pred EEEEEecCCcEE--EEccCCHHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIV--CTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 49 ~t~lIf~SGKiv--itGaks~~~~~~a~~~i~~ 79 (180)
.+++|..+|+++ ..|..+.+++...+++++.
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 578899999997 4688888888888877753
No 180
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=31.53 E-value=68 Score=22.48 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=23.9
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
.+++|.++|+|+ ..|..+.+++.+.++.++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 789999999997 4577778888777766543
No 181
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.43 E-value=55 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
|+.+|.+|+++ .+|..+.+.+...++..
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 112 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXV 112 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHHH
Confidence 78888999998 78999988877666553
No 182
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=30.11 E-value=45 Score=24.90 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=24.3
Q ss_pred cCceEEEEcccCHHHHHHHHHHHHHHHhhccc
Q 047239 146 LSGKVVITGAKAREQIYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 146 ~sGkivitGaks~~~~~~a~~~i~~~L~~~~~ 177 (180)
.+|+.++.|+ +.+++.++++.+.....+=++
T Consensus 160 vng~~~~~~~-~~e~l~~~i~~ll~k~r~~~~ 190 (193)
T 3hz8_A 160 VGGKYKVEFA-DWESGMNTIDLLADKVREEQK 190 (193)
T ss_dssp ETTTEEECCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCC-CHHHHHHHHHHHHHHHHHhhh
Confidence 3899998888 899999999888776554443
No 183
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=29.94 E-value=64 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=23.4
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|..|+++ ..|..+.+++.+.++.+.
T Consensus 87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 87 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 57778899885 789999999988887654
No 184
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=29.44 E-value=42 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=22.8
Q ss_pred EEEEecCceE--EEEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKV--VITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGki--vitGaks~~~~~~a~~~i~~ 170 (180)
|+.+|..|++ ...|..+.+++.+.++..++
T Consensus 171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~ 202 (210)
T 3apq_A 171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202 (210)
T ss_dssp EEEEECTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCceeEecCCCCHHHHHHHHHHhCc
Confidence 5667788986 45788888888888877654
No 185
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=29.37 E-value=53 Score=21.30 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=21.0
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVY 175 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~ 175 (180)
.+.|.|+|. .+.+..|.+.|..++.+-
T Consensus 50 ~r~v~I~G~--~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 50 GRQVTITGS--AASISLAQYLINARLSSE 76 (82)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHTC--
T ss_pred ceEEEEEcC--HHHHHHHHHHHHHHHHhh
Confidence 568899986 489999999998887653
No 186
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=29.19 E-value=99 Score=26.85 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=42.2
Q ss_pred cCCccceE----EEEecCC--c-EE------------------EEEe-cCCcEEEEccCCHHHHHHHHHHHHHHHH--Hc
Q 047239 33 NPSRFSAV----TMRIKEP--K-TT------------------ALIF-SSGKIVCTGAKSESQAKLAARKYARIVQ--KI 84 (180)
Q Consensus 33 ePe~fpgl----i~r~~~P--~-~t------------------~lIf-~SGKivitGaks~~~~~~a~~~i~~~L~--~~ 84 (180)
.|++|||+ .+|+..| + .| +.+- +.|.|++.|. +.+++... ...|. +.
T Consensus 85 ~~~~~p~~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv-~~e~l~~i----~~eL~~~~~ 159 (418)
T 3mm5_A 85 LGEQIPEVEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGT-RSEYLQPC----FEDLGNLEI 159 (418)
T ss_dssp TTTTCGGGSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEE-CHHHHHHH----HHHHHHSSS
T ss_pred CCccCCCcceEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCC-CHHHHHHH----HHHHhcccc
Confidence 68899984 5888888 3 22 4444 4688999988 56666544 44456 77
Q ss_pred CCCCcccceeeeeeEEE
Q 047239 85 GFPVQFKDFKIQNIVGS 101 (180)
Q Consensus 85 g~~~~~~~~~i~NIva~ 101 (180)
|+++....-.+.|++|.
T Consensus 160 Gl~~ggsG~~vRni~aC 176 (418)
T 3mm5_A 160 PFDIGGSGSDLRTPSAC 176 (418)
T ss_dssp CCCBCCCSSSBCCCEEC
T ss_pred cCCcCCccccccceEec
Confidence 87665444456788765
No 187
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=29.16 E-value=49 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.7
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
.|.|+|+|.. +.+..|.+.|..++.+
T Consensus 61 ~~~V~I~G~~--~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 61 SRLIKISGTQ--KEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEEEH--HHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCH--HHHHHHHHHHHHHHhh
Confidence 6899999974 4799999999888864
No 188
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=28.98 E-value=75 Score=22.77 Aligned_cols=30 Identities=3% Similarity=0.010 Sum_probs=24.7
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
.+++|...|+|+ ..|..+.+++.+.++.++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 578999999996 568878888888887765
No 189
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=28.65 E-value=41 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.5
Q ss_pred EEEEecCceEEE--EcccCHHHHHHHHHHHHHHHhh
Q 047239 141 TMLIFLSGKVVI--TGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 141 t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L~~ 174 (180)
+++|.+.|+|+- .|..+.+++...++.++.-+..
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~~ 174 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVII 174 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 899999999964 4777888888888777665543
No 190
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=28.56 E-value=76 Score=23.57 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred EEEEecCCc---EEEEccCCHHHHHHHHHHHHHHHHHcCCCCcc----------cceeeeeeEEEEecCcc---cchhhH
Q 047239 50 TALIFSSGK---IVCTGAKSESQAKLAARKYARIVQKIGFPVQF----------KDFKIQNIVGSCDVEFP---IKLERL 113 (180)
Q Consensus 50 t~lIf~SGK---ivitGaks~~~~~~a~~~i~~~L~~~g~~~~~----------~~~~i~NIva~~~~~~~---i~L~~l 113 (180)
|+.+|.+|+ ....|..+.+++..-+..+...- .-...... ....+.+..|+.+-+|. -.++++
T Consensus 81 t~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~-~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l 159 (226)
T 1a8l_A 81 ATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVS-REETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKF 159 (226)
T ss_dssp EEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHHH-HTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHH
T ss_pred eEEEEcCCceeeEEEeccCcHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHH
Confidence 788898984 56889988877766555544321 11111111 12335566666554443 234555
Q ss_pred hhhcC----CC---CccCCcCCcee--EEEecCCeEEEEEecCceEE--EEcccCHHHHHHHHHHH
Q 047239 114 NGFHA----MF---STYEPELFPGL--IYRMKKPNVTMLIFLSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 114 a~~~~----~~---~~YePe~fpgl--i~r~~~p~~t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (180)
+..+. .+ ...+-+..+.+ .|.+.. --|+.+|.+|+.+ ..|..+.+++.+.++..
