Query 047244
Match_columns 125
No_of_seqs 108 out of 817
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 99.9 1.5E-25 3.3E-30 173.5 10.5 96 1-103 140-235 (236)
2 PF00139 Lectin_legB: Legume l 99.9 1.6E-23 3.4E-28 161.8 8.3 96 1-101 141-236 (236)
3 cd01951 lectin_L-type legume l 99.7 8.4E-18 1.8E-22 128.3 9.2 69 31-101 154-222 (223)
4 cd07308 lectin_leg-like legume 98.4 1.7E-06 3.8E-11 65.9 8.6 65 31-101 152-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 98.1 2.4E-05 5.1E-10 60.7 8.9 68 31-102 155-223 (225)
6 cd06903 lectin_EMP46_EMP47 EMP 97.1 0.0039 8.4E-08 48.1 8.4 61 30-101 150-212 (215)
7 PF03388 Lectin_leg-like: Legu 96.8 0.0027 5.8E-08 49.1 5.3 63 31-99 159-224 (229)
8 cd06901 lectin_VIP36_VIPL VIP3 96.6 0.013 2.9E-07 46.1 8.2 66 31-102 157-222 (248)
9 KOG3838 Mannose lectin ERGIC-5 95.7 0.054 1.2E-06 45.7 7.6 66 33-104 189-257 (497)
10 KOG3839 Lectin VIP36, involved 91.3 0.34 7.3E-06 40.0 4.3 60 34-100 212-272 (351)
11 cd06900 lectin_VcfQ VcfQ bacte 89.4 1.7 3.6E-05 34.6 6.6 27 72-98 225-251 (255)
12 PF11225 DUF3024: Protein of u 43.6 14 0.00029 22.5 1.1 22 35-56 6-27 (57)
13 PF13619 KTSC: KTSC domain 40.5 37 0.00081 20.5 2.8 19 35-53 6-24 (60)
14 PF07472 PA-IIL: Fucose-bindin 40.0 1.3E+02 0.0028 21.0 6.0 54 39-99 49-106 (107)
15 cd08389 C2A_Synaptotagmin-14_1 37.2 53 0.0012 22.3 3.5 22 33-54 4-25 (124)
16 cd00276 C2B_Synaptotagmin C2 d 36.2 58 0.0013 21.8 3.5 21 34-54 3-23 (134)
17 cd08390 C2A_Synaptotagmin-15-1 35.4 62 0.0013 21.4 3.5 22 33-54 2-23 (123)
18 PHA02104 hypothetical protein 34.1 26 0.00055 23.0 1.3 15 29-43 56-70 (89)
19 cd04029 C2A_SLP-4_5 C2 domain 32.1 71 0.0015 21.8 3.4 21 34-54 4-24 (125)
20 PF10049 DUF2283: Protein of u 30.6 66 0.0014 18.8 2.6 15 37-51 2-16 (50)
21 cd08521 C2A_SLP C2 domain firs 30.1 88 0.0019 20.6 3.6 21 34-54 3-23 (123)
22 cd08409 C2B_Synaptotagmin-15 C 27.1 95 0.0021 21.5 3.4 21 34-54 4-24 (137)
23 cd08388 C2A_Synaptotagmin-4-11 25.3 1.2E+02 0.0027 20.7 3.7 22 33-54 4-25 (128)
24 COG4540 gpV Phage P2 baseplate 24.7 49 0.0011 25.1 1.6 17 36-52 96-112 (184)
25 cd08393 C2A_SLP-1_2 C2 domain 24.7 1.2E+02 0.0025 20.6 3.4 22 33-54 3-24 (125)
26 cd04035 C2A_Rabphilin_Doc2 C2 24.5 1.2E+02 0.0026 20.2 3.4 22 33-54 3-24 (123)
27 PF15065 NCU-G1: Lysosomal tra 24.1 1.1E+02 0.0023 25.6 3.6 35 76-111 279-313 (350)
28 smart00736 CADG Dystroglycan-t 23.5 81 0.0017 20.6 2.4 24 26-49 36-59 (97)
29 PF12248 Methyltransf_FA: Farn 22.2 2.4E+02 0.0053 18.6 6.3 46 28-83 49-94 (102)
30 cd08392 C2A_SLP-3 C2 domain fi 22.2 1.4E+02 0.0029 20.6 3.4 22 33-54 3-24 (128)
31 PF08869 XisI: XisI protein; 22.2 66 0.0014 22.5 1.8 20 24-46 59-78 (111)
32 cd04030 C2C_KIAA1228 C2 domain 21.3 1.4E+02 0.0031 19.7 3.4 21 33-53 4-24 (127)
33 cd08385 C2A_Synaptotagmin-1-5- 20.3 1.7E+02 0.0036 19.4 3.5 22 33-54 4-25 (124)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=99.93 E-value=1.5e-25 Score=173.53 Aligned_cols=96 Identities=43% Similarity=0.670 Sum_probs=87.1
Q ss_pred CccCCccccceeecCcccCCCCccceeecCCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeE
Q 047244 1 ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYR 80 (125)
Q Consensus 1 IdiNsv~S~~t~~~~~~~~~~~~~~~~l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~V 80 (125)
||||++.|..+..+.. ..+.|.+|+.++|||+||+.+++|+|+|...+..+|..|+|+..+||+++|+++|||
T Consensus 140 Idvn~~~S~~~~~~~~-------~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~v 212 (236)
