Query 047246
Match_columns 252
No_of_seqs 117 out of 124
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 3E-107 7E-112 741.8 17.7 213 1-235 42-293 (294)
2 PF12621 DUF3779: Phosphate me 72.6 6.1 0.00013 31.1 4.0 54 70-128 32-87 (95)
3 cd04185 GT_2_like_b Subfamily 62.0 6.6 0.00014 31.6 2.4 38 81-118 78-115 (202)
4 TIGR01556 rhamnosyltran L-rham 56.0 9.1 0.0002 33.2 2.3 39 81-119 72-112 (281)
5 cd06434 GT2_HAS Hyaluronan syn 54.2 7.4 0.00016 31.9 1.5 41 81-121 76-116 (235)
6 PF01762 Galactosyl_T: Galacto 53.7 23 0.00051 29.7 4.4 94 66-182 70-165 (195)
7 COG1216 Predicted glycosyltran 52.8 21 0.00046 31.9 4.3 39 83-121 85-123 (305)
8 PF00535 Glycos_transf_2: Glyc 48.6 16 0.00034 27.2 2.3 35 81-115 77-111 (169)
9 cd06421 CESA_CelA_like CESA_Ce 48.5 15 0.00032 29.9 2.4 38 81-118 83-121 (234)
10 cd04186 GT_2_like_c Subfamily 47.3 19 0.00042 27.1 2.7 27 82-108 74-100 (166)
11 cd02525 Succinoglycan_BP_ExoA 45.9 16 0.00036 29.8 2.2 38 81-118 80-117 (249)
12 PF13641 Glyco_tranf_2_3: Glyc 45.8 9.4 0.0002 31.3 0.8 40 81-120 85-124 (228)
13 cd02510 pp-GalNAc-T pp-GalNAc- 43.2 23 0.0005 31.2 2.9 41 81-121 82-122 (299)
14 cd06435 CESA_NdvC_like NdvC_li 43.1 14 0.00031 30.5 1.5 37 82-118 84-120 (236)
15 PF12996 DUF3880: DUF based on 39.2 14 0.0003 27.7 0.8 25 77-111 13-37 (79)
16 PF02434 Fringe: Fringe-like; 39.2 40 0.00086 30.4 3.8 105 81-213 85-192 (252)
17 cd02520 Glucosylceramide_synth 34.7 31 0.00067 28.1 2.2 27 81-107 85-111 (196)
18 cd04195 GT2_AmsE_like GT2_AmsE 34.6 36 0.00077 27.2 2.5 38 81-118 79-117 (201)
19 cd06437 CESA_CaSu_A2 Cellulose 34.1 24 0.00051 29.4 1.5 38 81-118 86-123 (232)
20 cd00761 Glyco_tranf_GTA_type G 29.6 47 0.001 23.8 2.2 37 82-118 77-114 (156)
21 PF03314 DUF273: Protein of un 29.4 38 0.00081 31.4 2.0 36 69-104 27-65 (222)
22 cd06423 CESA_like CESA_like is 29.2 32 0.0007 25.3 1.3 22 82-103 78-99 (180)
23 cd02526 GT2_RfbF_like RfbF is 27.6 51 0.0011 27.0 2.4 23 82-104 75-97 (237)
24 cd02522 GT_2_like_a GT_2_like_ 26.0 48 0.001 26.8 1.9 41 81-121 71-111 (221)
25 cd04196 GT_2_like_d Subfamily 25.7 54 0.0012 26.1 2.1 26 81-106 78-103 (214)
26 PF06099 Phenol_hyd_sub: Pheno 25.6 1E+02 0.0022 23.3 3.4 42 115-171 1-42 (59)
27 cd06433 GT_2_WfgS_like WfgS an 25.2 77 0.0017 24.6 2.9 27 81-107 74-100 (202)
28 cd04184 GT2_RfbC_Mx_like Myxoc 25.2 56 0.0012 26.0 2.1 36 81-116 82-118 (202)
29 cd04190 Chitin_synth_C C-termi 24.0 99 0.0022 26.6 3.6 64 22-108 35-99 (244)
30 COG3040 Blc Bacterial lipocali 23.9 62 0.0013 29.0 2.3 32 84-115 133-164 (174)
31 PF13506 Glyco_transf_21: Glyc 23.5 56 0.0012 27.6 1.9 24 81-104 30-53 (175)
32 cd06439 CESA_like_1 CESA_like_ 22.6 46 0.001 27.7 1.2 38 82-119 109-146 (251)
33 cd04192 GT_2_like_e Subfamily 22.5 66 0.0014 25.9 2.1 33 81-113 81-113 (229)
34 PF07862 Nif11: Nitrogen fixat 20.7 63 0.0014 22.0 1.4 22 97-118 26-47 (49)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=3.4e-107 Score=741.77 Aligned_cols=213 Identities=60% Similarity=1.016 Sum_probs=207.6
Q ss_pred Cceeeeeeccccccccccc--CCCCCeEEEEEEEcCcccccccccccCceEEEEeecccccccccccchhhhhhcccCcc
Q 047246 1 MNLLAIAVGIKQKKIVDQI--FPSKDFVVMLFYYYGVVDERKDLVWADRAIHVSAANQTKYTRGRVYVHGWFAKHFLHPD 78 (252)
Q Consensus 1 ~~Lla~~VG~kqk~~Vd~~--f~~~nF~vmLFhYDg~vd~w~d~ews~~aiHv~a~~qtKw~~~~~~~~~wfaKrfLHPd 78 (252)
+||||||||||||++||++ ++++|||||||||||+||+|++||||++||||+++||||| ||||||||||