T Consensus 160 ~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 160 AIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp HHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS-SCEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHhcccccCCcEEEEEEEcccCHHHHHhCCCcc-cCeEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence 54322 11 11111112211 122211 1257888999865 68999988887776654
No 191
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=28.53 E-value=41 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEecCceEEEEc--ccCHHHHHHHHHHHH
Q 047239 143 LIFLSGKVVITG--AKAREQIYAAFNNIY 169 (180)
Q Consensus 143 lIF~sGkivitG--aks~~~~~~a~~~i~ 169 (180)
.+|.+||.++.| +.+.+++.+.++.++
T Consensus 153 tfiINGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 153 AVVVNNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp EEEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred EEEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 345599977765 678888887776553
No 192
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=28.47 E-value=59 Score=23.74 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=24.2
Q ss_pred ecCCcEEEEccCCHHHHHHHHHHHHHHHHH
Q 047239 54 FSSGKIVCTGAKSESQAKLAARKYARIVQK 83 (180)
Q Consensus 54 f~SGKivitGaks~~~~~~a~~~i~~~L~~ 83 (180)
+-+|+..+.|+.+.++...+++.++...++
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~~~ 184 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKVRE 184 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 338998889998899999998888876553
No 193
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=28.34 E-value=70 Score=24.18 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=22.8
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..|..+.+++...++++.
T Consensus 87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 87 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 77888999985 789988888877666553
No 194
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=28.11 E-value=60 Score=22.27 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=21.6
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIYP 170 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 170 (180)
.++|=.+|+++ ..|..+.+++.+.++.++.
T Consensus 110 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 110 SVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34444899985 7788888888887766543
No 195
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=27.81 E-value=51 Score=22.34 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=19.6
Q ss_pred EEEEecCCcEEE--EccCCHHHHHHHHH
Q 047239 50 TALIFSSGKIVC--TGAKSESQAKLAAR 75 (180)
Q Consensus 50 t~lIf~SGKivi--tGaks~~~~~~a~~ 75 (180)
|+.+|.+|+++. .|..+.+++...++
T Consensus 99 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 99 TIILLKNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHT
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 566779999875 58888888776654
No 196
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=27.71 E-value=76 Score=24.51 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=26.6
Q ss_pred cCCcEEEEccCCHHHHHHHHHHHHHHHH----HcCCCCc
Q 047239 55 SSGKIVCTGAKSESQAKLAARKYARIVQ----KIGFPVQ 89 (180)
Q Consensus 55 ~SGKivitGaks~~~~~~a~~~i~~~L~----~~g~~~~ 89 (180)
..|++.+||- -.+.++++.+++...++ ++|++.+
T Consensus 36 G~g~~~itG~-~~~~~kES~~~a~s~~~~~~~~~g~~~~ 73 (200)
T 1rre_A 36 GKGKLTYTGS-LGEVMQESIQAALTVVRARAEKLGINPD 73 (200)
T ss_dssp CSSCEEEESS-BCHHHHHHHHHHHHHHHHTHHHHTCCTT
T ss_pred CCceEEEecC-chHHHHHHHHHHHHHHHHhHHhcCCCcc
Confidence 6788999996 44668888888888888 7888744
No 197
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=27.35 E-value=37 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=18.5
Q ss_pred EEEEecCce----EEEEcccCHHHHHHHHHH
Q 047239 141 TMLIFLSGK----VVITGAKAREQIYAAFNN 167 (180)
Q Consensus 141 t~lIF~sGk----ivitGaks~~~~~~a~~~ 167 (180)
|+.+|..|+ ....|..+.+++.+.++.
T Consensus 84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~ 114 (120)
T 1mek_A 84 TIKFFRNGDTASPKEYTAGREADDIVNWLKK 114 (120)
T ss_dssp EEEEEESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred EEEEEeCCCcCCcccccCccCHHHHHHHHHh
Confidence 455667787 456788888877766543
No 198
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=27.26 E-value=61 Score=26.20 Aligned_cols=34 Identities=18% Similarity=0.459 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcccce----------eeeeeEEEEe
Q 047239 70 AKLAARKYARIVQKIGFPVQFKDF----------KIQNIVGSCD 103 (180)
Q Consensus 70 ~~~a~~~i~~~L~~~g~~~~~~~~----------~i~NIva~~~ 103 (180)
-+++.+-|...|+++|+++..++| +.+||+|+..
T Consensus 31 ~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~ 74 (312)
T 4f9u_A 31 HQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTIN 74 (312)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEEC
Confidence 346888899999999997765544 3579999876
No 199
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=27.24 E-value=47 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEccCCHHHHHHHHHHHHH
Q 047239 59 IVCTGAKSESQAKLAARKYAR 79 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~~ 79 (180)
|.++||+|+++|+.+++.++.
T Consensus 95 v~V~GA~s~~~A~~iA~sIa~ 115 (215)
T 1vra_B 95 VEVTGAANDQEAGMVAKQIVG 115 (215)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcC
Confidence 679999999999999998873
No 200
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=27.00 E-value=81 Score=22.86 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=22.9
Q ss_pred ecCCcEEEEccCCHHHHHHHHHHHHHHHH
Q 047239 54 FSSGKIVCTGAKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 54 f~SGKivitGaks~~~~~~a~~~i~~~L~ 82 (180)
+-+|+.++.|+ +.++...+++.++..-+
T Consensus 160 ving~~~~~g~-~~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 160 VVNGRYMVTGH-DFEDTLRITDYLVSRER 187 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHHHH
Confidence 34899998999 99999999988876543
No 201
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=26.79 E-value=49 Score=26.38 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.4
Q ss_pred EEEEccCCHHHHHHHHHHHH
Q 047239 59 IVCTGAKSESQAKLAARKYA 78 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~ 78 (180)
|.++||+|+++|+.+++.++
T Consensus 88 V~V~GA~s~~~A~~vA~sIa 107 (213)
T 2v4i_B 88 VQVTGARDDAQAKRVGKTVV 107 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHc
Confidence 67899999999999999887
No 202
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=26.74 E-value=1e+02 Score=18.06 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=24.5
Q ss_pred EEEEccCCHHHHHHHHHHHHHHHHH-cCCCCc
Q 047239 59 IVCTGAKSESQAKLAARKYARIVQK-IGFPVQ 89 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~~~L~~-~g~~~~ 89 (180)
|.+.+.+|.++-+.-++.+.+.|.+ +|.+..