T cd06899 140 IDVNSLVSVKAGYWDD-------DGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYV 212 (236)
T ss_pred EEcCCcccceeecccc-------ccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEE
Confidence 6899998888877652 245578999999999999999999999998876688899999999999999999999
Q ss_pred EEEeecCCceeeeEEEeEEEEeC
Q 047244 81 GFSASTGLITASHNVHGWSISIG 103 (125)
Q Consensus 81 GFSAsTG~~~e~h~i~sWsF~~~ 103 (125)
||||+||...|.|+|++|+|+++
T Consensus 213 GFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 213 GFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred EEEeEcCCCcceEEEEEEEEEcC
Confidence 99999999999999999999875
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=99.89 E-value=1.6e-23 Score=161.78 Aligned_cols=96 Identities=35% Similarity=0.568 Sum_probs=81.8
Q ss_pred CccCCccccceeecCcccCCCCccceeecCCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeE
Q 047244 1 ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYR 80 (125)
Q Consensus 1 IdiNsv~S~~t~~~~~~~~~~~~~~~~l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~V 80 (125)
||+|++.|..+.+++++. ....+|.+|+.++|||+||+.+++|+|++.... .+|..|+|+..+||+++|+++|||
T Consensus 141 I~~n~~~s~~~~~~~~~~----~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~v 215 (236)
T PF00139_consen 141 IDVNSVVSNKTASAGYYS----SPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVYV 215 (236)
T ss_dssp EEESSSSESEEEE----E----EEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEEE
T ss_pred EECCCCcccccccccccc----cccccccCCcEEEEEEEEcCCccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcEE
Confidence 688999998887765431 235678899999999999999999999999985 478889999999999999999999
Q ss_pred EEEeecCCceeeeEEEeEEEE
Q 047244 81 GFSASTGLITASHNVHGWSIS 101 (125)
Q Consensus 81 GFSAsTG~~~e~h~i~sWsF~ 101 (125)
|||||||...|.|.|++|+|+
T Consensus 216 GFsasTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 216 GFSASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp EEEEEESSSSEEEEEEEEEEE
T ss_pred EEEeecCCCcceEEEEEEEeC
Confidence 999999999999999999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=99.74 E-value=8.4e-18 Score=128.27 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=64.7
Q ss_pred CCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeEEEEeecCCceeeeEEEeEEEE
Q 047244 31 GDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSIS 101 (125)
Q Consensus 31 G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~VGFSAsTG~~~e~h~i~sWsF~ 101 (125)
|+.++|||+||+.+++|+|+|..... |..|+++.++||+++++++||||||||||...+.|.|++|+|+
T Consensus 154 g~~~~v~I~Y~~~~~~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~ 222 (223)
T cd01951 154 GNEHTVRITYDPTTNTLTVYLDNGST--LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFT 222 (223)
T ss_pred CCEEEEEEEEeCCCCEEEEEECCCCc--cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEec
Confidence 89999999999999999999987653 6678999999999999999999999999999999999999996
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=98.41 E-value=1.7e-06 Score=65.87 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=49.1
Q ss_pred CCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeEEEEeecCCceeeeEEEeEEEE
Q 047244 31 GDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSIS 101 (125)
Q Consensus 31 G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~VGFSAsTG~~~e~h~i~sWsF~ 101 (125)
++.++++|.|+ .+.|.|.+.... +....+...++.- .+++..|+||||+||...+.|.|++|.+.
