BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047240
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 67.8 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
T FWDF+ P + F DAM +DS+LI + + DC VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 63 RAIATGF 69
+ I F
Sbjct: 204 KIICETF 210
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 65.1 bits (157), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 3 TFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMA 62
T FWDF+ P + F DA +DS+LI + + DC VF GL+S+VDVGGGTGT A
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 63 RAIATGF 69
+ I F
Sbjct: 204 KIICETF 210
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67
W+F+ P +++ DA+ +DS++I + ++DC VF+GL+S+VDVGGG GT + I
Sbjct: 155 LWEFLNKNPEYNTLYNDALASDSKMINLA-MKDCNLVFEGLESIVDVGGGNGTTGKIICE 213
Query: 68 GF 69
F
Sbjct: 214 TF 215
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 1 QTTFR----KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDV 54
QT F + FWDF+ +E + S+F DAM +DS + +V+ E+ K VF+GL+SLVDV
Sbjct: 138 QTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQEN-KRVFEGLESLVDV 196
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 1 QTTFR----KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDV 54
QT F + FWDF+ +E + S+F DAM +DS + +V+ E+ K VF+GL+SLVDV
Sbjct: 141 QTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQEN-KRVFEGLESLVDV 199
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 1 QTTFR----KKFWDFVA--AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDV 54
QT F + FWDF+ +E + S+F DAM +DS + +V+ E+ K VF+GL+SLVDV
Sbjct: 142 QTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQEN-KRVFEGLESLVDV 200
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 9 WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68
+++ +P +F M +D IT+ I + F+GLKSLVDVGGGTG + I +
Sbjct: 163 FEYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK 221
Query: 69 F 69
+
Sbjct: 222 Y 222
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 9 WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68
+++ +P +F + M S +IT ++E F+GL +LVDVGGG G AIA
Sbjct: 164 FEYHGTDPRFNRVFNEGMKNHSIIITKKLLE-LYHGFEGLGTLVDVGGGVGATVAAIAAH 222
Query: 69 F 69
+
Sbjct: 223 Y 223
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 9 WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68
+D+ + + +F M ++S IT+ I + F+GL ++VDVGGGTG +A I
Sbjct: 166 FDYHGTDHRINKVFNKGMSSNST-ITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAK 224
Query: 69 F 69
+
Sbjct: 225 Y 225
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 4 FRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMAR 63
+ + FW+ ++A+ L F DA+++ E + D + + ++ ++DVGGG G M
Sbjct: 141 YGRPFWEDLSADVALADSF-DALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLA 198
Query: 64 AIA 66
AIA
Sbjct: 199 AIA 201
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 8 FWDFVAAEPNLESIFYDAM--IADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAI 65
FW +P +F A ++ +E + D F G + VD+GGG G++ A+
Sbjct: 165 FWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD----FSGAATAVDIGGGRGSLXAAV 220
Query: 66 ATGF 69
F
Sbjct: 221 LDAF 224
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 9 WDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTG 59
++F+ + + IF +M+ D + + + F+G+ +LVDVGGG+G
Sbjct: 172 YEFMGKDKKMNQIFNKSMV-DVCATEMKRMLEIYTGFEGISTLVDVGGGSG 221
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 12 VAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69
V E NL F + ++++ +++E+ K G+K ++DVGGG G ++ A+ F
Sbjct: 159 VTREDNL--YFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF 212
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 45 FKGLKSLVDVGGGTGTMARAI 65
F+G +S VDVGGG+G + +AI
Sbjct: 166 FRG-RSFVDVGGGSGELTKAI 185
>pdb|3U43|B Chain B, Crystal Structure Of The Colicin E2 Dnase-Im2 Complex
Length = 134
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P+L F
Sbjct: 53 FRKKFWEEVSKDPDLSKQF 71
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 45 FKGLKSLVDVGGGTG 59
F+G+ +LVDVGGG+G
Sbjct: 207 FEGISTLVDVGGGSG 221
>pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 In Complex With Its
Inhibitor Im7 Protein
Length = 206
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 125 FRKKFWEEVSKDPELSKQF 143
>pdb|3GKL|A Chain A, Following Evolutionary Paths To High Affinity And
Selectivity Protein-Protein Interactions Using Colicin7
And Immunity Proteins