T Consensus 5 i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 5 VKMLEGRTDEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 4455677999999999999999986 687643
No 203
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=26.67 E-value=75 Score=25.36 Aligned_cols=29 Identities=7% Similarity=0.206 Sum_probs=26.1
Q ss_pred CCcEE-EEccCCHHHHHHHHHHHHHHHHHc
Q 047239 56 SGKIV-CTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 56 SGKiv-itGaks~~~~~~a~~~i~~~L~~~ 84 (180)
+||++ +.|+.++.+++.|++...+.+++.
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~~ 112 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIENE 112 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHhh
Confidence 59988 999999999999999999998764
No 204
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=26.65 E-value=67 Score=23.88 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=22.3
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+.+ ..|..+.+++...+++.+
T Consensus 195 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 195 KIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence 57888999875 679999988877666543
No 205
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=26.57 E-value=62 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=24.7
Q ss_pred CceEE-EEcccCHHHHHHHHHHHHHHHhhc
Q 047239 147 SGKVV-ITGAKAREQIYAAFNNIYPVLNVY 175 (180)
Q Consensus 147 sGkiv-itGaks~~~~~~a~~~i~~~L~~~ 175 (180)
|||++ |+|+.+..+++.|++.....+.++
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~~ 112 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIENE 112 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHhh
Confidence 58887 999888999999999998887653
No 206
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=26.49 E-value=86 Score=22.85 Aligned_cols=30 Identities=20% Similarity=0.006 Sum_probs=23.8
Q ss_pred EEEEEecCCcEEEE--ccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVCT--GAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivit--Gaks~~~~~~a~~~i~ 78 (180)
.+++|..+|+++-. |..+.+++...+++++
T Consensus 153 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 184 (190)
T 2vup_A 153 TSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184 (190)
T ss_dssp CEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 68999999999865 7778887777766654
No 207
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=26.48 E-value=1.2e+02 Score=20.95 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=24.9
Q ss_pred EEEEEecCC------cEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 49 TTALIFSSG------KIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 49 ~t~lIf~SG------KivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
|.+.|-..+ .|.++|. .+.+..|.+.+..++++.
T Consensus 42 akI~I~~~~~~~~er~V~I~G~--~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 42 VRIQFKQDDGTGPEKIAHIMGP--PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp CEEEECSSCSSSSEEEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCceeEEEEEeC--HHHHHHHHHHHHHHHhcc
Confidence 555565443 5889986 788888888888888764
No 208
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.45 E-value=51 Score=22.90 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEecCceEE--EEccc-------CHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAK-------AREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF~sGkiv--itGak-------s~~~~~~a~~~i 168 (180)
|+++|..|+++ +.|.. +.++++..++..
T Consensus 83 t~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 83 TIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp EEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 67788899875 67876 567777666553
No 209
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=26.30 E-value=1e+02 Score=21.20 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=23.4
Q ss_pred EEEEEecCCcEEE--EccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVC--TGAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivi--tGaks~~~~~~a~~~i~ 78 (180)
.+++|-.+|+++- .|..+.+++...+++++
T Consensus 120 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 120 SLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 5677779999965 48888888887777765
No 210
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=26.18 E-value=92 Score=21.33 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=21.4
Q ss_pred EEEEEecCCcEE--EEccCCHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIV--CTGAKSESQAKLAARKY 77 (180)
Q Consensus 49 ~t~lIf~SGKiv--itGaks~~~~~~a~~~i 77 (180)
.+++|..+|+++ ..|..+.++++..+++.
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 142 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLA 142 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence 567788999987 56777888776666554
No 211
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=26.08 E-value=58 Score=23.81 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=23.3
Q ss_pred ecCceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 145 FLSGKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 145 F~sGkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
|.+|+..+.|+.+.+++..+++.+..-..+
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~~~ 184 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKVRE 184 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 338998889988888989988887765443
No 212
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=26.03 E-value=1.2e+02 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=31.5
Q ss_pred EecCCcEEEEEecCCc-EEEEccCC------HHHHHHHHHHHHHHHHHcCC
Q 047239 43 RIKEPKTTALIFSSGK-IVCTGAKS------ESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 43 r~~~P~~t~lIf~SGK-ivitGaks------~~~~~~a~~~i~~~L~~~g~ 86 (180)
|-+.++.-+.|..+++ -++.|.-. ..++..++.++++.|.+.|+
T Consensus 116 ~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 116 MCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 3344555677888888 44444433 44999999999999998875
No 213
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=25.68 E-value=38 Score=24.84 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.5
Q ss_pred EEEEec-CceEE--EEcc-------cCHHHHHHHHHHHHHHHhhccc
Q 047239 141 TMLIFL-SGKVV--ITGA-------KAREQIYAAFNNIYPVLNVYVT 177 (180)
Q Consensus 141 t~lIF~-sGkiv--itGa-------ks~~~~~~a~~~i~~~L~~~~~ 177 (180)
|+++|. +|+++ ++|+ -+.++....++.+...|.+++.
T Consensus 103 T~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~ 149 (151)
T 3ph9_A 103 RIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQS 149 (151)
T ss_dssp EEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence 566776 89986 4798 5668888899998888888763
No 214
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.54 E-value=59 Score=22.11 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=24.0
Q ss_pred EEEEEecCC----cEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 49 TTALIFSSG----KIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 49 ~t~lIf~SG----KivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
+.+.+=.+| +|.++|.+ . .+..|.+.+..++++.
T Consensus 49 v~I~i~~~g~~~~~V~I~G~~-~-~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 49 VHIHFPVEGSGSDTVVIRGPS-S-DVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CEEECCCTTTTCCEEEEESCH-H-HHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCcceEEEEcCH-H-HHHHHHHHHHHHHhhh
Confidence 344444566 99999973 3 8888888888877654
No 215
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=25.52 E-value=67 Score=22.49 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=22.3
Q ss_pred EEEEecCceEEEEccc-CHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVVITGAK-AREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkivitGak-s~~~~~~a~~~i~ 169 (180)
+++|=.+|+|+-.|.. +.+++.+.++.+.
