Query 047240
Match_columns 71
No_of_seqs 176 out of 1032
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.7 5.2E-18 1.1E-22 103.3 5.6 67 3-71 57-124 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.3 2.2E-12 4.7E-17 82.4 5.8 69 2-71 133-201 (342)
3 TIGR02716 C20_methyl_CrtF C-20 98.7 5.2E-08 1.1E-12 61.3 6.1 50 20-71 123-173 (306)
4 PRK06922 hypothetical protein; 98.2 4.3E-06 9.4E-11 57.8 6.0 64 6-71 377-442 (677)
5 PRK08287 cobalt-precorrin-6Y C 97.4 0.00028 6.1E-09 41.6 3.9 49 21-71 5-55 (187)
6 PRK14103 trans-aconitate 2-met 97.3 0.00069 1.5E-08 41.7 4.8 35 35-71 19-53 (255)
7 PF12847 Methyltransf_18: Meth 97.1 0.00076 1.7E-08 36.1 3.2 24 48-71 2-25 (112)
8 TIGR02469 CbiT precorrin-6Y C5 97.1 0.002 4.3E-08 34.9 4.8 33 37-71 11-43 (124)
9 PRK01683 trans-aconitate 2-met 97.0 0.0022 4.9E-08 39.3 5.2 36 34-71 20-55 (258)
10 TIGR02021 BchM-ChlM magnesium 96.9 0.005 1.1E-07 37.0 6.1 62 7-68 15-76 (219)
11 PF05175 MTS: Methyltransferas 96.6 0.0053 1.2E-07 35.8 4.1 34 36-71 22-55 (170)
12 TIGR00091 tRNA (guanine-N(7)-) 96.5 0.0038 8.2E-08 37.1 3.4 25 47-71 16-40 (194)
13 PRK15001 SAM-dependent 23S rib 96.5 0.0056 1.2E-07 40.3 4.3 35 35-71 218-252 (378)
14 TIGR00755 ksgA dimethyladenosi 96.5 0.008 1.7E-07 37.1 4.7 35 34-70 18-52 (253)
15 PF13679 Methyltransf_32: Meth 96.5 0.0054 1.2E-07 34.8 3.6 23 45-67 23-45 (141)
16 COG4106 Tam Trans-aconitate me 96.5 0.0059 1.3E-07 37.9 3.9 36 34-71 19-54 (257)
17 PRK07402 precorrin-6B methylas 96.4 0.0067 1.5E-07 36.0 4.1 32 37-70 32-63 (196)
18 PRK14121 tRNA (guanine-N(7)-)- 96.4 0.007 1.5E-07 40.1 4.3 33 37-71 114-146 (390)
19 PRK00274 ksgA 16S ribosomal RN 96.4 0.0098 2.1E-07 37.2 4.8 35 34-70 31-65 (272)
20 smart00650 rADc Ribosomal RNA 96.3 0.0079 1.7E-07 34.9 3.9 32 35-68 3-34 (169)
21 PRK15068 tRNA mo(5)U34 methylt 96.3 0.0087 1.9E-07 38.4 4.2 24 47-70 122-145 (322)
22 PRK11036 putative S-adenosyl-L 96.2 0.014 3.1E-07 35.9 4.8 23 47-69 44-66 (255)
23 PRK07580 Mg-protoporphyrin IX 96.2 0.023 5.1E-07 34.1 5.6 24 46-69 62-85 (230)
24 PF02390 Methyltransf_4: Putat 96.2 0.01 2.2E-07 35.6 3.9 25 47-71 17-41 (195)
25 COG2813 RsmC 16S RNA G1207 met 96.1 0.012 2.6E-07 37.7 4.2 36 34-71 147-182 (300)
26 PRK11207 tellurite resistance 96.1 0.011 2.4E-07 35.3 3.7 33 34-68 19-51 (197)
27 PRK10258 biotin biosynthesis p 96.0 0.037 7.9E-07 33.9 5.8 49 18-68 9-63 (251)
28 TIGR00080 pimt protein-L-isoas 96.0 0.024 5.1E-07 34.2 4.8 33 36-70 68-100 (215)
29 PRK00107 gidB 16S rRNA methylt 96.0 0.03 6.4E-07 33.5 5.1 24 48-71 46-69 (187)
30 PRK00121 trmB tRNA (guanine-N( 95.9 0.016 3.4E-07 34.8 3.9 32 37-71 33-64 (202)
31 TIGR01934 MenG_MenH_UbiE ubiqu 95.9 0.018 4E-07 34.1 4.2 33 36-70 30-62 (223)
32 PRK09489 rsmC 16S ribosomal RN 95.9 0.018 4E-07 37.4 4.4 35 35-71 186-220 (342)
33 PRK08317 hypothetical protein; 95.9 0.021 4.5E-07 34.0 4.3 32 36-69 10-41 (241)
34 PRK14896 ksgA 16S ribosomal RN 95.9 0.021 4.5E-07 35.5 4.4 34 34-69 18-51 (258)
35 TIGR02752 MenG_heptapren 2-hep 95.8 0.023 5E-07 34.2 4.2 32 36-69 36-67 (231)
36 COG2226 UbiE Methylase involve 95.7 0.012 2.6E-07 36.6 2.8 24 47-70 51-74 (238)
37 PRK04457 spermidine synthase; 95.7 0.015 3.3E-07 36.3 3.3 25 47-71 66-90 (262)
38 TIGR02072 BioC biotin biosynth 95.7 0.014 3.1E-07 34.8 3.1 23 48-70 35-57 (240)
39 PRK06202 hypothetical protein; 95.7 0.031 6.7E-07 33.9 4.6 23 46-68 59-81 (232)
40 PF05185 PRMT5: PRMT5 arginine 95.6 0.045 9.7E-07 36.9 5.5 54 8-68 152-207 (448)
41 PRK00216 ubiE ubiquinone/menaq 95.6 0.03 6.6E-07 33.5 4.3 32 37-70 43-74 (239)
42 PF13847 Methyltransf_31: Meth 95.6 0.019 4E-07 32.6 3.2 24 47-70 3-27 (152)
43 TIGR00138 gidB 16S rRNA methyl 95.6 0.012 2.7E-07 34.8 2.5 24 47-70 42-65 (181)
44 TIGR03438 probable methyltrans 95.5 0.029 6.3E-07 35.6 4.1 24 47-70 63-86 (301)
45 COG0220 Predicted S-adenosylme 95.4 0.034 7.4E-07 34.3 4.0 24 48-71 49-72 (227)
46 PF02353 CMAS: Mycolic acid cy 95.4 0.027 5.8E-07 35.5 3.5 33 35-69 52-84 (273)
47 TIGR03534 RF_mod_PrmC protein- 95.3 0.048 1E-06 33.1 4.5 24 48-71 88-111 (251)
48 PRK11805 N5-glutamine S-adenos 95.3 0.019 4.1E-07 36.7 2.8 23 49-71 135-157 (307)
49 TIGR00477 tehB tellurite resis 95.3 0.034 7.3E-07 33.1 3.6 32 35-68 20-51 (195)
50 PRK13942 protein-L-isoaspartat 95.3 0.058 1.3E-06 32.6 4.7 32 36-69 67-98 (212)
51 TIGR00452 methyltransferase, p 95.3 0.051 1.1E-06 35.0 4.6 25 46-70 120-144 (314)
52 TIGR00740 methyltransferase, p 95.3 0.028 6.1E-07 34.2 3.4 24 46-69 52-75 (239)
53 COG2890 HemK Methylase of poly 95.2 0.042 9.1E-07 34.8 4.2 22 50-71 113-134 (280)
54 TIGR00438 rrmJ cell division p 95.1 0.06 1.3E-06 31.7 4.4 32 37-69 23-54 (188)
55 TIGR03533 L3_gln_methyl protei 95.1 0.031 6.7E-07 35.3 3.3 24 48-71 122-145 (284)
56 PTZ00098 phosphoethanolamine N 95.1 0.052 1.1E-06 33.8 4.1 34 34-69 41-74 (263)
57 PRK13944 protein-L-isoaspartat 95.1 0.075 1.6E-06 31.9 4.7 25 45-69 70-94 (205)
58 COG2242 CobL Precorrin-6B meth 94.9 0.061 1.3E-06 32.4 3.9 27 45-71 32-58 (187)
59 PRK11188 rrmJ 23S rRNA methylt 94.9 0.062 1.3E-06 32.5 4.0 33 36-69 41-73 (209)
60 PF13489 Methyltransf_23: Meth 94.8 0.087 1.9E-06 29.5 4.4 23 46-68 21-43 (161)
61 PRK15451 tRNA cmo(5)U34 methyl 94.8 0.04 8.8E-07 33.9 3.1 23 46-68 55-77 (247)
62 PRK09328 N5-glutamine S-adenos 94.8 0.087 1.9E-06 32.5 4.6 24 47-70 108-131 (275)
63 PRK14966 unknown domain/N5-glu 94.8 0.064 1.4E-06 36.0 4.1 25 47-71 251-275 (423)
64 PLN02336 phosphoethanolamine N 94.6 0.073 1.6E-06 35.6 4.2 34 34-69 26-59 (475)
65 TIGR00537 hemK_rel_arch HemK-r 94.6 0.06 1.3E-06 31.4 3.4 25 46-70 18-42 (179)
66 PTZ00338 dimethyladenosine tra 94.6 0.099 2.1E-06 33.4 4.6 34 34-69 25-58 (294)
67 TIGR00536 hemK_fam HemK family 94.5 0.044 9.5E-07 34.5 2.8 22 49-70 116-137 (284)
68 PF00398 RrnaAD: Ribosomal RNA 94.5 0.049 1.1E-06 33.9 3.0 35 33-69 18-52 (262)
69 TIGR03587 Pse_Me-ase pseudamin 94.5 0.059 1.3E-06 32.5 3.3 25 46-70 42-66 (204)
70 PRK11088 rrmA 23S rRNA methylt 94.5 0.058 1.3E-06 33.6 3.3 24 47-70 85-108 (272)
71 PF06080 DUF938: Protein of un 94.4 0.097 2.1E-06 32.0 4.1 26 46-71 23-49 (204)
72 PLN02366 spermidine synthase 94.3 0.056 1.2E-06 34.7 3.1 23 46-68 90-112 (308)
73 PRK01544 bifunctional N5-gluta 94.3 0.047 1E-06 37.2 2.8 23 49-71 140-162 (506)
74 PRK13943 protein-L-isoaspartat 94.3 0.14 3E-06 33.2 4.8 26 45-70 78-103 (322)
75 PRK11705 cyclopropane fatty ac 94.3 0.15 3.3E-06 33.6 5.0 31 37-69 159-189 (383)
76 PLN02244 tocopherol O-methyltr 94.3 0.1 2.2E-06 33.7 4.2 24 46-69 117-140 (340)
77 TIGR00406 prmA ribosomal prote 94.2 0.048 1E-06 34.4 2.6 43 22-68 138-180 (288)
78 PLN02336 phosphoethanolamine N 94.1 0.11 2.3E-06 34.7 4.2 33 35-69 256-288 (475)
79 PLN02490 MPBQ/MSBQ methyltrans 94.1 0.16 3.5E-06 33.2 4.8 24 47-70 113-136 (340)
80 PRK00811 spermidine synthase; 94.1 0.061 1.3E-06 34.0 2.8 22 47-68 76-97 (283)
81 PRK12335 tellurite resistance 94.0 0.097 2.1E-06 32.9 3.6 31 36-68 111-141 (287)
82 COG2264 PrmA Ribosomal protein 94.0 0.049 1.1E-06 35.0 2.3 44 21-68 140-183 (300)
83 TIGR03704 PrmC_rel_meth putati 93.9 0.087 1.9E-06 32.7 3.3 23 48-70 87-109 (251)
84 COG4123 Predicted O-methyltran 93.9 0.087 1.9E-06 33.1 3.2 33 37-70 35-67 (248)
85 PRK05785 hypothetical protein; 93.8 0.073 1.6E-06 32.5 2.8 22 48-69 52-73 (226)
86 COG2230 Cfa Cyclopropane fatty 93.8 0.19 4.1E-06 32.2 4.6 34 34-69 61-94 (283)
87 PF01135 PCMT: Protein-L-isoas 93.8 0.12 2.7E-06 31.4 3.7 31 36-68 63-93 (209)
88 PRK00377 cbiT cobalt-precorrin 93.7 0.14 3E-06 30.4 3.8 25 45-69 38-62 (198)
89 PF08003 Methyltransf_9: Prote 93.7 0.14 3E-06 33.2 3.9 24 47-70 115-138 (315)
90 PRK14968 putative methyltransf 93.7 0.12 2.7E-06 29.8 3.4 23 46-68 22-44 (188)
91 PF01209 Ubie_methyltran: ubiE 93.6 0.1 2.2E-06 32.2 3.1 24 46-69 46-69 (233)
92 PF13659 Methyltransf_26: Meth 93.6 0.11 2.4E-06 27.9 2.9 21 49-69 2-22 (117)
93 PRK04266 fibrillarin; Provisio 93.4 0.14 2.9E-06 31.5 3.5 26 45-70 70-95 (226)
94 KOG1540 Ubiquinone biosynthesi 93.4 0.08 1.7E-06 33.7 2.4 37 34-70 85-123 (296)
95 PF06325 PrmA: Ribosomal prote 93.3 0.087 1.9E-06 33.7 2.6 44 21-68 139-182 (295)
96 PF03141 Methyltransf_29: Puta 93.3 0.096 2.1E-06 35.9 2.8 23 46-68 116-138 (506)
97 KOG3115 Methyltransferase-like 93.2 0.039 8.4E-07 34.1 0.8 24 48-71 61-84 (249)
98 PF08123 DOT1: Histone methyla 93.0 0.23 4.9E-06 30.2 3.9 33 35-69 32-64 (205)
99 PRK01581 speE spermidine synth 92.9 0.13 2.7E-06 34.1 2.9 23 46-68 149-171 (374)
100 PRK05134 bifunctional 3-demeth 92.9 0.31 6.7E-06 29.4 4.4 22 47-68 48-69 (233)
101 PLN02233 ubiquinone biosynthes 92.8 0.27 5.7E-06 30.7 4.2 24 46-69 72-95 (261)
102 PRK03612 spermidine synthase; 92.6 0.17 3.7E-06 34.6 3.3 23 47-70 297-319 (521)
103 PRK00517 prmA ribosomal protei 92.6 0.32 6.8E-06 30.0 4.2 24 46-69 118-141 (250)
104 PRK01544 bifunctional N5-gluta 92.5 0.18 4E-06 34.4 3.4 25 47-71 347-371 (506)
105 smart00138 MeTrc Methyltransfe 92.4 0.64 1.4E-05 29.1 5.5 61 8-70 46-126 (264)
106 TIGR02081 metW methionine bios 92.3 0.21 4.5E-06 29.5 3.1 22 47-68 13-34 (194)
107 PRK00312 pcm protein-L-isoaspa 92.3 0.47 1E-05 28.4 4.6 24 45-68 76-99 (212)
108 TIGR00478 tly hemolysin TlyA f 92.1 0.41 8.9E-06 29.6 4.3 34 34-68 63-96 (228)
109 KOG1271 Methyltransferases [Ge 92.1 0.3 6.6E-06 29.9 3.6 22 47-68 67-88 (227)
110 PRK13168 rumA 23S rRNA m(5)U19 92.0 0.15 3.3E-06 34.0 2.5 24 46-69 296-319 (443)
111 TIGR00417 speE spermidine synt 92.0 0.21 4.6E-06 31.2 3.0 23 47-69 72-94 (270)
112 PF03848 TehB: Tellurite resis 91.9 0.41 8.8E-06 28.9 4.0 32 35-68 20-51 (192)
113 PLN02585 magnesium protoporphy 91.8 0.18 3.9E-06 32.5 2.5 21 48-68 145-165 (315)
114 PF07021 MetW: Methionine bios 91.7 0.23 5.1E-06 30.1 2.9 23 46-68 12-34 (193)
115 PRK11873 arsM arsenite S-adeno 91.6 0.28 6.2E-06 30.4 3.2 25 45-69 75-99 (272)
116 PHA03412 putative methyltransf 91.5 0.19 4E-06 31.5 2.3 24 47-70 49-72 (241)
117 KOG0820 Ribosomal RNA adenine 91.2 0.55 1.2E-05 30.3 4.2 34 33-68 46-79 (315)
118 PF01728 FtsJ: FtsJ-like methy 91.0 0.46 1E-05 27.7 3.6 35 34-69 9-45 (181)
119 PRK14902 16S rRNA methyltransf 90.9 0.37 8E-06 32.2 3.4 31 37-69 242-272 (444)
120 PF05148 Methyltransf_8: Hypot 90.8 0.35 7.5E-06 29.9 3.0 62 6-68 28-93 (219)
121 PF02636 Methyltransf_28: Puta 90.6 0.31 6.7E-06 30.1 2.7 22 48-69 19-40 (252)
122 PRK10901 16S rRNA methyltransf 90.5 0.4 8.7E-06 31.9 3.3 26 45-70 242-267 (427)
123 KOG2651 rRNA adenine N-6-methy 90.4 0.49 1.1E-05 31.9 3.6 25 45-69 151-175 (476)
124 TIGR01983 UbiG ubiquinone bios 90.4 0.32 6.9E-06 29.0 2.6 23 47-69 45-67 (224)
125 PLN02396 hexaprenyldihydroxybe 90.1 0.31 6.8E-06 31.5 2.5 21 48-68 132-152 (322)
126 PF09243 Rsm22: Mitochondrial 90.0 0.74 1.6E-05 29.0 4.0 24 47-70 33-56 (274)
127 PRK14967 putative methyltransf 90.0 0.57 1.2E-05 28.3 3.4 23 46-68 35-57 (223)
128 COG0030 KsgA Dimethyladenosine 89.7 1 2.2E-05 28.5 4.5 35 34-70 19-53 (259)
129 PLN02672 methionine S-methyltr 89.7 0.4 8.7E-06 35.8 3.0 23 49-71 120-142 (1082)
130 PF12147 Methyltransf_20: Puta 89.6 0.46 1E-05 30.8 2.9 25 47-71 135-159 (311)
131 cd02190 epsilon_tubulin The tu 89.5 0.62 1.3E-05 30.8 3.5 35 35-70 90-129 (379)
132 TIGR00095 RNA methyltransferas 89.5 0.48 1E-05 28.2 2.8 24 47-70 49-72 (189)
133 COG2227 UbiG 2-polyprenyl-3-me 89.4 0.36 7.8E-06 30.3 2.3 22 47-68 59-80 (243)
134 PLN02781 Probable caffeoyl-CoA 89.3 2.5 5.5E-05 26.0 6.0 26 45-70 66-91 (234)
135 COG0248 GppA Exopolyphosphatas 88.8 0.42 9.2E-06 32.7 2.5 23 34-58 118-140 (492)
136 PF07757 AdoMet_MTase: Predict 88.8 0.98 2.1E-05 25.2 3.5 21 46-66 57-77 (112)
137 TIGR00479 rumA 23S rRNA (uraci 88.5 0.57 1.2E-05 31.1 2.9 24 45-68 290-313 (431)
138 PRK00050 16S rRNA m(4)C1402 me 88.5 1.2 2.6E-05 28.6 4.3 35 34-70 8-42 (296)
139 KOG1661 Protein-L-isoaspartate 88.4 0.95 2.1E-05 28.2 3.6 30 37-66 72-101 (237)
140 COG2518 Pcm Protein-L-isoaspar 88.3 1.3 2.8E-05 27.2 4.1 30 36-67 63-92 (209)
141 PHA03411 putative methyltransf 88.3 0.62 1.3E-05 29.8 2.8 23 48-70 65-87 (279)
142 KOG4589 Cell division protein 88.2 1.3 2.8E-05 27.3 4.0 63 6-69 26-91 (232)
143 PF05219 DREV: DREV methyltran 87.9 0.75 1.6E-05 29.2 3.0 24 47-70 94-117 (265)
144 PTZ00146 fibrillarin; Provisio 87.3 0.78 1.7E-05 29.5 2.9 25 45-69 130-154 (293)
145 PRK03522 rumB 23S rRNA methylu 87.3 1.2 2.7E-05 28.4 3.8 22 47-68 173-194 (315)
146 PF06792 UPF0261: Uncharacteri 87.3 2.4 5.2E-05 28.6 5.2 45 24-70 72-117 (403)
147 PF08704 GCD14: tRNA methyltra 87.2 1.6 3.4E-05 27.4 4.1 46 21-68 12-61 (247)
148 TIGR02085 meth_trns_rumB 23S r 87.1 0.7 1.5E-05 30.3 2.7 22 47-68 233-254 (374)
149 PRK10909 rsmD 16S rRNA m(2)G96 87.0 2 4.4E-05 25.9 4.4 22 47-68 53-74 (199)
150 KOG3010 Methyltransferase [Gen 87.0 0.61 1.3E-05 29.5 2.2 23 47-69 33-55 (261)
151 KOG2899 Predicted methyltransf 86.8 0.79 1.7E-05 29.2 2.6 36 34-69 45-80 (288)
152 KOG1499 Protein arginine N-met 86.7 0.8 1.7E-05 30.2 2.7 24 46-69 59-82 (346)
153 KOG2904 Predicted methyltransf 86.0 1.1 2.3E-05 29.1 2.9 26 46-71 147-172 (328)
154 cd02188 gamma_tubulin Gamma-tu 85.9 1.2 2.6E-05 30.0 3.3 34 36-70 122-160 (431)
155 TIGR00563 rsmB ribosomal RNA s 85.7 1 2.3E-05 30.0 2.9 26 45-70 236-261 (426)
156 COG1565 Uncharacterized conser 85.3 3.9 8.5E-05 27.3 5.3 21 48-68 78-98 (370)
157 cd00286 Tubulin_FtsZ Tubulin/F 85.0 1.8 3.9E-05 27.8 3.7 35 35-70 80-119 (328)
158 COG2263 Predicted RNA methylas 84.2 1.3 2.9E-05 27.0 2.6 24 46-69 44-67 (198)
159 cd06059 Tubulin The tubulin su 84.0 2.2 4.8E-05 28.1 3.8 26 34-60 79-104 (382)
160 COG0293 FtsJ 23S rRNA methylas 83.9 2.7 5.9E-05 25.8 4.0 45 23-68 22-66 (205)
161 COG3963 Phospholipid N-methylt 83.9 2.9 6.2E-05 25.3 3.9 37 30-68 33-69 (194)
162 TIGR03840 TMPT_Se_Te thiopurin 83.4 2.7 5.8E-05 25.6 3.8 22 47-68 34-55 (213)
163 PRK14901 16S rRNA methyltransf 83.4 1.6 3.4E-05 29.3 3.0 24 46-69 251-274 (434)
164 PRK02399 hypothetical protein; 83.3 5.1 0.00011 27.1 5.3 44 25-70 75-119 (406)
165 PTZ00387 epsilon tubulin; Prov 83.2 2 4.4E-05 29.3 3.5 35 35-70 122-161 (465)
166 PF02541 Ppx-GppA: Ppx/GppA ph 83.2 1.6 3.4E-05 27.4 2.8 13 46-58 111-123 (285)
167 KOG1500 Protein arginine N-met 82.8 4.7 0.0001 27.2 4.9 20 47-66 177-196 (517)
168 TIGR00446 nop2p NOL1/NOP2/sun 82.7 2.3 5E-05 26.5 3.4 24 46-69 70-93 (264)
169 TIGR01177 conserved hypothetic 82.7 3 6.6E-05 26.8 4.0 30 36-67 173-202 (329)
170 PF05401 NodS: Nodulation prot 82.0 2.1 4.5E-05 26.2 2.9 28 40-69 38-65 (201)
171 PRK11727 23S rRNA mA1618 methy 81.8 2.2 4.7E-05 27.8 3.1 24 47-70 114-137 (321)
172 COG5023 Tubulin [Cytoskeleton] 81.8 3 6.5E-05 28.1 3.7 37 34-71 120-161 (443)
173 PRK04148 hypothetical protein; 81.7 3.5 7.6E-05 23.6 3.6 30 36-67 7-37 (134)
174 COG2519 GCD14 tRNA(1-methylade 81.4 3.8 8.1E-05 26.0 4.0 41 26-68 71-115 (256)
175 PLN03075 nicotianamine synthas 81.4 3.8 8.1E-05 26.5 4.1 24 47-70 123-148 (296)
176 PRK11031 guanosine pentaphosph 81.3 1.5 3.2E-05 30.0 2.3 12 47-58 132-143 (496)
177 COG4976 Predicted methyltransf 81.3 4.7 0.0001 25.7 4.3 30 36-67 116-145 (287)
178 PLN02823 spermine synthase 80.6 2 4.3E-05 28.1 2.7 23 47-69 103-125 (336)
179 PRK14903 16S rRNA methyltransf 80.6 2.5 5.5E-05 28.4 3.2 25 45-69 235-259 (431)
180 PRK13255 thiopurine S-methyltr 80.3 4.4 9.6E-05 24.7 4.0 22 47-68 37-58 (218)
181 cd02189 delta_tubulin The tubu 79.6 3.3 7.2E-05 28.0 3.5 35 35-70 117-156 (446)
182 PRK14904 16S rRNA methyltransf 79.4 2.9 6.3E-05 28.1 3.2 23 47-69 250-272 (445)
183 COG1189 Predicted rRNA methyla 79.3 4.8 0.0001 25.4 3.9 33 35-68 68-100 (245)
184 KOG4058 Uncharacterized conser 79.2 2.5 5.5E-05 25.2 2.6 30 36-67 63-92 (199)
185 PLN00220 tubulin beta chain; P 79.1 3.5 7.5E-05 27.9 3.5 35 35-70 121-160 (447)
186 KOG1270 Methyltransferases [Co 79.0 1.2 2.6E-05 28.5 1.2 20 49-68 91-110 (282)
187 PRK10854 exopolyphosphatase; P 78.5 1.8 3.8E-05 29.7 2.0 12 47-58 137-148 (513)
188 PF01596 Methyltransf_3: O-met 78.4 3.8 8.2E-05 24.9 3.3 27 45-71 43-69 (205)
189 cd02187 beta_tubulin The tubul 78.1 3.2 6.9E-05 27.9 3.1 34 36-70 121-159 (425)
190 PF05891 Methyltransf_PK: AdoM 78.1 1.4 3E-05 27.3 1.3 21 47-67 55-75 (218)
191 PHA01634 hypothetical protein 78.0 2.1 4.7E-05 24.8 2.0 21 47-67 28-48 (156)
192 TIGR02148 Fibro_Slime fibro-sl 77.7 1 2.2E-05 24.1 0.6 18 43-60 31-48 (90)
193 COG4820 EutJ Ethanolamine util 77.2 1.6 3.4E-05 27.3 1.4 12 47-58 140-151 (277)
194 COG0357 GidB Predicted S-adeno 76.6 2.3 5.1E-05 26.2 2.0 23 48-70 68-90 (215)
195 PLN02476 O-methyltransferase 76.3 9.3 0.0002 24.5 4.7 26 45-70 116-141 (278)
196 KOG3420 Predicted RNA methylas 76.3 3 6.4E-05 24.8 2.3 27 36-64 39-65 (185)
197 PLN00221 tubulin alpha chain; 75.8 5.1 0.00011 27.2 3.6 36 34-70 122-162 (450)
198 COG0421 SpeE Spermidine syntha 75.5 4.4 9.5E-05 25.9 3.1 24 47-70 76-99 (282)
199 TIGR02143 trmA_only tRNA (urac 74.9 3.2 6.9E-05 27.1 2.4 21 49-69 199-219 (353)
200 PF02527 GidB: rRNA small subu 74.6 3 6.5E-05 25.0 2.1 22 50-71 51-72 (184)
201 PRK05031 tRNA (uracil-5-)-meth 74.4 3.9 8.4E-05 26.8 2.7 21 49-69 208-228 (362)
202 cd02186 alpha_tubulin The tubu 73.5 5.1 0.00011 27.0 3.2 35 35-70 122-161 (434)
203 PRK04338 N(2),N(2)-dimethylgua 73.3 3.1 6.7E-05 27.6 2.1 23 48-70 58-80 (382)
204 KOG2940 Predicted methyltransf 73.3 3.1 6.6E-05 26.6 1.9 23 46-68 71-93 (325)
205 PLN00222 tubulin gamma chain; 72.9 6.4 0.00014 26.8 3.5 34 36-70 124-162 (454)
206 PF05206 TRM13: Methyltransfer 72.6 11 0.00023 23.9 4.2 26 45-70 16-41 (259)
207 cd06060 misato Human Misato sh 72.3 5.5 0.00012 27.5 3.1 34 34-68 141-174 (493)
208 TIGR03706 exo_poly_only exopol 71.8 4.8 0.0001 25.6 2.6 10 49-58 127-136 (300)
209 PF10294 Methyltransf_16: Puta 70.7 5.9 0.00013 23.2 2.7 24 45-68 43-66 (173)
210 PTZ00335 tubulin alpha chain; 70.7 6.2 0.00013 26.8 3.1 35 35-70 123-162 (448)
211 COG4262 Predicted spermidine s 70.5 6.2 0.00014 26.9 3.0 24 47-71 289-312 (508)
212 KOG1709 Guanidinoacetate methy 70.5 12 0.00026 23.7 4.0 45 24-71 81-125 (271)
213 PRK11760 putative 23S rRNA C24 69.0 6.8 0.00015 26.1 2.9 23 46-68 210-232 (357)
214 PF03602 Cons_hypoth95: Conser 68.8 5.4 0.00012 23.7 2.3 22 47-68 42-63 (183)
215 KOG3456 NADH:ubiquinone oxidor 68.5 7.4 0.00016 21.6 2.5 45 16-61 46-90 (120)
216 PRK07535 methyltetrahydrofolat 66.6 15 0.00032 23.2 4.0 41 15-59 9-49 (261)
217 PTZ00010 tubulin beta chain; P 66.4 9.3 0.0002 25.9 3.2 35 35-70 121-160 (445)
218 COG1077 MreB Actin-like ATPase 65.7 4 8.6E-05 26.9 1.3 12 47-58 153-164 (342)
219 PF02784 Orn_Arg_deC_N: Pyrido 65.7 3.3 7.2E-05 25.4 1.0 12 49-60 197-208 (251)
220 KOG1501 Arginine N-methyltrans 65.6 6.6 0.00014 27.4 2.4 23 46-68 65-87 (636)
221 PRK00536 speE spermidine synth 65.6 7.8 0.00017 24.6 2.6 21 47-67 72-92 (262)
222 PF11312 DUF3115: Protein of u 65.2 8.6 0.00019 25.2 2.8 21 49-69 88-108 (315)
223 COG5459 Predicted rRNA methyla 64.8 2.9 6.2E-05 28.2 0.6 24 48-71 114-137 (484)
224 PRK15128 23S rRNA m(5)C1962 me 63.7 9.6 0.00021 25.5 2.9 21 47-67 220-240 (396)
225 cd00740 MeTr MeTr subgroup of 63.3 18 0.00039 22.7 3.9 39 19-60 13-51 (252)
226 PF12757 DUF3812: Protein of u 63.3 3.7 8E-05 23.2 0.8 13 46-58 55-67 (126)
227 KOG1541 Predicted protein carb 63.1 5.3 0.00012 25.3 1.5 18 47-64 50-67 (270)
228 PF00091 Tubulin: Tubulin/FtsZ 62.6 25 0.00055 21.2 4.4 26 35-61 115-140 (216)
229 PF14881 Tubulin_3: Tubulin do 62.2 14 0.00031 22.0 3.2 34 34-68 64-97 (180)
230 cd03331 Macro_Poa1p_like_SNF2 62.1 8.3 0.00018 22.4 2.1 23 49-71 23-47 (152)
231 KOG0822 Protein kinase inhibit 61.2 36 0.00078 24.4 5.2 54 8-68 334-388 (649)
232 PRK11783 rlmL 23S rRNA m(2)G24 61.1 10 0.00022 27.1 2.8 22 47-68 538-559 (702)
233 TIGR02987 met_A_Alw26 type II 60.9 8.1 0.00018 26.5 2.2 24 47-70 31-54 (524)
234 cd06829 PLPDE_III_CANSDC Type 60.0 4.8 0.0001 26.1 1.0 13 48-60 188-200 (346)
235 TIGR03439 methyl_EasF probable 59.7 26 0.00055 22.9 4.2 30 35-68 68-97 (319)
236 PF11144 DUF2920: Protein of u 59.4 29 0.00064 23.6 4.5 33 36-69 172-204 (403)
237 cd06836 PLPDE_III_ODC_DapDC_li 59.0 5.3 0.00012 26.2 1.1 13 48-60 207-219 (379)
238 COG3897 Predicted methyltransf 59.0 32 0.00069 21.4 4.3 24 45-68 77-100 (218)
239 KOG3191 Predicted N6-DNA-methy 58.8 13 0.00027 22.9 2.5 21 48-68 44-64 (209)
240 PF06723 MreB_Mbl: MreB/Mbl pr 58.5 11 0.00024 24.6 2.5 12 47-58 145-156 (326)
241 KOG3045 Predicted RNA methylas 58.3 32 0.0007 22.5 4.4 56 7-63 137-196 (325)
242 cd06841 PLPDE_III_MccE_like Ty 57.8 5.6 0.00012 26.0 1.0 13 48-60 203-215 (379)
243 PF05577 Peptidase_S28: Serine 55.9 33 0.00072 22.8 4.4 25 47-71 111-136 (434)
244 KOG1374 Gamma tubulin [Cytoske 55.6 16 0.00034 24.9 2.7 32 39-71 127-163 (448)
245 cd06830 PLPDE_III_ADC Type III 54.8 6.5 0.00014 26.1 1.0 13 48-60 224-236 (409)
246 cd06831 PLPDE_III_ODC_like_AZI 54.8 6.8 0.00015 26.0 1.0 11 49-59 204-214 (394)
247 COG4122 Predicted O-methyltran 54.8 21 0.00046 22.1 3.1 26 45-70 57-82 (219)
248 TIGR01047 nspC carboxynorsperm 54.6 7 0.00015 25.7 1.1 13 48-60 192-204 (380)
249 PRK15080 ethanolamine utilizat 54.5 8 0.00017 24.2 1.3 10 49-58 137-146 (267)
250 COG0443 DnaK Molecular chapero 53.8 7.5 0.00016 27.3 1.2 12 47-58 172-183 (579)
251 PF14514 TetR_C_9: Transcripti 52.8 32 0.0007 19.3 3.5 26 7-32 14-39 (129)
252 TIGR02261 benz_CoA_red_D benzo 52.7 11 0.00023 24.0 1.6 12 45-56 95-106 (262)
253 TIGR00824 EIIA-man PTS system, 52.6 34 0.00073 18.7 3.5 25 46-70 59-84 (116)
254 COG2521 Predicted archaeal met 52.3 18 0.0004 23.2 2.6 22 47-68 134-155 (287)
255 PF02879 PGM_PMM_II: Phosphogl 52.3 30 0.00064 18.2 3.2 25 45-69 19-44 (104)
256 cd00006 PTS_IIA_man PTS_IIA, P 51.8 32 0.00069 18.8 3.3 31 37-68 50-81 (122)
257 KOG3924 Putative protein methy 51.7 17 0.00037 24.7 2.5 31 36-66 180-211 (419)
258 cd06843 PLPDE_III_PvsE_like Ty 51.3 8.1 0.00018 25.2 1.0 13 48-60 204-216 (377)
259 cd06840 PLPDE_III_Bif_AspK_Dap 51.3 8.1 0.00018 25.3 1.0 12 49-60 206-217 (368)
