BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047246
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SDO|A Chain A, Crystal Structure Of Restriction Endonuclease Bstyi
 pdb|1VRR|A Chain A, Crystal Structure Of The Restriction Endonuclease Bstyi
           Complex With Dna
 pdb|1VRR|B Chain B, Crystal Structure Of The Restriction Endonuclease Bstyi
           Complex With Dna
 pdb|2P0J|A Chain A, Structure Of Restriction Endonuclease Bstyi Bound To
           Non-Cognate Dna
 pdb|2P0J|B Chain B, Structure Of Restriction Endonuclease Bstyi Bound To
           Non-Cognate Dna
          Length = 203

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 37  DERKDLVWADRAIHVSAANQTKYTRGRVYVHGWFAKH-FLHPDIVAEYNYIFLWDE-DIG 94
           +E+K ++ A     + + NQT + + RV +   F K+ F+  D+  ++   ++ D+ D+G
Sbjct: 98  EEQKKVIEAAGKEALKSYNQTDFVKDRVAIEVQFGKYSFVAYDLFVKHMAFYVSDKIDVG 157

Query: 95  VAIFNPRQYLS 105
           V I  P + LS
Sbjct: 158 VEIL-PMKELS 167


>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
           Dehydrogenase With Bound 6-Phosphogluconate
 pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
           Dehydrogenase With Bound 6-Phosphogluconate
          Length = 470

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)

Query: 102 QYLSIVKDEGLEISQ----PALDPFKSEVHHLITARRR 135
           ++LS +KDE ++ S+    PA+ PF+ +  H I A RR
Sbjct: 288 RFLSAMKDERVKASKVLAGPAVKPFEGDRAHFIEAVRR 325


>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
           Dehydrogenase With Bound 6-Phosphogluconate
 pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
           Dehydrogenase With Bound 6-Phosphogluconate
          Length = 471

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)

Query: 102 QYLSIVKDEGLEISQ----PALDPFKSEVHHLITARRR 135
           ++LS +KDE ++ S+    PA+ PF+ +  H I A RR
Sbjct: 289 RFLSAMKDERVKASKVLAGPAVKPFEGDRAHFIEAVRR 326


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,672,976
Number of Sequences: 62578
Number of extensions: 299607
Number of successful extensions: 689
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 3
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)