T Consensus 134 ~~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 134 IVIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 3444489999999998 8999988887653
No 216
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.50 E-value=95 Score=20.97 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=25.2
Q ss_pred cEEEEEecCC-------cEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 48 KTTALIFSSG-------KIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 48 ~~t~lIf~SG-------KivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
.|.+.|-.+| .|.++|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 47 DVNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHH
Confidence 3666676777 7999986 667777777777776543
No 217
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=25.35 E-value=75 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEe-cCceEE--EEcccCHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV--ITGAKAREQIYAAFNNI 168 (180)
Q Consensus 141 t~lIF-~sGkiv--itGaks~~~~~~a~~~i 168 (180)
++.++ .+|+|+ ..|..+.+++.+.++.+
T Consensus 107 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 107 TQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred eEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 34455 899985 57888888888877653
No 218
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=24.73 E-value=62 Score=23.38 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=22.7
Q ss_pred EEEEe-cCceEE--EEcc----------cCHHHHHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVV--ITGA----------KAREQIYAAFNNIYPVL 172 (180)
Q Consensus 141 t~lIF-~sGkiv--itGa----------ks~~~~~~a~~~i~~~L 172 (180)
|+.+| .+|+++ +.|. .+.+++.+.++.++..+
T Consensus 106 t~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 106 RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp EEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 67777 789987 6785 56777777777665543
No 219
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=24.65 E-value=55 Score=22.72 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=19.8
Q ss_pred EEEEecCceEEEEcccCHHHHHHHH
Q 047239 141 TMLIFLSGKVVITGAKAREQIYAAF 165 (180)
Q Consensus 141 t~lIF~sGkivitGaks~~~~~~a~ 165 (180)
++.+|..|+.+..|.-+.+++++.+
T Consensus 82 ~l~~~~dG~~v~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 82 VLFAVNEDKELCHYFLDSDVIGAYL 106 (107)
T ss_dssp EEEETTTTEEEECSSCCCHHHHHHH
T ss_pred eEEEEECCEEEEecCCCHHHHHHHh
Confidence 4557889999888988888877654
No 220
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=24.65 E-value=69 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=15.7
Q ss_pred cEEcCCccceEEEEecCCcEEEEEecCC
Q 047239 30 AEYNPSRFSAVTMRIKEPKTTALIFSSG 57 (180)
Q Consensus 30 ~~YePe~fpgli~r~~~P~~t~lIf~SG 57 (180)
+.|+|..| +.+++ .+..+|+|++|
T Consensus 74 vThe~~~f--iyF~~--g~~aiLlfKtg 97 (97)
T 4ds1_A 74 VTHEKGHF--VYFYI--GPLAFLVFKTA 97 (97)
T ss_dssp EEECTTEE--EEEEE--TTEEEEEEECC
T ss_pred EEEcCCcE--EEEEE--CCEEEEEEecC
Confidence 45566543 55555 35788999887
No 221
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=24.64 E-value=59 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.4
Q ss_pred cCceEEE--EcccCHHHHHHHHHHHH
Q 047239 146 LSGKVVI--TGAKAREQIYAAFNNIY 169 (180)
Q Consensus 146 ~sGkivi--tGaks~~~~~~a~~~i~ 169 (180)
.+|+..+ .|+.+.+++.++++.+.
T Consensus 158 vng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 158 VNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp ETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred ECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 3899888 89999999999888764
No 222
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=24.60 E-value=74 Score=21.36 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=17.9
Q ss_pred EEEecCce----EEEEcccCHHHHHHHHHH
Q 047239 142 MLIFLSGK----VVITGAKAREQIYAAFNN 167 (180)
Q Consensus 142 ~lIF~sGk----ivitGaks~~~~~~a~~~ 167 (180)
+.+|..|+ +...|.++.+++.+-++.
T Consensus 96 ~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 96 MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp EEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 44555553 567799999888877654
No 223
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=24.57 E-value=79 Score=22.93 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.4
Q ss_pred ecCceEEEEcccCHHHHHHHHHHHHHH
Q 047239 145 FLSGKVVITGAKAREQIYAAFNNIYPV 171 (180)
Q Consensus 145 F~sGkivitGaks~~~~~~a~~~i~~~ 171 (180)
|.+|+.++.|+ +.+++.++++.+..-
T Consensus 160 ving~~~~~g~-~~~~l~~~i~~~~~~ 185 (193)
T 2rem_A 160 VVNGRYMVTGH-DFEDTLRITDYLVSR 185 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHH
Confidence 33899888999 999999999887654
No 224
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=24.52 E-value=81 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.5
Q ss_pred CceEEEE--cccCHHHHHHHHHHHHHHH
Q 047239 147 SGKVVIT--GAKAREQIYAAFNNIYPVL 172 (180)
Q Consensus 147 sGkivit--Gaks~~~~~~a~~~i~~~L 172 (180)
+|+..+. |+.+.+++.++++.+..-.
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~ 186 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKE 186 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHH
Confidence 8999988 9999999999998887653
No 225
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=24.31 E-value=93 Score=22.44 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.2
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
+|.++++| +..+++.|++.....+.+
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~ 99 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGR 99 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhh
Confidence 57889999 799999999988887754
No 226
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=24.16 E-value=96 Score=22.40 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.9
Q ss_pred EEEEEecCC--------cEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 49 TTALIFSSG--------KIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 49 ~t~lIf~SG--------KivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
+.+.|..+| .+.++| +.+.+..|.+.+..+++..
T Consensus 116 a~I~i~~~~~~~~~~~~~v~I~G--~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 116 AEVVVPRDQTPDENDQVIVKIIG--HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CEEECCTTCCCCTTSEEEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred CeEEECCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHHHH
Confidence 677787777 688999 6788999998888888765
No 227
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=24.15 E-value=1.2e+02 Score=20.70 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=23.4
Q ss_pred EEEEEecCCcEEEE--ccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVCT--GAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivit--Gaks~~~~~~a~~~i~ 78 (180)
.+++|=.+|+++-. |..+.++++..+++++
T Consensus 123 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 154 (160)
T 3lor_A 123 SIILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154 (160)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 45666689999877 8888888887777665
No 228
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=24.03 E-value=1.1e+02 Score=20.50 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEe-cCceEEE--EcccCHHHHHHHHHHHH
Q 047239 141 TMLIF-LSGKVVI--TGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF-~sGkivi--tGaks~~~~~~a~~~i~ 169 (180)
++.++ ++|+++- .|..+.+++.+.++.++
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp EEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 45556 8999875 57778888888877654
No 229
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=23.83 E-value=57 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.7
Q ss_pred EEEEEecCCcEEEE---ccCCHHHHHHH
Q 047239 49 TTALIFSSGKIVCT---GAKSESQAKLA 73 (180)
Q Consensus 49 ~t~lIf~SGKivit---Gaks~~~~~~a 73 (180)
-++++|++|+++.. |+=+.++++.+
T Consensus 83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 83 PQAFYFVNGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp SEEEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred CeEEEEECCEEEEEeeccccCHHHHHHh
Confidence 48999999999987 55556655544
No 230
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.72 E-value=67 Score=21.46 Aligned_cols=27 Identities=7% Similarity=0.221 Sum_probs=18.0
Q ss_pred EEEecCceE-EEEcccCHHHHHHHHHHH
Q 047239 142 MLIFLSGKV-VITGAKAREQIYAAFNNI 168 (180)
Q Consensus 142 ~lIF~sGki-vitGaks~~~~~~a~~~i 168 (180)
+.+|..|++ ...|..+.+++.+.++..