pdb|3GKL|B Chain B, Following Evolutionary Paths To High Affinity And
Selectivity Protein-Protein Interactions Using Colicin7
And Immunity Proteins
pdb|3GJN|B Chain B, Following Evolutionary Paths To High Affinity And
Selectivity Protein-Protein Interactions Using Colicin7
And Immunity Proteins
pdb|3GJN|C Chain C, Following Evolutionary Paths To High Affinity And
Selectivity Protein-Protein Interactions Using Colicin7
And Immunity Proteins
Length = 141
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 60 FRKKFWEEVSKDPELSKQF 78
>pdb|2ERH|B Chain B, Crystal Structure Of The E7_gIM7_G COMPLEX; A DESIGNED
Interface Between The Colicin E7 Dnase And The Im7
Immunity Protein
Length = 127
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 49 FRKKFWEEVSKDPELSKQF 67
>pdb|1ZNS|A Chain A, Crystal Structure Of N-Cole712-Bp DnaZN COMPLEX
pdb|1ZNV|B Chain B, How A His-Metal Finger Endonuclease Cole7 Binds And
Cleaves Dna With A Transition Metal Ion Cofactor
pdb|1ZNV|D Chain D, How A His-Metal Finger Endonuclease Cole7 Binds And
Cleaves Dna With A Transition Metal Ion Cofactor
Length = 134
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 53 FRKKFWEEVSKDPELSKQF 71
>pdb|3FBD|A Chain A, Crystal Structure Of The Nuclease Domain Of Cole7(D493q
Mutant) In Complex With An 18-Bp Duplex Dna
pdb|3FBD|D Chain D, Crystal Structure Of The Nuclease Domain Of Cole7(D493q
Mutant) In Complex With An 18-Bp Duplex Dna
Length = 132
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 51 FRKKFWEEVSKDPELSKQF 69
>pdb|1PT3|A Chain A, Crystal Structures Of Nuclease-Cole7 Complexed With
Octamer Dna
pdb|1PT3|B Chain B, Crystal Structures Of Nuclease-Cole7 Complexed With
Octamer Dna
Length = 128
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 47 FRKKFWEEVSKDPELSKQF 65
>pdb|2IVH|A Chain A, Crystal Structure Of The Nuclease Domain Of Cole7 (H545q
Mutant) In Complex With An 18-Bp Duplex Dna
Length = 128
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 47 FRKKFWEEVSKDPELSKQF 65
>pdb|1M08|A Chain A, Crystal Structure Of The Unbound Nuclease Domain Of
Cole7
pdb|1M08|B Chain B, Crystal Structure Of The Unbound Nuclease Domain Of
Cole7
Length = 131
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 50 FRKKFWEEVSKDPELSKQF 68
>pdb|2JAZ|B Chain B, Crystal Structure Of The Mutant N560d Of The Nuclease
Domain Of Cole7 In Complex With Im7
pdb|2JAZ|D Chain D, Crystal Structure Of The Mutant N560d Of The Nuclease
Domain Of Cole7 In Complex With Im7
Length = 131
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 50 FRKKFWEEVSKDPELSKQF 68
>pdb|2JBG|B Chain B, Crystal Structure Of The Mutant N560a Of The Nuclease
Domain Of Cole7 In Complex With Im7
pdb|2JBG|D Chain D, Crystal Structure Of The Mutant N560a Of The Nuclease
Domain Of Cole7 In Complex With Im7
Length = 131
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 50 FRKKFWEEVSKDPELSKQF 68
>pdb|2JB0|B Chain B, Crystal Structure Of The Mutant H573a Of The Nuclease
Domain Of Cole7 In Complex With Im7
Length = 131
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 50 FRKKFWEEVSKDPELSKQF 68
>pdb|1MZ8|B Chain B, Crystal Structures Of The Nuclease Domain Of Cole7IM7 IN
Complex With A Phosphate Ion And A Zinc Ion
pdb|1MZ8|D Chain D, Crystal Structures Of The Nuclease Domain Of Cole7IM7 IN
Complex With A Phosphate Ion And A Zinc Ion
Length = 131
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 50 FRKKFWEEVSKDPELSKQF 68
>pdb|1UJZ|B Chain B, Crystal Structure Of The E7_cIM7_C COMPLEX; A
Computationally Designed Interface Between The Colicin
E7 Dnase And The Im7 Immunity Protein
Length = 128
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 FRKKFWDFVAAEPNLESIF 22
FRKKFW+ V+ +P L F
Sbjct: 50 FRKKFWEEVSKDPELSKQF 68
>pdb|1HUX|A Chain A, Crystal Structure Of The Acidaminococcus Fermentans
(R)-2- Hydroxyglutaryl-Coa Dehydratase Component A
pdb|1HUX|B Chain B, Crystal Structure Of The Acidaminococcus Fermentans
(R)-2- Hydroxyglutaryl-Coa Dehydratase Component A
Length = 270
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIA 66
++++D KE+ KSLV VG GT AR+I+
Sbjct: 18 IILKDGKEIVA--KSLVAVGTGTSGPARSIS 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,932,032
Number of Sequences: 62578
Number of extensions: 57872
Number of successful extensions: 297
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 36
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)