T Consensus 42 k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKw---------w~akrfLHPd 112 (294)
T PF05212_consen 42 KYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKW---------WFAKRFLHPD 112 (294)
T ss_pred ceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcCchhhcccccceEEEEeccceEE---------eehhhhcChh
Confidence 6999999999999999999 3399999999999999999999999999999999999999 9999999999
Q ss_pred ccccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeccCcccceeeccccCCCCCCCCCCC
Q 047246 79 IVAEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDPFKSEVHHLITARRRNSKAHRRIYKFKASGRCDDYSTA 158 (252)
Q Consensus 79 iV~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~c~~~~~~ 158 (252)
||++|||||||||||+||||+|+|||+||+++||||||||||+++|++||+||+|++++++|| +.+++++|.++||+
T Consensus 113 iv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr---~~~~~~~~~~~~~~ 189 (294)
T PF05212_consen 113 IVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHR---KTRGGPRCCDDSTG 189 (294)
T ss_pred hhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEe---ccCCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 45778899999999
Q ss_pred CCcceeEeeeccccchhHHHhhhhcccccCCcccCCCCCCccccccccchhhHHH-------------------------
Q 047246 159 PPCIGWVEMMAPVFSKAAWRCRRSRFCLQSSYCSDFVNDLIHTCGLDVQLRYCAQ------------------------- 213 (252)
Q Consensus 159 ppctgfVEvMAPVFSR~AWrCvw~~f~~~s~~~~miQNDLvhGWGLD~~~~~Ca~------------------------- 213 (252)
||||||||||||||||+||||||| ||||||+|||||||+|+||+.
T Consensus 190 ppct~fVEiMAPVFSr~Awrcvw~----------miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH~gvptLG~~ 259 (294)
T PF05212_consen 190 PPCTGFVEIMAPVFSRAAWRCVWH----------MIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVHTGVPTLGGQ 259 (294)
T ss_pred CCcceEEEEecceechHHHHHHHh----------cccCCCccccchhhhHHHHhccccccEEEEeeEEEEEcCCCcCCCc
Confidence 999999999999999999999999 999999999999999999997
Q ss_pred ------------HHHhhHHHHHHHHHHHhhhhhc
Q 047246 214 ------------VRRQSYIKMQISRNRWKHSVED 235 (252)
Q Consensus 214 ------------vr~~~~~e~~~f~~Rw~~a~~~ 235 (252)
||+||+.||++|++||++|+++
T Consensus 260 ~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~ 293 (294)
T PF05212_consen 260 GNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKE 293 (294)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999986
No 2
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=72.61 E-value=6.1 Score=31.06 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=42.2
Q ss_pred hhhcccCccccccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC--cCCCCCceee
Q 047246 70 FAKHFLHPDIVAEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPA--LDPFKSEVHH 128 (252)
Q Consensus 70 faKrfLHPdiV~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPA--Ld~~~s~~~h 128 (252)
-..-|+||.+.++---|||+-|++||-. +=++-.++.|+.||.-+ ||. +|.+.+
T Consensus 32 ~~~ay~~Pa~~~~~P~lWIP~D~~GvS~----~ei~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 32 HKHAYLHPAVSAPQPILWIPRDPLGVSR----QEIEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred HHhccCCHhHcCCCCeEEeecCCCCCCH----HHHHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 4567999999999999999999999964 44556778888888765 565 355554
No 3
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.98 E-value=6.6 Score=31.64 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.8
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPA 118 (252)
+.+||+++.|+|..++.--.++.++.+++.++.+..|.