260 PF01564 Spermine_synth: Sperm 51.1 14 0.00031 23.0 2.0 23 47-69 76-98 (246)
261 PF01170 UPF0020: Putative RNA 50.5 44 0.00096 19.6 3.9 33 34-68 17-49 (179)
262 KOG3987 Uncharacterized conser 50.3 9.6 0.00021 24.0 1.1 20 48-67 113-132 (288)
263 PF12953 DUF3842: Domain of un 49.6 15 0.00033 21.0 1.8 18 54-71 8-26 (131)
264 PF03514 GRAS: GRAS domain fam 49.5 32 0.00069 22.8 3.5 32 34-67 99-130 (374)
265 PLN02668 indole-3-acetate carb 49.3 74 0.0016 21.5 5.2 17 47-63 63-79 (386)
266 PLN02537 diaminopimelate decar 48.8 9.3 0.0002 25.3 1.0 12 49-60 222-233 (410)
267 PLN02439 arginine decarboxylas 48.8 9.7 0.00021 26.7 1.1 12 48-59 220-231 (559)
268 KOG2530 Members of tubulin/Fts 48.6 30 0.00066 24.0 3.3 33 35-68 195-227 (483)
269 PRK13928 rod shape-determining 48.5 11 0.00023 24.3 1.2 11 48-58 148-158 (336)
270 TIGR01273 speA arginine decarb 47.8 10 0.00022 27.0 1.1 12 49-60 277-288 (624)
271 PF12242 Eno-Rase_NADH_b: NAD( 46.9 35 0.00077 17.8 2.7 25 45-69 36-61 (78)
272 PRK11678 putative chaperone; P 46.5 12 0.00026 25.5 1.2 12 47-58 209-220 (450)
273 PF07520 SrfB: Virulence facto 46.3 9.4 0.0002 28.7 0.7 10 50-59 569-578 (1002)
274 cd06842 PLPDE_III_Y4yA_like Ty 46.1 11 0.00024 25.2 1.0 13 48-60 204-216 (423)
275 PRK14011 prefoldin subunit alp 46.1 15 0.00032 21.3 1.4 10 48-57 70-79 (144)
276 KOG2948 Predicted metal-bindin 45.9 16 0.00036 23.9 1.7 11 47-57 47-57 (327)
277 TIGR02529 EutJ ethanolamine ut 45.7 13 0.00029 22.9 1.3 11 48-58 109-119 (239)
278 PF05952 ComX: Bacillus compet 45.7 18 0.00039 17.8 1.5 36 7-42 4-42 (57)
279 PRK13927 rod shape-determining 45.7 13 0.00028 23.7 1.2 10 49-58 150-159 (334)
280 TIGR03192 benz_CoA_bzdQ benzoy 45.7 27 0.00058 22.7 2.6 10 47-56 125-134 (293)
281 PF02402 Lysis_col: Lysis prot 45.6 10 0.00023 17.7 0.6 11 48-58 21-31 (46)
282 PF14314 Methyltrans_Mon: Viru 45.6 74 0.0016 23.2 4.9 41 28-71 306-346 (675)
283 KOG2915 tRNA(1-methyladenosine 45.5 53 0.0012 21.5 3.9 47 21-69 77-127 (314)
284 PRK05354 arginine decarboxylas 45.2 12 0.00025 26.8 1.1 12 49-60 284-295 (634)
285 PF06277 EutA: Ethanolamine ut 45.1 11 0.00024 26.1 0.9 12 49-60 145-156 (473)
286 COG3133 SlyB Outer membrane li 45.1 15 0.00033 21.4 1.3 15 53-67 77-91 (154)
287 PF02384 N6_Mtase: N-6 DNA Met 45.0 46 0.001 21.0 3.7 24 45-68 44-67 (311)
288 TIGR02259 benz_CoA_red_A benzo 44.9 16 0.00035 25.0 1.6 12 45-56 265-276 (432)
289 KOG2931 Differentiation-relate 44.4 46 0.001 22.0 3.5 27 45-71 118-145 (326)
290 PRK01203 prefoldin subunit alp 44.3 16 0.00035 20.9 1.4 11 48-58 69-79 (130)
291 PRK13930 rod shape-determining 44.3 14 0.00029 23.6 1.2 11 48-58 153-163 (335)
292 PF00012 HSP70: Hsp70 protein; 44.2 13 0.00027 25.6 1.1 11 48-58 189-199 (602)
293 PF03610 EIIA-man: PTS system 44.1 20 0.00042 19.4 1.7 18 46-63 58-75 (116)
294 PF08557 Lipid_DES: Sphingolip 43.6 11 0.00025 17.0 0.5 6 65-70 22-27 (39)
295 PF09959 DUF2193: Uncharacteri 43.2 1E+02 0.0022 21.3 5.1 54 14-68 101-160 (499)
296 COG0849 ftsA Cell division ATP 43.1 15 0.00032 25.0 1.2 11 48-58 204-214 (418)
297 PRK05183 hscA chaperone protei 42.3 14 0.0003 26.1 1.1 11 48-58 202-212 (616)
298 PF03690 UPF0160: Uncharacteri 42.1 16 0.00035 23.9 1.3 11 46-56 42-52 (318)
299 TIGR00006 S-adenosyl-methyltra 42.1 83 0.0018 20.5 4.5 35 34-70 9-43 (305)
300 TIGR01991 HscA Fe-S protein as 41.7 15 0.00032 25.9 1.1 11 48-58 182-192 (599)
301 COG1660 Predicted P-loop-conta 41.3 80 0.0017 20.5 4.2 47 6-59 206-252 (286)
302 PLN02589 caffeoyl-CoA O-methyl 40.8 42 0.00092 21.0 3.0 26 45-70 77-102 (247)
303 COG2384 Predicted SAM-dependen 40.7 30 0.00065 21.7 2.2 24 48-71 17-40 (226)
304 TIGR02350 prok_dnaK chaperone 40.5 15 0.00033 25.5 1.1 12 47-58 183-194 (595)
305 PF05526 R_equi_Vir: Rhodococc 40.5 10 0.00023 22.7 0.2 15 46-60 161-175 (177)
306 KOG3048 Molecular chaperone Pr 40.0 16 0.00035 21.4 0.9 10 48-57 83-92 (153)
307 PRK00290 dnaK molecular chaper 39.9 16 0.00035 25.7 1.1 12 47-58 185-196 (627)
308 PF01234 NNMT_PNMT_TEMT: NNMT/ 39.8 33 0.00071 21.8 2.4 25 34-58 43-67 (256)
309 COG3048 DsdA D-serine dehydrat 39.7 19 0.00042 24.0 1.3 59 7-70 230-296 (443)
310 cd06839 PLPDE_III_Btrk_like Ty 39.7 16 0.00035 23.7 1.0 13 48-60 209-221 (382)
311 PF01795 Methyltransf_5: MraW 39.6 68 0.0015 21.0 3.8 36 34-71 9-44 (310)
312 KOG2183 Prolylcarboxypeptidase 38.9 27 0.00059 24.2 1.9 25 47-71 165-190 (492)
313 COG0742 N6-adenine-specific me 38.7 45 0.00097 20.2 2.7 23 47-69 43-65 (187)
314 TIGR01048 lysA diaminopimelate 38.1 18 0.00038 23.9 1.0 12 49-60 229-240 (417)
315 cd00622 PLPDE_III_ODC Type III 38.0 19 0.0004 23.3 1.1 14 48-61 192-205 (362)
316 COG3326 Predicted membrane pro 37.7 22 0.00048 19.2 1.2 16 54-69 48-63 (94)
317 PRK11165 diaminopimelate decar 37.7 18 0.0004 24.2 1.1 13 48-60 218-230 (420)
318 PRK09472 ftsA cell division pr 37.6 20 0.00044 23.9 1.2 12 47-58 204-215 (420)
319 PRK15197 secreted effector pro 37.4 28 0.00062 22.5 1.8 41 16-58 50-90 (291)
320 KOG1593 Asparaginase [Amino ac 37.4 47 0.001 21.7 2.7 35 34-69 293-327 (349)
321 PRK10719 eutA reactivating fac 37.2 21 0.00046 24.7 1.3 14 45-58 144-157 (475)
322 PF09949 DUF2183: Uncharacteri 37.1 71 0.0015 17.2 3.8 37 33-71 54-90 (100)
323 PRK13929 rod-share determining 37.0 21 0.00045 23.1 1.2 11 48-58 151-161 (335)
324 PTZ00186 heat shock 70 kDa pre 37.0 31 0.00067 24.7 2.1 12 47-58 212-223 (657)
325 cd06828 PLPDE_III_DapDC Type I 36.6 20 0.00043 23.2 1.1 13 48-60 206-218 (373)
326 COG4076 Predicted RNA methylas 36.3 35 0.00076 21.3 2.0 19 49-67 34-52 (252)
327 TIGR00904 mreB cell shape dete 36.3 21 0.00045 22.9 1.1 11 48-58 151-161 (333)
328 COG1924 Activator of 2-hydroxy 36.2 38 0.00082 23.0 2.3 11 46-56 228-238 (396)
329 COG4457 SrfB Uncharacterized p 36.2 17 0.00037 26.7 0.7 11 50-60 576-586 (1014)
330 PF02892 zf-BED: BED zinc fing 35.9 25 0.00053 15.6 1.1 21 50-70 24-45 (45)
331 PF08925 DUF1907: Domain of Un 35.9 23 0.00049 23.0 1.2 14 45-59 35-48 (284)
332 cd06810 PLPDE_III_ODC_DapDC_li 35.8 20 0.00044 23.1 1.0 14 48-61 201-214 (368)
333 PRK01433 hscA chaperone protei 35.8 21 0.00046 25.2 1.1 11 48-58 194-204 (595)
334 CHL00094 dnaK heat shock prote 35.7 21 0.00044 25.2 1.1 12 47-58 187-198 (621)
335 PF03291 Pox_MCEL: mRNA cappin 35.5 67 0.0015 21.1 3.3 22 47-68 62-83 (331)
336 PF09670 Cas_Cas02710: CRISPR- 35.4 68 0.0015 21.4 3.4 23 45-67 68-90 (379)
337 PF06961 DUF1294: Protein of u 35.4 15 0.00032 17.8 0.3 16 54-69 33-48 (55)
338 PRK13410 molecular chaperone D 35.4 33 0.00071 24.6 2.0 12 47-58 187-198 (668)
339 COG0563 Adk Adenylate kinase a 35.2 32 0.00069 20.4 1.7 16 55-70 10-25 (178)
340 KOG2336 Molybdopterin biosynth 35.2 63 0.0014 21.5 3.1 32 37-69 73-104 (422)
341 smart00614 ZnF_BED BED zinc fi 34.9 43 0.00092 15.4 1.8 16 56-71 34-49 (50)
342 TIGR00293 prefoldin, archaeal 33.4 30 0.00066 19.0 1.4 10 49-58 69-78 (126)
343 PF02475 Met_10: Met-10+ like- 33.4 38 0.00082 20.6 1.8 23 46-68 100-122 (200)
344 COG0019 LysA Diaminopimelate d 33.0 26 0.00056 23.5 1.2 13 48-60 229-241 (394)
345 PRK13411 molecular chaperone D 32.9 24 0.00053 25.1 1.1 11 48-58 187-197 (653)
346 PTZ00400 DnaK-type molecular c 32.5 24 0.00053 25.1 1.1 11 48-58 227-237 (663)
347 TIGR03099 dCO2ase_PEP1 pyridox 32.5 25 0.00053 23.1 1.0 11 49-59 226-236 (398)
348 KOG2182 Hydrolytic enzymes of 32.2 1.6E+02 0.0034 20.9 4.7 35 35-71 160-195 (514)
349 cd01068 sensor_globin Globin d 32.2 71 0.0015 17.7 2.8 18 6-23 36-53 (147)
350 PLN03184 chloroplast Hsp70; Pr 32.1 43 0.00093 24.0 2.2 12 47-58 224-235 (673)
351 PF03492 Methyltransf_7: SAM d 32.0 95 0.0021 20.3 3.6 23 45-67 14-36 (334)
352 PF07091 FmrO: Ribosomal RNA m 31.9 52 0.0011 20.9 2.3 40 24-63 77-121 (251)
353 KOG2361 Predicted methyltransf 31.8 53 0.0012 21.1 2.3 22 50-71 74-95 (264)
354 TIGR00197 yjeF_nterm yjeF N-te 31.8 1.2E+02 0.0026 18.3 4.0 41 25-68 26-70 (205)
355 KOG1385 Nucleoside phosphatase 31.3 25 0.00054 24.2 0.9 12 49-60 215-226 (453)
356 cd00423 Pterin_binding Pterin 31.2 37 0.00081 21.1 1.6 15 45-59 34-48 (258)
357 PRK11783 rlmL 23S rRNA m(2)G24 31.2 1.2E+02 0.0025 22.0 4.2 33 33-67 177-210 (702)
358 KOG1099 SAM-dependent methyltr 31.1 32 0.00069 22.1 1.3 32 36-68 31-62 (294)
359 PHA02518 ParA-like protein; Pr 31.0 63 0.0014 18.8 2.5 20 49-68 79-98 (211)
360 PF03912 Psb28: Psb28 protein; 30.9 35 0.00075 19.0 1.3 21 11-31 81-101 (108)
361 PF08841 DDR: Diol dehydratase 30.9 27 0.00059 22.9 1.0 12 47-58 134-145 (332)
362 KOG1663 O-methyltransferase [S 30.5 1.2E+02 0.0027 19.2 3.8 27 45-71 71-97 (237)
363 PRK06153 hypothetical protein; 30.5 64 0.0014 21.9 2.7 16 54-69 182-198 (393)
364 PLN02446 (5-phosphoribosyl)-5- 30.3 43 0.00094 21.4 1.8 28 36-65 47-76 (262)
365 COG4286 Uncharacterized conser 30.0 33 0.00071 22.4 1.2 14 45-58 45-58 (306)
366 PRK13610 photosystem II reacti 29.9 33 0.00072 19.2 1.1 21 11-31 88-108 (113)
367 PF14483 Cut8_M: Cut8 dimerisa 29.6 39 0.00084 15.0 1.1 10 61-70 18-27 (38)
368 PF13941 MutL: MutL protein 29.5 31 0.00066 23.8 1.1 12 47-58 248-259 (457)
369 TIGR00292 thiazole biosynthesi 29.4 1.4E+02 0.0031 18.6 4.0 20 46-66 20-39 (254)
370 PLN02256 arogenate dehydrogena 29.4 1.5E+02 0.0032 19.1 4.1 26 45-70 117-142 (304)
371 TIGR01174 ftsA cell division p 29.3 34 0.00074 22.3 1.3 12 47-58 196-207 (371)
372 PF02718 Herpes_UL31: Herpesvi 29.3 36 0.00077 21.8 1.3 23 6-28 28-50 (258)
373 KOG2187 tRNA uracil-5-methyltr 29.2 34 0.00074 24.1 1.3 24 45-68 381-404 (534)
374 PF05396 Phage_T7_Capsid: Phag 28.7 1.2E+02 0.0026 17.3 3.2 33 8-40 52-85 (123)
375 PLN00039 photosystem II reacti 28.5 36 0.00078 19.0 1.1 21 11-31 82-102 (111)
376 cd02042 ParA ParA and ParB of 28.3 86 0.0019 16.1 2.6 21 48-68 41-61 (104)
377 TIGR01319 glmL_fam conserved h 28.0 34 0.00073 23.7 1.1 11 48-58 250-260 (463)
378 PRK08961 bifunctional aspartat 27.9 32 0.00069 25.4 1.0 13 48-60 696-708 (861)
379 TIGR03047 PS_II_psb28 photosys 27.9 38 0.00082 18.9 1.1 21 11-31 81-101 (109)
380 PTZ00009 heat shock 70 kDa pro 27.8 33 0.00072 24.4 1.1 12 47-58 194-205 (653)
381 PRK09790 hypothetical protein; 27.6 29 0.00063 17.9 0.6 14 48-61 38-51 (91)
382 KOG0085 G protein subunit Galp 27.4 32 0.00069 22.2 0.8 12 49-60 201-212 (359)
383 PF03304 Mlp: Mlp lipoprotein 27.2 52 0.0011 19.4 1.6 25 7-31 64-88 (152)
384 CHL00128 psbW photosystem II p 27.1 40 0.00086 18.9 1.1 21 11-31 84-104 (113)
385 PF06917 Pectate_lyase_2: Peri 27.1 46 0.001 23.5 1.6 25 3-27 140-165 (557)
386 PF07519 Tannase: Tannase and 26.9 2E+02 0.0043 19.9 4.6 56 13-71 81-138 (474)
387 PHA03328 nuclear egress lamina 26.9 42 0.0009 22.1 1.3 22 7-28 64-85 (316)
388 PRK13612 photosystem II reacti 26.8 40 0.00086 18.9 1.1 21 11-31 84-104 (113)
389 cd03111 CpaE_like This protein 26.8 90 0.002 16.5 2.5 22 47-68 43-64 (106)
390 PF08984 DUF1858: Domain of un 26.5 65 0.0014 15.3 1.7 20 6-25 5-24 (59)
391 COG1891 Uncharacterized protei 26.3 39 0.00084 20.8 1.0 25 4-30 156-180 (235)
392 PF11017 DUF2855: Protein of u 26.0 60 0.0013 21.3 1.9 23 46-69 198-220 (314)
393 PRK13055 putative lipid kinase 25.9 1.3E+02 0.0028 19.4 3.5 27 36-65 50-76 (334)
394 cd06449 ACCD Aminocyclopropane 25.9 85 0.0018 19.9 2.6 22 46-67 50-71 (307)
395 PRK15047 N-hydroxyarylamine O- 25.7 40 0.00086 21.6 1.1 8 48-55 117-124 (281)
396 PF03230 Antirestrict: Antires 25.4 67 0.0014 17.3 1.8 16 8-23 76-91 (94)
397 PF06306 CgtA: Beta-1,4-N-acet 25.3 1.4E+02 0.003 20.1 3.4 34 35-71 107-140 (347)
398 cd00530 PTE Phosphotriesterase 25.1 1.8E+02 0.0039 18.1 4.1 26 45-70 43-72 (293)
399 PRK12462 phosphoserine aminotr 24.9 76 0.0016 21.2 2.3 54 5-67 34-87 (364)
400 TIGR00241 CoA_E_activ CoA-subs 24.7 62 0.0013 19.9 1.8 10 47-56 91-100 (248)
401 PF14003 YlbE: YlbE-like prote 24.6 92 0.002 15.7 2.1 22 8-29 14-35 (65)
402 COG1166 SpeA Arginine decarbox 24.5 34 0.00074 24.5 0.7 13 48-60 299-311 (652)
403 cd08283 FDH_like_1 Glutathione 24.4 1.2E+02 0.0026 19.7 3.1 25 46-70 183-208 (386)
404 PRK10742 putative methyltransf 24.3 1.4E+02 0.0031 19.0 3.3 33 34-68 75-109 (250)
405 COG0500 SmtA SAM-dependent met 24.2 1E+02 0.0022 15.6 2.4 12 51-62 52-63 (257)
406 PRK07502 cyclohexadienyl dehyd 24.1 2E+02 0.0043 18.2 4.1 25 46-70 91-115 (307)
407 PF02324 Glyco_hydro_70: Glyco 24.0 29 0.00064 25.5 0.3 18 54-71 708-732 (809)
408 PRK13917 plasmid segregation p 24.0 2.2E+02 0.0047 18.6 5.9 46 25-71 270-315 (344)
409 PF03612 EIIBC-GUT_N: Sorbitol 23.9 42 0.00092 20.4 0.9 8 49-56 65-72 (183)
410 PF00781 DAGK_cat: Diacylglyce 23.9 1.2E+02 0.0027 16.4 2.8 17 49-66 56-72 (130)
411 PRK03641 hypothetical protein; 23.9 61 0.0013 19.9 1.6 21 9-29 197-217 (220)
412 PRK00861 putative lipid kinase 23.8 1.4E+02 0.0031 18.8 3.3 20 46-66 56-75 (300)
413 PF00503 G-alpha: G-protein al 23.8 46 0.00099 21.9 1.1 11 49-59 238-248 (389)
414 PRK13141 hisH imidazole glycer 23.8 92 0.002 18.5 2.4 19 50-68 3-21 (205)
415 PF02153 PDH: Prephenate dehyd 23.8 1.8E+02 0.0039 18.0 3.7 36 35-70 59-94 (258)
416 TIGR03286 methan_mark_15 putat 23.7 54 0.0012 22.4 1.4 10 47-56 241-250 (404)
417 PRK03947 prefoldin subunit alp 23.5 57 0.0012 18.3 1.4 10 48-57 76-85 (140)
418 COG2502 AsnA Asparagine synthe 23.5 51 0.0011 21.4 1.2 13 48-60 285-297 (330)
419 PF14511 RE_EcoO109I: Type II 23.5 57 0.0012 20.1 1.4 23 5-27 171-193 (200)
420 PRK13611 photosystem II reacti 23.4 51 0.0011 18.2 1.1 21 11-31 77-97 (104)
421 COG4031 Predicted metal-bindin 23.4 72 0.0016 19.7 1.8 18 54-71 137-154 (227)
422 KOG1882 Transcriptional regula 23.2 31 0.00068 22.1 0.3 15 49-63 241-255 (293)
423 KOG4701 Chitinase [Cell wall/m 23.2 44 0.00095 23.0 0.9 24 38-63 96-119 (568)
424 COG3392 Adenine-specific DNA m 23.2 1.1E+02 0.0025 20.0 2.7 23 46-68 26-48 (330)
425 PRK11914 diacylglycerol kinase 23.1 1.5E+02 0.0033 18.7 3.3 19 46-65 63-81 (306)
426 PF04463 DUF523: Protein of un 22.8 90 0.0019 17.8 2.1 18 54-71 119-136 (143)
427 PF06406 StbA: StbA protein; 22.7 2.2E+02 0.0048 18.3 5.3 35 35-70 261-295 (318)
428 KOG1336 Monodehydroascorbate/f 22.6 1E+02 0.0022 21.6 2.5 22 48-69 74-96 (478)
429 PF12692 Methyltransf_17: S-ad 22.5 1.8E+02 0.004 17.3 5.7 50 18-71 3-52 (160)
430 PF09084 NMT1: NMT1/THI5 like; 22.3 68 0.0015 18.7 1.6 20 10-29 186-205 (216)
431 COG4819 EutA Ethanolamine util 22.3 42 0.00091 22.8 0.7 14 49-62 147-160 (473)
432 PRK11933 yebU rRNA (cytosine-C 22.2 1.6E+02 0.0035 20.4 3.4 24 46-69 112-135 (470)
433 COG1597 LCB5 Sphingosine kinas 22.1 1.7E+02 0.0037 18.8 3.4 29 34-65 47-75 (301)
434 PRK08163 salicylate hydroxylas 22.1 1.1E+02 0.0023 19.8 2.6 18 51-68 7-24 (396)
435 PF00549 Ligase_CoA: CoA-ligas 21.8 55 0.0012 19.1 1.1 14 46-59 34-47 (153)
436 PF09550 DUF2376: Conserved hy 21.8 76 0.0017 14.5 1.4 11 61-71 33-43 (43)
437 cd01421 IMPCH Inosine monophos 21.7 69 0.0015 19.5 1.5 19 50-70 118-136 (187)
438 PTZ00470 glycoside hydrolase f 21.7 85 0.0019 22.1 2.1 28 4-31 286-321 (522)
439 PF10887 DUF2686: Protein of u 21.5 93 0.002 19.8 2.0 23 49-71 193-215 (276)
440 PLN02918 pyridoxine (pyridoxam 21.3 1.4E+02 0.0029 21.3 3.0 41 25-67 114-159 (544)
441 PF09994 DUF2235: Uncharacteri 21.2 40 0.00086 21.3 0.4 8 52-59 250-257 (277)
442 COG4883 Uncharacterized protei 21.1 2.8E+02 0.006 18.8 4.9 59 9-68 96-161 (500)
443 PRK04334 hypothetical protein; 21.1 1.4E+02 0.0031 18.8 2.9 30 26-57 88-118 (251)
444 PF00809 Pterin_bind: Pterin b 21.1 53 0.0012 19.8 1.0 14 45-58 29-42 (210)
445 PRK01904 hypothetical protein; 20.8 75 0.0016 19.5 1.6 20 9-28 198-217 (219)
446 PF15538 Toxin_61: Putative to 20.8 2E+02 0.0044 17.1 3.3 42 14-58 23-64 (157)
447 PF12596 Tnp_P_element_C: 87kD 20.8 75 0.0016 17.6 1.4 13 59-71 84-96 (106)
448 TIGR03702 lip_kinase_YegS lipi 20.7 1.9E+02 0.0041 18.2 3.4 19 46-65 51-69 (293)
449 cd07922 CarBa CarBa is the A s 20.7 71 0.0015 16.7 1.3 20 7-26 8-27 (81)
450 cd06533 Glyco_transf_WecG_TagA 20.5 1.9E+02 0.0042 16.8 3.9 22 50-71 48-72 (171)
451 cd00584 Prefoldin_alpha Prefol 20.4 73 0.0016 17.5 1.4 10 48-57 69-78 (129)
452 PF15484 DUF4642: Domain of un 20.4 45 0.00097 19.6 0.5 17 38-56 124-140 (156)
453 PLN03049 pyridoxine (pyridoxam 20.4 1.5E+02 0.0032 20.5 3.0 41 25-67 38-83 (462)
454 cd06808 PLPDE_III Type III Pyr 20.3 62 0.0014 18.8 1.1 13 49-61 182-194 (211)
455 PF01150 GDA1_CD39: GDA1/CD39 20.2 55 0.0012 21.9 1.0 12 49-60 166-177 (434)
456 PF06966 DUF1295: Protein of u 20.1 1E+02 0.0022 19.0 2.0 21 47-67 9-29 (235)
457 PRK04517 hypothetical protein; 20.1 80 0.0017 19.4 1.6 19 9-27 196-214 (216)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.73 E-value=5.2e-18 Score=103.31 Aligned_cols=67 Identities=34% Similarity=0.646 Sum_probs=61.1
Q ss_pred cCCCChhhhhhcCcchHHHHHHHHHhcchhhH-HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 3 TFRKKFWDFVAAEPNLESIFYDAMIADSELIT-IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 3 ~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~-~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
++|.++|+|+.++|+..+.|+.+|+..+.... +.+++.+| |++..+|||||||.|+++.+++++||+
T Consensus 57 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~ 124 (241)
T PF00891_consen 57 AFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPN 124 (241)
T ss_dssp HHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTT
T ss_pred hcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCC
Confidence 46788999999999999999999999988887 88899999 899999999999999999999999996
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.35 E-value=2.2e-12 Score=82.39 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=65.0
Q ss_pred ccCCCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 2 TTFRKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 2 ~~~g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+||+.+|+|...++.....|+++|...+....+.++..|.. |++..++||||||.|..+..++..||+
T Consensus 133 ~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ 201 (342)
T KOG3178|consen 133 TAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPH 201 (342)
T ss_pred cccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCC
Confidence 578989999999999999999999999999999999999985 999999999999999999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.71 E-value=5.2e-08 Score=61.34 Aligned_cols=50 Identities=24% Similarity=0.660 Sum_probs=39.1
Q ss_pred HHHHHHHH-hcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 20 SIFYDAMI-ADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 20 ~~F~~~M~-~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..|...|. .......+.+++..+ +++..+|+|||||+|.++..+++++|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~ 173 (306)
T TIGR02716 123 NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPE 173 (306)
T ss_pred HHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCC
Confidence 34555555 333444566788888 888899999999999999999999995
No 4
>PRK06922 hypothetical protein; Provisional
Probab=98.22 E-value=4.3e-06 Score=57.84 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=49.7
Q ss_pred CChhhhhhcCcchHHHHHHHHHhcchhh--HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 6 KKFWDFVAAEPNLESIFYDAMIADSELI--TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 6 ~~~f~~~~~~p~~~~~F~~~M~~~~~~~--~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+.+|+++..+++..++|...|....... .......++ +....+|+|||+|+|.++..+++++|+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~ 442 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETED 442 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCC
Confidence 4689999999999999998887654432 222344566 567789999999999999999988874
No 5
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.42 E-value=0.00028 Score=41.57 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=33.4
Q ss_pred HHHHH-HHhcchhhHHHH-HHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 21 IFYDA-MIADSELITIVV-IEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 21 ~F~~~-M~~~~~~~~~~~-~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.|.++ |...+......+ +...+ .....+|+|||.|+|.++..+++++|+
T Consensus 5 ~f~~~~~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~ 55 (187)
T PRK08287 5 LFLRGEKVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPS 55 (187)
T ss_pred hhccCCCCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCC
Confidence 44454 444444443333 34445 556779999999999999999998874
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.30 E-value=0.00069 Score=41.73 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=29.2
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+++.++ .....+|+|||.|+|.++..+++++|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~ 53 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPG 53 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCC
Confidence 45677776 566789999999999999999998773
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.10 E-value=0.00076 Score=36.14 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.0
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+|+|||.|+|.++..+++++|.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~ 25 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG 25 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC
Confidence 368999999999999999997763
No 8
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.09 E-value=0.002 Score=34.86 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.3
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
++..++ .....+++|+|.|.|.++..+++++|+
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~ 43 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPN 43 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence 445555 445579999999999999999998873
No 9
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.03 E-value=0.0022 Score=39.34 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=29.8
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+++..+ .....+|+|||.|+|.++..+++++|.