T Consensus 152 ~~~~~~~I~y~--~~~l~v~i~~~~---~~~~~~c~~~~~~-~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 152 NAPTTLRISYL--NNTLKVDITYSE---GNNWKECFTVEDV-ILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred CCCeEEEEEEE--CCEEEEEEeCCC---CCCccEEEEcCCc-ccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 57899999999 678999997542 1122233333322 46789999999999999999999999874
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=98.10 E-value=2.4e-05 Score=60.71 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=47.1
Q ss_pred CCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCc-cCCCeeeEEEEeecCCceeeeEEEeEEEEe
Q 047244 31 GDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSL-VLDEYMYRGFSASTGLITASHNVHGWSISI 102 (125)
Q Consensus 31 G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~-~L~e~v~VGFSAsTG~~~e~h~i~sWsF~~ 102 (125)
+.+.++.|.|.. +.|+|.+.... ++.......-+++.+ .||+..|+||||+||...+.|+|++|.|.+
T Consensus 155 ~~p~~~rI~Y~~--~~l~V~~d~~~--~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 155 PYPVRAKITYYQ--NVLTVSINNGF--TPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred CCCeEEEEEEEC--CeEEEEEeCCc--CCCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 467899999998 46888886322 122111111122223 467889999999999999999999999863
No 6
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=97.10 E-value=0.0039 Score=48.11 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceee-eeecCCccCC-CeeeEEEEeecCCceeeeEEEeEEEE
Q 047244 30 SGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLIS-FPIDLSLVLD-EYMYRGFSASTGLITASHNVHGWSIS 101 (125)
Q Consensus 30 ~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls-~~vdLs~~L~-e~v~VGFSAsTG~~~e~h~i~sWsF~ 101 (125)
.+.+.++.|.|....+.|+|.+.. +.++. ..+. || ...|+||||+||...+.|.|++-.+.
T Consensus 150 ~~~p~~iri~Y~~~~~~l~v~vd~-------~~Cf~~~~v~----lP~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 150 SGVPSTIRLSYDALNSLFKVQVDN-------RLCFQTDKVQ----LPQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred CCCCEEEEEEEECCCCEEEEEECC-------CEEEecCCee----cCCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 355788999998877788887732 12332 2333 45 55679999999999999999986653
No 7
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=96.80 E-value=0.0027 Score=49.13 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=42.7
Q ss_pred CCcEEEEEEEcCCCCEEEEEEEeC--CCCCCCCceeee-eecCCccCCCeeeEEEEeecCCceeeeEEEeEE
Q 047244 31 GDPIRAWVDYSSQEMLIKVSKSPL--GVPKPRRPLISF-PIDLSLVLDEYMYRGFSASTGLITASHNVHGWS 99 (125)
Q Consensus 31 G~~~~awI~Yd~~~~~L~V~l~~~--~~~~p~~p~ls~-~vdLs~~L~e~v~VGFSAsTG~~~e~h~i~sWs 99 (125)
+...++.|.|... .|.|.+... .....-..++.. .| .||+.-|+||||+||...+.|.|++-.
T Consensus 159 ~~p~~~ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v----~LP~~~yfGvSA~Tg~~~d~hdi~s~~ 224 (229)
T PF03388_consen 159 DVPTRIRISYSKN--TLTVSIDSNYLKNQDDWELCFTTDGV----DLPEGYYFGVSAATGELSDNHDILSVK 224 (229)
T ss_dssp SSEEEEEEEEETT--EEEEEEETSCCSECCTTEEEEEESTE----EGGSSBEEEEEEEESSSGGEEEEEEEE
T ss_pred CCCEEEEEEEECC--eEEEEEecccccCCcCCcEEEEcCCe----ecCCCCEEEEEecCCCCCCcEEEEEEE
Confidence 4577899999975 577766532 111112233332 23 467888999999999999999999853
No 8
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=96.64 E-value=0.013 Score=46.05 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeEEEEeecCCceeeeEEEeEEEEe
Q 047244 31 GDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISI 102 (125)
Q Consensus 31 G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~VGFSAsTG~~~e~h~i~sWsF~~ 102 (125)
+....++|.|... .|.|.+...+... -..++. ++ .-.||...|+||||+||...+.|.|++-.+..