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 115 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPL 115 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecce
Confidence 57999999999999987777777777765555554443
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=55.96 E-value=9.1 Score=33.18 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=31.5
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHh--CCcccCCCc
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDE--GLEISQPAL 119 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~--gLeISQPAL 119 (252)
..+|||++.|+|..++.-.+++.++.+++. ++-+..|.+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 112 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF 112 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE
Confidence 379999999999999877788888887765 566777764
No 5
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=54.22 E-value=7.4 Score=31.92 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=34.1
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDP 121 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~ 121 (252)
+.+|||++.|.|..++.-.+++.++.+...++.+.++.+..
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999998888888888877777777776543
No 6
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=53.69 E-value=23 Score=29.69 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=53.4
Q ss_pred chhhhhhcccCccccccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeccCcc--cceee
Q 047246 66 VHGWFAKHFLHPDIVAEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDPFKSEVHHLITARRRNSK--AHRRI 143 (252)
Q Consensus 66 ~~~wfaKrfLHPdiV~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~~~s~~~h~iT~R~~~~~--vHr~~ 143 (252)
.++|..+.+ ..++||+.-|||+-| ++.++++..++.-.+.+.+.+... .....-..|++.++ +....
T Consensus 70 ~~~w~~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~ 138 (195)
T PF01762_consen 70 GLKWASKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEE 138 (195)
T ss_pred HHHHHHhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeee
Confidence 445776655 358999999999988 566777777666334444444332 12222234444443 22222
Q ss_pred ccccCCCCCCCCCCCCCcceeEeeeccccchhHHHhhhh
Q 047246 144 YKFKASGRCDDYSTAPPCIGWVEMMAPVFSKAAWRCRRS 182 (252)
Q Consensus 144 ~~~~~~~~c~~~~~~ppctgfVEvMAPVFSR~AWrCvw~ 182 (252)
|. ....||.. .+.+=++|+++-+.+-.
T Consensus 139 y~---------~~~yP~y~---~G~~yvls~~~v~~i~~ 165 (195)
T PF01762_consen 139 YP---------DDYYPPYC---SGGGYVLSSDVVKRIYK 165 (195)
T ss_pred cc---------cccCCCcC---CCCeEEecHHHHHHHHH
Confidence 21 12344433 35666788888887776
No 7
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=52.80 E-value=21 Score=31.94 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.6
Q ss_pred ceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCC
Q 047246 83 YNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDP 121 (252)
Q Consensus 83 YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~ 121 (252)
|+|+++++.|.-++.-.++++++.+++.+-...=|++-.
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 123 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEe
Confidence 449999999999999999999999999987777666544
No 8
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=48.60 E-value=16 Score=27.15 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=27.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCccc
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEIS 115 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeIS 115 (252)
+..+||++.|+|..++.-..+++++.+++.+-.+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~ 111 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVV 111 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEE
Confidence 56679999999999988899999999999666443
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=48.47 E-value=15 Score=29.91 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=31.3
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHH-hCCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKD-EGLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~-~gLeISQPA 118 (252)
+.+|||.+.|.|..++.-.++++++.+.+ .++.+.++.
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 48999999999999988888888888877 666666654
No 10
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.30 E-value=19 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=21.5
Q ss_pred cceEEEeeccccccCCCChHHHHHHHH
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQYLSIVK 108 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ryl~Ivk 108 (252)
.+|||++.|+|..++.....++++.+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~ 100 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAE 100 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHH
Confidence 799999999999887766666666443
No 11
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=45.93 E-value=16 Score=29.78 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=30.0
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPA 118 (252)
+.+|||.+.|+|..++.-..++.++..++.+..+.++.