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~ 55 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPA 55 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCC
Confidence 456777776 667789999999999999999998763
No 10
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.95 E-value=0.005 Score=37.05 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=41.3
Q ss_pred ChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 7 KFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..|+.+...++....+...|..........+++..+.......+++|||.|+|.++..+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~ 76 (219)
T TIGR02021 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR 76 (219)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC
Confidence 45676777777778888877543333333444433310234689999999999999998865
No 11
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.56 E-value=0.0053 Score=35.79 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+++..+ .....+++|+|-|+|.++..+++++|+
T Consensus 22 lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~ 55 (170)
T PF05175_consen 22 LLLDNLP--KHKGGRVLDLGCGSGVISLALAKRGPD 55 (170)
T ss_dssp HHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTSTC
T ss_pred HHHHHHh--hccCCeEEEecCChHHHHHHHHHhCCC
Confidence 4555555 336789999999999999999999885
No 12
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.53 E-value=0.0038 Score=37.13 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.8
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+++|||-|.|.++..+++++|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~ 40 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPD 40 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCC
Confidence 4579999999999999999999985
No 13
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.50 E-value=0.0056 Score=40.29 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.-+++..+ .....+|+|+|.|+|.++..+++++|+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~ 252 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQ 252 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCC
Confidence 34566666 333469999999999999999999985
No 14
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.48 E-value=0.008 Score=37.12 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++..+ .....+|+|||.|.|.++..++++.+
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~ 52 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK 52 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC
Confidence 445666666 66778999999999999999998875
No 15
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.46 E-value=0.0054 Score=34.79 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.7
Q ss_pred hCCCceeEeecCCccHHHHHHHH
Q 047240 45 FKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
-.+..+|||+|+|.|+++..+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 36678999999999999999988
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.45 E-value=0.0059 Score=37.91 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+..++...+ ......|||+|-|+|+...-|++++|+
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~ 54 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPD 54 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCC
Confidence 467888888 788999999999999999999999995
No 17
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.44 E-value=0.0067 Score=35.97 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=25.3
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
+++..+ .....+|+|||.|+|.++..+++..|
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~ 63 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCP 63 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence 455555 45667999999999999999987765
No 18
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.40 E-value=0.007 Score=40.06 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+++.+. -.....+||||-|+|.++..+++++|+
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~ 146 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPN 146 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCC
Confidence 444444 344579999999999999999999985
No 19
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.39 E-value=0.0098 Score=37.23 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++..+ .....+|+|||.|+|.++..++++.+
T Consensus 31 ~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~ 65 (272)
T PRK00274 31 LDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA 65 (272)
T ss_pred HHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC
Confidence 345666666 55667999999999999999998765
No 20
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.34 E-value=0.0079 Score=34.93 Aligned_cols=32 Identities=9% Similarity=0.370 Sum_probs=26.2
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..+++..+ .....+++|||.|.|.++..++++
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc
Confidence 35666666 566779999999999999999876
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.28 E-value=0.0087 Score=38.43 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=21.1
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|||.|+|.++..+++..|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~ 145 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA 145 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC
Confidence 457999999999999999988765
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.22 E-value=0.014 Score=35.94 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+|+|||+|+|.++..+++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g 66 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG 66 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC
Confidence 45799999999999999998753
No 23
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.21 E-value=0.023 Score=34.06 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|||.|+|.++..++++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~ 85 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG 85 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC
Confidence 345799999999999999888754
No 24
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.17 E-value=0.01 Score=35.60 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.8
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
....+||||-|.|.++.++++++|+
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd 41 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPD 41 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTT
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCC
Confidence 3459999999999999999999996
No 25
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.012 Score=37.73 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=30.0
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+-+++.++ ......|+|+|-|.|-+.+.+++.+|+
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~ 182 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQ 182 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCC
Confidence 356778888 444559999999999999999999994
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.08 E-value=0.011 Score=35.27 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=26.5
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+.+++.++ .....+|+|||.|+|..+..++++
T Consensus 19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~ 51 (197)
T PRK11207 19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN 51 (197)
T ss_pred hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC
Confidence 356677776 555689999999999999998875
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.99 E-value=0.037 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcc------hhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 18 LESIFYDAMIADS------ELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 18 ~~~~F~~~M~~~~------~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..+.|.++-..+. ...+..+++..+ .....+|+|||.|+|.++..+.+.
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~ 63 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER 63 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc
Confidence 3456666655432 223445566665 345679999999999998887653
No 28
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.97 E-value=0.024 Score=34.17 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.+++..+ .....+|+|||.|+|.++..+++..+
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~ 100 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVG 100 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhC
Confidence 4455555 55678999999999999998887653
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.95 E-value=0.03 Score=33.47 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.3
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+|+|||.|+|..+..+++++|.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~ 69 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPE 69 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCC
Confidence 578999999999999999987763
No 30
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.93 E-value=0.016 Score=34.77 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=25.2
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+.+.|. ....+|+|||-|+|..+..+++.+|+
T Consensus 33 ~~~~~~---~~~~~VLDiGcGtG~~~~~la~~~p~ 64 (202)
T PRK00121 33 WAELFG---NDAPIHLEIGFGKGEFLVEMAKANPD 64 (202)
T ss_pred HHHHcC---CCCCeEEEEccCCCHHHHHHHHHCCC
Confidence 444444 24679999999999999999988774
No 31
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.92 E-value=0.018 Score=34.09 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=26.0
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.++.... .....+|+|||.|.|..+..+++++|
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~ 62 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAP 62 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcC
Confidence 3444444 34668999999999999999999887
No 32
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.92 E-value=0.018 Score=37.36 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+++.++ .....+|+|+|.|.|.++..+++++|+
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~ 220 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPK 220 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCC
Confidence 34455555 233458999999999999999999883
No 33
>PRK08317 hypothetical protein; Provisional
Probab=95.90 E-value=0.021 Score=34.04 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+++..+ .....+|+|||.|+|.++..+++.+
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~ 41 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRV 41 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 3455555 5667899999999999999999876
No 34
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.89 E-value=0.021 Score=35.50 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+++..+ .....+|+|||.|.|.++..++++.
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~ 51 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA 51 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC
Confidence 445666665 5567899999999999999998864
No 35
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.76 E-value=0.023 Score=34.24 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.++...+ .....+|+|||.|+|..+..+++..
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~ 67 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAV 67 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHh
Confidence 3455555 4556799999999999999998875
No 36
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.73 E-value=0.012 Score=36.61 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|||+|+|.++..+++..+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g 74 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG 74 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC
Confidence 457999999999999999999875
No 37
>PRK04457 spermidine synthase; Provisional
Probab=95.71 E-value=0.015 Score=36.33 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+|+|||+|.|.++..+++.+|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~ 90 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD 90 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC
Confidence 4568999999999999999998874
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.70 E-value=0.014 Score=34.84 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.7
Q ss_pred CceeEeecCCccHHHHHHHHhcC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+|+|||.|+|.++..+++..|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~ 57 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP 57 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC
Confidence 46899999999999999998876
No 39
>PRK06202 hypothetical protein; Provisional
Probab=95.70 E-value=0.031 Score=33.92 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.0
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+..+|+|||.|+|.++..|++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~ 81 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARW 81 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHH
Confidence 35579999999999998888753
No 40
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.64 E-value=0.045 Score=36.87 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=32.9
Q ss_pred hhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhh--hCCCceeEeecCCccHHHHHHHHh
Q 047240 8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEV--FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 8 ~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~--~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.||-+++||..-+.+.+|+.. .+.+..... -....+|+|||.|+|-++...+++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A 207 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQA 207 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHT
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHH
Confidence 467777888877777777632 222222200 113579999999999998776654
No 41
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.63 E-value=0.03 Score=33.51 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
++...+ .....+|+|||.|+|.++..+++.+|
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~ 74 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVG 74 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 444444 33457999999999999999998876
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.62 E-value=0.019 Score=32.64 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.1
Q ss_pred CCceeEeecCCccHHHHHHHH-hcC
Q 047240 47 GLKSLVDVGGGTGTMARAIAT-GFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~-~~P 70 (71)
...+|+|+|.|+|.++..+++ .+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~ 27 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNP 27 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCC
Confidence 457899999999999999994 444
No 43
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.60 E-value=0.012 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.7
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|||.|+|.++..+++.+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~ 65 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP 65 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC
Confidence 357999999999999998887776
No 44
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.53 E-value=0.029 Score=35.62 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.5
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|||+|.|+|.....|+++.|
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~ 86 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALR 86 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhc
Confidence 346899999999999999988764
No 45
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.39 E-value=0.034 Score=34.31 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=22.4
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+.+|+||=|.|.++.++++++|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~ 72 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPE 72 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCC
Confidence 369999999999999999999996
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.36 E-value=0.027 Score=35.53 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=24.5
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..+++..+ .....+|+|||.|-|.++..++++|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~ 84 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY 84 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc
Confidence 45566666 6778899999999999999999986
No 47
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.34 E-value=0.048 Score=33.09 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.2
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+|+|+|.|+|.++..+++.+|+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~ 111 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD 111 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC
Confidence 458999999999999999998763
No 48
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.32 E-value=0.019 Score=36.69 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.0
Q ss_pred ceeEeecCCccHHHHHHHHhcCC
Q 047240 49 KSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+|+|+|.|+|.++..+++.+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~ 157 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD 157 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC
Confidence 58999999999999999998873
No 49
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.28 E-value=0.034 Score=33.13 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..+++.++ .....+|+|||.|+|..+..++++
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~ 51 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA 51 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC
Confidence 45566665 445679999999999999988864
No 50
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.28 E-value=0.058 Score=32.57 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=24.7
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.++...+ .....+|+|||.|+|.++..+++..
T Consensus 67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~ 98 (212)
T PRK13942 67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIV 98 (212)
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhc
Confidence 4455555 5667899999999999998877653
No 51
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.27 E-value=0.051 Score=35.01 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCCceeEeecCCccHHHHHHHHhcC
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
....+|+|||.|+|.++..++...+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~ 144 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA 144 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC
Confidence 3457999999999999988887665
No 52
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.26 E-value=0.028 Score=34.24 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.6
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|||.|+|..+..+++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~ 75 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNI 75 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhc
Confidence 355789999999999999998864
No 53
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.042 Score=34.76 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.7
Q ss_pred eeEeecCCccHHHHHHHHhcCC
Q 047240 50 SLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 50 ~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+++|+|-|+|..+.+++++.|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~ 134 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD 134 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC
Confidence 7999999999999999999884
No 54
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.12 E-value=0.06 Score=31.69 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+.+.+. ......+|+|+|.|+|.++..+++++
T Consensus 23 ~~~~~~-~i~~g~~VLDiG~GtG~~~~~l~~~~ 54 (188)
T TIGR00438 23 LNQKFK-LIKPGDTVLDLGAAPGGWSQVAVEQV 54 (188)
T ss_pred HHHHhc-ccCCCCEEEEecCCCCHHHHHHHHHh
Confidence 344444 13556899999999999999988775
No 55
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.12 E-value=0.031 Score=35.31 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+|+|+|.|+|.++..+++++|+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~ 145 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE 145 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC
Confidence 468999999999999999998773
No 56
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.06 E-value=0.052 Score=33.84 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=26.9
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+++..+ .....+|+|||.|+|..+..+++++
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~ 74 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY 74 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc
Confidence 455666666 6677899999999999988887654
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.06 E-value=0.075 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.5
Q ss_pred hCCCceeEeecCCccHHHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.....+|+|||.|+|..+..+++..
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~ 94 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAI 94 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhc
Confidence 3455799999999999998888764
No 58
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.88 E-value=0.061 Score=32.41 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.4
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.....+++|||-|+|.+..+.+..+|.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~ 58 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPS 58 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCC
Confidence 456679999999999999999987774
No 59
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.86 E-value=0.062 Score=32.49 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=24.4
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+.+.|. .+....+|+|||.|+|.++..++++.
T Consensus 41 ~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~ 73 (209)
T PRK11188 41 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQI 73 (209)
T ss_pred HHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHc
Confidence 3444444 13456799999999999999888875
No 60
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=94.84 E-value=0.087 Score=29.51 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=19.9
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+|+|||.|.|.++..+.+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~ 43 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR 43 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh
Confidence 46789999999999999988654
No 61
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=94.78 E-value=0.04 Score=33.89 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+|+|||.|+|..+..+++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~ 77 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRN 77 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHh
Confidence 35578999999999999988873
No 62
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.77 E-value=0.087 Score=32.50 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|+|.|+|..+..+++..|
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~ 131 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP 131 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC
Confidence 456899999999999999998876
No 63
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.76 E-value=0.064 Score=36.01 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+++|||.|+|.++..+++++|+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~ 275 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPD 275 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCC
Confidence 3458999999999999999988763
No 64
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.64 E-value=0.073 Score=35.57 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=26.5
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+.+++..+ .....+|+|||.|+|.++..+++.+
T Consensus 26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~ 59 (475)
T PLN02336 26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA 59 (475)
T ss_pred hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC
Confidence 455666665 4456799999999999999998764
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.62 E-value=0.06 Score=31.40 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCCceeEeecCCccHHHHHHHHhcC
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
....+++|+|.|+|.++..+++..|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~ 42 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK 42 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC
Confidence 3446899999999999999988754
No 66
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.62 E-value=0.099 Score=33.36 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=26.6
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+++..+ .....+|+|||-|.|.+...++++.
T Consensus 25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~ 58 (294)
T PTZ00338 25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA 58 (294)
T ss_pred HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC
Confidence 345666655 5566899999999999999998764
No 67
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.50 E-value=0.044 Score=34.46 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.4
Q ss_pred ceeEeecCCccHHHHHHHHhcC
Q 047240 49 KSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.+|+|+|.|+|.++..+++.+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~ 137 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP 137 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC
Confidence 5899999999999999999877
No 68
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.49 E-value=0.049 Score=33.89 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=29.2
Q ss_pred hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+++..+ ......|+|||.|.|.+...|++..
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc
Confidence 4567777777 6688999999999999999998764
No 69
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.48 E-value=0.059 Score=32.48 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCCceeEeecCCccHHHHHHHHhcC
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
....+|+|||-|+|..+..+++..|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~ 66 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLP 66 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCC
Confidence 3557899999999999999988755
No 70
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=94.46 E-value=0.058 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.8
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|||-|+|.++..+++..|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~ 108 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALP 108 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcc
Confidence 446899999999999999988765
No 71
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.43 E-value=0.097 Score=31.96 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCCc-eeEeecCCccHHHHHHHHhcCC
Q 047240 46 KGLK-SLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 46 ~~~~-~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.... +|+.||-|+|+-+..+++++|+
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~ 49 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPH 49 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCC
Confidence 3444 5999999999999999999995
No 72
>PLN02366 spermidine synthase
Probab=94.34 E-value=0.056 Score=34.71 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=19.8
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+..+|++||||.|..+.++++.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~ 112 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH 112 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC
Confidence 35689999999999999999864
No 73
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.32 E-value=0.047 Score=37.16 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceeEeecCCccHHHHHHHHhcCC
Q 047240 49 KSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+|+|||.|+|.++..+++++|+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~ 162 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPN 162 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCC
Confidence 58999999999999999988774
No 74
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.31 E-value=0.14 Score=33.15 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.8
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.....+|+|||.|+|.++..+++..+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~ 103 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVG 103 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcC
Confidence 44567999999999999999988654
No 75
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.26 E-value=0.15 Score=33.61 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=24.1
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+++..+ .....+|+|||.|.|.++..+++++
T Consensus 159 l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~ 189 (383)
T PRK11705 159 ICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY 189 (383)
T ss_pred HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC
Confidence 444444 4566799999999999999988765
No 76
>PLN02244 tocopherol O-methyltransferase
Probab=94.26 E-value=0.1 Score=33.69 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=20.7
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|||.|+|.++..+++++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~ 140 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY 140 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc
Confidence 345789999999999999998875
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.23 E-value=0.048 Score=34.42 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 22 FYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 22 F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
|..+....+.... .++..+. . ...+|+|||.|+|.++..+++.
T Consensus 138 FgtG~h~tt~l~l-~~l~~~~--~-~g~~VLDvGcGsG~lai~aa~~ 180 (288)
T TIGR00406 138 FGTGTHPTTSLCL-EWLEDLD--L-KDKNVIDVGCGSGILSIAALKL 180 (288)
T ss_pred ccCCCCHHHHHHH-HHHHhhc--C-CCCEEEEeCCChhHHHHHHHHc
Confidence 4444333333332 2344444 2 4489999999999999887764
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.12 E-value=0.11 Score=34.75 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=25.2
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..+++..+ .....+|+|||.|+|..+..+++.+
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~ 288 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF 288 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc
Confidence 44556555 4566799999999999988887754
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.09 E-value=0.16 Score=33.15 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|||.|+|.++..+++++|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~ 136 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD 136 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC
Confidence 456999999999999999988765
No 80
>PRK00811 spermidine synthase; Provisional
Probab=94.05 E-value=0.061 Score=33.97 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.4
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
+..+|+|||||.|..+..+++.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC
Confidence 4578999999999999999874
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.98 E-value=0.097 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=22.8
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.++...+ .....+|+|||.|+|..+..++++
T Consensus 111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~ 141 (287)
T PRK12335 111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL 141 (287)
T ss_pred HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC
Confidence 3444444 334469999999999999988764
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.97 E-value=0.049 Score=35.02 Aligned_cols=44 Identities=30% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 21 IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 21 ~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.|..+-+..+.+.. .+++.+. .+..+++|||-|+|.++++.++-
T Consensus 140 AFGTG~HpTT~lcL-~~Le~~~---~~g~~vlDvGcGSGILaIAa~kL 183 (300)
T COG2264 140 AFGTGTHPTTSLCL-EALEKLL---KKGKTVLDVGCGSGILAIAAAKL 183 (300)
T ss_pred ccCCCCChhHHHHH-HHHHHhh---cCCCEEEEecCChhHHHHHHHHc
Confidence 44444444444443 4666666 47799999999999999998764
No 83
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.92 E-value=0.087 Score=32.71 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred CceeEeecCCccHHHHHHHHhcC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+++|+|.|+|.++..++++.|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~ 109 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD 109 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC
Confidence 35899999999999999998776
No 84
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.91 E-value=0.087 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=26.1
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
++..|.. .....+|+|+|-|.|.++..+++++|
T Consensus 35 LL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~ 67 (248)
T COG4123 35 LLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTE 67 (248)
T ss_pred HHHhhcc-cccCCeEEEecCCcCHHHHHHhccCC
Confidence 4444432 44589999999999999999999876
No 85
>PRK05785 hypothetical protein; Provisional
Probab=93.85 E-value=0.073 Score=32.52 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.5
Q ss_pred CceeEeecCCccHHHHHHHHhc
Q 047240 48 LKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..+|+|||.|+|.++..+++++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~ 73 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF 73 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc
Confidence 5799999999999999988764
No 86
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.82 E-value=0.19 Score=32.16 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=29.6
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+.+++... +.+..+|+|||-|-|.++...+++|
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc
Confidence 456777777 8889999999999999999999887
No 87
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.76 E-value=0.12 Score=31.39 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+++..+ .....+|+|||.|+|.+++-+++-
T Consensus 63 ~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~l 93 (209)
T PF01135_consen 63 RMLEALD--LKPGDRVLEIGTGSGYQAALLAHL 93 (209)
T ss_dssp HHHHHTT--C-TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHh--cCCCCEEEEecCCCcHHHHHHHHh
Confidence 4555555 567789999999999998887753
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.74 E-value=0.14 Score=30.45 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.2
Q ss_pred hCCCceeEeecCCccHHHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.....+|+|+|.|+|.++..+++..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~ 62 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLV 62 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHh
Confidence 5567899999999999999987753
No 89
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=93.69 E-value=0.14 Score=33.23 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.2
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..++|+|||.|.|.++-.++++-|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA 138 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA 138 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC
Confidence 457999999999999999988765
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=93.66 E-value=0.12 Score=29.85 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.7
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+++|+|.|+|.++..++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh
Confidence 45578999999999999998875
No 91
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.63 E-value=0.1 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=17.9
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|||.|+|.++..++++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~ 69 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV 69 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC
Confidence 445699999999999999998764
No 92
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.56 E-value=0.11 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.6
Q ss_pred ceeEeecCCccHHHHHHHHhc
Q 047240 49 KSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+|+|+|.|+|.++..+++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~ 22 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG 22 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC
Confidence 479999999999999998764
No 93
>PRK04266 fibrillarin; Provisional
Probab=93.44 E-value=0.14 Score=31.52 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.3
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.....+|+|+|-|+|.++..+++..|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~ 95 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE 95 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC
Confidence 55668999999999999999988764
No 94
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=93.42 E-value=0.08 Score=33.74 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHHHHhchhhhC--CCceeEeecCCccHHHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFK--GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~--~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.+-|-+.+.+.+. ..-.++||+||+|..+-.|++.-+
T Consensus 85 HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~ 123 (296)
T KOG1540|consen 85 HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVK 123 (296)
T ss_pred hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhc
Confidence 3345555553221 246999999999999999988643
No 95
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=93.32 E-value=0.087 Score=33.74 Aligned_cols=44 Identities=30% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 21 IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 21 ~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.|..+-+..+++.. .+++.+. ....+|+|||-|+|.++++.++.
T Consensus 139 AFGTG~H~TT~lcl-~~l~~~~---~~g~~vLDvG~GSGILaiaA~kl 182 (295)
T PF06325_consen 139 AFGTGHHPTTRLCL-ELLEKYV---KPGKRVLDVGCGSGILAIAAAKL 182 (295)
T ss_dssp SS-SSHCHHHHHHH-HHHHHHS---STTSEEEEES-TTSHHHHHHHHT
T ss_pred cccCCCCHHHHHHH-HHHHHhc---cCCCEEEEeCCcHHHHHHHHHHc
Confidence 44444445555554 3455554 34479999999999999987764
No 96
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.29 E-value=0.096 Score=35.86 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.6
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+++|||+|.|.+++.++++
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC
Confidence 45789999999999999999876
No 97
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.21 E-value=0.039 Score=34.12 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.1
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
-..++|||-|.|-+++.|..+||+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPd 84 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPD 84 (249)
T ss_pred cceEEeeccCccchhhhccccCcc
Confidence 368999999999999999999996
No 98
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.99 E-value=0.23 Score=30.22 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=21.5
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..+++... .....+++|+|-|.|....+.+-.+
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~ 64 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT 64 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc
Confidence 34556655 5667899999999999887766543
No 99
>PRK01581 speE spermidine synthase; Validated
Probab=92.92 E-value=0.13 Score=34.12 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.4
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+..+|++||||.|..+.++++.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~ 171 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY 171 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc
Confidence 34579999999999999988874
No 100
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=92.89 E-value=0.31 Score=29.41 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.4
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|||.|+|.++..+++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~ 69 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL 69 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc
Confidence 4578999999999998887764
No 101
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.81 E-value=0.27 Score=30.66 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.3
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|||-|+|.++..+++++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~ 95 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKV 95 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHh
Confidence 345799999999999998888764
No 102
>PRK03612 spermidine synthase; Provisional
Probab=92.58 E-value=0.17 Score=34.63 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.8
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
+.++|+|||||.|..+.++++ +|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~ 319 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YP 319 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CC
Confidence 457899999999999999986 44
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.55 E-value=0.32 Score=30.05 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=19.5
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|||-|+|.++..+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g 141 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG 141 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC
Confidence 356799999999999988876643
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.53 E-value=0.18 Score=34.37 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=23.4
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
....+||||-|.|.++.++++++|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~ 371 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD 371 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC
Confidence 4689999999999999999999996
No 105
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.38 E-value=0.64 Score=29.09 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=33.4
Q ss_pred hhhhhhcCc--chHHHHHHHHHhc-chh-------------hHHHHHHhchhhhCCCceeEeecCCccH----HHHHHHH
Q 047240 8 FWDFVAAEP--NLESIFYDAMIAD-SEL-------------ITIVVIEDCKEVFKGLKSLVDVGGGTGT----MARAIAT 67 (71)
Q Consensus 8 ~f~~~~~~p--~~~~~F~~~M~~~-~~~-------------~~~~~~~~~d~~~~~~~~vvDvGGg~G~----~~~~l~~ 67 (71)
+++++..++ +..+.|...+... +.. ..+.+++.-+ .....+|.|+|.|+|. +++.+++
T Consensus 46 y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~--~~~~~ri~d~GCgtGee~YslA~~l~e 123 (264)
T smart00138 46 YLELLTSHRGEEELAELLDLMTTNETRFFRESKHFEALEEKVLPLLIASRR--HGRRVRIWSAGCSTGEEPYSLAMLLAE 123 (264)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcC--CCCCEEEEeccccCChHHHHHHHHHHH
Confidence 445555565 6677777777642 111 1111221111 2234699999999997 4555555
Q ss_pred hcC
Q 047240 68 GFL 70 (71)
Q Consensus 68 ~~P 70 (71)
..|
T Consensus 124 ~~~ 126 (264)
T smart00138 124 TLP 126 (264)
T ss_pred Hhh
Confidence 443
No 106
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=92.30 E-value=0.21 Score=29.53 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.6
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|||.|+|.++..+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~ 34 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE 34 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc
Confidence 4468999999999999888764
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.27 E-value=0.47 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=19.0
Q ss_pred hCCCceeEeecCCccHHHHHHHHh
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.....+|+|||.|+|..+..+++.
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~ 99 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHL 99 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHH
Confidence 445679999999999988766554
No 108
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.13 E-value=0.41 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+++.++ ......+++|||-|+|.++..++++
T Consensus 63 L~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 63 LKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred HHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc
Confidence 345566655 1235579999999999999998875
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=92.12 E-value=0.3 Score=29.86 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.0
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|+|-|.|+++..|++.
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~e 88 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKE 88 (227)
T ss_pred cccceeeccCCchHHHHHHHHh
Confidence 3449999999999999999874
No 110
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=92.01 E-value=0.15 Score=34.05 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.2
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|+|.|+|.++..+++..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~ 319 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA 319 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC
Confidence 345799999999999999988753
No 111
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.98 E-value=0.21 Score=31.23 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.2
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+..+|++||+|.|.++..+++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~ 94 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK 94 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC
Confidence 44599999999999998888653
No 112
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=91.93 E-value=0.41 Score=28.94 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=24.5
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..++...+ .....+++|+|.|.|..+.-|+++
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~ 51 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ 51 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC
Confidence 45677777 556789999999999999988875
No 113
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=91.76 E-value=0.18 Score=32.52 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.5
Q ss_pred CceeEeecCCccHHHHHHHHh
Q 047240 48 LKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..+|+|||.|+|.++..++++
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC
Confidence 469999999999999988864
No 114
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.74 E-value=0.23 Score=30.09 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.8
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
+...+|+|+|-|.|.++..|.+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~ 34 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE 34 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh
Confidence 35689999999999999988764
No 115
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=91.59 E-value=0.28 Score=30.37 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=19.5
Q ss_pred hCCCceeEeecCCccHHHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.....+|+|||.|+|..+..+++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~ 99 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRV 99 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 3456799999999999887766653
No 116
>PHA03412 putative methyltransferase; Provisional
Probab=91.50 E-value=0.19 Score=31.49 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.6
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|+|-|+|.++..++++.+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~ 72 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMM 72 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcc
Confidence 357999999999999999988643
No 117
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.22 E-value=0.55 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=28.0
Q ss_pred hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+++.-+ .....+|+.||.|+|.+...++++
T Consensus 46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~ 79 (315)
T KOG0820|consen 46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA 79 (315)
T ss_pred HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh
Confidence 3456666666 677889999999999999999886
No 118
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=91.03 E-value=0.46 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHHHHHhchhhhC--CCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFK--GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~--~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..++.+.|+. +. ...+++|+|.++|.++..++++.