T Consensus 81 ~~~~~~G~~~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 81 IYHCKDGEFRRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp EEEEETTEEEECCSCCCHHHHHHHHHTC
T ss_pred EEEEeCCeEEEeecCCCHHHHHHHHHHH
Confidence 445577875 256888888887776543
No 231
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=23.68 E-value=65 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=18.2
Q ss_pred EEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 141 TMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
|+.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l 117 (153)
T 2wz9_A 88 TFLFFKNSQKIDRLDGA-HAPELTKKVQRHA 117 (153)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence 45666788875 5675 5677766665544
No 232
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=23.56 E-value=85 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=26.1
Q ss_pred ceeEEEecCCeEEEEEecCceEEE--EcccCHHHHHHHHHHHHHHH
Q 047239 129 PGLIYRMKKPNVTMLIFLSGKVVI--TGAKAREQIYAAFNNIYPVL 172 (180)
Q Consensus 129 pgli~r~~~p~~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L 172 (180)
||..|.+...-.+++|.+.|+|+- .|.-+.+++.+.+..++..|
T Consensus 136 ~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 136 PGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp -----CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred CCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 344444444447899999999974 45556667776666655543
No 233
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=23.47 E-value=1.1e+02 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.8
Q ss_pred eEEEEcccCHHHHHHHHHHHHHHHhhc
Q 047239 149 KVVITGAKAREQIYAAFNNIYPVLNVY 175 (180)
Q Consensus 149 kivitGaks~~~~~~a~~~i~~~L~~~ 175 (180)
.|.|+| +++.+..|...|..++.+.
T Consensus 50 ~v~I~G--~~~~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 50 PLRIIG--DPYKVQQACEMVMDILRER 74 (164)
T ss_dssp EEEEEE--CHHHHHHHHHHHHHHTTCS
T ss_pred EEEEEc--CHHHHHHHHHHHHHHHHhc
Confidence 677888 4789999999999988754
No 234
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=23.34 E-value=1.2e+02 Score=20.69 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=27.7
Q ss_pred CcEEEEEecCC-cEEEEc-cCCHHHHH-HHHHHHHHHHHHcCC
Q 047239 47 PKTTALIFSSG-KIVCTG-AKSESQAK-LAARKYARIVQKIGF 86 (180)
Q Consensus 47 P~~t~lIf~SG-KivitG-aks~~~~~-~a~~~i~~~L~~~g~ 86 (180)
|.-++.++-+| +...+| ++|..+|+ .|++..+..|.+.+.
T Consensus 36 ~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 36 QKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp EEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 45677888899 787777 66777776 455566677776553
No 235
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=23.26 E-value=1.8e+02 Score=20.73 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=29.9
Q ss_pred cEEEEEecCCcEEEEccCC----HHHHHHHHHHHHHHHHHcCC
Q 047239 48 KTTALIFSSGKIVCTGAKS----ESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 48 ~~t~lIf~SGKivitGaks----~~~~~~a~~~i~~~L~~~g~ 86 (180)
+.-+.+..+++.++.|.-. ..++..++.++++.|++.|+
T Consensus 88 ~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 88 PGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp TEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3446677778877765543 56899999999999999885
No 236
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=23.18 E-value=1.1e+02 Score=21.56 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=20.3
Q ss_pred EEEEe-cCCcEEEE-ccC--CHHHHHHHHHHHH
Q 047239 50 TALIF-SSGKIVCT-GAK--SESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf-~SGKivit-Gak--s~~~~~~a~~~i~ 78 (180)
++.+| .+|+++-. |.. +.++....++++.
T Consensus 119 t~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 119 ELVFIDAEGKQLARMGFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp EEEEECTTCCEEEEECCCTTCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 55566 89998765 777 7777776666553
No 237
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=23.17 E-value=73 Score=23.60 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.6
Q ss_pred cCCcEEE--EccCCHHHHHHHHHHHH
Q 047239 55 SSGKIVC--TGAKSESQAKLAARKYA 78 (180)
Q Consensus 55 ~SGKivi--tGaks~~~~~~a~~~i~ 78 (180)
-+||..+ .|+.+.++...+++.++
T Consensus 158 vng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 158 VNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp ETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred ECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 4999988 89999999988887765
No 238
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=23.06 E-value=87 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.9
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVY 175 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~ 175 (180)
+|+.+++|+-+..+++.|++.....+.++
T Consensus 82 ~g~~ii~gg~dVs~V~sAve~~~~~~~~~ 110 (230)
T 3io0_A 82 HGIFIVLKAADVSDARRAVEIALKQTDKY 110 (230)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 48899999888999999999988887654
No 239
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=22.88 E-value=2.8e+02 Score=21.75 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=27.6
Q ss_pred EEecCCcEEEEEecCCcEEEEc-cCCHHHHHH-HHHHHHHHHHH
Q 047239 42 MRIKEPKTTALIFSSGKIVCTG-AKSESQAKL-AARKYARIVQK 83 (180)
Q Consensus 42 ~r~~~P~~t~lIf~SGKivitG-aks~~~~~~-a~~~i~~~L~~ 83 (180)
++..+|.-++.++-.|+...+| ++|..+|+. |++..++.|++
T Consensus 220 ~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 220 ERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3445677788899899887766 457766664 44555555543
No 240
>4fay_A Microcompartments protein; BMC domain, shell protein, glycerol-binding protein; 1.56A {Lactobacillus reuteri}
Probab=22.84 E-value=87 Score=25.64 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.6
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVY 175 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~ 175 (180)
.|+++++|+-+..+++.|++.-...+.++
T Consensus 110 ~g~~ii~gg~dVs~V~saVeaa~~~~~~~ 138 (258)
T 4fay_A 110 HGCLIIIGGDDPADARQAIRVALDNLHRT 138 (258)
T ss_dssp BCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHhhh
Confidence 49999999999999999988877776654
No 241
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=22.81 E-value=1.6e+02 Score=20.72 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.9
Q ss_pred CcEEEEEecCCcEEEEccCC----HHHHHHHHHHHHHHHHHcCC
Q 047239 47 PKTTALIFSSGKIVCTGAKS----ESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 47 P~~t~lIf~SGKivitGaks----~~~~~~a~~~i~~~L~~~g~ 86 (180)
.+.-+.+..+++.++.|--. ..++..++.++++.|.+.|+
T Consensus 82 ~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 82 GSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34457777888877776543 56999999999999998875
No 242
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=22.68 E-value=50 Score=19.85 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=14.3
Q ss_pred CceEEEEccc-CHHHHHHH
Q 047239 147 SGKVVITGAK-AREQIYAA 164 (180)
Q Consensus 147 sGkivitGak-s~~~~~~a 164 (180)
+|+++..|.. +.+++.+.