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 117 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGP 117 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecc
Confidence 37999999999999887778888877777776665544
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=45.83 E-value=9.4 Score=31.26 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.5
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALD 120 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd 120 (252)
+.+|||++.|+|..++.-.++++++.+...+..+-++...
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~ 124 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVF 124 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEE
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEe
Confidence 4599999999999999888999999987778887776653
No 13
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=43.22 E-value=23 Score=31.18 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.5
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDP 121 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~ 121 (252)
+..|||.+.|.|..++.--++++++.+.+....+.-|.++.
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~ 122 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDV 122 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeecc
Confidence 67899999999999998889999999988877777776653
No 14
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=43.13 E-value=14 Score=30.46 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=28.6
Q ss_pred cceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPA 118 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPA 118 (252)
.||||.+.|.|..++.-.+.+.++.+++.+..+.++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 3999999999998887777777777765566665543
No 15
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=39.19 E-value=14 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.7
Q ss_pred ccccccceEEEeeccccccCCCChHHHHHHHHHhC
Q 047246 77 PDIVAEYNYIFLWDEDIGVAIFNPRQYLSIVKDEG 111 (252)
Q Consensus 77 PdiV~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~g 111 (252)
..+...|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4788999999999975 456667777
No 16
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=39.17 E-value=40 Score=30.38 Aligned_cols=105 Identities=19% Similarity=0.121 Sum_probs=49.2
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCCCCCceeeeeeeeccCcccceeeccccCCCCCCCCCCCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDPFKSEVHHLITARRRNSKAHRRIYKFKASGRCDDYSTAPP 160 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~c~~~~~~pp 160 (252)
..++++++-|||.-| ++++.+++...+. -+||-.=... ...++++.- |+--+ .+ ..+.
T Consensus 85 ~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~-~~~~~~~~~------~~~~~-~~---------~~~~ 142 (252)
T PF02434_consen 85 SDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRP-SGDRPIEII------HRFNP-NK---------SKDS 142 (252)
T ss_dssp HT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-E-E-----------------------------------
T ss_pred CCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeee-ccCccceee------ccccc-cc---------cCcC
Confidence 467999999999987 6667777666433 3344221111 111222221 00000 00 0011
Q ss_pred cceeEeeec-cccchhHHHhh--hhcccccCCcccCCCCCCccccccccchhhHHH
Q 047246 161 CIGWVEMMA-PVFSKAAWRCR--RSRFCLQSSYCSDFVNDLIHTCGLDVQLRYCAQ 213 (252)
Q Consensus 161 ctgfVEvMA-PVFSR~AWrCv--w~~f~~~s~~~~miQNDLvhGWGLD~~~~~Ca~ 213 (252)
+-.|.-+-| =|+||+|-+.+ |.. .|+.++++-.-.+.=|..+|+|.+
T Consensus 143 ~~~f~~GGaG~vlSr~~~~k~~~~~~------~~~~~~~~~~~~~~dD~~lG~ci~ 192 (252)
T PF02434_consen 143 GFWFATGGAGYVLSRALLKKMSPWAS------GCKCPSTDEKIRLPDDMTLGYCIE 192 (252)
T ss_dssp ---EE-GGG-EEEEHHHHHHHHHHHT------T-TTS--TTTTTS-HHHHHHHHHH
T ss_pred ceEeeCCCeeHHHhHHHHHHHhhhcc------cccccCCcCCCCCcccChhhhhHH
Confidence 122333222 46999999998 653 344667765567788999999976
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=34.73 E-value=31 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=19.8
Q ss_pred ccceEEEeeccccccCCCChHHHHHHH
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIV 107 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Iv 107 (252)
+.+|||++.|.|..++.--+++.++..