T Consensus 9 L~ei~~~~~~-~~~~~~~~vlDlG~aPGGws~~~~~~~ 45 (181)
T PF01728_consen 9 LYEIDEKFKI-FKPGKGFTVLDLGAAPGGWSQVLLQRG 45 (181)
T ss_dssp HHHHHHTTSS-S-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred HHHHHHHCCC-CCcccccEEEEcCCcccceeeeeeecc
Confidence 3456677761 22 45899999999999999988764
No 119
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=90.94 E-value=0.37 Score=32.21 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+....+ .....+|+|+|.|+|..+..+++..
T Consensus 242 v~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~ 272 (444)
T PRK14902 242 VAPALD--PKGGDTVLDACAAPGGKTTHIAELL 272 (444)
T ss_pred HHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 334444 3455799999999999999998865
No 120
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=90.81 E-value=0.35 Score=29.90 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred CChhhhhhcCcchHHHHHHHHHh----cchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 6 KKFWDFVAAEPNLESIFYDAMIA----DSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 6 ~~~f~~~~~~p~~~~~F~~~M~~----~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...++.+.++|+.-..++.+-+. |.....+.+++... .-....+|.|.|-|.+.++.++.+.
T Consensus 28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~~ 93 (219)
T PF05148_consen 28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPNK 93 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S-
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhcccC
Confidence 45677788899887777776654 33334445555444 1234579999999999999877543
No 121
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.65 E-value=0.31 Score=30.13 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=18.0
Q ss_pred CceeEeecCCccHHHHHHHHhc
Q 047240 48 LKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.-+||++|+|.|.++..|++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHH
Confidence 3699999999999999998754
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=90.51 E-value=0.4 Score=31.94 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=21.9
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.....+|+|+|-|+|..+..+++..|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~ 267 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP 267 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC
Confidence 34557999999999999999988765
No 123
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.43 E-value=0.49 Score=31.90 Aligned_cols=25 Identities=40% Similarity=0.947 Sum_probs=21.1
Q ss_pred hCCCceeEeecCCccHHHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+-+..+|||||-|.|+++.-+.-.|
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y 175 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY 175 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc
Confidence 7789999999999999998765443
No 124
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=90.39 E-value=0.32 Score=29.05 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.0
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+|+|+|.|+|.++..+++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~ 67 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG 67 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC
Confidence 35799999999999988887643
No 125
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=90.11 E-value=0.31 Score=31.52 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.8
Q ss_pred CceeEeecCCccHHHHHHHHh
Q 047240 48 LKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..+|+|||.|.|.++..+++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc
Confidence 358999999999999888753
No 126
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.98 E-value=0.74 Score=29.03 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.8
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.-.+|+|+|.|.|+.+-++.+.+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~ 56 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP 56 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc
Confidence 346899999999998888877665
No 127
>PRK14967 putative methyltransferase; Provisional
Probab=89.95 E-value=0.57 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.3
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+|+|+|-|+|.++..+++.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~ 57 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA 57 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc
Confidence 44579999999999999888764
No 128
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=89.72 E-value=1 Score=28.54 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=28.4
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++.-+ -+...+|+.||-|.|++...|+++..
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~ 53 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA 53 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC
Confidence 456777766 55678999999999999999998753
No 129
>PLN02672 methionine S-methyltransferase
Probab=89.68 E-value=0.4 Score=35.75 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.0
Q ss_pred ceeEeecCCccHHHHHHHHhcCC
Q 047240 49 KSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+|+|||-|+|.++..+++++|+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~ 142 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP 142 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC
Confidence 58999999999999999998873
No 130
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=89.55 E-value=0.46 Score=30.77 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+||||.+|+|.+...+++++|.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~ 159 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE 159 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC
Confidence 4679999999999999999999984
No 131
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=89.49 E-value=0.62 Score=30.78 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=25.3
Q ss_pred HHHHHhchhhhCCCceeEeecCCcc-----HHHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTG-----TMARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G-----~~~~~l~~~~P 70 (71)
+..++.+| .+.++-.+.++|||+| .++..|.+.||
T Consensus 90 r~~~E~cd-~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~ 129 (379)
T cd02190 90 RKAAEKCD-SLQSFFILHSLGGGTGSGLGTYVLELLADEFP 129 (379)
T ss_pred HHHHhhCc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcC
Confidence 44566676 4667899999999998 45555666666
No 132
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=89.46 E-value=0.48 Score=28.23 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.6
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++|++.|+|.++.+++++..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga 72 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA 72 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC
Confidence 457899999999999999988653
No 133
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=89.44 E-value=0.36 Score=30.28 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|||-|-|.++..+++.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~ 80 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL 80 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC
Confidence 4579999999999999998874
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=89.35 E-value=2.5 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.8
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+..+++|||-|+|.-+..+++..|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~ 91 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALP 91 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCC
Confidence 45678999999999998888887655
No 135
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=88.85 E-value=0.42 Score=32.74 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=17.7
Q ss_pred HHHHHHhchhhhCCCceeEeecCCc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGT 58 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~ 58 (71)
.-.+...++ +.+...++|||||+
T Consensus 118 ~lGv~~~~~--~~~~~lv~DIGGGS 140 (492)
T COG0248 118 YLGVASTLP--RKGDGLVIDIGGGS 140 (492)
T ss_pred HHHHHhcCC--CCCCEEEEEecCCe
Confidence 345667777 46788999999986
No 136
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.82 E-value=0.98 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=16.0
Q ss_pred CCCceeEeecCCccHHHHHHH
Q 047240 46 KGLKSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~ 66 (71)
.....+||||-|.|-+.--|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCCceEEccCCchHHHHHHH
Confidence 457799999999997655443
No 137
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=88.53 E-value=0.57 Score=31.13 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=20.3
Q ss_pred hCCCceeEeecCCccHHHHHHHHh
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..+..+|+|+|.|+|.++..+++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~ 313 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ 313 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh
Confidence 345579999999999999998865
No 138
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=88.46 E-value=1.2 Score=28.62 Aligned_cols=35 Identities=26% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++.+. -....++||++=|.|..+..|+++.|
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~ 42 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLG 42 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCC
Confidence 356666665 34557999999999999999999886
No 139
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=0.95 Score=28.19 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=21.3
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHH
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~ 66 (71)
+++..+..+.....++|||+|+|.+...+.
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFA 101 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHH
Confidence 334333334556799999999999887765
No 140
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=1.3 Score=27.22 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=23.1
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
.++...+ .....+|++||.|+|..++-+++
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHH
Confidence 3455555 56678999999999998877765
No 141
>PHA03411 putative methyltransferase; Provisional
Probab=88.27 E-value=0.62 Score=29.81 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.6
Q ss_pred CceeEeecCCccHHHHHHHHhcC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+|+|+|-|+|.++..++++.|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~ 87 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK 87 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999998887653
No 142
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=88.19 E-value=1.3 Score=27.31 Aligned_cols=63 Identities=11% Similarity=0.268 Sum_probs=38.2
Q ss_pred CChhhhhhc---CcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 6 KKFWDFVAA---EPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 6 ~~~f~~~~~---~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
++.+.|+.+ ||-..+.=...-.+.+....-++-+.|. .++...+|+|||-..|.-+.-..++.
T Consensus 26 ~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~-~l~p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 26 KSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred ccHHHHHHHhccCHHHHHHHHhhhhhhhhhhheeehhhcc-ccCCCCEEEEccCCCChHHHHHHHhh
Confidence 567888864 5544333222233333333334445665 34567899999999999887666554
No 143
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=87.92 E-value=0.75 Score=29.24 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=20.1
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++|||-|.|.+...++..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~ 117 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK 117 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc
Confidence 457899999999999998876553
No 144
>PTZ00146 fibrillarin; Provisional
Probab=87.35 E-value=0.78 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.9
Q ss_pred hCCCceeEeecCCccHHHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.....+|+|+|.|+|.++..+++..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHh
Confidence 4455799999999999999988764
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=87.32 E-value=1.2 Score=28.42 Aligned_cols=22 Identities=27% Similarity=0.213 Sum_probs=19.1
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|+|.|+|.++..++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~ 194 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP 194 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc
Confidence 3479999999999999998874
No 146
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=87.31 E-value=2.4 Score=28.57 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=30.4
Q ss_pred HHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccH-HHHHHHHhcC
Q 047240 24 DAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT-MARAIATGFL 70 (71)
Q Consensus 24 ~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~~~P 70 (71)
.+|...+......+.+.|+ -....=|+-+||+.|+ ++....++.|
T Consensus 72 ~ai~~M~~ga~~~v~~l~~--~g~i~Gvi~~GGs~GT~lat~aMr~LP 117 (403)
T PF06792_consen 72 EAIEAMARGAARFVSDLYD--EGKIDGVIGIGGSGGTALATAAMRALP 117 (403)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCccEEEEecCCccHHHHHHHHHhCC
Confidence 3444444545556677777 5667889999999998 5556666655
No 147
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=87.19 E-value=1.6 Score=27.39 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=27.4
Q ss_pred HHHHHHHhcchhh----HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 21 IFYDAMIADSELI----TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 21 ~F~~~M~~~~~~~----~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.|...|...++.. +..++...+ .....+||+.|-|+|.++..|++.
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~ 61 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARA 61 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHH
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHH
Confidence 4666666555543 334555556 677899999999999999999975
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=87.09 E-value=0.7 Score=30.34 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=18.7
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|++.|+|.++..++.+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc
Confidence 3468999999999999988754
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=87.00 E-value=2 Score=25.91 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=17.9
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+++|+|.|+|.++.+.+.+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr 74 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSR 74 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHc
Confidence 3468999999999999876544
No 150
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=86.98 E-value=0.61 Score=29.49 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=18.1
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+..+++|||-|+|+.+..+++.|
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~ 55 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY 55 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh
Confidence 44599999999997777776654
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=86.83 E-value=0.79 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+..+..++..|-....++|||-..|.+...|++.+
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F 80 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDF 80 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhh
Confidence 345666666557778999999999999999999876
No 152
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=86.72 E-value=0.8 Score=30.16 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
-..++|+|||-|+|.++.--+++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG 82 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG 82 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC
Confidence 356899999999999998777654
No 153
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=86.04 E-value=1.1 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=21.5
Q ss_pred CCCceeEeecCCccHHHHHHHHhcCC
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.....++|+|-|+|..+..++..-|+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~ 172 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQ 172 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCC
Confidence 33458999999999999999987664
No 154
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=85.92 E-value=1.2 Score=29.97 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=24.0
Q ss_pred HHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
..++..| .+.++-.+-.+|||+|. ++..|...||
T Consensus 122 ~~~E~cd-~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~ 160 (431)
T cd02188 122 READGSD-SLEGFVLCHSIAGGTGSGMGSYLLERLNDRYP 160 (431)
T ss_pred HHHhcCC-CcceeEEEecCCCCcchhHHHHHHHHHHhHcC
Confidence 3445566 36788999999999984 4555666666
No 155
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=85.69 E-value=1 Score=29.95 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=21.4
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.....+|+|+|-|+|..+..+++..|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~ 261 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP 261 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC
Confidence 34457999999999999999887654
No 156
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.28 E-value=3.9 Score=27.28 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.3
Q ss_pred CceeEeecCCccHHHHHHHHh
Q 047240 48 LKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...||.+|.|+|+++..|++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~ 98 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRT 98 (370)
T ss_pred CceEEEeCCCcChHHHHHHHH
Confidence 357999999999999988875
No 157
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=85.02 E-value=1.8 Score=27.78 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=24.3
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++..| ...++-.+.++|||+|. ++..+...||
T Consensus 80 r~~~E~cD-~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 80 RKEAEECD-SLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred HHHHHhCC-CccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 44556666 35678999999998884 4455556665
No 158
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.17 E-value=1.3 Score=26.98 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=19.3
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
-..++|+|.|-|+|.++.+.+-.-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lG 67 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLG 67 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcC
Confidence 456799999999999998876543
No 159
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=83.97 E-value=2.2 Score=28.09 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=20.4
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccH
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGT 60 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~ 60 (71)
.+..++.+| .+.++..+.++|||+|.
T Consensus 79 ir~~~E~cD-~l~gf~i~~sl~GGTGS 104 (382)
T cd06059 79 IRKQVEKCD-SLQGFQITHSLGGGTGS 104 (382)
T ss_pred HHHHHHhCC-CcCceEEEEecCCCcch
Confidence 356677888 46788999999998874
No 160
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.93 E-value=2.7 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=32.9
Q ss_pred HHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 23 YDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 23 ~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.....+.+..-..++.+.|. .+.+...|||+|-..|.-+.-+.++
T Consensus 22 ~~gyRSRAa~KL~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~ 66 (205)
T COG0293 22 KEGYRSRAAYKLLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKK 66 (205)
T ss_pred hccccchHHHHHHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHH
Confidence 33334445555667888885 5788899999999999988877664
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=83.91 E-value=2.9 Score=25.32 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=31.5
Q ss_pred chhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 30 SELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 30 ~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
|...+..+++..+ ++..--|+.+|=|+|-+..+|+++
T Consensus 33 Ss~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~ 69 (194)
T COG3963 33 SSILARKMASVID--PESGLPVLELGPGTGVITKAILSR 69 (194)
T ss_pred cHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhc
Confidence 4445778888898 888889999999999999999975
No 162
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=83.43 E-value=2.7 Score=25.56 Aligned_cols=22 Identities=9% Similarity=-0.182 Sum_probs=19.3
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+++|+|-|.|..+..|+++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~ 55 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ 55 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC
Confidence 4579999999999999999864
No 163
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=83.39 E-value=1.6 Score=29.25 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.2
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|+|.|+|..+..+++..
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~ 274 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELM 274 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHh
Confidence 345799999999999999888764
No 164
>PRK02399 hypothetical protein; Provisional
Probab=83.32 E-value=5.1 Score=27.10 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=27.8
Q ss_pred HHHhcchhhHHHHHHhchhhhCCCceeEeecCCccH-HHHHHHHhcC
Q 047240 25 AMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT-MARAIATGFL 70 (71)
Q Consensus 25 ~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~~~P 70 (71)
+|+..+......+.+.|. -....-|+-+||+.|+ ++..+.++.|
T Consensus 75 ai~~M~~ga~~~v~~L~~--~g~i~gviglGGs~GT~lat~aMr~LP 119 (406)
T PRK02399 75 AMAAMAEGAAAFVRELYE--RGDVAGVIGLGGSGGTALATPAMRALP 119 (406)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCccEEEEecCcchHHHHHHHHHhCC
Confidence 444444444334445666 4568889999999998 4555556555
No 165
>PTZ00387 epsilon tubulin; Provisional
Probab=83.24 E-value=2 Score=29.28 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=24.1
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++..| .+.++-.+..+|||+|. ++..|...||
T Consensus 122 r~~~E~cD-~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~ 161 (465)
T PTZ00387 122 RRQVEQCD-SLQSFFLMHSLGGGTGSGLGTRILGMLEDEFP 161 (465)
T ss_pred HHHHHhcc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcc
Confidence 45566676 46678899999999984 3444555555
No 166
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=83.15 E-value=1.6 Score=27.39 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=10.6
Q ss_pred CCCceeEeecCCc
Q 047240 46 KGLKSLVDVGGGT 58 (71)
Q Consensus 46 ~~~~~vvDvGGg~ 58 (71)
.+...++|||||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 4567999999985
No 167
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=82.78 E-value=4.7 Score=27.19 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=15.9
Q ss_pred CCceeEeecCCccHHHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~ 66 (71)
..+.|||||-|+|.++.-.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAa 196 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAA 196 (517)
T ss_pred CCcEEEEecCCccHHHHHHH
Confidence 34899999999999876443
No 168
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=82.68 E-value=2.3 Score=26.53 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=20.1
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|+|.|+|..+..+++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~ 93 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALM 93 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHc
Confidence 345789999999999999888754
No 169
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=82.66 E-value=3 Score=26.79 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
.++.... +....+|+|+|-|+|.++.+.+.
T Consensus 173 ~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~ 202 (329)
T TIGR01177 173 AMVNLAR--VTEGDRVLDPFCGTGGFLIEAGL 202 (329)
T ss_pred HHHHHhC--CCCcCEEEECCCCCCHHHHHHHH
Confidence 3444444 55667999999999999887654
No 170
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=82.02 E-value=2.1 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=21.5
Q ss_pred hchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 40 DCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 40 ~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..+ -..+..+++||+|.|.+...|+.++
T Consensus 38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC 65 (201)
T PF05401_consen 38 ALP--RRRYRRALEVGCSIGVLTERLAPRC 65 (201)
T ss_dssp HHT--TSSEEEEEEE--TTSHHHHHHGGGE
T ss_pred hcC--ccccceeEecCCCccHHHHHHHHhh
Confidence 455 5677899999999999999998764
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=81.83 E-value=2.2 Score=27.78 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=18.7
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++|||-|+|.....++.+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~ 137 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY 137 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC
Confidence 357899999999987777766654
No 172
>COG5023 Tubulin [Cytoskeleton]
Probab=81.76 E-value=3 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=27.8
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcCC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFLI 71 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~ 71 (71)
++..++..| .+.++..+=-+|||+|. ++.+|+..||.
T Consensus 120 IrreAd~cD-~LqGF~l~HS~gGGTGSG~GslLLerl~~eypk 161 (443)
T COG5023 120 IRREADGCD-GLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK 161 (443)
T ss_pred HHHHhhcCc-cccceeeeeeccCcCcccHHHHHHHHHHHhcch
Confidence 345567777 57888999999999986 56677777773
No 173
>PRK04148 hypothetical protein; Provisional
Probab=81.66 E-value=3.5 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=20.4
Q ss_pred HHHHhchhhhCCCceeEeecCCccH-HHHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGT-MARAIAT 67 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~ 67 (71)
-+.+.++ -....+++|||=|.|. ++..+.+
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~ 37 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKE 37 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHH
Confidence 3555555 2334689999988996 7666664
No 174
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=81.45 E-value=3.8 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=30.0
Q ss_pred HHhcchh----hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 26 MIADSEL----ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 26 M~~~~~~----~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
|...++. .+..++...+ .+...+|+|.|-|+|.++..|++.
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~ 115 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARA 115 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHh
Confidence 5554443 2334555555 778899999999999999999863
No 175
>PLN03075 nicotianamine synthase; Provisional
Probab=81.39 E-value=3.8 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=16.1
Q ss_pred CCceeEeecCCccHHHHH--HHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARA--IATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~--l~~~~P 70 (71)
..++|+|||-|.|-+... .++.+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p 148 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP 148 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC
Confidence 568999999998844333 334455
No 176
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=81.33 E-value=1.5 Score=29.98 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=9.7
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|||||+
T Consensus 132 ~~~lviDIGGGS 143 (496)
T PRK11031 132 DQRLVVDIGGAS 143 (496)
T ss_pred CCEEEEEecCCe
Confidence 346899999986
No 177
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.32 E-value=4.7 Score=25.69 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=21.4
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
+++..-+ ...+.+++|+|-|+|-...+|..
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~ 145 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRD 145 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHH
Confidence 3344444 34589999999999988777653
No 178
>PLN02823 spermine synthase
Probab=80.62 E-value=2 Score=28.09 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.1
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+|+-||||.|..+.++++..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~ 125 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK 125 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC
Confidence 44678899999999999998744
No 179
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=80.60 E-value=2.5 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=20.3
Q ss_pred hCCCceeEeecCCccHHHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.....+|+|+|-|+|..+..+++..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~ 259 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELM 259 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc
Confidence 3455789999999999988888754
No 180
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=80.30 E-value=4.4 Score=24.71 Aligned_cols=22 Identities=9% Similarity=-0.165 Sum_probs=19.2
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|+|.|.|..+..|+++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~ 58 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ 58 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC
Confidence 4579999999999999998864
No 181
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=79.62 E-value=3.3 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.573 Sum_probs=24.6
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++.+| .+.++-.+-.+|||+|. ++..|...||
T Consensus 117 r~~~E~cd-~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~ 156 (446)
T cd02189 117 RKEVEKCD-SFEGFLVLHSLAGGTGSGLGSRVTELLRDEYP 156 (446)
T ss_pred HHHHHhCC-CccceEEEecCCCCcchHHHHHHHHHHHHhcC
Confidence 34466777 47788999999999985 4444555565
No 182
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=79.42 E-value=2.9 Score=28.07 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.6
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+|+|+|.|+|..+..+++..
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~ 272 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELM 272 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHh
Confidence 44789999999999888777643
No 183
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.29 E-value=4.8 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...++.|+ ......+++|||-++|-+..-++++
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHc
Confidence 45567776 3446789999999999988777654
No 184
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.24 E-value=2.5 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
.+++..+ -....++||+|.|.|....+.++
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar 92 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAAR 92 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhh
Confidence 3444444 34558999999999986655543
No 185
>PLN00220 tubulin beta chain; Provisional
Probab=79.06 E-value=3.5 Score=27.90 Aligned_cols=35 Identities=26% Similarity=0.567 Sum_probs=24.6
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++.+| .+.++-.+-.+|||+|. ++..|...||
T Consensus 121 r~~~E~cd-~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 121 RKEAENCD-CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred HHHHHhCc-CcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 44566676 47788999999999965 3335556666
No 186
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=79.01 E-value=1.2 Score=28.54 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.5
Q ss_pred ceeEeecCCccHHHHHHHHh
Q 047240 49 KSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~ 68 (71)
..|+|||-|.|-++..|++-
T Consensus 91 ~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred ceEEEeccCccccchhhHhh
Confidence 56999999999999988763
No 187
>PRK10854 exopolyphosphatase; Provisional
Probab=78.50 E-value=1.8 Score=29.73 Aligned_cols=12 Identities=50% Similarity=1.096 Sum_probs=9.8
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
+...|||||||+
T Consensus 137 ~~~lvvDIGGGS 148 (513)
T PRK10854 137 GRKLVIDIGGGS 148 (513)
T ss_pred CCeEEEEeCCCe
Confidence 346899999986
No 188
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=78.43 E-value=3.8 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.0
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+.++++.||.+.|.-+..++++.|+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~ 69 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPE 69 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcc
Confidence 457789999999999999999998773
No 189
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=78.11 E-value=3.2 Score=27.89 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=23.1
Q ss_pred HHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
..++.+| .+.++..+-.+|||+|. ++..|...||
T Consensus 121 ~~~E~cD-~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~ 159 (425)
T cd02187 121 KEAESCD-CLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 159 (425)
T ss_pred HhhccCC-CcceEEEEeecCCCccccHHHHHHHHHHHhcC
Confidence 3445565 36678899999999984 3345666666
No 190
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=78.07 E-value=1.4 Score=27.31 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=15.9
Q ss_pred CCceeEeecCCccHHHHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~ 67 (71)
...+.+|+|.|.|.+...++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl 75 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL 75 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHH
Confidence 468999999999999987754
No 191
>PHA01634 hypothetical protein
Probab=77.98 E-value=2.1 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.0
Q ss_pred CCceeEeecCCccHHHHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~ 67 (71)
..++|+|||+..|.-+.-++-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l 48 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL 48 (156)
T ss_pred cCCEEEEecCCccchhhHHhh
Confidence 358999999999988776654
No 192
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=77.69 E-value=1 Score=24.14 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.0
Q ss_pred hhhCCCceeEeecCCccH
Q 047240 43 EVFKGLKSLVDVGGGTGT 60 (71)
Q Consensus 43 ~~~~~~~~vvDvGGg~G~ 60 (71)
|.|-+.+.++|+||=++.
T Consensus 31 WVFIn~kLv~DlGG~H~~ 48 (90)
T TIGR02148 31 WVFINNKLVVDIGGQHPA 48 (90)
T ss_pred EEEECCEEEEEccCcCCC
Confidence 556677999999996654
No 193
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=77.17 E-value=1.6 Score=27.27 Aligned_cols=12 Identities=50% Similarity=0.853 Sum_probs=9.9
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
...-|||||||+
T Consensus 140 ~dg~VVDiGGGT 151 (277)
T COG4820 140 DDGGVVDIGGGT 151 (277)
T ss_pred CCCcEEEeCCCc
Confidence 457899999986
No 194
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=76.61 E-value=2.3 Score=26.18 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=16.9
Q ss_pred CceeEeecCCccHHHHHHHHhcC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+++|||-|.|.=..-++=.+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p 90 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP 90 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc
Confidence 48999999999875555554444
No 195
>PLN02476 O-methyltransferase
Probab=76.32 E-value=9.3 Score=24.45 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.7
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+.+++++||.++|..+..+++.-|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~ 141 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLP 141 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCC
Confidence 45678999999999999999988765
No 196
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.26 E-value=3 Score=24.80 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=20.0
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARA 64 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~ 64 (71)
.+-+.|+ --....+.|+|+|.|.++.+
T Consensus 39 ~Ih~Tyg--diEgkkl~DLgcgcGmLs~a 65 (185)
T KOG3420|consen 39 TIHNTYG--DIEGKKLKDLGCGCGMLSIA 65 (185)
T ss_pred HHHhhhc--cccCcchhhhcCchhhhHHH
Confidence 4556666 33457999999999999844
No 197
>PLN00221 tubulin alpha chain; Provisional
Probab=75.85 E-value=5.1 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.537 Sum_probs=24.9
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
.+..++.+| .+.++-.+-.+|||+|. ++..|...||
T Consensus 122 ir~~~E~cD-~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~ 162 (450)
T PLN00221 122 IRKLADNCT-GLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
T ss_pred HHHHHHhcc-CccceeEeeccCCCccchHHHHHHHHHHHhcc
Confidence 345567777 47788999999999976 3334555555
No 198
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=75.54 E-value=4.4 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=19.9
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..++|+=||||.|..+.++++..|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ 99 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP 99 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC
Confidence 345888899999999999998654
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=74.94 E-value=3.2 Score=27.13 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.2
Q ss_pred ceeEeecCCccHHHHHHHHhc
Q 047240 49 KSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..++|++.|+|.++..+.+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~ 219 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF 219 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC
Confidence 369999999999999888754
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=74.55 E-value=3 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.1
Q ss_pred eeEeecCCccHHHHHHHHhcCC
Q 047240 50 SLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 50 ~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+++|||-|-|.=..-++=.+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~ 72 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD 72 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT
T ss_pred eEEecCCCCCChhHHHHHhCCC
Confidence 7999999988866666655564
No 201
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=74.39 E-value=3.9 Score=26.81 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.4
Q ss_pred ceeEeecCCccHHHHHHHHhc
Q 047240 49 KSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+++|++.|+|.++..+++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~ 228 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF 228 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC
Confidence 469999999999999888764
No 202
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=73.54 E-value=5.1 Score=27.02 Aligned_cols=35 Identities=20% Similarity=0.528 Sum_probs=23.5
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++..| .+.++-.+-.+|||+|. ++..|...||
T Consensus 122 r~~~E~cD-~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~ 161 (434)
T cd02186 122 RKLADNCT-GLQGFLIFHSFGGGTGSGFGSLLLERLSVDYG 161 (434)
T ss_pred HHHHhcCC-CcceeEEEeccCCCcchhHHHHHHHHHHHhcC
Confidence 34455566 36778899999999975 3344555565
No 203
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=73.30 E-value=3.1 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=19.5
Q ss_pred CceeEeecCCccHHHHHHHHhcC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+++|++.|+|..+..+++..+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~ 80 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG 80 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC
Confidence 45899999999999999987543
No 204
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=73.28 E-value=3.1 Score=26.59 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.6
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..++++.|||+|.|++...|...
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e 93 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE 93 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc
Confidence 45789999999999999888754
No 205
>PLN00222 tubulin gamma chain; Provisional
Probab=72.89 E-value=6.4 Score=26.83 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=23.3
Q ss_pred HHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
..++.+| .+.++-.+-.+|||+|. ++..|...||
T Consensus 124 ~~~E~cd-~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~ 162 (454)
T PLN00222 124 READGSD-SLEGFVLCHSIAGGTGSGMGSYLLEALNDRYS 162 (454)
T ss_pred HHHHhCC-CccceEEeecCCCCccchHHHHHHHHHHhhcC
Confidence 3445566 36778899999999874 4455556665
No 206
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=72.64 E-value=11 Score=23.93 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.6
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
+.....+|+.|.|.|.++..|....+
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~ 41 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQ 41 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhh
Confidence 56778999999999999999988764
No 207
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=72.32 E-value=5.5 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=27.6
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+..++.+| .+.++..+.|++||.|-++..+++.
T Consensus 141 IR~~vEeCD-~LQGFqi~~sl~gG~sG~gs~lLE~ 174 (493)
T cd06060 141 LRFYVEECD-YLQGFQVLCDLHDGFSGVGAKCLEH 174 (493)
T ss_pred HHHHHHhCc-ccccEEEEEecCCcccchHHHHHHH
Confidence 456678888 4778999999999998888877765
No 208
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=71.79 E-value=4.8 Score=25.60 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=8.9
Q ss_pred ceeEeecCCc
Q 047240 49 KSLVDVGGGT 58 (71)
Q Consensus 49 ~~vvDvGGg~ 58 (71)
..++|||||+
T Consensus 127 ~~v~DiGGGS 136 (300)
T TIGR03706 127 GLVVDIGGGS 136 (300)
T ss_pred cEEEEecCCe
Confidence 5999999986
No 209
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=70.67 E-value=5.9 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=19.2
Q ss_pred hCCCceeEeecCCccHHHHHHHHh
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.....+|+++|.|.|..+..+++.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT
T ss_pred hcCCceEEEECCccchhHHHHHhc
Confidence 456689999999999988888775
No 210
>PTZ00335 tubulin alpha chain; Provisional
Probab=70.66 E-value=6.2 Score=26.81 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=23.4
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++..| .+.++-.+-.+|||+|. ++..|...||
T Consensus 123 r~~~E~cD-~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp 162 (448)
T PTZ00335 123 RKLADNCT-GLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (448)
T ss_pred HHhHHhcc-CccceeEeeccCCCccchHHHHHHHHHHHhcc
Confidence 34456666 46778899999999976 3334555555
No 211
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=70.50 E-value=6.2 Score=26.86 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=19.7
Q ss_pred CCceeEeecCCccHHHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+..+++=+|||.|-.+.++++ ||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~ 312 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQ 312 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCC
Confidence 456788899999999999876 773
No 212
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=70.46 E-value=12 Score=23.69 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=33.5
Q ss_pred HHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 24 DAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 24 ~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..|..+....+...++.. .++..+|+.||=|.|.....|.++-|.