T Consensus 157 ~~~t~~rI~Y~~~--~l~v~vd~~~~~~-w~~Cf~--~~-~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~ 222 (248)
T cd06901 157 DHDTFVAIRYSKG--RLTVMTDIDGKNE-WKECFD--VT-GVRLPTGYYFGASAATGDLSDNHDIISMKLYE 222 (248)
T ss_pred CCCeEEEEEEECC--eEEEEEecCCCCc-eeeeEE--eC-CeecCCCCEEEEEecCCCCCCcEEEEEEEEec
Confidence 4457899999964 5777776433111 012222 11 22467779999999999988999999876653
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.054 Score=45.72 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=47.2
Q ss_pred cEEEEEEEcCCCCEEEEEEEeCCCCCCC-CceeeeeecCCc-cCCCeeeEEEEeecCCceeeeEEEeE-EEEeCC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPLGVPKPR-RPLISFPIDLSL-VLDEYMYRGFSASTGLITASHNVHGW-SISIGG 104 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~~~~~p~-~p~ls~~vdLs~-~L~e~v~VGFSAsTG~~~e~h~i~sW-sF~~~~ 104 (125)
++.|.|+|=+ ++|+|-+... . .|. ..-+.. +... +||..-|+|.||+||....-|+|++. .|+...
T Consensus 189 PvRarItY~~--nvLtv~innG-m-tp~d~yE~C~--rve~~~lp~nGyFGvSAATGgLADDHDVl~FltfsL~e 257 (497)
T KOG3838|consen 189 PVRARITYYG--NVLTVMINNG-M-TPSDDYEFCV--RVENLLLPPNGYFGVSAATGGLADDHDVLSFLTFSLSE 257 (497)
T ss_pred CceEEEEEec--cEEEEEEcCC-C-CCCCCcceeE--eccceeccCCCeeeeeecccccccccceeeeEEeeecC
Confidence 6889999986 6899888542 2 233 222333 3333 56889999999999999999999998 455543
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=0.34 Score=40.00 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCc-cCCCeeeEEEEeecCCceeeeEEEeEEE
Q 047244 34 IRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSL-VLDEYMYRGFSASTGLITASHNVHGWSI 100 (125)
Q Consensus 34 ~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~-~L~e~v~VGFSAsTG~~~e~h~i~sWsF 100 (125)
...-|.|+. +.|++.....+ |. ....-.+|.. .||.--|+|+||+||...+.|.|++=.+
T Consensus 212 t~~~iry~~--~~l~~~~dl~~---~~--~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 212 TLVVIRYEK--KTLSISIDLEG---PN--EWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred ceeEEEecC--CceEEEEecCC---Cc--eeeeeeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 457799998 56666665443 22 2233345555 5678889999999999999999988643
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=89.44 E-value=1.7 Score=34.64 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.7
Q ss_pred ccCCCeeeEEEEeecCCceeeeEEEeE
Q 047244 72 LVLDEYMYRGFSASTGLITASHNVHGW 98 (125)
Q Consensus 72 ~~L~e~v~VGFSAsTG~~~e~h~i~sW 98 (125)
.-+||..+++|++|||.+.-.|+|-..
T Consensus 225 ~avP~~f~lS~TgSTGgstN~HEIdnf 251 (255)
T cd06900 225 DAIPENFYLSFTGSTGGSTNTHEIDNF 251 (255)
T ss_pred CCCCccEEEEEEecCCCcccceeecce
Confidence 578999999999999999999998543
No 12
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.58 E-value=14 Score=22.53 Aligned_cols=22 Identities=9% Similarity=-0.156 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCEEEEEEEeCCC
Q 047244 35 RAWVDYSSQEMLIKVSKSPLGV 56 (125)
Q Consensus 35 ~awI~Yd~~~~~L~V~l~~~~~ 56 (125)
.|+|.|+..++...++....+.
