Query 047241
Match_columns 142
No_of_seqs 221 out of 1154
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4E-27 1.4E-31 156.5 6.2 61 10-70 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 89.4 0.26 8.8E-06 33.4 2.9 24 6-29 3-27 (77)
3 1u3e_M HNH homing endonuclease 84.0 0.18 6.1E-06 37.7 -0.4 37 12-52 110-146 (174)
4 1z1b_A Integrase; protein-DNA 81.4 2.3 8E-05 33.1 5.3 42 12-58 14-55 (356)
5 1b69_A Protein (integrase); in 66.6 7.9 0.00027 25.5 4.0 32 3-36 4-35 (69)
6 1x60_A Sporulation-specific N- 51.5 9.9 0.00034 24.0 2.5 23 34-56 46-68 (79)
7 1uta_A FTSN, MSGA, cell divisi 43.9 14 0.00048 23.6 2.3 23 34-56 46-68 (81)
8 3jtz_A Integrase; four strande 38.8 35 0.0012 22.7 3.7 44 14-58 28-75 (88)
9 3ju0_A Phage integrase; four s 35.5 77 0.0026 21.8 5.2 43 15-58 29-75 (108)
10 2ftc_I Mitochondrial ribosomal 26.9 1.2E+02 0.0041 21.3 5.1 35 22-59 80-114 (118)
11 2dhx_A Poly (ADP-ribose) polym 24.1 47 0.0016 23.3 2.4 22 114-135 7-28 (104)
12 1x4e_A RNA binding motif, sing 20.2 70 0.0024 19.4 2.5 33 36-68 49-82 (85)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.94 E-value=4e-27 Score=156.48 Aligned_cols=61 Identities=72% Similarity=1.258 Sum_probs=58.3
Q ss_pred ceeEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 047241 10 KYRGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMRGHLAILNFPHE 70 (142)
Q Consensus 10 ~yrGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~G~~a~~NFp~~ 70 (142)
+|+||++++||||+|+|+++..+|+++|||+|+|+||||+|||.|++.++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999998899999999999877789999999999999999999999999999999999976
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=89.45 E-value=0.26 Score=33.43 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=19.0
Q ss_pred CCCcceeEeEEC-CCCcEEEEEecC
Q 047241 6 RGEVKYRGVRRR-PWGKFAAEIRDS 29 (142)
Q Consensus 6 ~~~S~yrGV~~r-~~Gkw~A~I~~~ 29 (142)
...|+|.||++. ..+.|.|...+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 357999999854 469999999874
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=83.96 E-value=0.18 Score=37.69 Aligned_cols=37 Identities=8% Similarity=-0.080 Sum_probs=26.1
Q ss_pred eEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHH
Q 047241 12 RGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYD 52 (142)
Q Consensus 12 rGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD 52 (142)
+||.....++|.+.|... +.++||.|+|.+|||++|.
T Consensus 110 ~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 110 KAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence 455332235688888652 4567999999999999963
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=81.44 E-value=2.3 Score=33.11 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=30.6
Q ss_pred eEeEECCCCcEEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhh
Q 047241 12 RGVRRRPWGKFAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSM 58 (142)
Q Consensus 12 rGV~~r~~Gkw~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~ 58 (142)
.||+.++.|.|..+.. .+|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~---~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP---RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT---TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee---cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 3687778899998763 3688999996 8888877665544433
No 5
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=66.58 E-value=7.9 Score=25.46 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCCCCcceeEeEECCCCcEEEEEecCCCCCeEE
Q 047241 3 EEPRGEVKYRGVRRRPWGKFAAEIRDSNRHGQRV 36 (142)
Q Consensus 3 ~~~~~~S~yrGV~~r~~Gkw~A~I~~~~~~gk~i 36 (142)
+-.++..-+.|++.+..|+|+..+.+. .|++.