T Consensus 81 ~VMm~WEtpiMha~A~ai---~tkggrvLnVGFGMgIidT~iQe~~p~ 125 (271)
T KOG1709|consen 81 GVMMRWETPIMHALAEAI---STKGGRVLNVGFGMGIIDTFIQEAPPD 125 (271)
T ss_pred hhhhhhhhHHHHHHHHHH---hhCCceEEEeccchHHHHHHHhhcCCc
Confidence 345566555555555554 477899999999999999999888773
No 213
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=69.03 E-value=6.8 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....++||||-++|-.+..++++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc
Confidence 45679999999999999888875
No 214
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=68.81 E-value=5.4 Score=23.71 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=17.7
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+++|+=+|+|.+..+.+++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR 63 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR 63 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT
T ss_pred CCCeEEEcCCccCccHHHHHhc
Confidence 5689999999999999988875
No 215
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=68.46 E-value=7.4 Score=21.65 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHH
Q 047240 16 PNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTM 61 (71)
Q Consensus 16 p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~ 61 (71)
.-+..+|..+|...+...+-.+++.-|. ..-..+||=+-||+|.+
T Consensus 46 Dyr~~rf~~~kk~vn~n~~m~LI~e~Pp-~e~d~RVV~CdGg~~aL 90 (120)
T KOG3456|consen 46 DYRGNRFVKWKKDVNENSAMELISEVPP-IEVDGRVVACDGGTPAL 90 (120)
T ss_pred HHhHHHHHhhhhhcCccchhhhhhcCCh-hhccceEEEecCCCCCC
Confidence 4567899999999887766677777762 33357777787887764
No 216
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=66.59 E-value=15 Score=23.16 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCcc
Q 047240 15 EPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTG 59 (71)
Q Consensus 15 ~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G 59 (71)
||- ...|.+++.......+...+... ......++|||++..
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~~~---~~~GAdiIDVg~~~~ 49 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLALKQ---AEAGADYLDVNAGTA 49 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHHHH---HHCCCCEEEECCCCC
Confidence 555 77888888876554433333333 356689999999864
No 217
>PTZ00010 tubulin beta chain; Provisional
Probab=66.42 E-value=9.3 Score=25.93 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=23.3
Q ss_pred HHHHHhchhhhCCCceeEeecCCccH-----HHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P 70 (71)
+..++.+| .+.++-.+-.+|||+|. ++..|...||
T Consensus 121 rk~~E~cd-~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 121 RKEAESCD-CLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhhhcc-CccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 34456666 36788899999999984 3344555555
No 218
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=65.73 E-value=4 Score=26.94 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=10.1
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....+||||||+
T Consensus 153 ~G~mvvDIGgGT 164 (342)
T COG1077 153 TGSMVVDIGGGT 164 (342)
T ss_pred CCCEEEEeCCCc
Confidence 347999999987
No 219
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=65.66 E-value=3.3 Score=25.40 Aligned_cols=12 Identities=42% Similarity=0.977 Sum_probs=9.0
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-.++|||||-|.
T Consensus 197 l~~idiGGG~~~ 208 (251)
T PF02784_consen 197 LEFIDIGGGFGV 208 (251)
T ss_dssp -SEEEEESSB-S
T ss_pred ccEEEeeCCCCC
Confidence 689999999875
No 220
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=65.60 E-value=6.6 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.2
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
-+...++|||-|+|-++...+++
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHh
Confidence 35689999999999999877765
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=65.56 E-value=7.8 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.5
Q ss_pred CCceeEeecCCccHHHHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~ 67 (71)
..++|+=||||.|..+.+++|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHC
Confidence 345666699999999999998
No 222
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=65.24 E-value=8.6 Score=25.18 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=17.8
Q ss_pred ceeEeecCCccHHHHHHHHhc
Q 047240 49 KSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..||=||||-|.-+++|+..+
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred ceEEEECCChHHHHHHHHHHH
Confidence 578889999999998888765
No 223
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=64.83 E-value=2.9 Score=28.25 Aligned_cols=24 Identities=33% Similarity=0.399 Sum_probs=19.8
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+++|||-|.|+.+.++-.-+|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pd 137 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPD 137 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCC
Confidence 357999999999998888777764
No 224
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=63.69 E-value=9.6 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=17.2
Q ss_pred CCceeEeecCCccHHHHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~ 67 (71)
...+|+|+|.|+|.++.+.+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~ 240 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM 240 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh
Confidence 457999999999998876554
No 225
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=63.29 E-value=18 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccH
Q 047240 19 ESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGT 60 (71)
Q Consensus 19 ~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~ 60 (71)
...|.+++.......+...+..+ ......++|||++.+.
T Consensus 13 ~~~~~~~~~~~~~d~~~~~A~~~---~~~GAdiIDIG~~~~~ 51 (252)
T cd00740 13 SKKFRELIKAEDYDEALDVARQQ---VEGGAQILDLNVDYGG 51 (252)
T ss_pred cHHHHHHHHcCCHHHHHHHHHHH---HHCCCCEEEECCCCCC
Confidence 46677777665543333333333 3467899999998763
No 226
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=63.27 E-value=3.7 Score=23.18 Aligned_cols=13 Identities=31% Similarity=0.527 Sum_probs=10.0
Q ss_pred CCCceeEeecCCc
Q 047240 46 KGLKSLVDVGGGT 58 (71)
Q Consensus 46 ~~~~~vvDvGGg~ 58 (71)
....-.||||||-
T Consensus 55 ~~~~gkV~lGGGl 67 (126)
T PF12757_consen 55 DENAGKVNLGGGL 67 (126)
T ss_pred ccCCCeeeCCCCc
Confidence 3457899999984
No 227
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=63.10 E-value=5.3 Score=25.29 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.2
Q ss_pred CCceeEeecCCccHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARA 64 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~ 64 (71)
....|+|||-|+|-....
T Consensus 50 ~~~~iLDIGCGsGLSg~v 67 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSV 67 (270)
T ss_pred CCcEEEEeccCCCcchhe
Confidence 378999999999965543
No 228
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=62.61 E-value=25 Score=21.17 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=17.4
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHH
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTM 61 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~ 61 (71)
+..++.+| ....+-.+.-+|||+|.-
T Consensus 115 r~~~e~~d-~~~~~~i~~slgGGTGSG 140 (216)
T PF00091_consen 115 RKEIEKCD-SLDGFFIVHSLGGGTGSG 140 (216)
T ss_dssp HHHHHTST-TESEEEEEEESSSSHHHH
T ss_pred chhhcccc-ccccceecccccceeccc
Confidence 34444445 255678889999999873
No 229
>PF14881 Tubulin_3: Tubulin domain
Probab=62.20 E-value=14 Score=22.00 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=27.1
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+.+++.+| ...++..++|+-+|-|-++..+++.
T Consensus 64 lR~f~EECD-~lQGfQ~~~d~d~gwgGfas~~Le~ 97 (180)
T PF14881_consen 64 LRFFLEECD-SLQGFQVLTDVDDGWGGFASSLLEH 97 (180)
T ss_pred HHHHHHHcc-cccceEEEecCCCchHhHHHHHHHH
Confidence 456788888 4778999999988888888777654
No 230
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=62.10 E-value=8.3 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.3
Q ss_pred ceeEeecCCcc--HHHHHHHHhcCC
Q 047240 49 KSLVDVGGGTG--TMARAIATGFLI 71 (71)
Q Consensus 49 ~~vvDvGGg~G--~~~~~l~~~~P~ 71 (71)
.+.||.-|.-| -+..+|.+++|+
T Consensus 23 ~H~cN~~G~WG~gGia~al~~k~p~ 47 (152)
T cd03331 23 VHCVDDSGHWGRGGLFTALEKRSDQ 47 (152)
T ss_pred EEEECCCCCCCcchHHHHHHHhCCc
Confidence 57888888777 499999999995
No 231
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=61.15 E-value=36 Score=24.37 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=36.2
Q ss_pred hhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhC-CCceeEeecCCccHHHHHHHHh
Q 047240 8 FWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFK-GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 8 ~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~-~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.|+-+++||-.-..+.+|.. .++++..+.... ...++.=+|||.|-+..+.+++
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lka 388 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKA 388 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHH
Confidence 46777788877777777653 456666552222 2445556899999998888765
No 232
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=61.08 E-value=10 Score=27.13 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|+|.|+|.++..+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~ 559 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG 559 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC
Confidence 4579999999999999998874
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=60.93 E-value=8.1 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred CCceeEeecCCccHHHHHHHHhcC
Q 047240 47 GLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+|+|.+-|+|.++.+++++.+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~ 54 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNE 54 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999988654
No 234
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=60.00 E-value=4.8 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=10.8
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 188 ~~~~lDiGGGf~v 200 (346)
T cd06829 188 QLKWLNLGGGHHI 200 (346)
T ss_pred cCcEEEcCCCcCC
Confidence 4689999999864
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=59.68 E-value=26 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..++..++ ...+|||+|-|.|.-...|+++
T Consensus 68 ~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~a 97 (319)
T TIGR03439 68 SDIAASIP----SGSMLVELGSGNLRKVGILLEA 97 (319)
T ss_pred HHHHHhcC----CCCEEEEECCCchHHHHHHHHH
Confidence 34555544 3458999999999876666554
No 236
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=59.37 E-value=29 Score=23.56 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=22.8
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+...|+. ..+.-.++=+||++|..++.|+.+.
T Consensus 172 ~l~k~~~~-~~~~lp~I~~G~s~G~yla~l~~k~ 204 (403)
T PF11144_consen 172 DLKKIFPK-NGGGLPKIYIGSSHGGYLAHLCAKI 204 (403)
T ss_pred HHHHhhhc-ccCCCcEEEEecCcHHHHHHHHHhh
Confidence 45566762 3332355568999999999998764
No 237
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=59.00 E-value=5.3 Score=26.22 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=10.8
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 207 ~~~~IDiGGGf~v 219 (379)
T cd06836 207 QITRIDIGGGLPV 219 (379)
T ss_pred CCcEEEeCCcccc
Confidence 3689999999973
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=58.99 E-value=32 Score=21.41 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.5
Q ss_pred hCCCceeEeecCCccHHHHHHHHh
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
+-..++|+|.|-|+|-.+++-+++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a 100 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA 100 (218)
T ss_pred ccccceeeecccccChHHHHHHHh
Confidence 556789999999999888776654
No 239
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.79 E-value=13 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.5
Q ss_pred CceeEeecCCccHHHHHHHHh
Q 047240 48 LKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+++||-|+|..+..+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~ 64 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASV 64 (209)
T ss_pred ceeEEEecCCcchHHHHHHHh
Confidence 578999999999999888765
No 240
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=58.50 E-value=11 Score=24.60 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=7.8
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....+||||||+
T Consensus 145 ~g~miVDIG~Gt 156 (326)
T PF06723_consen 145 RGSMIVDIGGGT 156 (326)
T ss_dssp S-EEEEEE-SS-
T ss_pred CceEEEEECCCe
Confidence 457999999986
No 241
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=58.32 E-value=32 Score=22.46 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=39.0
Q ss_pred ChhhhhhcCcchHHHHHHHHHhcch----hhHHHHHHhchhhhCCCceeEeecCCccHHHH
Q 047240 7 KFWDFVAAEPNLESIFYDAMIADSE----LITIVVIEDCKEVFKGLKSLVDVGGGTGTMAR 63 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~~~~----~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~ 63 (71)
..++.+.+||+.-..++.+-+.... .....+++... .-+...+|-|+|-|.+.++.
T Consensus 137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh
Confidence 4677788899988888888775322 23445555554 13466899999999988764
No 242
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=57.77 E-value=5.6 Score=25.98 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=10.7
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 203 ~~~~idiGGG~~~ 215 (379)
T cd06841 203 ELEYLDLGGGFPA 215 (379)
T ss_pred CCCEEEeCCCcCc
Confidence 3589999999865
No 243
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=55.91 E-value=33 Score=22.77 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=16.2
Q ss_pred CCceeEeecCCccH-HHHHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGT-MARAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~-~~~~l~~~~P~ 71 (71)
....+|=+||+.|- +++-++.+||+
T Consensus 111 ~~~pwI~~GgSY~G~Laaw~r~kyP~ 136 (434)
T PF05577_consen 111 PNSPWIVFGGSYGGALAAWFRLKYPH 136 (434)
T ss_dssp CC--EEEEEETHHHHHHHHHHHH-TT
T ss_pred CCCCEEEECCcchhHHHHHHHhhCCC
Confidence 34456669999765 67777888986
No 244
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=55.60 E-value=16 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=23.6
Q ss_pred HhchhhhCCCceeEeecCCccH-----HHHHHHHhcCC
Q 047240 39 EDCKEVFKGLKSLVDVGGGTGT-----MARAIATGFLI 71 (71)
Q Consensus 39 ~~~d~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~ 71 (71)
+..| .++++..+--|.||+|. ++.+|..+||.
T Consensus 127 d~~D-sleGF~l~hSiAGGTGSGlGS~llErL~drypk 163 (448)
T KOG1374|consen 127 DGSD-SLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPK 163 (448)
T ss_pred cCCC-cccceeEEEeecCCCCcchHHHHHHHHHHhchh
Confidence 3444 57788888899998885 56777788873
No 245
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=54.82 E-value=6.5 Score=26.14 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.9
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 224 ~l~~iDiGGGf~v 236 (409)
T cd06830 224 NLRYLDIGGGLGV 236 (409)
T ss_pred CCcEEEcCCCccc
Confidence 3689999999874
No 246
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=54.82 E-value=6.8 Score=26.03 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.5
Q ss_pred ceeEeecCCcc
Q 047240 49 KSLVDVGGGTG 59 (71)
Q Consensus 49 ~~vvDvGGg~G 59 (71)
-.++|||||-|
T Consensus 204 l~~ldiGGGf~ 214 (394)
T cd06831 204 MNMLDIGGGFT 214 (394)
T ss_pred CCEEEeCCCcC
Confidence 58999999974
No 247
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=54.76 E-value=21 Score=22.11 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.5
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.++.+.++.||.+.|.-+..++..-|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~ 82 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALP 82 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCC
Confidence 56789999999999999999998877
No 248
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=54.56 E-value=7 Score=25.75 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.7
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 192 ~~~~iDiGGGfgv 204 (380)
T TIGR01047 192 QMDWVNFGGGHHI 204 (380)
T ss_pred CCCEEEeCCCcCC
Confidence 4679999999864
No 249
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=54.50 E-value=8 Score=24.24 Aligned_cols=10 Identities=60% Similarity=1.175 Sum_probs=8.8
Q ss_pred ceeEeecCCc
Q 047240 49 KSLVDVGGGT 58 (71)
Q Consensus 49 ~~vvDvGGg~ 58 (71)
..+||||||+
T Consensus 137 ~~vvDIGggt 146 (267)
T PRK15080 137 GAVVDIGGGT 146 (267)
T ss_pred cEEEEeCCCc
Confidence 6899999986
No 250
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=53.84 E-value=7.5 Score=27.28 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=10.0
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 172 ~~vlV~DlGGGT 183 (579)
T COG0443 172 KTVLVYDLGGGT 183 (579)
T ss_pred cEEEEEEcCCCC
Confidence 357899999986
No 251
>PF14514 TetR_C_9: Transcriptional regulator, TetR, C-terminal; PDB: 2QTQ_D 2RHA_A.
Probab=52.80 E-value=32 Score=19.31 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=18.5
Q ss_pred ChhhhhhcCcchHHHHHHHHHhcchh
Q 047240 7 KFWDFVAAEPNLESIFYDAMIADSEL 32 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~~~~~ 32 (71)
.+|+++.++|+..+.++..|......
T Consensus 14 ~~i~~y~~~P~~~rL~~~~l~~~~~~ 39 (129)
T PF14514_consen 14 GVIRYYFDFPYLNRLLNRLLHEAEHE 39 (129)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHS-HH
T ss_pred HHHHHHHhCCcHHHHHHHHHhcccHH
Confidence 35778889999999998877765443
No 252
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=52.70 E-value=11 Score=24.02 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=9.8
Q ss_pred hCCCceeEeecC
Q 047240 45 FKGLKSLVDVGG 56 (71)
Q Consensus 45 ~~~~~~vvDvGG 56 (71)
+.+..+|+||||
T Consensus 95 ~p~~~tIiDIGG 106 (262)
T TIGR02261 95 NPEARAVLDIGA 106 (262)
T ss_pred CCCCCEEEEeCC
Confidence 456789999998
No 253
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=52.62 E-value=34 Score=18.72 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=16.0
Q ss_pred CCCceeEeecCCccHH-HHHHHHhcC
Q 047240 46 KGLKSLVDVGGGTGTM-ARAIATGFL 70 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~-~~~l~~~~P 70 (71)
.+.-.++|+=||+-.. +..++.++|
T Consensus 59 ~~vivltDl~GGSp~n~a~~~~~~~~ 84 (116)
T TIGR00824 59 EEVLFLVDIFGGSPYNAAARIIVDKP 84 (116)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHhhcC
Confidence 3457899996666664 444555555
No 254
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=52.31 E-value=18 Score=23.16 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.2
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.-.+|+|.++|-|..+++.+++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r 155 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER 155 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc
Confidence 4579999999999999988775
No 255
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=52.31 E-value=30 Score=18.17 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=17.9
Q ss_pred hCCCceeEeecCCccH-HHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGT-MARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~-~~~~l~~~~ 69 (71)
..+.+.+||...|.|. .+..|+++.
T Consensus 19 ~~~~kivvD~~~G~~~~~~~~ll~~l 44 (104)
T PF02879_consen 19 KSGLKIVVDCMNGAGSDILPRLLERL 44 (104)
T ss_dssp HTTCEEEEE-TTSTTHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4567999999988875 666676654
No 256
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=51.80 E-value=32 Score=18.80 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=17.1
Q ss_pred HHHhchhhhCCCceeEeecCCccH-HHHHHHHh
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGT-MARAIATG 68 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~-~~~~l~~~ 68 (71)
+++.++ ...+.-.++|+-||+-. ....+...
T Consensus 50 ~i~~~~-~~~~viil~Dl~GGSp~n~~~~~~~~ 81 (122)
T cd00006 50 ALAELD-SGEGVLILTDLFGGSPNNAAARLSME 81 (122)
T ss_pred HHHHhC-CCCcEEEEEeCCCCCHHHHHHHHHhc
Confidence 344444 12456789999555544 44555444
No 257
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=51.71 E-value=17 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=20.6
Q ss_pred HHHHhchhh-hCCCceeEeecCCccHHHHHHH
Q 047240 36 VVIEDCKEV-FKGLKSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 36 ~~~~~~d~~-~~~~~~vvDvGGg~G~~~~~l~ 66 (71)
.+.+-+|.. ......++|+|+|.|+....++
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~a 211 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVA 211 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHH
Confidence 344444421 3456899999999999766554
No 258
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=51.30 E-value=8.1 Score=25.21 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=10.8
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 204 ~~~~idiGGGf~~ 216 (377)
T cd06843 204 DLDVVNVGGGIGV 216 (377)
T ss_pred CCcEEEecCcccc
Confidence 4689999999865
No 259
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=51.29 E-value=8.1 Score=25.29 Aligned_cols=12 Identities=42% Similarity=0.911 Sum_probs=10.3
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-.++|||||-|.
T Consensus 206 ~~~idiGGGf~~ 217 (368)
T cd06840 206 VRILNVGGGLGI 217 (368)
T ss_pred CCEEEecCcccC
Confidence 689999999865
No 260
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=51.12 E-value=14 Score=22.95 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.7
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
..+.|+=||||.|..+.++++..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~ 98 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP 98 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST
T ss_pred CcCceEEEcCCChhhhhhhhhcC
Confidence 45667779999999999998643
No 261
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=50.45 E-value=44 Score=19.62 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
+..++..-. |.....|+|-=-|+|+++++-+..
T Consensus 17 A~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~ 49 (179)
T PF01170_consen 17 AAALLNLAG--WRPGDVVLDPFCGSGTILIEAALM 49 (179)
T ss_dssp HHHHHHHTT----TTS-EEETT-TTSHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHH
Confidence 445556656 667789999999999999876654
No 262
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=50.25 E-value=9.6 Score=24.04 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.4
Q ss_pred CceeEeecCCccHHHHHHHH
Q 047240 48 LKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~ 67 (71)
..+++|+|.|.|.....++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p 132 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAP 132 (288)
T ss_pred CeeEEeccCCCcchhhhhcc
Confidence 58999999999988766543
No 263
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=49.64 E-value=15 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=12.4
Q ss_pred ecCCccH-HHHHHHHhcCC
Q 047240 54 VGGGTGT-MARAIATGFLI 71 (71)
Q Consensus 54 vGGg~G~-~~~~l~~~~P~ 71 (71)
=|||.|. +...|++.+|+
T Consensus 8 QGGGiG~~iv~~lr~~~~~ 26 (131)
T PF12953_consen 8 QGGGIGKQIVEKLRKELPE 26 (131)
T ss_pred CCChhHHHHHHHHHHhCCC
Confidence 4889998 45566666674
No 264
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=49.45 E-value=32 Score=22.81 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=23.7
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
...|++.+. -....+|||+|-+.|..=..|.+
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~Liq 130 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQ 130 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHH
Confidence 456778877 55788999999999975444443
No 265
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=49.26 E-value=74 Score=21.51 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=13.4
Q ss_pred CCceeEeecCCccHHHH
Q 047240 47 GLKSLVDVGGGTGTMAR 63 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~ 63 (71)
+.-+++|+|-|+|..+.
T Consensus 63 ~~~~iaDlGcs~G~ntl 79 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTI 79 (386)
T ss_pred cceeEEEecCCCCccHH
Confidence 45689999999996543
No 266
>PLN02537 diaminopimelate decarboxylase
Probab=48.80 E-value=9.3 Score=25.28 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=10.3
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-.++|||||-|.
T Consensus 222 ~~~idiGGGf~v 233 (410)
T PLN02537 222 LSYLNIGGGLGI 233 (410)
T ss_pred ccEEEcCCCccc
Confidence 589999999864
No 267
>PLN02439 arginine decarboxylase
Probab=48.79 E-value=9.7 Score=26.75 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=10.2
Q ss_pred CceeEeecCCcc
Q 047240 48 LKSLVDVGGGTG 59 (71)
Q Consensus 48 ~~~vvDvGGg~G 59 (71)
.-..+|||||-|
T Consensus 220 ~l~~lDIGGGlg 231 (559)
T PLN02439 220 PMRVIDIGGGLG 231 (559)
T ss_pred CCcEEEecCCcc
Confidence 358999999987
No 268
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=48.63 E-value=30 Score=23.97 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=27.1
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
+..++.+| ...++..++||-+|-|.++..+++.
T Consensus 195 r~~VEECD-~lQGFq~l~Did~GfgG~as~~le~ 227 (483)
T KOG2530|consen 195 RFYVEECD-TLQGFQLLSDIDDGFGGFASKLLEE 227 (483)
T ss_pred HHHHHhcc-cccceEEEEecCCCchhHHHHHHHH
Confidence 45677777 4678999999999999999888764
No 269
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=48.48 E-value=11 Score=24.27 Aligned_cols=11 Identities=55% Similarity=0.918 Sum_probs=9.3
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 148 ~~lVvDiGggt 158 (336)
T PRK13928 148 GNMVVDIGGGT 158 (336)
T ss_pred eEEEEEeCCCe
Confidence 46899999986
No 270
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=47.77 E-value=10 Score=27.01 Aligned_cols=12 Identities=58% Similarity=0.999 Sum_probs=10.3
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-.++|||||-|.
T Consensus 277 l~~LDIGGGlgV 288 (624)
T TIGR01273 277 ITYVDVGGGLGV 288 (624)
T ss_pred CCEEEeCCCcCC
Confidence 689999999873
No 271
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=46.88 E-value=35 Score=17.82 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=15.7
Q ss_pred hCCCceeEeecCCccH-HHHHHHHhc
Q 047240 45 FKGLKSLVDVGGGTGT-MARAIATGF 69 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~-~~~~l~~~~ 69 (71)
.++.+.|+=||+++|. ++.+|..+|
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCCCceEEEEecCCcccHHHHHHHHh
Confidence 3555778879999998 555666553
No 272
>PRK11678 putative chaperone; Provisional
Probab=46.49 E-value=12 Score=25.47 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.8
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 209 ~~vlV~D~GGGT 220 (450)
T PRK11678 209 KRVLVVDIGGGT 220 (450)
T ss_pred CeEEEEEeCCCe
Confidence 346899999987
No 273
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=46.28 E-value=9.4 Score=28.73 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=7.5
Q ss_pred eeEeecCCcc
Q 047240 50 SLVDVGGGTG 59 (71)
Q Consensus 50 ~vvDvGGg~G 59 (71)
-=||||||+=
T Consensus 569 ASIDIGGGTT 578 (1002)
T PF07520_consen 569 ASIDIGGGTT 578 (1002)
T ss_pred EEEecCCCcc
Confidence 3489999873
No 274
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=46.14 E-value=11 Score=25.19 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.9
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.+||||||-|.
T Consensus 204 ~~~~idiGGG~~~ 216 (423)
T cd06842 204 APRFIDIGGGFPV 216 (423)
T ss_pred CCCEEEeCCCcCC
Confidence 4689999999874
No 275
>PRK14011 prefoldin subunit alpha; Provisional
Probab=46.07 E-value=15 Score=21.33 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=7.4
Q ss_pred CceeEeecCC
Q 047240 48 LKSLVDVGGG 57 (71)
Q Consensus 48 ~~~vvDvGGg 57 (71)
...+||||.|
T Consensus 70 dkVlVdIGtG 79 (144)
T PRK14011 70 DKAILGVGSD 79 (144)
T ss_pred CeEEEEccCC
Confidence 3678888865
No 276
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=45.87 E-value=16 Score=23.86 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=8.7
Q ss_pred CCceeEeecCC
Q 047240 47 GLKSLVDVGGG 57 (71)
Q Consensus 47 ~~~~vvDvGGg 57 (71)
....||||||-
T Consensus 47 s~DIvvDVGg~ 57 (327)
T KOG2948|consen 47 SCDIVVDVGGV 57 (327)
T ss_pred hcCEEEecCcc
Confidence 35699999984
No 277
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=45.75 E-value=13 Score=22.89 Aligned_cols=11 Identities=64% Similarity=0.987 Sum_probs=9.1
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 109 ~~~vvDiGggt 119 (239)
T TIGR02529 109 NGAVVDVGGGT 119 (239)
T ss_pred CcEEEEeCCCc
Confidence 35999999975
No 278
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=45.72 E-value=18 Score=17.76 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=27.2
Q ss_pred ChhhhhhcCcchHHHHHHHHHh---cchhhHHHHHHhch
Q 047240 7 KFWDFVAAEPNLESIFYDAMIA---DSELITIVVIEDCK 42 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~---~~~~~~~~~~~~~d 42 (71)
++-.||-+||+........=++ .+....+.+++.|.
T Consensus 4 ~iV~YLv~nPevl~kl~~g~asLIGv~~~e~~aIi~~F~ 42 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEASLIGVDKDEQKAIIDAFK 42 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCeeEecCCHHHHHHHHHHHc
Confidence 3557899999998888777664 45556778888886
No 279
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=45.68 E-value=13 Score=23.74 Aligned_cols=10 Identities=60% Similarity=1.132 Sum_probs=8.7
Q ss_pred ceeEeecCCc
Q 047240 49 KSLVDVGGGT 58 (71)
Q Consensus 49 ~~vvDvGGg~ 58 (71)
..|||+|||+
T Consensus 150 ~lvvDiGggt 159 (334)
T PRK13927 150 SMVVDIGGGT 159 (334)
T ss_pred EEEEEeCCCe
Confidence 5899999986
No 280
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=45.66 E-value=27 Score=22.68 Aligned_cols=10 Identities=30% Similarity=1.019 Sum_probs=8.5
Q ss_pred CCceeEeecC
Q 047240 47 GLKSLVDVGG 56 (71)
Q Consensus 47 ~~~~vvDvGG 56 (71)
+..+|+||||
T Consensus 125 ~v~tIIDIGG 134 (293)
T TIGR03192 125 AVRTILDMGG 134 (293)
T ss_pred CCCEEEEeCC
Confidence 5789999997
No 281
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=45.57 E-value=10 Score=17.65 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=8.8
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
..-+-||+||+
T Consensus 21 aN~iRDvqGGt 31 (46)
T PF02402_consen 21 ANYIRDVQGGT 31 (46)
T ss_pred hcceecCCCce
Confidence 46788999985
No 282
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=45.56 E-value=74 Score=23.24 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=28.7
Q ss_pred hcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 28 ADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 28 ~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..+....+.++..+. - ...-.+=+|=|+|-+.+.+++.||.
T Consensus 306 TGAHYKlRsIL~~~~--i-~~~d~l~~GDGSGGita~lLR~~p~ 346 (675)
T PF14314_consen 306 TGAHYKLRSILKNLN--I-KYRDALCGGDGSGGITACLLRMNPT 346 (675)
T ss_pred ccchhhHHHHHHhcC--C-CcceeEEEecCchHHHHHHHHhCcc
Confidence 344556678888877 2 2233343677999999999999985
No 283
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=45.53 E-value=53 Score=21.54 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHHHHhcchh----hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 21 IFYDAMIADSEL----ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 21 ~F~~~M~~~~~~----~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.+..+|-..+.+ ....++...+ -....+||.-|-|+|.++-+|+++-
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV 127 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAV 127 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhh
Confidence 455566554443 2334556666 6677899999999999999999864
No 284
>PRK05354 arginine decarboxylase; Provisional
Probab=45.21 E-value=12 Score=26.77 Aligned_cols=12 Identities=50% Similarity=0.919 Sum_probs=10.2
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-..+|||||-|.
T Consensus 284 l~~LDIGGGlgV 295 (634)
T PRK05354 284 IQYLDVGGGLGV 295 (634)
T ss_pred CCEEEeCCCcCc
Confidence 579999999874
No 285
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=45.08 E-value=11 Score=26.05 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=8.8
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
..=+|||||+=.