T Consensus 6 iAk~~~~~~~~~W~lyw~~~~~ 27 (57)
T PF11225_consen 6 IAKLTFDKTTGCWKLYWMDHDG 27 (57)
T ss_pred eEEEEEeCCCCEEEEEEECCCC
Confidence 4999999999999999976553
No 13
>PF13619 KTSC: KTSC domain
Probab=40.46 E-value=37 Score=20.52 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCEEEEEEEe
Q 047244 35 RAWVDYSSQEMLIKVSKSP 53 (125)
Q Consensus 35 ~awI~Yd~~~~~L~V~l~~ 53 (125)
-..|.||..++.|.|.+..
T Consensus 6 I~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 6 IRSVGYDPETRTLEVEFKS 24 (60)
T ss_pred ccEEeECCCCCEEEEEEcC
Confidence 3569999999999999954
No 14
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=40.03 E-value=1.3e+02 Score=21.00 Aligned_cols=54 Identities=24% Similarity=0.211 Sum_probs=33.4
Q ss_pred EEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeEEEEeecC----CceeeeEEEeEE
Q 047244 39 DYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTG----LITASHNVHGWS 99 (125)
Q Consensus 39 ~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~VGFSAsTG----~~~e~h~i~sWs 99 (125)
.|++.++.++|.+...+ ||. ++.+..++|.. .++.|.=+|.- .....--+|-|-
T Consensus 49 ~l~Sg~Gkv~i~v~~ng--k~s-~l~~~q~~l~~----~~~~~ivgsEdGtD~DYND~ivvLnWp 106 (107)
T PF07472_consen 49 VLNSGSGKVRIEVTANG--KPS-KLRSSQNTLDG----KPYFGIVGSEDGTDNDYNDSIVVLNWP 106 (107)
T ss_dssp EEE-TTSEEEEEEEETT--EE--EEEEEEEEETT----TEEEEEEEEESSSSSSSBSEEEEEEES
T ss_pred EEecCCCeEEEEEEeCC--ccc-cceeeeeeccC----ceeEEEEEcccCCCCCcccEEEEEecc
Confidence 37888888888888776 554 36777777766 55555444432 244566777773
No 15
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=37.17 E-value=53 Score=22.34 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=18.9
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
.++..|.||....+|.|++-..
T Consensus 4 ~l~~sl~Y~~~~~~L~V~Vi~a 25 (124)
T cd08389 4 DLDVAFEYDPSARKLTVTVIRA 25 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEe
Confidence 4778899999999999998653
No 16
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=36.22 E-value=58 Score=21.78 Aligned_cols=21 Identities=10% Similarity=0.002 Sum_probs=18.2
Q ss_pred EEEEEEEcCCCCEEEEEEEeC
Q 047244 34 IRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 34 ~~awI~Yd~~~~~L~V~l~~~ 54 (125)
++..+.|+....+|.|++-..
T Consensus 3 i~~~l~y~~~~~~L~V~v~~a 23 (134)
T cd00276 3 LLLSLSYLPTAERLTVVVLKA 23 (134)
T ss_pred EEEEEEeeCCCCEEEEEEEEe
Confidence 778899999999999998653
No 17
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=35.37 E-value=62 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.9
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
++.+.+.||..+.+|.|++-..
T Consensus 2 ~l~~~l~y~~~~~~L~V~v~~a 23 (123)
T cd08390 2 RLWFSVQYDLEEEQLTVSLIKA 23 (123)
T ss_pred EEEEEEEECCCCCEEEEEEEEe
Confidence 3788899999999999998654
No 18
>PHA02104 hypothetical protein
Probab=34.09 E-value=26 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=13.3
Q ss_pred cCCCcEEEEEEEcCC
Q 047244 29 RSGDPIRAWVDYSSQ 43 (125)
Q Consensus 29 ~~G~~~~awI~Yd~~ 43 (125)
.+|+.+.|.|+|++.
T Consensus 56 ~~gkiynatidynak 70 (89)
T PHA02104 56 QNGKIYNATIDYNAK 70 (89)
T ss_pred hCCeEEeeEEccCce
Confidence 578999999999985
No 19
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=32.13 E-value=71 Score=21.79 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.2
Q ss_pred EEEEEEEcCCCCEEEEEEEeC
Q 047244 34 IRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 34 ~~awI~Yd~~~~~L~V~l~~~ 54 (125)
++..+.|+....+|.|.+-..