T Consensus 4 kD~kgr~L~~GesqR~dG~Y~yry~d~--~Gkr~ 35 (69)
T 1b69_A 4 RDNRGRILKTGESQRKDGRYLYKYIDS--FGEPQ 35 (69)
T ss_dssp CCSSSSCCCTTEEECSSSCEEEEEECT--TSSEE
T ss_pred cccCCCccCCCeEEccCCcEEEEEEcC--CCCEE
Confidence 334556778899999999999999885 35554
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=51.50 E-value=9.9 Score=24.01 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 047241 34 QRVWLGTFNTAEEAARAYDRAAY 56 (142)
Q Consensus 34 k~i~LGtF~t~EEAA~AYD~aa~ 56 (142)
-+|++|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999988777654
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=43.92 E-value=14 Score=23.60 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 047241 34 QRVWLGTFNTAEEAARAYDRAAY 56 (142)
Q Consensus 34 k~i~LGtF~t~EEAA~AYD~aa~ 56 (142)
-+|.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999988777654
No 8
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=38.84 E-value=35 Score=22.66 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=29.9
Q ss_pred eEECCCC--cEEEEEecCCCCCeEEeecCCC--CHHHHHHHHHHHHHhh
Q 047241 14 VRRRPWG--KFAAEIRDSNRHGQRVWLGTFN--TAEEAARAYDRAAYSM 58 (142)
Q Consensus 14 V~~r~~G--kw~A~I~~~~~~gk~i~LGtF~--t~EEAA~AYD~aa~~~ 58 (142)
|+-.+.| .|.-+.+.. .+.+++-||.|+ |+.+|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~-Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRIS-GKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEET-TEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeC-CeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444543 588887753 234678999997 5888887777766655
No 9
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=35.52 E-value=77 Score=21.78 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=28.7
Q ss_pred EECCCC--cEEEEEecCCCCCeEEeecCCC--CHHHHHHHHHHHHHhh
Q 047241 15 RRRPWG--KFAAEIRDSNRHGQRVWLGTFN--TAEEAARAYDRAAYSM 58 (142)
Q Consensus 15 ~~r~~G--kw~A~I~~~~~~gk~i~LGtF~--t~EEAA~AYD~aa~~~ 58 (142)
+-.+.| .|.-+.+.. .+.+++-||.|+ |+.+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~-GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFE-KKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEET-TEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEc-CceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 445544 588887753 233568899997 5888877776666555
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.86 E-value=1.2e+02 Score=21.32 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=27.2
Q ss_pred EEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHhhc
Q 047241 22 FAAEIRDSNRHGQRVWLGTFNTAEEAARAYDRAAYSMR 59 (142)
Q Consensus 22 w~A~I~~~~~~gk~i~LGtF~t~EEAA~AYD~aa~~~~ 59 (142)
|+|.|.. ...-+-++...+++.|..|...|+.++-
T Consensus 80 wva~Vk~---G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA---GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC---CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999954 2245566666889999999999998874
No 11
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.08 E-value=47 Score=23.30 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=17.8
Q ss_pred CCceEEEeeCChHHHHHHHhhh
Q 047241 114 GKQVIELEYLDDNLLDELLEQE 135 (142)
Q Consensus 114 ~~~v~~~e~l~~~~le~ll~~~ 135 (142)
.+..|+.+.|++++.+++|..-
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LY 28 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLY 28 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHH
T ss_pred CccEEEEECCCCCCChhHheEE
Confidence 3456999999999989888776
No 12
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.18 E-value=70 Score=19.44 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=20.6
Q ss_pred EeecCCCCHHHHHHHHHHH-HHhhcCCCCCCCCC
Q 047241 36 VWLGTFNTAEEAARAYDRA-AYSMRGHLAILNFP 68 (142)
Q Consensus 36 i~LGtF~t~EEAA~AYD~a-a~~~~G~~a~~NFp 68 (142)
+-.=.|.+.++|..|.... -..+.|......+|
T Consensus 49 ~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 49 YGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4445899999999998743 23344544444443
Done!