T Consensus 145 V~NiDIGGGTtN 156 (473)
T PF06277_consen 145 VANIDIGGGTTN 156 (473)
T ss_pred EEEEEeCCCcee
Confidence 355799999743
No 286
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=45.06 E-value=15 Score=21.39 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.7
Q ss_pred eecCCccHHHHHHHH
Q 047240 53 DVGGGTGTMARAIAT 67 (71)
Q Consensus 53 DvGGg~G~~~~~l~~ 67 (71)
-||||+|..++.++-
T Consensus 77 ~iGgG~G~~~At~~G 91 (154)
T COG3133 77 TIGGGTGRSLATAAG 91 (154)
T ss_pred cccCCcchHHHHHHh
Confidence 388999998887654
No 287
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=45.01 E-value=46 Score=20.97 Aligned_cols=24 Identities=25% Similarity=0.147 Sum_probs=18.2
Q ss_pred hCCCceeEeecCCccHHHHHHHHh
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
-....+|+|-.-|+|.++.++.+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~ 67 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEY 67 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHH
T ss_pred ccccceeechhhhHHHHHHHHHHh
Confidence 345568999999999999988763
No 288
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=44.94 E-value=16 Score=24.95 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=9.6
Q ss_pred hCCCceeEeecC
Q 047240 45 FKGLKSLVDVGG 56 (71)
Q Consensus 45 ~~~~~~vvDvGG 56 (71)
+.+..+|+||||
T Consensus 265 ~P~vrTIIDIGG 276 (432)
T TIGR02259 265 YPGTRTVLDIGG 276 (432)
T ss_pred CCCCCEEEEeCC
Confidence 346789999998
No 289
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=44.44 E-value=46 Score=21.98 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=21.4
Q ss_pred hCCCceeEeecCCccH-HHHHHHHhcCC
Q 047240 45 FKGLKSLVDVGGGTGT-MARAIATGFLI 71 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~-~~~~l~~~~P~ 71 (71)
.-+.+.|+-+|=|.|+ .+..++-+||+
T Consensus 118 ~f~lk~vIg~GvGAGAyIL~rFAl~hp~ 145 (326)
T KOG2931|consen 118 HFGLKSVIGMGVGAGAYILARFALNHPE 145 (326)
T ss_pred hcCcceEEEecccccHHHHHHHHhcChh
Confidence 4467899999988988 56778888875
No 290
>PRK01203 prefoldin subunit alpha; Provisional
Probab=44.30 E-value=16 Score=20.86 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=8.3
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...+||||.|.
T Consensus 69 ~kVlVdIGTGy 79 (130)
T PRK01203 69 KDLIVPIGSGV 79 (130)
T ss_pred CeEEEEcCCCe
Confidence 36899999763
No 291
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=44.29 E-value=14 Score=23.56 Aligned_cols=11 Identities=55% Similarity=0.918 Sum_probs=9.0
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|||+|||+
T Consensus 153 ~~lVvDiG~gt 163 (335)
T PRK13930 153 GNMVVDIGGGT 163 (335)
T ss_pred ceEEEEeCCCe
Confidence 35999999975
No 292
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=44.23 E-value=13 Score=25.61 Aligned_cols=11 Identities=55% Similarity=0.824 Sum_probs=9.3
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|||+|||+
T Consensus 189 ~vlv~D~Gggt 199 (602)
T PF00012_consen 189 TVLVVDFGGGT 199 (602)
T ss_dssp EEEEEEEESSE
T ss_pred ceeccccccce
Confidence 56899999985
No 293
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=44.11 E-value=20 Score=19.40 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=13.5
Q ss_pred CCCceeEeecCCccHHHH
Q 047240 46 KGLKSLVDVGGGTGTMAR 63 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~ 63 (71)
.+.-.++|++||+-....
T Consensus 58 ~~vlil~Dl~ggsp~n~a 75 (116)
T PF03610_consen 58 DGVLILTDLGGGSPFNEA 75 (116)
T ss_dssp SEEEEEESSTTSHHHHHH
T ss_pred CcEEEEeeCCCCccchHH
Confidence 456799999998876444
No 294
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=43.64 E-value=11 Score=17.02 Aligned_cols=6 Identities=17% Similarity=-0.031 Sum_probs=2.4
Q ss_pred HHHhcC
Q 047240 65 IATGFL 70 (71)
Q Consensus 65 l~~~~P 70 (71)
|+++||
T Consensus 22 IL~k~P 27 (39)
T PF08557_consen 22 ILKKHP 27 (39)
T ss_pred HHHhCh
Confidence 344443
No 295
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=43.19 E-value=1e+02 Score=21.32 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=37.1
Q ss_pred cCcchHH---HHHHHHHhcchhhHHHHHHhchhhhCCCceeEeec---CCccHHHHHHHHh
Q 047240 14 AEPNLES---IFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVG---GGTGTMARAIATG 68 (71)
Q Consensus 14 ~~p~~~~---~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvG---Gg~G~~~~~l~~~ 68 (71)
+||.+++ .|..+......+.....++.|. +|-+...|||.. |++-.+.-+|+++
T Consensus 101 eD~~F~ks~~kfi~~I~~sealIg~E~~Rryg-GFYGpTcVvDFAliPGSTsNVVN~IL~~ 160 (499)
T PF09959_consen 101 EDPAFRKSVEKFIEAIGKSEALIGKESARRYG-GFYGPTCVVDFALIPGSTSNVVNQILKK 160 (499)
T ss_pred cCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhc-CccCCceeeeeeecCCchHHHHHHHHHh
Confidence 3565544 4555555555566778888887 588999999976 6666666666654
No 296
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=43.10 E-value=15 Score=24.97 Aligned_cols=11 Identities=55% Similarity=0.975 Sum_probs=9.4
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...+||+|||+
T Consensus 204 Gv~lIDiG~GT 214 (418)
T COG0849 204 GVALIDIGGGT 214 (418)
T ss_pred CeEEEEeCCCc
Confidence 46999999986
No 297
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=42.30 E-value=14 Score=26.07 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=8.9
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 202 ~vlV~DlGGGT 212 (616)
T PRK05183 202 VIAVYDLGGGT 212 (616)
T ss_pred EEEEEECCCCe
Confidence 35799999985
No 298
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=42.11 E-value=16 Score=23.92 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=8.9
Q ss_pred CCCceeEeecC
Q 047240 46 KGLKSLVDVGG 56 (71)
Q Consensus 46 ~~~~~vvDvGG 56 (71)
.....||||||
T Consensus 42 ~~cDiVvDVGg 52 (318)
T PF03690_consen 42 EKCDIVVDVGG 52 (318)
T ss_pred ccCCEEEecCC
Confidence 44569999998
No 299
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=42.08 E-value=83 Score=20.54 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=27.5
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
...+++... .....++||+==|.|..+.+|+++.|
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~ 43 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG 43 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC
Confidence 356666665 45567999999999999999998876
No 300
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=41.66 E-value=15 Score=25.85 Aligned_cols=11 Identities=45% Similarity=0.948 Sum_probs=9.1
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 182 ~vlV~DlGgGT 192 (599)
T TIGR01991 182 IYAVYDLGGGT 192 (599)
T ss_pred EEEEEEcCCCe
Confidence 46899999985
No 301
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=41.31 E-value=80 Score=20.53 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=29.2
Q ss_pred CChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCcc
Q 047240 6 KKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTG 59 (71)
Q Consensus 6 ~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G 59 (71)
++.++|+..+|+..+-+.+...- ...|+..|.. -...-..|-|| ++|
T Consensus 206 ~~V~dYv~~~~e~~ef~~~l~~~-----l~~~LP~y~~-egks~lTIaIG-CTG 252 (286)
T COG1660 206 KPVADYVMSQPEVEEFYEKLRDL-----LEFWLPRYEK-EGKSYLTIAIG-CTG 252 (286)
T ss_pred hhHHHHHHcChHHHHHHHHHHHH-----HHHHhHHHHh-cCCeEEEEEEc-cCC
Confidence 67899999999877665555442 3456777761 22334555565 454
No 302
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=40.83 E-value=42 Score=21.03 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.2
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+.+.++.||-+.|.-+..+++.-|
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~ 102 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALP 102 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCC
Confidence 45678999999999999998888765
No 303
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=40.70 E-value=30 Score=21.70 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.5
Q ss_pred CceeEeecCCccHHHHHHHHhcCC
Q 047240 48 LKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+.|||--++.+...+++.+|.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~ 40 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPA 40 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCc
Confidence 344999999999999999998873
No 304
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=40.49 E-value=15 Score=25.54 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=9.7
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 183 ~~vlV~D~Gggt 194 (595)
T TIGR02350 183 EKILVFDLGGGT 194 (595)
T ss_pred cEEEEEECCCCe
Confidence 456899999985
No 305
>PF05526 R_equi_Vir: Rhodococcus equi virulence-associated protein; InterPro: IPR008810 This family consists of several virulence-associated proteins from Corynebacterium equii (Rhodococcus equi). R. equi is an important pulmonary pathogen of foals and is increasingly isolated from pneumonic infections and other infections in Homo sapiens immunodeficiency virus-infected patients. Isolates from foals possess a large virulence plasmid, varying in size from 80 to 90 kb. Isolates lacking the plasmid are avirulent to foals. Little is known about the function of the plasmid apart from its encoding a virulence associated surface protein [].
Probab=40.48 E-value=10 Score=22.74 Aligned_cols=15 Identities=40% Similarity=0.962 Sum_probs=12.6
Q ss_pred CCCceeEeecCCccH
Q 047240 46 KGLKSLVDVGGGTGT 60 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~ 60 (71)
.+..+|+-||||+|.
T Consensus 161 G~vstv~GigGGtG~ 175 (177)
T PF05526_consen 161 GGVSTVSGIGGGTGS 175 (177)
T ss_pred CCcceeeEecccccc
Confidence 346899999999985
No 306
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=39.98 E-value=16 Score=21.38 Aligned_cols=10 Identities=60% Similarity=0.853 Sum_probs=7.9
Q ss_pred CceeEeecCC
Q 047240 48 LKSLVDVGGG 57 (71)
Q Consensus 48 ~~~vvDvGGg 57 (71)
.+.+||||-|
T Consensus 83 ~k~lVDIGTG 92 (153)
T KOG3048|consen 83 SKFLVDIGTG 92 (153)
T ss_pred cceeEeccCc
Confidence 4799999954
No 307
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=39.91 E-value=16 Score=25.72 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=9.7
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 185 ~~vlV~D~GggT 196 (627)
T PRK00290 185 EKILVYDLGGGT 196 (627)
T ss_pred CEEEEEECCCCe
Confidence 457899999985
No 308
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=39.81 E-value=33 Score=21.76 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHhchhhhCCCceeEeecCCc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGT 58 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~ 58 (71)
.+.+.+.|..+-.+..+++|||-|.
T Consensus 43 L~~l~~~f~~g~~~g~~llDiGsGP 67 (256)
T PF01234_consen 43 LKNLHETFSSGGVKGETLLDIGSGP 67 (256)
T ss_dssp HHHHHHHHHTSSS-EEEEEEES-TT
T ss_pred HHHHHHHhCccCcCCCEEEEeCCCc
Confidence 3445555551122357999999776
No 309
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=39.72 E-value=19 Score=24.04 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=32.5
Q ss_pred ChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchh----hhCCCc----eeEeecCCccHHHHHHHHhcC
Q 047240 7 KFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKE----VFKGLK----SLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~----~~~~~~----~vvDvGGg~G~~~~~l~~~~P 70 (71)
+.+-|+-.|...+..|...-.+.++ +-.-||. .-...+ .=|-||||.|-++-.++..|-
T Consensus 230 DP~c~FiDDE~S~~LFLGYaVAa~R-----lk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fg 296 (443)
T COG3048 230 DPNCFFIDDENSRTLFLGYAVAAQR-----LKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFG 296 (443)
T ss_pred CCceEEecccchhhhhhhHHHHHHH-----HHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhc
Confidence 3444454555556666655443333 3333330 011223 335689999999998887763
No 310
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=39.67 E-value=16 Score=23.70 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=10.7
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
...++|+|||.|.
T Consensus 209 ~~~~idiGGG~~~ 221 (382)
T cd06839 209 PLEFLDLGGGFGI 221 (382)
T ss_pred CCCEEEecCcccc
Confidence 4689999999874
No 311
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=39.62 E-value=68 Score=21.01 Aligned_cols=36 Identities=25% Similarity=0.097 Sum_probs=25.3
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
...+++.+. .....++||+==|.|-.+.+|++++|+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~ 44 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN 44 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC
Confidence 456667666 566789999998899999999999874
No 312
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=38.85 E-value=27 Score=24.17 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=18.5
Q ss_pred CCceeEeecCCccHHH-HHHHHhcCC
Q 047240 47 GLKSLVDVGGGTGTMA-RAIATGFLI 71 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~-~~l~~~~P~ 71 (71)
...-||=+||+.|-++ +-+.-+||+
T Consensus 165 ~~~pvIafGGSYGGMLaAWfRlKYPH 190 (492)
T KOG2183|consen 165 EASPVIAFGGSYGGMLAAWFRLKYPH 190 (492)
T ss_pred ccCcEEEecCchhhHHHHHHHhcChh
Confidence 4566777999998855 456778885
No 313
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=38.73 E-value=45 Score=20.25 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.0
Q ss_pred CCceeEeecCCccHHHHHHHHhc
Q 047240 47 GLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...+++|+=+|+|.+..+-+++.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG 65 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG 65 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC
Confidence 45899999999999999988764
No 314
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=38.13 E-value=18 Score=23.93 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=9.8
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-.++|+|||-|.
T Consensus 229 l~~idiGGG~~~ 240 (417)
T TIGR01048 229 LEFLDLGGGLGI 240 (417)
T ss_pred ccEEEeCCcccc
Confidence 479999999754
No 315
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=37.99 E-value=19 Score=23.32 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.1
Q ss_pred CceeEeecCCccHH
Q 047240 48 LKSLVDVGGGTGTM 61 (71)
Q Consensus 48 ~~~vvDvGGg~G~~ 61 (71)
.-.++|+|||-|.-
T Consensus 192 ~~~~id~GGG~~~~ 205 (362)
T cd00622 192 KLKLLDIGGGFPGS 205 (362)
T ss_pred CcCEEEeCCCcCcc
Confidence 46799999998654
No 316
>COG3326 Predicted membrane protein [Function unknown]
Probab=37.72 E-value=22 Score=19.23 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=12.6
Q ss_pred ecCCccHHHHHHHHhc
Q 047240 54 VGGGTGTMARAIATGF 69 (71)
Q Consensus 54 vGGg~G~~~~~l~~~~ 69 (71)
+||+.|.......-+|
T Consensus 48 lGG~~Ga~~a~~~frH 63 (94)
T COG3326 48 LGGWFGAWLAMQLFRH 63 (94)
T ss_pred HcchHHHHHHHHHHHh
Confidence 6899999887776554
No 317
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=37.67 E-value=18 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.7
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.+||||||-|.
T Consensus 218 ~~~~IdiGGGf~~ 230 (420)
T PRK11165 218 DIEAISAGGGLSI 230 (420)
T ss_pred CCcEEEeCCCccc
Confidence 4689999999873
No 318
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=37.65 E-value=20 Score=23.95 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=9.8
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|||+|||+
T Consensus 204 ~gv~vvDiGggt 215 (420)
T PRK09472 204 LGVCVVDIGGGT 215 (420)
T ss_pred cCeEEEEeCCCc
Confidence 357899999986
No 319
>PRK15197 secreted effector protein PipB; Provisional
Probab=37.42 E-value=28 Score=22.52 Aligned_cols=41 Identities=20% Similarity=0.034 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCc
Q 047240 16 PNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGT 58 (71)
Q Consensus 16 p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~ 58 (71)
.+-.+.|...|...+......--+.|+ ......++||.|..
T Consensus 50 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~g~~ 90 (291)
T PRK15197 50 RSNERCFREVIGKLTTSLLYVNKDAFF--DGNKIFLEDVNGCT 90 (291)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCC--ChhheEEeecCCeE
Confidence 334457888877766544333333444 22334558888854
No 320
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=37.36 E-value=47 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
...|++.|+. |.+....+|+=|..|..+..+..+|
T Consensus 293 i~RI~khfp~-F~gAvia~n~~G~ygaaC~g~~~~F 327 (349)
T KOG1593|consen 293 ISRILKHFPD-FSGAVIAANVLGSYGAACYGINNKF 327 (349)
T ss_pred HHHHHHhCcc-ceeeEEEEeccCchhhhhcccccce
Confidence 4578889984 9999999999999999887765444
No 321
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=37.21 E-value=21 Score=24.75 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=11.3
Q ss_pred hCCCceeEeecCCc
Q 047240 45 FKGLKSLVDVGGGT 58 (71)
Q Consensus 45 ~~~~~~vvDvGGg~ 58 (71)
......+||||||+
T Consensus 144 ke~gVa~IDIGgGT 157 (475)
T PRK10719 144 RNTRVLNIDIGGGT 157 (475)
T ss_pred ccCceEEEEeCCCc
Confidence 44568999999986
No 322
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=37.06 E-value=71 Score=17.22 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=26.8
Q ss_pred hHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 33 ITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 33 ~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
....+++.|| -..+..|=|=|=..-..=.+++++||+
T Consensus 54 ~i~~i~~~fP--~~kfiLIGDsgq~DpeiY~~ia~~~P~ 90 (100)
T PF09949_consen 54 NIERILRDFP--ERKFILIGDSGQHDPEIYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHCC--CCcEEEEeeCCCcCHHHHHHHHHHCCC
Confidence 3567778887 556666667776666777888999985
No 323
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=36.98 E-value=21 Score=23.05 Aligned_cols=11 Identities=55% Similarity=1.026 Sum_probs=9.2
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|||+|||+
T Consensus 151 ~~lvvDiG~gt 161 (335)
T PRK13929 151 ANVVVDIGGGT 161 (335)
T ss_pred eEEEEEeCCCe
Confidence 46999999985
No 324
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=36.95 E-value=31 Score=24.73 Aligned_cols=12 Identities=50% Similarity=0.913 Sum_probs=9.6
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 212 ~~vlV~DlGGGT 223 (657)
T PTZ00186 212 SLIAVYDLGGGT 223 (657)
T ss_pred CEEEEEECCCCe
Confidence 356899999986
No 325
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=36.64 E-value=20 Score=23.21 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.8
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|+|||.|.
T Consensus 206 ~~~~idiGGG~~~ 218 (373)
T cd06828 206 DLEFLDLGGGLGI 218 (373)
T ss_pred CCCEEEeCCCCCc
Confidence 4589999999875
No 326
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=36.32 E-value=35 Score=21.30 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=14.8
Q ss_pred ceeEeecCCccHHHHHHHH
Q 047240 49 KSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~ 67 (71)
.++.|+|-|+|.++.-.++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~ 52 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH 52 (252)
T ss_pred hceeeccCCcchHHHHHHh
Confidence 4789999999998765443
No 327
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=36.28 E-value=21 Score=22.88 Aligned_cols=11 Identities=55% Similarity=0.897 Sum_probs=9.0
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|||+|||+
T Consensus 151 ~~lVvDiG~gt 161 (333)
T TIGR00904 151 GSMVVDIGGGT 161 (333)
T ss_pred eEEEEEcCCCe
Confidence 46899999975
No 328
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=36.22 E-value=38 Score=23.00 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=9.1
Q ss_pred CCCceeEeecC
Q 047240 46 KGLKSLVDVGG 56 (71)
Q Consensus 46 ~~~~~vvDvGG 56 (71)
....+|+||||
T Consensus 228 p~~dtIiDIGG 238 (396)
T COG1924 228 PDVDTVIDIGG 238 (396)
T ss_pred CCCcEEEEecC
Confidence 45679999998
No 329
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=36.22 E-value=17 Score=26.75 Aligned_cols=11 Identities=55% Similarity=0.951 Sum_probs=8.1
Q ss_pred eeEeecCCccH
Q 047240 50 SLVDVGGGTGT 60 (71)
Q Consensus 50 ~vvDvGGg~G~ 60 (71)
--||||||+=-
T Consensus 576 AsvDiGGGTTD 586 (1014)
T COG4457 576 ASVDIGGGTTD 586 (1014)
T ss_pred EEEecCCCcce
Confidence 45899998743
No 330
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=35.95 E-value=25 Score=15.58 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=13.2
Q ss_pred eeEeec-CCccHHHHHHHHhcC
Q 047240 50 SLVDVG-GGTGTMARAIATGFL 70 (71)
Q Consensus 50 ~vvDvG-Gg~G~~~~~l~~~~P 70 (71)
.++..+ +|+..+...|.+++|
T Consensus 24 ~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 24 KVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp EE-----SSTHHHHHHHHHTTH
T ss_pred eEEeeCCCcHHHHHHhhhhhCc
Confidence 334443 788889988888776
No 331
>PF08925 DUF1907: Domain of Unknown Function (DUF1907); InterPro: IPR015021 The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxH motif that coordinates a zinc ion, and an acetate anion at a site that likely supports the enzymatic activity of an ester hydrolase []. ; GO: 0005634 nucleus; PDB: 1XCR_B.
Probab=35.88 E-value=23 Score=22.95 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=8.8
Q ss_pred hCCCceeEeecCCcc
Q 047240 45 FKGLKSLVDVGGGTG 59 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G 59 (71)
+.+..+|+|||| .+
T Consensus 35 L~G~~~i~eVGG-~p 48 (284)
T PF08925_consen 35 LCGNPRIAEVGG-PP 48 (284)
T ss_dssp -BSS-EEEEEE--GG
T ss_pred CCCCCeEEEecC-Cc
Confidence 456789999997 44
No 332
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=35.79 E-value=20 Score=23.08 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=11.0
Q ss_pred CceeEeecCCccHH
Q 047240 48 LKSLVDVGGGTGTM 61 (71)
Q Consensus 48 ~~~vvDvGGg~G~~ 61 (71)
.-.+||+|||.+..
T Consensus 201 ~~~~id~GGG~~~~ 214 (368)
T cd06810 201 PLEMLDLGGGLGIP 214 (368)
T ss_pred CCCEEEeCCCcccc
Confidence 35799999998653
No 333
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=35.78 E-value=21 Score=25.17 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=8.9
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 194 ~vlV~DlGGGT 204 (595)
T PRK01433 194 CYLVYDLGGGT 204 (595)
T ss_pred EEEEEECCCCc
Confidence 35799999985
No 334
>CHL00094 dnaK heat shock protein 70
Probab=35.72 E-value=21 Score=25.21 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=9.6
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 187 ~~vlV~DlGgGT 198 (621)
T CHL00094 187 ETILVFDLGGGT 198 (621)
T ss_pred CEEEEEEcCCCe
Confidence 346899999986
No 335
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=35.45 E-value=67 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=14.9
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
...+|+|+|.|.|..+.--.++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~ 83 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA 83 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT
T ss_pred CCCeEEEecCCCchhHHHHHhc
Confidence 5689999999988876654443
No 336
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.44 E-value=68 Score=21.35 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=19.4
Q ss_pred hCCCceeEeecCCccHHHHHHHH
Q 047240 45 FKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
+.....+|||=||+=.++++++-
T Consensus 68 ~~~~~v~vDiTGGTK~Msaglal 90 (379)
T PF09670_consen 68 FPGHEVAVDITGGTKSMSAGLAL 90 (379)
T ss_pred CCCCeEEEECCCCHHHHHHHHHH
Confidence 67789999999999888887754
No 337
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=35.40 E-value=15 Score=17.81 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=10.6
Q ss_pred ecCCccHHHHHHHHhc
Q 047240 54 VGGGTGTMARAIATGF 69 (71)
Q Consensus 54 vGGg~G~~~~~l~~~~ 69 (71)
+||..|.++....-+|
T Consensus 33 ~GG~~Ga~~~m~~frH 48 (55)
T PF06961_consen 33 LGGWPGALLGMYLFRH 48 (55)
T ss_pred HHhHHHHHHHHHHhcc
Confidence 6777888776655443
No 338
>PRK13410 molecular chaperone DnaK; Provisional
Probab=35.36 E-value=33 Score=24.62 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=9.6
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 187 ~~vlV~DlGgGT 198 (668)
T PRK13410 187 QTVLVFDLGGGT 198 (668)
T ss_pred CEEEEEECCCCe
Confidence 346899999986
No 339
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=35.24 E-value=32 Score=20.36 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.0
Q ss_pred cCCccHHHHHHHHhcC
Q 047240 55 GGGTGTMARAIATGFL 70 (71)
Q Consensus 55 GGg~G~~~~~l~~~~P 70 (71)
|.|-|+++..|++++|
T Consensus 10 GaGK~T~A~~La~~~~ 25 (178)
T COG0563 10 GAGKSTLAKKLAKKLG 25 (178)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7789999999999875
No 340
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=35.19 E-value=63 Score=21.45 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred HHHhchhhhCCCceeEeecCCccHHHHHHHHhc
Q 047240 37 VIEDCKEVFKGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 37 ~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
+++.|.-.-....-+|-|| |.|.+.+..+.++
T Consensus 73 IV~dYErIR~~aVAiVGvG-GVGSV~AeMLTRC 104 (422)
T KOG2336|consen 73 IVDDYERIREFAVAIVGVG-GVGSVTAEMLTRC 104 (422)
T ss_pred chhhHHHHhhheeEEEecC-chhHHHHHHHHhc
Confidence 4555552222345677777 5999999988765
No 341
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=34.87 E-value=43 Score=15.39 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHhcCC
Q 047240 56 GGTGTMARAIATGFLI 71 (71)
Q Consensus 56 Gg~G~~~~~l~~~~P~ 71 (71)
+|++++...+...+|.
T Consensus 34 ~gTs~L~rHl~~~h~~ 49 (50)
T smart00614 34 GGTSNLRRHLRRKHPA 49 (50)
T ss_pred CCcHHHHHHHHhHCcC
Confidence 7899999999988874
No 342
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=33.42 E-value=30 Score=18.95 Aligned_cols=10 Identities=50% Similarity=0.830 Sum_probs=7.1
Q ss_pred ceeEeecCCc
Q 047240 49 KSLVDVGGGT 58 (71)
Q Consensus 49 ~~vvDvGGg~ 58 (71)
..+||||+|.
T Consensus 69 ~v~v~iG~g~ 78 (126)
T TIGR00293 69 KVLVSIGSGY 78 (126)
T ss_pred EEEEEcCCCE
Confidence 5778888763
No 343
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=33.38 E-value=38 Score=20.58 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=17.8
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+|+|.-.|.|.++..+++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~ 122 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKH 122 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHH
T ss_pred CcceEEEEccCCccHHHHHHhhh
Confidence 45689999999999999999873
No 344
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=32.97 E-value=26 Score=23.52 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=10.7
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-..||+|||.|.
T Consensus 229 ~l~~inlGGG~gi 241 (394)
T COG0019 229 QLEWLNLGGGLGI 241 (394)
T ss_pred CceEEEecCCcCc
Confidence 3589999999874
No 345
>PRK13411 molecular chaperone DnaK; Provisional
Probab=32.90 E-value=24 Score=25.08 Aligned_cols=11 Identities=55% Similarity=0.924 Sum_probs=9.0
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 187 ~vlV~DlGgGT 197 (653)
T PRK13411 187 LILVFDLGGGT 197 (653)
T ss_pred EEEEEEcCCCe
Confidence 46899999985
No 346
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=32.51 E-value=24 Score=25.14 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=9.3
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
...|+|+|||+
T Consensus 227 ~vlV~DlGgGT 237 (663)
T PTZ00400 227 TIAVYDLGGGT 237 (663)
T ss_pred EEEEEeCCCCe
Confidence 46899999986
No 347
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=32.50 E-value=25 Score=23.13 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=9.2
Q ss_pred ceeEeecCCcc
Q 047240 49 KSLVDVGGGTG 59 (71)
Q Consensus 49 ~~vvDvGGg~G 59 (71)
..++|+|||-|
T Consensus 226 ~~~idiGGG~~ 236 (398)
T TIGR03099 226 VRVINIGGGFG 236 (398)
T ss_pred CCEEEeCCccc
Confidence 35999999986
No 348
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=32.25 E-value=1.6e+02 Score=20.92 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHhchhhhCCCceeEeecCC-ccHHHHHHHHhcCC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGG-TGTMARAIATGFLI 71 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg-~G~~~~~l~~~~P~ 71 (71)
..+-..|. ++.....|=.||+ .|.+++-+.++||+
T Consensus 160 ~~~n~k~n--~~~~~~WitFGgSYsGsLsAW~R~~yPe 195 (514)
T KOG2182|consen 160 KAMNAKFN--FSDDSKWITFGGSYSGSLSAWFREKYPE 195 (514)
T ss_pred HHHHhhcC--CCCCCCeEEECCCchhHHHHHHHHhCch
Confidence 34444555 5555677779997 58899999999996
No 349
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=32.20 E-value=71 Score=17.65 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=14.9
Q ss_pred CChhhhhhcCcchHHHHH
Q 047240 6 KKFWDFVAAEPNLESIFY 23 (71)
Q Consensus 6 ~~~f~~~~~~p~~~~~F~ 23 (71)
..+|+++.++|+....|.
T Consensus 36 ~~FY~~l~~~p~~~~~~~ 53 (147)
T cd01068 36 DRFYDHLRRTPETAAFLG 53 (147)
T ss_pred HHHHHHHhcChHHHHHhC
Confidence 368899999999888885
No 350
>PLN03184 chloroplast Hsp70; Provisional
Probab=32.11 E-value=43 Score=24.02 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=9.5
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 224 ~~vlV~DlGgGT 235 (673)
T PLN03184 224 ETILVFDLGGGT 235 (673)
T ss_pred CEEEEEECCCCe
Confidence 356899999985
No 351
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=31.99 E-value=95 Score=20.30 Aligned_cols=23 Identities=13% Similarity=0.123 Sum_probs=16.4
Q ss_pred hCCCceeEeecCCccHHHHHHHH
Q 047240 45 FKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
..+.-+|+|+|-++|..+..++.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHH
T ss_pred CCCceEEEecCCCCCccHHHHHH
Confidence 45667999999999998776654
No 352
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=31.95 E-value=52 Score=20.94 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHhcchh--hHHHHHHhchhhhCC---CceeEeecCCccHHHH
Q 047240 24 DAMIADSEL--ITIVVIEDCKEVFKG---LKSLVDVGGGTGTMAR 63 (71)
Q Consensus 24 ~~M~~~~~~--~~~~~~~~~d~~~~~---~~~vvDvGGg~G~~~~ 63 (71)
+.|+.+.+. -.+.+-+.|+..|.. ..+|+|||-|---++.