T Consensus 4 i~~sl~y~~~~~~L~V~Vi~a 24 (125)
T cd04029 4 ILFSLSYDYKTQSLNVHVKEC 24 (125)
T ss_pred EEEEEEEECCCCeEEEEEEEe
Confidence 788899999999999998653
No 20
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=30.59 E-value=66 Score=18.80 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=14.2
Q ss_pred EEEEcCCCCEEEEEE
Q 047244 37 WVDYSSQEMLIKVSK 51 (125)
Q Consensus 37 wI~Yd~~~~~L~V~l 51 (125)
||+||.....|-+++
T Consensus 2 ki~YD~~~D~lyi~l 16 (50)
T PF10049_consen 2 KIEYDPEADALYIRL 16 (50)
T ss_pred EeEEcCcCCEEEEEE
Confidence 799999999999999
No 21
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=30.12 E-value=88 Score=20.64 Aligned_cols=21 Identities=14% Similarity=0.111 Sum_probs=18.1
Q ss_pred EEEEEEEcCCCCEEEEEEEeC
Q 047244 34 IRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 34 ~~awI~Yd~~~~~L~V~l~~~ 54 (125)
++..+.|+....+|.|++-..
T Consensus 3 i~~~l~y~~~~~~L~V~v~~a 23 (123)
T cd08521 3 IEFSLSYNYKTGSLEVHIKEC 23 (123)
T ss_pred EEEEEEEeCCCCEEEEEEEEe
Confidence 678899999999999998654
No 22
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=27.06 E-value=95 Score=21.50 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=18.4
Q ss_pred EEEEEEEcCCCCEEEEEEEeC
Q 047244 34 IRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 34 ~~awI~Yd~~~~~L~V~l~~~ 54 (125)
+...+.|+....+|.|.+-..
T Consensus 4 i~~sl~y~~~~~~L~V~V~~a 24 (137)
T cd08409 4 IQISLTYNPTLNRLTVVVLRA 24 (137)
T ss_pred EEEEEEECCCCCeEEEEEEEe
Confidence 778899999999999998764
No 23
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=25.27 E-value=1.2e+02 Score=20.66 Aligned_cols=22 Identities=14% Similarity=0.091 Sum_probs=18.8
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
.+...+.|+....+|.|++-..
T Consensus 4 ~l~~~l~y~~~~~~L~V~Vi~a 25 (128)
T cd08388 4 TLFFSLRYNSEKKALLVNIIEC 25 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEEe
Confidence 4778899999999999998753
No 24
>COG4540 gpV Phage P2 baseplate assembly protein gpV [General function prediction only]
Probab=24.71 E-value=49 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=15.4
Q ss_pred EEEEEcCCCCEEEEEEE
Q 047244 36 AWVDYSSQEMLIKVSKS 52 (125)
Q Consensus 36 awI~Yd~~~~~L~V~l~ 52 (125)
||++||-+.++|.|...
T Consensus 96 a~~~YD~Aah~ltV~g~ 112 (184)
T COG4540 96 AAFEYDRAAHRLTVNGG 112 (184)
T ss_pred ccEEeehhcceEEEecC
Confidence 89999999999999765
No 25
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=24.66 E-value=1.2e+02 Score=20.62 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.6
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
.++..+.|+.....|.|++-..
T Consensus 3 ~i~~sl~y~~~~~~L~V~vi~a 24 (125)
T cd08393 3 SVQFALDYDPKLRELHVHVIQC 24 (125)
T ss_pred EEEEEEEEECCCCEEEEEEEEe
Confidence 3788899999999999998654
No 26
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=24.48 E-value=1.2e+02 Score=20.17 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=18.4
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
.++..+.||..+..|.|++-..
