BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047242
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 52/193 (26%)
Query: 33 ISRDLYRRLYMISRKLFDL-AFDAKLELGPSSSTNTYTPHFIASPFFESLRVSGPNFFAS 91
+ RD +RL ++ +L DL + LE G ++ + F+ S GPNF
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKG-----------YLKNAFYGS---KGPNFGTK 158
Query: 92 ANFENKYYESEFKNCHGYLRIINCSPPEALENEVEGLGMHTDMSCITIVYQDE-IGGLQT 150
++ PP + ++GL HTD I +++QD+ + GLQ
Sbjct: 159 ---------------------VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL 197
Query: 151 TRR---------------NIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEK 195
+ N+GD L+ N +++S+ H V+ ++ SL F+ +
Sbjct: 198 LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDA 257
Query: 196 VILPSDEVVGEES 208
VI P+ +V +E+
Sbjct: 258 VIYPAPALVEKEA 270
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 93 NFENKYYESEFKNCHGYLRIINCSPPEALENEVEGL--GMHTDMSCITIVYQDEIGGLQT 150
E +++ ++ + LR+++ P + + G+ G H D++ IT++ E GGL+
Sbjct: 154 KLERDFFKPTVQDGNSVLRLLHYPP---IPKDATGVRAGAHGDINTITLLLGAEEGGLEV 210
Query: 151 TRR----------------NIGDMLQAWGNERFRSLEHWVV----LRQSVNCLSLVFFWC 190
R NIGD L+ N S H VV R+ V S FF
Sbjct: 211 LDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLH 270
Query: 191 FEEE 194
F +
Sbjct: 271 FASD 274
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 127 GLGMHTDMSCITIVYQDEIGGLQ---------------TTRRNIGDMLQAWGNERFRSLE 171
G+ HTD+S +T + + + GLQ + +IGD L+ N +++S+
Sbjct: 228 GVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSIL 287
Query: 172 HWVVLRQSVNCLSLVFFWCFEEEKVIL-PSDEVVGEES 208
H ++ + +S F ++K++L P E V ES
Sbjct: 288 HRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVES 325
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 92/251 (36%), Gaps = 69/251 (27%)
Query: 24 GFFLISNHGISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFIASPFFESLRV 83
G + NHGI DL R+ + F L+ + K + +T + S ++
Sbjct: 78 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 84 SGPN-FFASANFENK------------YYE--SEFKNCHGYLRIINCS-----------P 117
+ FF A E K Y E SE+ C LR++
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKC---LRLLATKVFKALSVGLGLE 194
Query: 118 PEALENEVEGLG------------------------MHTDMSCITIVYQDEIGGLQ---- 149
P+ LE EV GL HTD+S +T + + + GLQ
Sbjct: 195 PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE 254
Query: 150 -----------TTRRNIGDMLQAWGNERFRSLEHWVVLRQSVNCLSLVFFWCFEEEKVIL 198
+ +IGD L+ N +++S+ H ++ + +S F ++K++L
Sbjct: 255 GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVL 314
Query: 199 -PSDEVVGEES 208
P E+V ES
Sbjct: 315 KPLPEMVSVES 325
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 127 GLGMHTDMSCITIVYQDEIGGLQ---------------TTRRNIGDMLQAWGNERFRSLE 171
G+ HTD+S +T + + + GLQ + +IGD L+ N +++S+
Sbjct: 227 GVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL 286
Query: 172 HWVVLRQSVNCLSLVFFWCFEEEKVIL-PSDEVVGEES 208
H ++ + +S F ++K++L P E+V ES
Sbjct: 287 HRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVES 324
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 33 ISRDLYRRLYMISRKLFDLAFDAKLELGPSSSTNTYTPHFI 73
+++ + +RL+ + ++ FDA ++L + NT HFI
Sbjct: 133 VAKTILKRLFRVYAHIYHQHFDAVMQLQEEAHLNTSFKHFI 173
>pdb|1ZXQ|A Chain A, The Crystal Structure Of Icam-2
Length = 192
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 118 PEALENEVEGLGMHTDMSCITIVYQDEIGGLQTTRRNI-GDMLQAWGNERFRSLEHWVVL 176
P+ L E +G +++C T Q E+GGL+T+ I D W + ++ H VL
Sbjct: 9 PKKLAVEPKG---SLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVL 65
Query: 177 RQSVNC 182
+ C
Sbjct: 66 QCHFTC 71
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 54 DAKLELGPSSSTNTYTPHF---IASPFFESLRV 83
D KL + PS+ TN TP + I FE+LR+
Sbjct: 334 DFKLHISPSNMTNQNTPEYMEKIKQRLFENLRM 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,438,260
Number of Sequences: 62578
Number of extensions: 250742
Number of successful extensions: 470
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 11
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)