T Consensus 77 ~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlal 121 (251)
T PF07091_consen 77 RLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLAL 121 (251)
T ss_dssp HHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHH
T ss_pred HHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceeh
Confidence 456654332 233444555543443 6899999987654443
No 353
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=31.82 E-value=53 Score=21.07 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.7
Q ss_pred eeEeecCCccHHHHHHHHhcCC
Q 047240 50 SLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 50 ~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+++.||-|.|...--|++..|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n 95 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN 95 (264)
T ss_pred hheeeccCCCcccchhhhcCCC
Confidence 8999999999999999888774
No 354
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=31.79 E-value=1.2e+02 Score=18.27 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHhcchhhHHHHHHhchhhhCCCceeEeec----CCccHHHHHHHHh
Q 047240 25 AMIADSELITIVVIEDCKEVFKGLKSLVDVG----GGTGTMARAIATG 68 (71)
Q Consensus 25 ~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvG----Gg~G~~~~~l~~~ 68 (71)
.|........+.+.+.|+ . ..+.+|=+| ||.|..+++.+..
T Consensus 26 LME~Ag~~va~~i~~~~~--~-~~~v~vl~G~GNNGGDGlv~AR~L~~ 70 (205)
T TIGR00197 26 LMENAGKAVAQAVLQAFP--L-AGHVIIFCGPGNNGGDGFVVARHLKG 70 (205)
T ss_pred HHHHHHHHHHHHHHHHcC--C-CCeEEEEECCCCCccHHHHHHHHHHh
Confidence 455444444555556665 2 223333344 4677766666654
No 355
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=31.34 E-value=25 Score=24.17 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=9.2
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
.-++|+|||+=+
T Consensus 215 vgv~DLGGGSTQ 226 (453)
T KOG1385|consen 215 VGVVDLGGGSTQ 226 (453)
T ss_pred eEEEEcCCceEE
Confidence 468999998643
No 356
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=31.22 E-value=37 Score=21.14 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=11.8
Q ss_pred hCCCceeEeecCCcc
Q 047240 45 FKGLKSLVDVGGGTG 59 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G 59 (71)
......++||||++.
T Consensus 34 ~~~GAdiIDvG~~st 48 (258)
T cd00423 34 VEEGADIIDIGGEST 48 (258)
T ss_pred HHCCCCEEEECCCcC
Confidence 345689999998775
No 357
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=31.19 E-value=1.2e+02 Score=22.03 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.6
Q ss_pred hHHHHHHhchhhh-CCCceeEeecCCccHHHHHHHH
Q 047240 33 ITIVVIEDCKEVF-KGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 33 ~~~~~~~~~d~~~-~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
.+..++..-. | .+...|+|-.-|+|+++++.+.
T Consensus 177 lAaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 177 LAAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred HHHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHH
Confidence 3445555555 5 4568999999999999988765
No 358
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.11 E-value=32 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.529 Sum_probs=24.4
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHHHHh
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
++-+.|+ .|.+..++||+.-..|.-+.-+.++
T Consensus 31 qideef~-i~~gv~rvVDLCAAPGSWSQvlSrk 62 (294)
T KOG1099|consen 31 QIDEEFQ-IFEGVKRVVDLCAAPGSWSQVLSRK 62 (294)
T ss_pred hhhhhhh-HHhhhhHHhhhhcCCCcHHHHHHHH
Confidence 4446666 5788999999999999887766554
No 359
>PHA02518 ParA-like protein; Provisional
Probab=31.01 E-value=63 Score=18.78 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=16.2
Q ss_pred ceeEeecCCccHHHHHHHHh
Q 047240 49 KSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~ 68 (71)
-.|+|++|+.+.....++..
T Consensus 79 ~viiD~p~~~~~~~~~~l~~ 98 (211)
T PHA02518 79 YVVVDGAPQDSELARAALRI 98 (211)
T ss_pred EEEEeCCCCccHHHHHHHHH
Confidence 58999999988887776654
No 360
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=30.91 E-value=35 Score=18.96 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=16.0
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|.-++++.+++|.+-|..++.
T Consensus 81 y~m~s~~~WdRFMRFMeRYA~ 101 (108)
T PF03912_consen 81 YIMKSEEEWDRFMRFMERYAE 101 (108)
T ss_dssp EEE-SSHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 334688999999999987654
No 361
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=30.90 E-value=27 Score=22.95 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=8.4
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
.--.++|+|||+
T Consensus 134 ~PlaIlDmG~GS 145 (332)
T PF08841_consen 134 KPLAILDMGGGS 145 (332)
T ss_dssp SSEEEEEE-SSE
T ss_pred CCeEEEecCCCc
Confidence 345899999985
No 362
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.52 E-value=1.2e+02 Score=19.17 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.0
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.-+.+..+|||.=+|.-+.+.+.+-|+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~ 97 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPE 97 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCC
Confidence 456789999999999999998888774
No 363
>PRK06153 hypothetical protein; Provisional
Probab=30.48 E-value=64 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=10.6
Q ss_pred ec-CCccHHHHHHHHhc
Q 047240 54 VG-GGTGTMARAIATGF 69 (71)
Q Consensus 54 vG-Gg~G~~~~~l~~~~ 69 (71)
|| ||.|..+...+.+-
T Consensus 182 VG~GG~GS~Va~~LAR~ 198 (393)
T PRK06153 182 IGLGGTGSYILDLVAKT 198 (393)
T ss_pred EcCCccHHHHHHHHHHc
Confidence 44 57888777766553
No 364
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=30.35 E-value=43 Score=21.37 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=17.4
Q ss_pred HHHHhchhhhCC--CceeEeecCCccHHHHHH
Q 047240 36 VVIEDCKEVFKG--LKSLVDVGGGTGTMARAI 65 (71)
Q Consensus 36 ~~~~~~d~~~~~--~~~vvDvGGg~G~~~~~l 65 (71)
.++..|- -.+ .-+|||++||.+.....+
T Consensus 47 ~~A~~~~--~~Ga~~lHvVDLdgg~~~n~~~i 76 (262)
T PLN02446 47 EFAEMYK--RDGLTGGHVIMLGADDASLAAAL 76 (262)
T ss_pred HHHHHHH--HCCCCEEEEEECCCCCcccHHHH
Confidence 3455554 233 369999999777654333
No 365
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=29.97 E-value=33 Score=22.36 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=10.3
Q ss_pred hCCCceeEeecCCc
Q 047240 45 FKGLKSLVDVGGGT 58 (71)
Q Consensus 45 ~~~~~~vvDvGGg~ 58 (71)
+.....|+||||-.
T Consensus 45 l~s~div~DVGg~y 58 (306)
T COG4286 45 LDSCDIVYDVGGVY 58 (306)
T ss_pred hhcCCEEEecCccc
Confidence 34567999999843
No 366
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=29.87 E-value=33 Score=19.17 Aligned_cols=21 Identities=5% Similarity=-0.115 Sum_probs=16.6
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|.-++++..++|.+.|..++.
T Consensus 88 y~m~s~~~WdRFMRFMeRYA~ 108 (113)
T PRK13610 88 YNWNSEEAFERFMRFASRYAN 108 (113)
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 445688999999999987654
No 367
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=29.62 E-value=39 Score=15.02 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=5.0
Q ss_pred HHHHHHHhcC
Q 047240 61 MARAIATGFL 70 (71)
Q Consensus 61 ~~~~l~~~~P 70 (71)
++..++++||
T Consensus 18 lL~~l~~~HP 27 (38)
T PF14483_consen 18 LLQSLCERHP 27 (38)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCh
Confidence 3445555555
No 368
>PF13941 MutL: MutL protein
Probab=29.47 E-value=31 Score=23.81 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=9.6
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
+.-.+|||||.+
T Consensus 248 g~llvVDIGGAT 259 (457)
T PF13941_consen 248 GDLLVVDIGGAT 259 (457)
T ss_pred CCEEEEEccCcc
Confidence 457999999854
No 369
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=29.40 E-value=1.4e+02 Score=18.60 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=12.2
Q ss_pred CCCceeEeecCCccHHHHHHH
Q 047240 46 KGLKSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~ 66 (71)
.....+| ||||..-+++++.
T Consensus 20 ~~~DVvI-VGgGpAGL~aA~~ 39 (254)
T TIGR00292 20 AESDVII-VGAGPSGLTAAYY 39 (254)
T ss_pred cCCCEEE-ECCCHHHHHHHHH
Confidence 3445555 8888776655543
No 370
>PLN02256 arogenate dehydrogenase
Probab=29.40 E-value=1.5e+02 Score=19.14 Aligned_cols=26 Identities=15% Similarity=-0.027 Sum_probs=19.9
Q ss_pred hCCCceeEeecCCccHHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
+.....|+||+..-|....++.+..|
T Consensus 117 l~~~~iviDv~SvK~~~~~~~~~~l~ 142 (304)
T PLN02256 117 LKRSTLFVDVLSVKEFPKNLLLQVLP 142 (304)
T ss_pred cCCCCEEEecCCchHHHHHHHHHhCC
Confidence 34567999999987888887776554
No 371
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=29.35 E-value=34 Score=22.29 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=9.7
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 196 ~~~~vvDiG~gt 207 (371)
T TIGR01174 196 LGVCLIDIGGGT 207 (371)
T ss_pred CCEEEEEeCCCc
Confidence 346899999976
No 372
>PF02718 Herpes_UL31: Herpesvirus UL31-like protein; InterPro: IPR021152 This is a family of Herpesvirus proteins, belong to the UL31 family, which including UL31, UL53, and the product of ORF69 in some strains. The proteins in this family have no known function.
Probab=29.34 E-value=36 Score=21.76 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.6
Q ss_pred CChhhhhhcCcchHHHHHHHHHh
Q 047240 6 KKFWDFVAAEPNLESIFYDAMIA 28 (71)
Q Consensus 6 ~~~f~~~~~~p~~~~~F~~~M~~ 28 (71)
..+|+++.++|+....|.+-|..
T Consensus 28 ~~fF~~~~~~pele~~~LR~M~~ 50 (258)
T PF02718_consen 28 RDFFDVISESPELELDFLREMKV 50 (258)
T ss_pred HHHHHHHHhCchHHHHHHHhccC
Confidence 36899999999999999999984
No 373
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.16 E-value=34 Score=24.12 Aligned_cols=24 Identities=46% Similarity=0.632 Sum_probs=20.1
Q ss_pred hCCCceeEeecCCccHHHHHHHHh
Q 047240 45 FKGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 45 ~~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
....+.++||--|+|.+..++++.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~ 404 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG 404 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc
Confidence 345689999999999999888765
No 374
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=28.74 E-value=1.2e+02 Score=17.29 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=22.1
Q ss_pred hhhhhh-cCcchHHHHHHHHHhcchhhHHHHHHh
Q 047240 8 FWDFVA-AEPNLESIFYDAMIADSELITIVVIED 40 (71)
Q Consensus 8 ~f~~~~-~~p~~~~~F~~~M~~~~~~~~~~~~~~ 40 (71)
+.+|+. .+|+..+.|+.+|........+.+++.
T Consensus 52 i~~~~~~~~~~~~ea~~~Ai~~~dla~vk~~vn~ 85 (123)
T PF05396_consen 52 IMSHAEANSPAAAEAFNEAIESGDLATVKAAVNL 85 (123)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344553 478999999999987655544444443
No 375
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=28.55 E-value=36 Score=18.98 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=16.6
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|..++++.+++|.+-|..++.
T Consensus 82 y~m~s~~~WdRFMRFMeRYA~ 102 (111)
T PLN00039 82 YVMRSPREWDRFMRFMERYAE 102 (111)
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 345688999999999987654
No 376
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=28.30 E-value=86 Score=16.05 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.4
Q ss_pred CceeEeecCCccHHHHHHHHh
Q 047240 48 LKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 48 ~~~vvDvGGg~G~~~~~l~~~ 68 (71)
.-.|+|.+++.+.....++..
T Consensus 41 d~viiD~p~~~~~~~~~~l~~ 61 (104)
T cd02042 41 DYIIIDTPPSLGLLTRNALAA 61 (104)
T ss_pred CEEEEeCcCCCCHHHHHHHHH
Confidence 357899999988876655543
No 377
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=27.99 E-value=34 Score=23.72 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=8.7
Q ss_pred CceeEeecCCc
Q 047240 48 LKSLVDVGGGT 58 (71)
Q Consensus 48 ~~~vvDvGGg~ 58 (71)
.-.+|||||.+
T Consensus 250 ~ll~VDIGGAT 260 (463)
T TIGR01319 250 DFILIDIGGAT 260 (463)
T ss_pred CEEEEEcCccc
Confidence 46999999943
No 378
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=27.90 E-value=32 Score=25.37 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=10.7
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.++|||||-|.
T Consensus 696 ~~~~iDiGGGf~v 708 (861)
T PRK08961 696 DVRTIDLGGGLGI 708 (861)
T ss_pred CCcEEEecCccCc
Confidence 3689999999864
No 379
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=27.90 E-value=38 Score=18.86 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.5
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|.-++++.+++|.+-|..++.
T Consensus 81 y~m~s~~~WdRFMRFmeRYA~ 101 (109)
T TIGR03047 81 YIMKSEDEWDRFMRFMERYAE 101 (109)
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 334688999999999987654
No 380
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=27.76 E-value=33 Score=24.40 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=9.5
Q ss_pred CCceeEeecCCc
Q 047240 47 GLKSLVDVGGGT 58 (71)
Q Consensus 47 ~~~~vvDvGGg~ 58 (71)
....|+|+|||+
T Consensus 194 ~~vlv~D~GggT 205 (653)
T PTZ00009 194 KNVLIFDLGGGT 205 (653)
T ss_pred CEEEEEECCCCe
Confidence 346899999986
No 381
>PRK09790 hypothetical protein; Reviewed
Probab=27.63 E-value=29 Score=17.91 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.3
Q ss_pred CceeEeecCCccHH
Q 047240 48 LKSLVDVGGGTGTM 61 (71)
Q Consensus 48 ~~~vvDvGGg~G~~ 61 (71)
--+||||-|=+|.+
T Consensus 38 pftvvdidg~sgn~ 51 (91)
T PRK09790 38 PFTVVDIDGPSGNV 51 (91)
T ss_pred CeEEEeccCCCCce
Confidence 35899999988864
No 382
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=27.41 E-value=32 Score=22.23 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=9.1
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
-++|||||-.+.
T Consensus 201 frmvDvGGqrse 212 (359)
T KOG0085|consen 201 FRMVDVGGQRSE 212 (359)
T ss_pred eeeeecCCchhh
Confidence 479999996653
No 383
>PF03304 Mlp: Mlp lipoprotein family; InterPro: IPR004983 The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species []. This family were previously known as 2.9 lipoprotein genes []. These surface expressed genes may represent new candidate vaccinogens for Lyme disease []. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=27.19 E-value=52 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=19.7
Q ss_pred ChhhhhhcCcchHHHHHHHHHhcch
Q 047240 7 KFWDFVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~~~~ 31 (71)
.+|+||..|+....-+..++..+-.
T Consensus 64 ~ffdWLs~d~~kqKEl~~af~~vy~ 88 (152)
T PF03304_consen 64 NFFDWLSKDIQKQKELLNAFTEVYN 88 (152)
T ss_pred HHHHHHhcCcHHHHHHHHhHHHHHH
Confidence 3999999999888888888775433
No 384
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=27.13 E-value=40 Score=18.89 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.6
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|.-++++.+++|.+.|..++.
T Consensus 84 y~m~s~~~WdRFMRFMeRYA~ 104 (113)
T CHL00128 84 YIMKNPEAWDRFMRFMERYAE 104 (113)
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 345688999999999987654
No 385
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=27.11 E-value=46 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=16.7
Q ss_pred cCCCChhhhhhc-CcchHHHHHHHHH
Q 047240 3 TFRKKFWDFVAA-EPNLESIFYDAMI 27 (71)
Q Consensus 3 ~~g~~~f~~~~~-~p~~~~~F~~~M~ 27 (71)
.|-.++|+.|.+ ||+.-++|.+++-
T Consensus 140 Khh~PyY~lm~~vdp~aT~rfi~afW 165 (557)
T PF06917_consen 140 KHHYPYYELMYEVDPEATRRFIKAFW 165 (557)
T ss_dssp SS----HHHHHHH-HHHHHHHHHHHH
T ss_pred hhcCcHHHHHHhcCHHHHHHHHHHHH
Confidence 445689998875 9999999999985
No 386
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=26.87 E-value=2e+02 Score=19.90 Aligned_cols=56 Identities=21% Similarity=0.149 Sum_probs=35.0
Q ss_pred hcCcchHHHH-HHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCc-cHHHHHHHHhcCC
Q 047240 13 AAEPNLESIF-YDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGT-GTMARAIATGFLI 71 (71)
Q Consensus 13 ~~~p~~~~~F-~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~-G~~~~~l~~~~P~ 71 (71)
..||+....| .++|...+. .++.|++.|= -.....-.=.|.++ |......+++||+
T Consensus 81 ~~n~~~~~dfa~ra~h~~~~-~aK~l~~~~Y--g~~p~~sY~~GcS~GGRqgl~~AQryP~ 138 (474)
T PF07519_consen 81 GNNPEALLDFAYRALHETTV-VAKALIEAFY--GKAPKYSYFSGCSTGGRQGLMAAQRYPE 138 (474)
T ss_pred cCCHHHHHHHHhhHHHHHHH-HHHHHHHHHh--CCCCCceEEEEeCCCcchHHHHHHhChh
Confidence 3789998888 566665554 4577777664 12222233345444 4577788889985
No 387
>PHA03328 nuclear egress lamina protein UL31; Provisional
Probab=26.86 E-value=42 Score=22.12 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=20.0
Q ss_pred ChhhhhhcCcchHHHHHHHHHh
Q 047240 7 KFWDFVAAEPNLESIFYDAMIA 28 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M~~ 28 (71)
.+|+++.++|+....|.+-|..
T Consensus 64 ~fF~~ia~~Pele~~~LReM~~ 85 (316)
T PHA03328 64 AYFAYLASSPSDELALVRSLSV 85 (316)
T ss_pred HHHHHHhcCcHHHHHHHHhccC
Confidence 5799999999999999999984
No 388
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=26.82 E-value=40 Score=18.89 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=16.6
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|.-++++.+++|.+.|..++.
T Consensus 84 y~m~s~~~WdRFMRFMeRYA~ 104 (113)
T PRK13612 84 YIWKSEQEWDRFMRFMERYAK 104 (113)
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 344688999999999987654
No 389
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=26.80 E-value=90 Score=16.45 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=16.9
Q ss_pred CCceeEeecCCccHHHHHHHHh
Q 047240 47 GLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
..-.|+|.+++.+.....++..
T Consensus 43 ~D~IIiDtpp~~~~~~~~~l~~ 64 (106)
T cd03111 43 DDYVVVDLGRSLDEVSLAALDQ 64 (106)
T ss_pred CCEEEEeCCCCcCHHHHHHHHH
Confidence 3569999999999877666543
No 390
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=26.48 E-value=65 Score=15.32 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=15.8
Q ss_pred CChhhhhhcCcchHHHHHHH
Q 047240 6 KKFWDFVAAEPNLESIFYDA 25 (71)
Q Consensus 6 ~~~f~~~~~~p~~~~~F~~~ 25 (71)
.+++|-+.+.|+..+.|.+.
T Consensus 5 ~~I~el~~~yP~~~~il~~~ 24 (59)
T PF08984_consen 5 MTIYELLEQYPELIEILVSY 24 (59)
T ss_dssp SBHHHHHHH-GGGHHHHHHT
T ss_pred CCHHHHHHHCHHHHHHHHHc
Confidence 56888999999998888775
No 391
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.26 E-value=39 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.5
Q ss_pred CCCChhhhhhcCcchHHHHHHHHHhcc
Q 047240 4 FRKKFWDFVAAEPNLESIFYDAMIADS 30 (71)
Q Consensus 4 ~g~~~f~~~~~~p~~~~~F~~~M~~~~ 30 (71)
.|+++|+++. .+..+.|...-....
T Consensus 156 DGkslFdfm~--~e~l~eFvd~Ah~hG 180 (235)
T COG1891 156 DGKSLFDFMD--EEELEEFVDLAHEHG 180 (235)
T ss_pred cchhHHhhhc--HHHHHHHHHHHHHcc
Confidence 5789999885 456677777665543
No 392
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=26.01 E-value=60 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
.....+||.+| .+.+..+|.+.+
T Consensus 198 ~~~~v~VDfaG-~~~~~~~Lh~~l 220 (314)
T PF11017_consen 198 PQPVVIVDFAG-NGEVLAALHEHL 220 (314)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHH
Confidence 45679999996 778888777654
No 393
>PRK13055 putative lipid kinase; Reviewed
Probab=25.94 E-value=1.3e+02 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=16.6
Q ss_pred HHHHhchhhhCCCceeEeecCCccHHHHHH
Q 047240 36 VVIEDCKEVFKGLKSLVDVGGGTGTMARAI 65 (71)
Q Consensus 36 ~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l 65 (71)
.++.... ..+...|| |.||.|++...+
T Consensus 50 ~~~~~~~--~~~~d~vv-v~GGDGTl~evv 76 (334)
T PRK13055 50 NEAKRAA--EAGFDLII-AAGGDGTINEVV 76 (334)
T ss_pred HHHHHHh--hcCCCEEE-EECCCCHHHHHH
Confidence 3444443 34456777 778899976554
No 394
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=25.91 E-value=85 Score=19.93 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=16.3
Q ss_pred CCCceeEeecCCccHHHHHHHH
Q 047240 46 KGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
.+..+||..||++|..+.+++-
T Consensus 50 ~g~~~vv~~ggs~GN~g~alA~ 71 (307)
T cd06449 50 KGADTLVTVGGIQSNHTRQVAA 71 (307)
T ss_pred cCCCEEEECCCchhHHHHHHHH
Confidence 4557899998878887766653
No 395
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=25.70 E-value=40 Score=21.59 Aligned_cols=8 Identities=50% Similarity=0.613 Sum_probs=5.7
Q ss_pred CceeEeec
Q 047240 48 LKSLVDVG 55 (71)
Q Consensus 48 ~~~vvDvG 55 (71)
..=+||||
T Consensus 117 ~~yLvDVG 124 (281)
T PRK15047 117 EKWIADVG 124 (281)
T ss_pred eeEEEEec
Confidence 35688888
No 396
>PF03230 Antirestrict: Antirestriction protein; InterPro: IPR004914 This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of Escherichia coli [].; PDB: 2WJ9_B 2KMG_A.
Probab=25.37 E-value=67 Score=17.29 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=9.7
Q ss_pred hhhhhhcCcchHHHHH
Q 047240 8 FWDFVAAEPNLESIFY 23 (71)
Q Consensus 8 ~f~~~~~~p~~~~~F~ 23 (71)
+.+|..++||...+|.
T Consensus 76 Lr~ya~~HpE~~~I~~ 91 (94)
T PF03230_consen 76 LRDYALQHPESSAIFR 91 (94)
T ss_dssp HHHHHHCSTTHHHHHH
T ss_pred HHHHHHhChhHHHHHH
Confidence 4556666777666553
No 397
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=25.34 E-value=1.4e+02 Score=20.06 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
..++.+.+ .+.-..-|+--|+...+.+++++||+
T Consensus 107 ~S~Lpai~---~gVI~yNdc~D~t~Eiil~fckkyP~ 140 (347)
T PF06306_consen 107 ESILPAID---EGVIGYNDCTDGTEEIILEFCKKYPS 140 (347)
T ss_pred HHHHHHHh---ccEEEeecCCCCHHHHHHHHHHhCcc
Confidence 34555555 56677888888999999999999995
No 398
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=25.15 E-value=1.8e+02 Score=18.06 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=17.0
Q ss_pred hCCCceeEeecCC-cc---HHHHHHHHhcC
Q 047240 45 FKGLKSLVDVGGG-TG---TMARAIATGFL 70 (71)
Q Consensus 45 ~~~~~~vvDvGGg-~G---~~~~~l~~~~P 70 (71)
-.+..++||+|.. .| ..+.+++++++
T Consensus 43 ~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g 72 (293)
T cd00530 43 AHGGRTIVDATPPGIGRDVEKLAEVARATG 72 (293)
T ss_pred HcCCCeEEEcCCcccCcCHHHHHHHHHHhC
Confidence 4688999999973 35 34555555543
No 399
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=24.89 E-value=76 Score=21.17 Aligned_cols=54 Identities=7% Similarity=0.002 Sum_probs=27.3
Q ss_pred CCChhhhhhcCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHH
Q 047240 5 RKKFWDFVAAEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 5 g~~~f~~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~ 67 (71)
|.++.|.-.++|+..+.+..+-..... ++.. | .+...++=-|||+|.+.+.++.
T Consensus 34 g~si~eisHRs~~F~~i~~~~~~~Lr~-----Ll~~-P---~~y~Vlfl~GggT~~~ea~~~N 87 (364)
T PRK12462 34 GLSVLGMSHRSSWFSSLLAQAEADLRD-----LLGI-P---DEYGVVFLQGGSSLQFSMIPMN 87 (364)
T ss_pred CccccccccccHHHHHHHHHHHHHHHH-----HhCC-C---CCCeEEEEeccHHHHHHHHHHH
Confidence 455666666677766666665543222 2221 1 1233444455566666655543
No 400
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=24.75 E-value=62 Score=19.89 Aligned_cols=10 Identities=30% Similarity=0.900 Sum_probs=6.9
Q ss_pred CCceeEeecC
Q 047240 47 GLKSLVDVGG 56 (71)
Q Consensus 47 ~~~~vvDvGG 56 (71)
...+|+||||
T Consensus 91 ~~~~vidiGg 100 (248)
T TIGR00241 91 EARGVIDIGG 100 (248)
T ss_pred CCCEEEEecC
Confidence 4567888776
No 401
>PF14003 YlbE: YlbE-like protein
Probab=24.64 E-value=92 Score=15.70 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=17.3
Q ss_pred hhhhhhcCcchHHHHHHHHHhc
Q 047240 8 FWDFVAAEPNLESIFYDAMIAD 29 (71)
Q Consensus 8 ~f~~~~~~p~~~~~F~~~M~~~ 29 (71)
+|-.|.++|+....|...+...
T Consensus 14 WYR~LsR~P~~l~~fe~~a~~~ 35 (65)
T PF14003_consen 14 WYRILSRNPEELEAFEKEAKHF 35 (65)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 5667788999999998877654
No 402
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=24.51 E-value=34 Score=24.51 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=10.5
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
.-.-+|||||-|-
T Consensus 299 ~i~~~dVGGGLgV 311 (652)
T COG1166 299 NIKYFDVGGGLGV 311 (652)
T ss_pred CceEEeccCceee
Confidence 3688999999874
No 403
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=24.37 E-value=1.2e+02 Score=19.74 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=18.1
Q ss_pred CCCceeEeecCCc-cHHHHHHHHhcC
Q 047240 46 KGLKSLVDVGGGT-GTMARAIATGFL 70 (71)
Q Consensus 46 ~~~~~vvDvGGg~-G~~~~~l~~~~P 70 (71)
....+|+.+|.|. |..+.+++++..
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g 208 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG 208 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 3446778787665 888888888764
No 404
>PRK10742 putative methyltransferase; Provisional
Probab=24.32 E-value=1.4e+02 Score=18.96 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=25.3
Q ss_pred HHHHHHhchhhhCCC--ceeEeecCCccHHHHHHHHh
Q 047240 34 TIVVIEDCKEVFKGL--KSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~--~~vvDvGGg~G~~~~~l~~~ 68 (71)
.+.++++.. ..+. .+|+|+=.|.|..+..++.+
T Consensus 75 ~~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~ 109 (250)
T PRK10742 75 GEAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV 109 (250)
T ss_pred ccHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc
Confidence 456777775 4443 49999999999999888764
No 405
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=24.20 E-value=1e+02 Score=15.57 Aligned_cols=12 Identities=50% Similarity=1.019 Sum_probs=10.7
Q ss_pred eEeecCCccHHH
Q 047240 51 LVDVGGGTGTMA 62 (71)
Q Consensus 51 vvDvGGg~G~~~ 62 (71)
++|+|-|.|...
T Consensus 52 ~ld~~~g~g~~~ 63 (257)
T COG0500 52 VLDIGCGTGRLA 63 (257)
T ss_pred eEEecCCcCHHH
Confidence 999999999854
No 406
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=24.07 E-value=2e+02 Score=18.21 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=18.2
Q ss_pred CCCceeEeecCCccHHHHHHHHhcC
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
.....|+|+|+-.+..+.++.+..|
T Consensus 91 ~~~~iv~dvgs~k~~~~~~~~~~~~ 115 (307)
T PRK07502 91 KPGAIVTDVGSVKASVIAAMAPHLP 115 (307)
T ss_pred CCCCEEEeCccchHHHHHHHHHhCC
Confidence 4456899999888777777766544
No 407
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=24.05 E-value=29 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=13.4
Q ss_pred ecCCc-------cHHHHHHHHhcCC
Q 047240 54 VGGGT-------GTMARAIATGFLI 71 (71)
Q Consensus 54 vGGg~-------G~~~~~l~~~~P~ 71 (71)
+|||. |.++.+|.++||+
T Consensus 708 ~ggG~dyQ~~YGG~fLdeLq~~YP~ 732 (809)
T PF02324_consen 708 KGGGKDYQAKYGGAFLDELQKKYPD 732 (809)
T ss_dssp EB-CHSHHHHHTTTTHHHHHHH-GG
T ss_pred ccccHhHHHHHhHHHHHHHHHhChH
Confidence 68888 8889999999885
No 408
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=24.01 E-value=2.2e+02 Score=18.64 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=26.4
Q ss_pred HHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 25 AMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 25 ~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
............+...+.. ......|+=+|||.-.+-..|.+.+|+
T Consensus 270 ~~~~~~~~i~~~i~~~~~~-~~~~d~IiL~GGGA~ll~~~lk~~f~~ 315 (344)
T PRK13917 270 EQDSVIDEVMSGFEIAVGN-INSFDRVIVTGGGANIFFDSLSHWYSD 315 (344)
T ss_pred HHHHHHHHHHHHHHHHhcc-cCCCCEEEEECCcHHHHHHHHHHHcCC
Confidence 3333333333344444431 445666776888887777778887874
No 409
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=23.92 E-value=42 Score=20.37 Aligned_cols=8 Identities=38% Similarity=0.792 Sum_probs=7.1
Q ss_pred ceeEeecC
Q 047240 49 KSLVDVGG 56 (71)
Q Consensus 49 ~~vvDvGG 56 (71)
-.||||||
T Consensus 65 ~vVIDCGG 72 (183)
T PF03612_consen 65 CVVIDCGG 72 (183)
T ss_pred EEEEecCC
Confidence 58999998
No 410
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=23.86 E-value=1.2e+02 Score=16.40 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=11.5
Q ss_pred ceeEeecCCccHHHHHHH
Q 047240 49 KSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~ 66 (71)
..|| |.||.|++...+-
T Consensus 56 ~~iv-v~GGDGTl~~vv~ 72 (130)
T PF00781_consen 56 DVIV-VVGGDGTLNEVVN 72 (130)
T ss_dssp SEEE-EEESHHHHHHHHH
T ss_pred cEEE-EEcCccHHHHHHH
Confidence 4566 6667998876653
No 411
>PRK03641 hypothetical protein; Provisional
Probab=23.86 E-value=61 Score=19.94 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.6
Q ss_pred hhhhhcCcchHHHHHHHHHhc
Q 047240 9 WDFVAAEPNLESIFYDAMIAD 29 (71)
Q Consensus 9 f~~~~~~p~~~~~F~~~M~~~ 29 (71)
|-|.+.|++.+++|..+|...