T Consensus 57 ~G~~~~~G~~~~~~~l~~~ 75 (77)
T 1ilo_A 57 DGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp TTEEEECSSCCCHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH
Confidence 8888888987 88887664
No 243
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=22.64 E-value=53 Score=23.50 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=28.0
Q ss_pred EEecCCcEEEEccCCHHHHHHHHHHHHHHHHHcCCCC
Q 047239 52 LIFSSGKIVCTGAKSESQAKLAARKYARIVQKIGFPV 88 (180)
Q Consensus 52 lIf~SGKivitGaks~~~~~~a~~~i~~~L~~~g~~~ 88 (180)
++|-||-+-..+..=+++++.+++++...|+..|...
T Consensus 29 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~l 65 (128)
T 3kjj_A 29 LIFLSGMVPENGETAAEQTADVLAQIDRWLAECGSDK 65 (128)
T ss_dssp EEEECCBCCSSCSSHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5777776544334457899999999999999998753
No 244
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=22.55 E-value=38 Score=23.65 Aligned_cols=33 Identities=27% Similarity=0.144 Sum_probs=23.4
Q ss_pred EEEEEecCceEEE--EcccCHHHHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVVI--TGAKAREQIYAAFNNIYPVL 172 (180)
Q Consensus 140 ~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L 172 (180)
.+++|-.+|+++- .|..+.+++.+.++.+...+
T Consensus 124 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~ 158 (164)
T 2h30_A 124 SWALIGKDGDVQRIVKGSINEAQALALIRNPNADL 158 (164)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3445558999864 58888999888887665433
No 245
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.44 E-value=1.3e+02 Score=17.63 Aligned_cols=31 Identities=10% Similarity=0.289 Sum_probs=24.5
Q ss_pred EEEEccCCHHHHHHHHHHHHHHHHH-cCCCCc
Q 047239 59 IVCTGAKSESQAKLAARKYARIVQK-IGFPVQ 89 (180)
Q Consensus 59 ivitGaks~~~~~~a~~~i~~~L~~-~g~~~~ 89 (180)
|.+.+.+|.++.+.-++.+.+.|.+ +|.+..
T Consensus 5 I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 5 LYIIEGRTDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4455667999999999999999986 687643
No 246
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=22.44 E-value=1.3e+02 Score=21.85 Aligned_cols=36 Identities=6% Similarity=0.017 Sum_probs=27.0
Q ss_pred EEEecCCcEEEEccC----CHHHHHHHHHHHHHHHHHcCC
Q 047239 51 ALIFSSGKIVCTGAK----SESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 51 ~lIf~SGKivitGak----s~~~~~~a~~~i~~~L~~~g~ 86 (180)
+.+..+++.++.|-- ...++..++.++++.|++.|+
T Consensus 100 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 556666666665543 356999999999999998875
No 247
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=22.35 E-value=27 Score=24.45 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=22.2
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHHHHHHcCC
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~~L~~~g~ 86 (180)
|+++|.+|+.+ ..|+.+....+...+.+...|.+.|.
T Consensus 76 T~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g~ 114 (118)
T 3evi_A 76 TIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGA 114 (118)
T ss_dssp EEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTTS
T ss_pred EEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcCC
Confidence 89999999996 45776432222333444445555553
No 248
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=22.22 E-value=78 Score=22.88 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.0
Q ss_pred ecCceEEEE--cccCHHHHHHHHHHHH
Q 047239 145 FLSGKVVIT--GAKAREQIYAAFNNIY 169 (180)
Q Consensus 145 F~sGkivit--Gaks~~~~~~a~~~i~ 169 (180)
+.+|+..+. |+.+.+++.++++.+.
T Consensus 167 ~ing~~~~~~~g~~~~~~l~~~i~~~l 193 (195)
T 3c7m_A 167 VVNGKYLIYTKSIKSIDAMADLIRELA 193 (195)
T ss_dssp EETTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred EECCEEEeccCCCCCHHHHHHHHHHHH
Confidence 338988776 8989999999988764
No 249
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=22.17 E-value=70 Score=22.30 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=23.7
Q ss_pred EEEEEecCCcEEEE--ccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVCT--GAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivit--Gaks~~~~~~a~~~i~ 78 (180)
.+++|..+|+++-. |..+.+++...+++++
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 135 SKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999865 7777887777777664
No 250
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=22.14 E-value=72 Score=22.72 Aligned_cols=34 Identities=9% Similarity=-0.076 Sum_probs=26.2
Q ss_pred EEEEe-cCCcEEE--EccCC-HHHHHHHHHHHHHHHHH
Q 047239 50 TALIF-SSGKIVC--TGAKS-ESQAKLAARKYARIVQK 83 (180)
Q Consensus 50 t~lIf-~SGKivi--tGaks-~~~~~~a~~~i~~~L~~ 83 (180)
|..+| .+|+++- .|..+ .++....+++.++..++
T Consensus 133 t~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 133 FYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYRK 170 (172)
T ss_dssp EEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhhc
Confidence 45556 8999974 69988 99998888888776654
No 251
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=22.14 E-value=1.4e+02 Score=21.47 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=27.6
Q ss_pred EEEEEecCceEEE--EcccCHHHHHHHHHHHHHHHh
Q 047239 140 VTMLIFLSGKVVI--TGAKAREQIYAAFNNIYPVLN 173 (180)
Q Consensus 140 ~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L~ 173 (180)
.+++|-.+|+|+- .|..+.+++.+.++.++..+.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 6788889999974 488889999888888777654
No 252
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=22.12 E-value=77 Score=18.95 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=17.2
Q ss_pred ecCceEEEEcccCHHHHHHHHHH
Q 047239 145 FLSGKVVITGAKAREQIYAAFNN 167 (180)
Q Consensus 145 F~sGkivitGaks~~~~~~a~~~ 167 (180)
|.+|++.+++.-+++++.++++.
T Consensus 35 ~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 35 LPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp TTTTEEEEEESSCHHHHHHHHHT
T ss_pred cCCCEEEEEecCCHHHHHHHHHH
Confidence 56788888887778887777653
No 253
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=21.73 E-value=2e+02 Score=20.27 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=31.4
Q ss_pred CcEEEEEecCCcEEEEccCC----HHHHHHHHHHHHHHHHHcCC
Q 047239 47 PKTTALIFSSGKIVCTGAKS----ESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 47 P~~t~lIf~SGKivitGaks----~~~~~~a~~~i~~~L~~~g~ 86 (180)
.+.-+.+..+++.++.|--. ..++..++.++++.|.+.|+
T Consensus 82 ~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 82 DAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34557788888887776543 57899999999999998875
No 254
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=21.71 E-value=1e+02 Score=21.43 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=23.3
Q ss_pred EEEEEecCCcEEEEccC-CHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVCTGAK-SESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivitGak-s~~~~~~a~~~i~ 78 (180)
.+++|=.+|+++-.|.. +.++++..++++.