T Consensus 3 ~~~~~l~y~~~~~~L~V~v~~a 24 (123)
T cd04035 3 TLEFTLLYDPANSALHCTIIRA 24 (123)
T ss_pred EEEEEEEEeCCCCEEEEEEEEe
Confidence 3777899999999999998653
No 27
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=24.10 E-value=1.1e+02 Score=25.56 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=27.9
Q ss_pred CeeeEEEEeecCCceeeeEEEeEEEEeCCCCCCCCC
Q 047244 76 EYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLN 111 (125)
Q Consensus 76 e~v~VGFSAsTG~~~e~h~i~sWsF~~~~~~~~~~~ 111 (125)
..+.|-|.++++..+..+..++|+|.... -.|+.|
T Consensus 279 ~~~nvSFG~~gDgfY~~t~ylsWt~~~G~-G~PP~d 313 (350)
T PF15065_consen 279 QGLNVSFGTSGDGFYWATNYLSWTFLIGY-GSPPVD 313 (350)
T ss_pred EEEEEEeccCCCCcccccceEEEEEeccc-CCCCcc
Confidence 34888898888888999999999999875 255544
No 28
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=23.48 E-value=81 Score=20.56 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=16.3
Q ss_pred eeecCCCcEEEEEEEcCCCCEEEE
Q 047244 26 ILLRSGDPIRAWVDYSSQEMLIKV 49 (125)
Q Consensus 26 ~~l~~G~~~~awI~Yd~~~~~L~V 49 (125)
+.+.+|...-.|+.||+.+..|.=
T Consensus 36 ~~~~~~~~lP~Wl~fd~~~~~~~G 59 (97)
T smart00736 36 ATLSDGSALPSWLSFDSDTGTLSG 59 (97)
T ss_pred EEeCCCCCCCCeEEEeCCCCEEEE
Confidence 334455556789999998766654
No 29
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=22.22 E-value=2.4e+02 Score=18.60 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=28.5
Q ss_pred ecCCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeEEEE
Q 047244 28 LRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFS 83 (125)
Q Consensus 28 l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~VGFS 83 (125)
|+..+...-||++++ ..++|... + ...|+|+.. |-. -..--||||+
T Consensus 49 ls~~e~~~fwI~~~~--G~I~vg~~--g---~~~pfl~~~-Dp~--~~~v~yvGft 94 (102)
T PF12248_consen 49 LSPSEFRMFWISWRD--GTIRVGRG--G---EDEPFLEWT-DPE--PIPVNYVGFT 94 (102)
T ss_pred CCCCccEEEEEEECC--CEEEEEEC--C---CccEEEEEE-CCC--CCcccEEEEe
Confidence 355677888999665 45666553 2 235777765 222 3456789993
No 30
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=22.18 E-value=1.4e+02 Score=20.60 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=18.7
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
.++..+.|+....+|.|.+-..
T Consensus 3 ~i~~sl~Y~~~~~~L~V~V~~a 24 (128)
T cd08392 3 EIEFALHYNFRTSCLEITIKAC 24 (128)
T ss_pred EEEEEEEEeCCCCEEEEEEEec
Confidence 3788899999999999998653
No 31
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=22.17 E-value=66 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=15.0
Q ss_pred cceeecCCCcEEEEEEEcCCCCE
Q 047244 24 IPILLRSGDPIRAWVDYSSQEML 46 (125)
Q Consensus 24 ~~~~l~~G~~~~awI~Yd~~~~~ 46 (125)
.-+++.+|+ .||.+|+...-
T Consensus 59 iH~dI~dgK---IWIq~d~TE~g 78 (111)
T PF08869_consen 59 IHLDIKDGK---IWIQRDGTEDG 78 (111)
T ss_dssp EEEEEETTE---EEEEEESSSSH
T ss_pred EEEEEECCe---EEEEcCchhhH
Confidence 356777887 99999997543
No 32
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=21.33 E-value=1.4e+02 Score=19.71 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.9
Q ss_pred cEEEEEEEcCCCCEEEEEEEe
Q 047244 33 PIRAWVDYSSQEMLIKVSKSP 53 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~ 53 (125)
.++..+.|++..++|.|++-.
T Consensus 4 ~l~~~l~y~~~~~~L~V~vi~ 24 (127)
T cd04030 4 RIQLTIRYSSQRQKLIVTVHK 24 (127)
T ss_pred EEEEEEEEeCCCCEEEEEEEE
Confidence 377889999999999999854
No 33
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=20.26 E-value=1.7e+02 Score=19.42 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.7
Q ss_pred cEEEEEEEcCCCCEEEEEEEeC
Q 047244 33 PIRAWVDYSSQEMLIKVSKSPL 54 (125)
Q Consensus 33 ~~~awI~Yd~~~~~L~V~l~~~ 54 (125)
.+...++|+.....|.|++-..
T Consensus 4 ~l~~~l~y~~~~~~L~V~v~~a 25 (124)
T cd08385 4 KLQFSLDYDFQSNQLTVGIIQA 25 (124)
T ss_pred EEEEEEEEeCCCCEEEEEEEEe
Confidence 4778899999999999998754
Done!