T Consensus 197 ~Wy~qAd~etrk~F~~w~~~q 217 (220)
T PRK03641 197 YWFKQADPQTRNRFLQWAEKQ 217 (220)
T ss_pred HHHHhcCHHHHHHHHHHHHhC
Confidence 445677999999999998643
No 412
>PRK00861 putative lipid kinase; Reviewed
Probab=23.85 E-value=1.4e+02 Score=18.75 Aligned_cols=20 Identities=25% Similarity=0.650 Sum_probs=13.8
Q ss_pred CCCceeEeecCCccHHHHHHH
Q 047240 46 KGLKSLVDVGGGTGTMARAIA 66 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~ 66 (71)
.+...|| +.||.|++...+-
T Consensus 56 ~~~d~vv-~~GGDGTl~evv~ 75 (300)
T PRK00861 56 RGAELII-ASGGDGTLSAVAG 75 (300)
T ss_pred cCCCEEE-EECChHHHHHHHH
Confidence 4455677 7788999776553
No 413
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=23.85 E-value=46 Score=21.93 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=8.5
Q ss_pred ceeEeecCCcc
Q 047240 49 KSLVDVGGGTG 59 (71)
Q Consensus 49 ~~vvDvGGg~G 59 (71)
-+++||||-.+
T Consensus 238 ~~~~DvGGqr~ 248 (389)
T PF00503_consen 238 FRLIDVGGQRS 248 (389)
T ss_dssp EEEEEETSSGG
T ss_pred cceecCCCCch
Confidence 38999998654
No 414
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.83 E-value=92 Score=18.49 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=13.3
Q ss_pred eeEeecCCccHHHHHHHHh
Q 047240 50 SLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 50 ~vvDvGGg~G~~~~~l~~~ 68 (71)
.|||.|++.-..+.+.+++
T Consensus 3 ~~~d~~~~~~~~i~~~l~~ 21 (205)
T PRK13141 3 AIIDYGMGNLRSVEKALER 21 (205)
T ss_pred EEEEcCCchHHHHHHHHHH
Confidence 6899998766666665553
No 415
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=23.77 E-value=1.8e+02 Score=18.03 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=21.5
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+++.+.........|+|||+=-.....++.+..|
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC
Confidence 344444432245679999999988888888877655
No 416
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=23.69 E-value=54 Score=22.36 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=8.3
Q ss_pred CCceeEeecC
Q 047240 47 GLKSLVDVGG 56 (71)
Q Consensus 47 ~~~~vvDvGG 56 (71)
...+|+||||
T Consensus 241 ~v~TIIDIGG 250 (404)
T TIGR03286 241 GPATVIDIGG 250 (404)
T ss_pred CCcEEEEeCC
Confidence 3579999998
No 417
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.52 E-value=57 Score=18.25 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=7.2
Q ss_pred CceeEeecCC
Q 047240 48 LKSLVDVGGG 57 (71)
Q Consensus 48 ~~~vvDvGGg 57 (71)
...+||||+|
T Consensus 76 ~kV~v~lG~g 85 (140)
T PRK03947 76 DKVIVSLGAG 85 (140)
T ss_pred CeEEEEcCCC
Confidence 3578888876
No 418
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=23.50 E-value=51 Score=21.42 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=9.2
Q ss_pred CceeEeecCCccH
Q 047240 48 LKSLVDVGGGTGT 60 (71)
Q Consensus 48 ~~~vvDvGGg~G~ 60 (71)
...=.-||||.|+
T Consensus 285 g~lP~TIGGGIGQ 297 (330)
T COG2502 285 GELPQTIGGGIGQ 297 (330)
T ss_pred CCCCccccCcccH
Confidence 3444568999998
No 419
>PF14511 RE_EcoO109I: Type II restriction endonuclease EcoO109I; PDB: 1WTD_A 1WTE_A.
Probab=23.46 E-value=57 Score=20.06 Aligned_cols=23 Identities=17% Similarity=0.609 Sum_probs=17.3
Q ss_pred CCChhhhhhcCcchHHHHHHHHH
Q 047240 5 RKKFWDFVAAEPNLESIFYDAMI 27 (71)
Q Consensus 5 g~~~f~~~~~~p~~~~~F~~~M~ 27 (71)
|+.||+++..+++.-......|.
T Consensus 171 Gq~FW~~IsGd~~~y~~li~~ig 193 (200)
T PF14511_consen 171 GQEFWEFISGDENFYHELIEPIG 193 (200)
T ss_dssp THHHHHHHTT-TTHHHHHHHHHH
T ss_pred hHHHHHHhhCCcHHHHHHHHHHH
Confidence 67899999998887776666664
No 420
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=23.39 E-value=51 Score=18.19 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=16.3
Q ss_pred hhhcCcchHHHHHHHHHhcch
Q 047240 11 FVAAEPNLESIFYDAMIADSE 31 (71)
Q Consensus 11 ~~~~~p~~~~~F~~~M~~~~~ 31 (71)
|.-++++..++|.+.|..++.
T Consensus 77 y~m~s~~~wdRFMRFmeRYA~ 97 (104)
T PRK13611 77 YDMETEAEWDRFLRFMERFSA 97 (104)
T ss_pred EEECCHHHHHHHHHHHHHHHH
Confidence 334688899999999987654
No 421
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=23.38 E-value=72 Score=19.72 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=16.3
Q ss_pred ecCCccHHHHHHHHhcCC
Q 047240 54 VGGGTGTMARAIATGFLI 71 (71)
Q Consensus 54 vGGg~G~~~~~l~~~~P~ 71 (71)
|||-.|.-++..+..+|.
T Consensus 137 IGgR~G~klI~~va~~P~ 154 (227)
T COG4031 137 IGGRSGKKLILLVAQHPY 154 (227)
T ss_pred ecCccHHHHHHHHhcCCc
Confidence 899999999999999884
No 422
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=23.24 E-value=31 Score=22.11 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=11.8
Q ss_pred ceeEeecCCccHHHH
Q 047240 49 KSLVDVGGGTGTMAR 63 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~ 63 (71)
.-|+|+|.|.|+++-
T Consensus 241 pYiiDLgS~NgTfLN 255 (293)
T KOG1882|consen 241 PYIIDLGSGNGTFLN 255 (293)
T ss_pred eEEEecCCCCcceec
Confidence 368899999998763
No 423
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=23.21 E-value=44 Score=23.03 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=18.2
Q ss_pred HHhchhhhCCCceeEeecCCccHHHH
Q 047240 38 IEDCKEVFKGLKSLVDVGGGTGTMAR 63 (71)
Q Consensus 38 ~~~~d~~~~~~~~vvDvGGg~G~~~~ 63 (71)
++.+. ..+.++++-+||+.|.++.
T Consensus 96 i~~CQ--S~GiKVlLSLGG~~GnYs~ 119 (568)
T KOG4701|consen 96 IQVCQ--SNGIKVLLSLGGYNGNYSL 119 (568)
T ss_pred HHHHH--hcCeEEEEeccCcccceee
Confidence 34444 5678999999999998753
No 424
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=23.15 E-value=1.1e+02 Score=20.05 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.7
Q ss_pred CCCceeEeecCCccHHHHHHHHh
Q 047240 46 KGLKSLVDVGGGTGTMARAIATG 68 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~ 68 (71)
+....+|||=+|+|.++..+.+.
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~ 48 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKA 48 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHh
Confidence 44569999999999999887653
No 425
>PRK11914 diacylglycerol kinase; Reviewed
Probab=23.05 E-value=1.5e+02 Score=18.72 Aligned_cols=19 Identities=47% Similarity=0.816 Sum_probs=13.3
Q ss_pred CCCceeEeecCCccHHHHHH
Q 047240 46 KGLKSLVDVGGGTGTMARAI 65 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l 65 (71)
.+...|| |.||.|++...+
T Consensus 63 ~~~d~vv-v~GGDGTi~evv 81 (306)
T PRK11914 63 KGTDALV-VVGGDGVISNAL 81 (306)
T ss_pred cCCCEEE-EECCchHHHHHh
Confidence 4455777 778899976554
No 426
>PF04463 DUF523: Protein of unknown function (DUF523); InterPro: IPR007553 This entry contains uncharacterised bacterial proteins.
Probab=22.82 E-value=90 Score=17.82 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.8
Q ss_pred ecCCccHHHHHHHHhcCC
Q 047240 54 VGGGTGTMARAIATGFLI 71 (71)
Q Consensus 54 vGGg~G~~~~~l~~~~P~ 71 (71)
++-|.|.++..|.+++|.
T Consensus 119 ~~~g~Gifa~~l~~~~~~ 136 (143)
T PF04463_consen 119 LGKGSGIFAELLKEEGPK 136 (143)
T ss_pred ccCCCcHHHHHHHHhCCC
Confidence 344799999999999884
No 427
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=22.74 E-value=2.2e+02 Score=18.29 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=23.1
Q ss_pred HHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcC
Q 047240 35 IVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 35 ~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P 70 (71)
..+.+... .+.....|+=||||.=-+..+|.+.+|
T Consensus 261 ~~i~~~~~-~~~~~~~I~~vGGGA~ll~~~Ik~~~~ 295 (318)
T PF06406_consen 261 NRILRELG-DFSDIDRIFFVGGGAILLKDAIKEAFP 295 (318)
T ss_dssp HHHHHHHT-TS-S-SEEEEESTTHHHHHHHHHHHHT
T ss_pred HHHHHHHh-hhccCCeEEEECCcHHHHHHHHHHhhC
Confidence 34444432 255666777799998888888988876
No 428
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=22.61 E-value=1e+02 Score=21.61 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=17.7
Q ss_pred CceeEeecCCc-cHHHHHHHHhc
Q 047240 48 LKSLVDVGGGT-GTMARAIATGF 69 (71)
Q Consensus 48 ~~~vvDvGGg~-G~~~~~l~~~~ 69 (71)
...+|=||||. |.+++.-++..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~ 96 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQV 96 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhh
Confidence 57899999999 88888777654
No 429
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=22.46 E-value=1.8e+02 Score=17.28 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCccHHHHHHHHhcCC
Q 047240 18 LESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 18 ~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
+...|.+-|.+..... ..+.+... .-..-|+++|=|.|-.=-++.+.+|+
T Consensus 3 RLDsfi~RmtaQR~~L-~~a~~~v~---~~~G~VlElGLGNGRTydHLRe~~p~ 52 (160)
T PF12692_consen 3 RLDSFIRRMTAQRDCL-NWAAAQVA---GLPGPVLELGLGNGRTYDHLREIFPD 52 (160)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTT---T--S-EEEE--TTSHHHHHHHHH--S
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHhc---CCCCceEEeccCCCccHHHHHHhCCC
Confidence 4567888887655543 23334433 23378999999999999999998885
No 430
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=22.32 E-value=68 Score=18.67 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.1
Q ss_pred hhhhcCcchHHHHHHHHHhc
Q 047240 10 DFVAAEPNLESIFYDAMIAD 29 (71)
Q Consensus 10 ~~~~~~p~~~~~F~~~M~~~ 29 (71)
++++++|+..+.|.+++...
T Consensus 186 ~~~~~~pe~~~~f~~a~~~a 205 (216)
T PF09084_consen 186 EFLEKNPEAVKAFLKAYAKA 205 (216)
T ss_dssp HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHH
Confidence 36678999999999988753
No 431
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=22.26 E-value=42 Score=22.77 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=9.8
Q ss_pred ceeEeecCCccHHH
Q 047240 49 KSLVDVGGGTGTMA 62 (71)
Q Consensus 49 ~~vvDvGGg~G~~~ 62 (71)
..=+|||||+-.++
T Consensus 147 v~NlDIGGGTtN~s 160 (473)
T COG4819 147 VLNLDIGGGTTNYS 160 (473)
T ss_pred EEEEeccCCcccee
Confidence 34579999986543
No 432
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=22.21 E-value=1.6e+02 Score=20.42 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCCceeEeecCCccHHHHHHHHhc
Q 047240 46 KGLKSLVDVGGGTGTMARAIATGF 69 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l~~~~ 69 (71)
....+|+|++-+.|.-+.+|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l 135 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALM 135 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc
Confidence 455799999999999999888754
No 433
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.13 E-value=1.7e+02 Score=18.81 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=18.0
Q ss_pred HHHHHHhchhhhCCCceeEeecCCccHHHHHH
Q 047240 34 TIVVIEDCKEVFKGLKSLVDVGGGTGTMARAI 65 (71)
Q Consensus 34 ~~~~~~~~d~~~~~~~~vvDvGGg~G~~~~~l 65 (71)
+..+++... -.+..+|+ ++||.|++...+
T Consensus 47 a~~~a~~a~--~~~~D~vi-a~GGDGTv~evi 75 (301)
T COG1597 47 AIEIAREAA--VEGYDTVI-AAGGDGTVNEVA 75 (301)
T ss_pred HHHHHHHHH--hcCCCEEE-EecCcchHHHHH
Confidence 334444444 34667777 778899976544
No 434
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.09 E-value=1.1e+02 Score=19.81 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=12.8
Q ss_pred eEeecCCccHHHHHHHHh
Q 047240 51 LVDVGGGTGTMARAIATG 68 (71)
Q Consensus 51 vvDvGGg~G~~~~~l~~~ 68 (71)
|+=||||.+-++.+++-+
T Consensus 7 V~IvGaGiaGl~~A~~L~ 24 (396)
T PRK08163 7 VLIVGGGIGGLAAALALA 24 (396)
T ss_pred EEEECCcHHHHHHHHHHH
Confidence 343999998887776643
No 435
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=21.81 E-value=55 Score=19.10 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=11.0
Q ss_pred CCCceeEeecCCcc
Q 047240 46 KGLKSLVDVGGGTG 59 (71)
Q Consensus 46 ~~~~~vvDvGGg~G 59 (71)
.+...+||+||..=
T Consensus 34 ~~~~~~lDlGgd~~ 47 (153)
T PF00549_consen 34 GGPANFLDLGGDAF 47 (153)
T ss_dssp CTEEEEEECTSSSS
T ss_pred CCceeEEEeCCCcc
Confidence 34689999999765
No 436
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=21.76 E-value=76 Score=14.55 Aligned_cols=11 Identities=18% Similarity=0.024 Sum_probs=5.8
Q ss_pred HHHHHHHhcCC
Q 047240 61 MARAIATGFLI 71 (71)
Q Consensus 61 ~~~~l~~~~P~ 71 (71)
-+.++.++||+
T Consensus 33 ~L~~Lm~~~PD 43 (43)
T PF09550_consen 33 ELDALMRRFPD 43 (43)
T ss_pred HHHHHHHHCcC
Confidence 34555555554
No 437
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=21.74 E-value=69 Score=19.49 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=13.6
Q ss_pred eeEeecCCccHHHHHHHHhcC
Q 047240 50 SLVDVGGGTGTMARAIATGFL 70 (71)
Q Consensus 50 ~vvDvGGg~G~~~~~l~~~~P 70 (71)
--+|||| -+++.+-+++|.
T Consensus 118 EnIDIGG--psmlRaAAKN~~ 136 (187)
T cd01421 118 ENIDIGG--PSLLRAAAKNYK 136 (187)
T ss_pred HhccCCc--HHHHHHHHhcCC
Confidence 3589997 467777777764
No 438
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=21.68 E-value=85 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.363 Sum_probs=21.0
Q ss_pred CCCChhhhhh--------cCcchHHHHHHHHHhcch
Q 047240 4 FRKKFWDFVA--------AEPNLESIFYDAMIADSE 31 (71)
Q Consensus 4 ~g~~~f~~~~--------~~p~~~~~F~~~M~~~~~ 31 (71)
.+.++|||+- .++...+.|..+|.++..
T Consensus 286 ~~DS~YEYLlK~~il~~~~d~~~~~~~~~a~~~i~~ 321 (522)
T PTZ00470 286 LGDSYYEYLLKQWLYTNGREERYRRLFVESAKGIIE 321 (522)
T ss_pred CcchhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3468999883 367788899999987644
No 439
>PF10887 DUF2686: Protein of unknown function (DUF2686); InterPro: IPR021220 Some members in this family of proteins are annotated as yjfZ however currently no function is known.
Probab=21.54 E-value=93 Score=19.75 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=19.5
Q ss_pred ceeEeecCCccHHHHHHHHhcCC
Q 047240 49 KSLVDVGGGTGTMARAIATGFLI 71 (71)
Q Consensus 49 ~~vvDvGGg~G~~~~~l~~~~P~ 71 (71)
.+|--|.-+.|..+++|+.++|+
T Consensus 193 ~TVtGVsNssGF~~AALLNAn~~ 215 (276)
T PF10887_consen 193 MTVTGVSNSSGFALAALLNANIG 215 (276)
T ss_pred EEeeccccchhHHHHHHHhcccc
Confidence 46777788999999999999874
No 440
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=21.34 E-value=1.4e+02 Score=21.32 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=20.5
Q ss_pred HHHhcchhhHHHHHHhchhhhC-CCceeEeec----CCccHHHHHHHH
Q 047240 25 AMIADSELITIVVIEDCKEVFK-GLKSLVDVG----GGTGTMARAIAT 67 (71)
Q Consensus 25 ~M~~~~~~~~~~~~~~~d~~~~-~~~~vvDvG----Gg~G~~~~~l~~ 67 (71)
.|.......+..+.+.|+ .. ....+|=|| ||.|..+++.+.
T Consensus 114 LME~AG~avA~~I~~~~~--~~~~~~VlVlcGpGNNGGDGLVaAR~L~ 159 (544)
T PLN02918 114 LMELAGLSVAASIAEVYK--PGEYSRVLAICGPGNNGGDGLVAARHLH 159 (544)
T ss_pred HHHHHHHHHHHHHHHhcc--cccCCEEEEEECCCcCHHHHHHHHHHHH
Confidence 454444444555666665 21 123444344 456666666654
No 441
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=21.15 E-value=40 Score=21.31 Aligned_cols=8 Identities=63% Similarity=0.974 Sum_probs=6.3
Q ss_pred EeecCCcc
Q 047240 52 VDVGGGTG 59 (71)
Q Consensus 52 vDvGGg~G 59 (71)
.|||||..
T Consensus 250 sDVGGGy~ 257 (277)
T PF09994_consen 250 SDVGGGYP 257 (277)
T ss_pred cccCCCCC
Confidence 58888876
No 442
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.13 E-value=2.8e+02 Score=18.81 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=37.4
Q ss_pred hhhhh-cCcchHHH---HHHHHHhcchhhHHHHHHhchhhhCCCceeEeec---CCccHHHHHHHHh
Q 047240 9 WDFVA-AEPNLESI---FYDAMIADSELITIVVIEDCKEVFKGLKSLVDVG---GGTGTMARAIATG 68 (71)
Q Consensus 9 f~~~~-~~p~~~~~---F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvG---Gg~G~~~~~l~~~ 68 (71)
.|.++ ++|++.+. |.....-...+.....++.|. +|-+-..|||.. |++-...-+|+++
T Consensus 96 leilyeed~~f~ksv~kfie~ieksealigke~irryg-gfygptcvvdfal~pgstsnvvnrilk~ 161 (500)
T COG4883 96 LEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYG-GFYGPTCVVDFALVPGSTSNVVNRILKK 161 (500)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhc-CccCCceEEEEEecCCchHHHHHHHHHh
Confidence 34443 35555443 333333344455667788886 588889999965 7777777777764
No 443
>PRK04334 hypothetical protein; Provisional
Probab=21.09 E-value=1.4e+02 Score=18.85 Aligned_cols=30 Identities=30% Similarity=0.374 Sum_probs=17.7
Q ss_pred HHhcchhhHHHHHHhchhhhCC-CceeEeecCC
Q 047240 26 MIADSELITIVVIEDCKEVFKG-LKSLVDVGGG 57 (71)
Q Consensus 26 M~~~~~~~~~~~~~~~d~~~~~-~~~vvDvGGg 57 (71)
|++.....++.+.+.+. -.+ ...+||.||-
T Consensus 88 MAAVAG~iaD~v~~~L~--~~G~~~~lV~~GGD 118 (251)
T PRK04334 88 MAAVAGAIAQEVVEALV--EAGSKRAIVENGGD 118 (251)
T ss_pred HHHHHHHHHHHHHHHHH--HCCCCeEEEECCCc
Confidence 44444445556666654 223 4688999984
No 444
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.06 E-value=53 Score=19.84 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=10.2
Q ss_pred hCCCceeEeecCCc
Q 047240 45 FKGLKSLVDVGGGT 58 (71)
Q Consensus 45 ~~~~~~vvDvGGg~ 58 (71)
......++|||+++
T Consensus 29 ~~~GAdiIDIg~~s 42 (210)
T PF00809_consen 29 VEAGADIIDIGAES 42 (210)
T ss_dssp HHTT-SEEEEESST
T ss_pred HHhcCCEEEecccc
Confidence 34567899999876
No 445
>PRK01904 hypothetical protein; Provisional
Probab=20.81 E-value=75 Score=19.51 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=15.9
Q ss_pred hhhhhcCcchHHHHHHHHHh
Q 047240 9 WDFVAAEPNLESIFYDAMIA 28 (71)
Q Consensus 9 f~~~~~~p~~~~~F~~~M~~ 28 (71)
|-|...|++.+++|..+|..
T Consensus 198 ~Wy~qAd~etrk~F~~w~~~ 217 (219)
T PRK01904 198 YWFQQADKETQTRFLNWAKK 217 (219)
T ss_pred HHHHHcCHHHHHHHHHHHhh
Confidence 44556799999999999854
No 446
>PF15538 Toxin_61: Putative toxin 61
Probab=20.79 E-value=2e+02 Score=17.08 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=30.7
Q ss_pred cCcchHHHHHHHHHhcchhhHHHHHHhchhhhCCCceeEeecCCc
Q 047240 14 AEPNLESIFYDAMIADSELITIVVIEDCKEVFKGLKSLVDVGGGT 58 (71)
Q Consensus 14 ~~p~~~~~F~~~M~~~~~~~~~~~~~~~d~~~~~~~~vvDvGGg~ 58 (71)
.+.|....|...- ++....+...+++.| |+.-.+|..|..|.
T Consensus 23 gn~e~a~~F~~s~-G~~~~~~~~~m~GID--f~~PV~VetIn~Gk 64 (157)
T PF15538_consen 23 GNREIASDFFKSQ-GLTEADMESYMNGID--FSKPVKVETINRGK 64 (157)
T ss_pred cchHHHHHHHHHc-CCCHHHHHHHhccCC--cCCceEEEEeCCCC
Confidence 4566666666554 455556778889999 99999999998763
No 447
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=20.78 E-value=75 Score=17.58 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=9.2
Q ss_pred cHHHHHHHHhcCC
Q 047240 59 GTMARAIATGFLI 71 (71)
Q Consensus 59 G~~~~~l~~~~P~ 71 (71)
|.++..++.+||+
T Consensus 84 GyVa~k~~~k~p~ 96 (106)
T PF12596_consen 84 GYVAKKFRNKYPN 96 (106)
T ss_pred HHHHHHHHhcCCc
Confidence 5777777777774
No 448
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=20.70 E-value=1.9e+02 Score=18.21 Aligned_cols=19 Identities=32% Similarity=0.767 Sum_probs=12.6
Q ss_pred CCCceeEeecCCccHHHHHH
Q 047240 46 KGLKSLVDVGGGTGTMARAI 65 (71)
Q Consensus 46 ~~~~~vvDvGGg~G~~~~~l 65 (71)
.+...|| +.||.|++...+
T Consensus 51 ~~~d~vv-~~GGDGTi~ev~ 69 (293)
T TIGR03702 51 LGVSTVI-AGGGDGTLREVA 69 (293)
T ss_pred cCCCEEE-EEcCChHHHHHH
Confidence 4456777 777899865443
No 449
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=20.66 E-value=71 Score=16.71 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=14.9
Q ss_pred ChhhhhhcCcchHHHHHHHH
Q 047240 7 KFWDFVAAEPNLESIFYDAM 26 (71)
Q Consensus 7 ~~f~~~~~~p~~~~~F~~~M 26 (71)
.+++-+.++|+..++|..-=
T Consensus 8 rli~~L~~dp~~rerF~~DP 27 (81)
T cd07922 8 RLIQELFKDPGLIERFQDDP 27 (81)
T ss_pred HHHHHHhcCHHHHHHHHHCH
Confidence 35667888998888887643
No 450
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.53 E-value=1.9e+02 Score=16.78 Aligned_cols=22 Identities=5% Similarity=0.150 Sum_probs=14.5
Q ss_pred eeEeecCCccHHHH---HHHHhcCC
Q 047240 50 SLVDVGGGTGTMAR---AIATGFLI 71 (71)
Q Consensus 50 ~vvDvGGg~G~~~~---~l~~~~P~ 71 (71)
+|.=+|+..+.... .+.+.||+
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~yp~ 72 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARYPG 72 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCC
Confidence 33337887777666 47777774
No 451
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.43 E-value=73 Score=17.49 Aligned_cols=10 Identities=60% Similarity=0.807 Sum_probs=7.4
Q ss_pred CceeEeecCC
Q 047240 48 LKSLVDVGGG 57 (71)
Q Consensus 48 ~~~vvDvGGg 57 (71)
...+|+||+|
T Consensus 69 ~~v~v~iG~g 78 (129)
T cd00584 69 DKVLVDLGTG 78 (129)
T ss_pred CEEEEEcCCC
Confidence 4578888876
No 452
>PF15484 DUF4642: Domain of unknown function (DUF4642)
Probab=20.43 E-value=45 Score=19.61 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=12.5
Q ss_pred HHhchhhhCCCceeEeecC
Q 047240 38 IEDCKEVFKGLKSLVDVGG 56 (71)
Q Consensus 38 ~~~~d~~~~~~~~vvDvGG 56 (71)
+.+.- ||.-..|||+|=
T Consensus 124 LKGVT--FSrEVIVVDLG~ 140 (156)
T PF15484_consen 124 LKGVT--FSREVIVVDLGK 140 (156)
T ss_pred cccce--eeeeEEEEECCC
Confidence 34444 777889999994
No 453
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.36 E-value=1.5e+02 Score=20.50 Aligned_cols=41 Identities=20% Similarity=0.125 Sum_probs=20.9
Q ss_pred HHHhcchhhHHHHHHhchhhhC-CCceeEeec----CCccHHHHHHHH
Q 047240 25 AMIADSELITIVVIEDCKEVFK-GLKSLVDVG----GGTGTMARAIAT 67 (71)
Q Consensus 25 ~M~~~~~~~~~~~~~~~d~~~~-~~~~vvDvG----Gg~G~~~~~l~~ 67 (71)
.|.......+..+.+.|+ -. ....+|=|| ||.|..+++.+.
T Consensus 38 LME~AG~ava~~i~~~~~--~~~~~~VlVlcG~GNNGGDGlv~AR~L~ 83 (462)
T PLN03049 38 LMELAGLSVASAIAEVYS--PSEYRRVLALCGPGNNGGDGLVAARHLH 83 (462)
T ss_pred HHHHHHHHHHHHHHHhcc--cccCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 455444445556666666 22 223444344 455666666554
No 454
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=20.29 E-value=62 Score=18.83 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=10.2
Q ss_pred ceeEeecCCccHH
Q 047240 49 KSLVDVGGGTGTM 61 (71)
Q Consensus 49 ~~vvDvGGg~G~~ 61 (71)
...+|+|||.|..
T Consensus 182 ~~~i~~Ggg~~~~ 194 (211)
T cd06808 182 LEQLSIGGSFAIL 194 (211)
T ss_pred CCEEEECCCCCcC
Confidence 3589999998853
No 455
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=20.20 E-value=55 Score=21.87 Aligned_cols=12 Identities=25% Similarity=0.554 Sum_probs=8.3
Q ss_pred ceeEeecCCccH
Q 047240 49 KSLVDVGGGTGT 60 (71)
Q Consensus 49 ~~vvDvGGg~G~ 60 (71)
.-++|+||++=+
T Consensus 166 ~g~lDlGGaStQ 177 (434)
T PF01150_consen 166 VGALDLGGASTQ 177 (434)
T ss_dssp EEEEEE-SSEEE
T ss_pred EEEEecCCccee
Confidence 478999998643
No 456
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=20.11 E-value=1e+02 Score=19.04 Aligned_cols=21 Identities=24% Similarity=0.078 Sum_probs=16.8
Q ss_pred CCceeEeecCCccHHHHHHHH
Q 047240 47 GLKSLVDVGGGTGTMARAIAT 67 (71)
Q Consensus 47 ~~~~vvDvGGg~G~~~~~l~~ 67 (71)
+...+||+.+|.+..+.++..
T Consensus 9 ~n~s~vD~~ws~~~~~~a~~~ 29 (235)
T PF06966_consen 9 RNESIVDILWSFGFVLVAWVY 29 (235)
T ss_pred CCCCEEECcccHHHHHHHHHH
Confidence 557899999999988776654
No 457
>PRK04517 hypothetical protein; Provisional
Probab=20.10 E-value=80 Score=19.38 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=15.6
Q ss_pred hhhhhcCcchHHHHHHHHH
Q 047240 9 WDFVAAEPNLESIFYDAMI 27 (71)
Q Consensus 9 f~~~~~~p~~~~~F~~~M~ 27 (71)
|-|...|++-+++|..+|.
T Consensus 196 ~Wy~qAd~etrk~F~~w~~ 214 (216)
T PRK04517 196 FWYNKADAETKARFKAYVN 214 (216)
T ss_pred HHHHHcCHHHHHHHHHHHh
Confidence 4466779999999999885
Done!