T Consensus 133 ~~~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 133 YIVIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 45555699999999998 8988888777653
No 255
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=21.45 E-value=80 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
|+.+|.+|+++ ..|..+.+++...+++.+
T Consensus 171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHV 201 (210)
T ss_dssp EEEEECTTSCCEECCSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCceeEecCCCCHHHHHHHHHHhC
Confidence 67788999974 568888888777766554
No 256
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=21.37 E-value=1.2e+02 Score=22.33 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=26.4
Q ss_pred eEEEEEecC--------ceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 139 NVTMLIFLS--------GKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 139 ~~t~lIF~s--------GkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
.+.+.|... +.|+|+|.. +.+..|...|...|.+
T Consensus 134 ga~I~i~~~~~~~~~~~~~v~I~G~~--~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 134 GAWVQLSQKPDGINLQNRVVTVSGEP--EQNRKAVELIIQKIQE 175 (178)
T ss_dssp SCEEEECCCC----CCEEEEEEESSH--HHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCCCceEEEEEcCH--HHHHHHHHHHHHHHHh
Confidence 455666554 689999974 8999999999988765
No 257
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=21.22 E-value=1.1e+02 Score=20.82 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=21.9
Q ss_pred EEEEEecCCcEE--EEccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIV--CTGAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKiv--itGaks~~~~~~a~~~i~ 78 (180)
..+++-.+|+++ ..|..+.+++...+++++
T Consensus 109 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 140 (153)
T 2l5o_A 109 TSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW 140 (153)
T ss_dssp EEEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 344455899996 788888888877776654
No 258
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=20.93 E-value=1.1e+02 Score=21.00 Aligned_cols=30 Identities=17% Similarity=-0.034 Sum_probs=22.8
Q ss_pred EEEEEecCCcEEE--EccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVC--TGAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivi--tGaks~~~~~~a~~~i~ 78 (180)
.+++|-.+|+++- .|..+.+++...++++.
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 108 FTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp EEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 5677779999954 58888888877777665
No 259
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=20.87 E-value=96 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcccce----------eeeeeEEEEe
Q 047239 70 AKLAARKYARIVQKIGFPVQFKDF----------KIQNIVGSCD 103 (180)
Q Consensus 70 ~~~a~~~i~~~L~~~g~~~~~~~~----------~i~NIva~~~ 103 (180)
-+.+.+.|...|+++|+++..+.| +.+||+|+..
T Consensus 47 ~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~ 90 (309)
T 4fuu_A 47 HVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYK 90 (309)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEEC
Confidence 446789999999999997765433 4679999876
No 260
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.77 E-value=1.1e+02 Score=21.05 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.5
Q ss_pred EEEEEecCC----cEEEEccCCHHHHHHHHHHHHHHHHHc
Q 047239 49 TTALIFSSG----KIVCTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 49 ~t~lIf~SG----KivitGaks~~~~~~a~~~i~~~L~~~ 84 (180)
|.+.|-..| .|.++|. .+.+..|.+.+..++++.
T Consensus 48 ~~I~I~~~g~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 48 VNIHVPAPELQSDIIAITGL--AANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEECCCTTTTCCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCcceEEEEcC--HHHHHHHHHHHHHHHhhH
Confidence 556666666 9999997 377888888888777654
No 261
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=20.73 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=19% Similarity=-0.011 Sum_probs=22.7
Q ss_pred cCCcEEEEccCCHHHHHHHHHHHHHHHH
Q 047239 55 SSGKIVCTGAKSESQAKLAARKYARIVQ 82 (180)
Q Consensus 55 ~SGKivitGaks~~~~~~a~~~i~~~L~ 82 (180)
-+|+....|+ +.++...+++.++...+
T Consensus 160 vng~~~~~~~-~~e~l~~~i~~ll~k~r 186 (193)
T 3hz8_A 160 VGGKYKVEFA-DWESGMNTIDLLADKVR 186 (193)
T ss_dssp ETTTEEECCS-SHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCC-CHHHHHHHHHHHHHHHH
Confidence 4999999888 99999999888886654
No 262
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=20.51 E-value=1.3e+02 Score=22.69 Aligned_cols=32 Identities=6% Similarity=0.237 Sum_probs=0.0
Q ss_pred EEEEecCceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 141 TMLIFLSGKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 141 t~lIF~sGkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
|+ +|.+|+ .+.|+.+.+++.+.++.....+..
T Consensus 184 t~-v~~dG~-~~~G~~~~~~l~~~l~~~~~~~~~ 215 (216)
T 1eej_A 184 AV-VLSNGT-LVPGYQPPKEMKEFLDEHQKMTSG 215 (216)
T ss_dssp EE-ECTTSC-EEESCCCHHHHHHHHHHHHHHHHC
T ss_pred EE-EEcCCe-EecCCCCHHHHHHHHHHhhhhccC
No 263
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=20.51 E-value=66 Score=22.91 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=24.1
Q ss_pred EEEEEecCCcEEEE--ccCCHHHHHHHHHHHH
Q 047239 49 TTALIFSSGKIVCT--GAKSESQAKLAARKYA 78 (180)
Q Consensus 49 ~t~lIf~SGKivit--Gaks~~~~~~a~~~i~ 78 (180)
.+++|..+|+|+-. |..+.+++...+++++
T Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (171)
T 3cmi_A 136 EKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167 (171)
T ss_dssp CEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999876 6677888777777664
No 264
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=20.48 E-value=1.1e+02 Score=24.47 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCcEEEEccCCHHHHHHHHHHHHHHHHH-cCC
Q 047239 56 SGKIVCTGAKSESQAKLAARKYARIVQK-IGF 86 (180)
Q Consensus 56 SGKivitGaks~~~~~~a~~~i~~~L~~-~g~ 86 (180)
+|++++.|+-++.+++.|++...+.+++ +++
T Consensus 82 ~g~~ii~gg~dVs~V~sAve~~~~~~~~~~~~ 113 (230)
T 3io0_A 82 HGIFIVLKAADVSDARRAVEIALKQTDKYLGN 113 (230)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999875 444
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=20.46 E-value=88 Score=22.42 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=26.4
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhhcccc
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNVYVTY 178 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~~~~~ 178 (180)
...++.|...+++++...++.|...|.++.+.
T Consensus 146 ~~~~i~~~~~~~~ev~~~v~~i~~~l~~~~~~ 177 (180)
T 3iij_A 146 EEIVHQLPSNKPEELENNVDQILKWIEQWIKD 177 (180)
T ss_dssp GGGEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36777788899999999999999999887643
No 266
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=20.44 E-value=81 Score=21.12 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=22.8
Q ss_pred cEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHHHH
Q 047239 48 KTTALIFSSGKIVCTGAKSESQAKLAARKYARIVQK 83 (180)
Q Consensus 48 ~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L~~ 83 (180)
.+-+.+.-.|. .+.+..+-+|++.|++...+.|++
T Consensus 49 ~~ei~i~~~g~-~l~a~~~~~d~y~Aid~a~dkler 83 (96)
T 3tqm_A 49 IVDANVKLPGS-TINAQAESDDMYKTVDLLMHKLET 83 (96)
T ss_dssp EEEEEEEETTE-EEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCc-EEEEEEecCCHHHHHHHHHHHHHH
Confidence 46777877888 455555666777766666655543
No 267
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=20.43 E-value=87 Score=22.78 Aligned_cols=50 Identities=24% Similarity=0.364 Sum_probs=33.4
Q ss_pred cceEEEEecCCcEEEE-EecCCcEEEEccC--CHHHHHHHHHHHHHHHHHcCC
Q 047239 37 FSAVTMRIKEPKTTAL-IFSSGKIVCTGAK--SESQAKLAARKYARIVQKIGF 86 (180)
Q Consensus 37 fpgli~r~~~P~~t~l-If~SGKivitGak--s~~~~~~a~~~i~~~L~~~g~ 86 (180)
|+--++-+.++.-.++ -.++|.+-.-|++ +...|..|++.+.+.++++|+
T Consensus 25 ~NNTivtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi 77 (129)
T 2vqe_K 25 YNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGM 77 (129)
T ss_dssp SSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEEEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4455556666654333 4445777666664 467788888999998888886
No 268
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=20.34 E-value=1.7e+02 Score=19.99 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=23.3
Q ss_pred EEEEEecCceEE--EEcccCHHHHHHHHHHHH
Q 047239 140 VTMLIFLSGKVV--ITGAKAREQIYAAFNNIY 169 (180)
Q Consensus 140 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (180)
.+++|=..|+|+ ..|..+.+++.+.++.++
T Consensus 120 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 120 SLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 566777999995 458888888888887764
No 269
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.27 E-value=1.7e+02 Score=21.09 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.1
Q ss_pred CceEEEEcccCHHHHHHHHHHHHHHHhh
Q 047239 147 SGKVVITGAKAREQIYAAFNNIYPVLNV 174 (180)
Q Consensus 147 sGkivitGaks~~~~~~a~~~i~~~L~~ 174 (180)
.|.|.|++. +.+.+..|.+.|..+|..
T Consensus 73 ~lhV~I~a~-~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTAN-TMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 467777764 689999999999999865
No 270
>3hrg_A Uncharacterized protein BT_3980 with actin-like A fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.23 E-value=2.8e+02 Score=21.96 Aligned_cols=83 Identities=7% Similarity=0.060 Sum_probs=56.6
Q ss_pred eEEEEecCCcEEEEEecCCcEEEEccCCHHHHHHHHHHHHHHHHHcCCCCcccceeeeeeEEEEecCcccchhhHhhhcC
Q 047239 39 AVTMRIKEPKTTALIFSSGKIVCTGAKSESQAKLAARKYARIVQKIGFPVQFKDFKIQNIVGSCDVEFPIKLERLNGFHA 118 (180)
Q Consensus 39 gli~r~~~P~~t~lIf~SGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~~~~~~i~NIva~~~~~~~i~L~~la~~~~ 118 (180)
.+.+-+.+-.+.+.+|..||+...=.=+.+.+..++--++-.++.+|++.......+ +++++-.=++-+...++.
T Consensus 162 ~ly~~~~~~~~~i~~f~~~kL~f~NsF~~~~~~D~lYYlL~v~~QL~ld~e~~~l~l-----~G~i~~~~~l~~~L~~Yi 236 (257)
T 3hrg_A 162 KMYASVRKDAIDIYCFERGQLLLANSFECMQTEDRIYYLLYVWKQLEFNQERDELHL-----TGTLSDKETLMNELKKFI 236 (257)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEECCSHHHHHHHHHHHHHHTTCCTTTCEEEE-----EECCTTHHHHHHHHHHHC
T ss_pred EEEEEEECCEEEEEEEECCEEEEEEeEecCCHHHHHHHHHHHHHHcCCCccccEEEE-----EecCCCcHHHHHHHHHHH
Confidence 366667778899999999999987666666777778888999999999876544443 455554444444444444
Q ss_pred CCCc-cCCc
Q 047239 119 MFST-YEPE 126 (180)
Q Consensus 119 ~~~~-YePe 126 (180)
.++. .+|+
T Consensus 237 ~~v~~~~p~ 245 (257)
T 3hrg_A 237 LQVFIMNPA 245 (257)
T ss_dssp SCEEECSSS
T ss_pred hhEEEeCcc
Confidence 4443 3454
No 271
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=20.13 E-value=1.3e+02 Score=21.60 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=25.7
Q ss_pred CCcEEEEccCCHHHHHHHHHHHHHHHHH-cCCC
Q 047239 56 SGKIVCTGAKSESQAKLAARKYARIVQK-IGFP 87 (180)
Q Consensus 56 SGKivitGaks~~~~~~a~~~i~~~L~~-~g~~ 87 (180)
+|-++++| ++.+++.|++...+.+++ +||.
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~~l~f~ 104 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGRLLNYT 104 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHHHHCCB
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhhccCeE
Confidence 58888999 999999999999999864 6663
No 272
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.12 E-value=8.3 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=23.8
Q ss_pred EEEEecCCcEE--EEccCCHHHHHHHHHHHHHHHHHc
Q 047239 50 TALIFSSGKIV--CTGAKSESQAKLAARKYARIVQKI 84 (180)
Q Consensus 50 t~lIf~SGKiv--itGaks~~~~~~a~~~i~~~L~~~ 84 (180)
|+.+|.+|+++ ..|..+.+++...+++...+++.+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~~ 126 (137)
T 2dj0_A 90 TLILFQGGKEAMRRPQIDKKGRAVSWTFSEENVIREF 126 (137)
T ss_dssp EEEEESSSSEEEEESCBCSSSCBCCCCCCHHHHHHHH
T ss_pred EEEEEECCEEEEEecCcCchHHHHHHHhcccchhhee
Confidence 77888999987 678877776655554444444443
Done!