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHh
Confidence 679999999999877655555555443
No 18
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=34.62 E-value=36 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=27.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHh-CCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDE-GLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~-gLeISQPA 118 (252)
+.+|||++.|.|..++.-.+++.++.+.++ +..|..+.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 117 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEccc
Confidence 689999999999887766667777766543 55565554
No 19
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=34.12 E-value=24 Score=29.37 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=28.0
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPA 118 (252)
+.+|||++.|.|..++.-.+++...+....++.+.|+-
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~ 123 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTR 123 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecc
Confidence 58999999999999977777776666655555455543
No 20
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=29.59 E-value=47 Score=23.76 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=23.5
Q ss_pred cceEEEeeccccccCCCChHHH-HHHHHHhCCcccCCC
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQY-LSIVKDEGLEISQPA 118 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ry-l~Ivk~~gLeISQPA 118 (252)
.+||+++.|.|.-++.-..++. ....+..+..+.++.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc
Confidence 7999999999988866555555 222333344444443
No 21
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=29.44 E-value=38 Score=31.43 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=26.7
Q ss_pred hhhhcc-cCccccccceEEEeeccccccCCCC--hHHHH
Q 047246 69 WFAKHF-LHPDIVAEYNYIFLWDEDIGVAIFN--PRQYL 104 (252)
Q Consensus 69 wfaKrf-LHPdiV~~YdYiFlwDeDl~vd~f~--~~ryl 104 (252)
||-+|. .--.++..||+|++.|-|+||-|-+ +++|+
T Consensus 27 ~fFrRHCvva~~L~~~~~vlflDaDigVvNp~~~iEefi 65 (222)
T PF03314_consen 27 KFFRRHCVVAKILPEYDWVLFLDADIGVVNPNRRIEEFI 65 (222)
T ss_pred HHHHHHHHHHHHhccCCEEEEEcCCceeecCcccHHHhc
Confidence 555555 3346778999999999999997655 56665
No 22
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=29.22 E-value=32 Score=25.26 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=17.4
Q ss_pred cceEEEeeccccccCCCChHHH
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQY 103 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ry 103 (252)
.+|||.+.|+|..++.-.++++
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHH
Confidence 8999999999988865545555
No 23
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=27.57 E-value=51 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.2
Q ss_pred cceEEEeeccccccCCCChHHHH
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQYL 104 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ryl 104 (252)
.||||++.|+|..++.-..++++
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHH
Confidence 58999999999999866666664
No 24
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.96 E-value=48 Score=26.77 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=29.5
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPALDP 121 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPALd~ 121 (252)
+..|||.+.|.|..++.-.+++.+......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 34899999999998887777777666666666555555443
No 25
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.72 E-value=54 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=17.4
Q ss_pred ccceEEEeeccccccCCCChHHHHHH
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSI 106 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~I 106 (252)
+.+|||++.|+|..++.-.+.+.++.
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHH
Confidence 67999999999965543334444443
No 26
>PF06099 Phenol_hyd_sub: Phenol hydroxylase subunit; InterPro: IPR010353 This family consists of several bacterial phenol hydroxylase subunit proteins, which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates [].
Probab=25.61 E-value=1e+02 Score=23.32 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=24.9
Q ss_pred cCCCcCCCCCceeeeeeeeccCcccceeeccccCCCCCCCCCCCCCcceeEeeeccc
Q 047246 115 SQPALDPFKSEVHHLITARRRNSKAHRRIYKFKASGRCDDYSTAPPCIGWVEMMAPV 171 (252)
Q Consensus 115 SQPALd~~~s~~~h~iT~R~~~~~vHr~~~~~~~~~~c~~~~~~ppctgfVEvMAPV 171 (252)
+||++|..+-++ ++|-++.+..|--.. +-+-| .=|||+|.|-
T Consensus 1 ~~p~~d~~~ryV--Rv~~~~~~gfVEFeF------------aIG~P-eL~VELvLP~ 42 (59)
T PF06099_consen 1 SQPAFDQTRRYV--RVTGRRDDGFVEFEF------------AIGDP-ELFVELVLPR 42 (59)
T ss_pred CCCccccccCEE--EEecccCCCeEEEEE------------ecCCc-ceeEEecCCH
Confidence 689999875444 566666666553322 11111 2389999884
No 27
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.22 E-value=77 Score=24.57 Aligned_cols=27 Identities=11% Similarity=-0.108 Sum_probs=21.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHH
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIV 107 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Iv 107 (252)
+..|||++.|+|..++.-.+.+.++..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~ 100 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAF 100 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHH
Confidence 568999999999999877777777433
No 28
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.17 E-value=56 Score=26.01 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=26.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHH-HHhCCcccC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIV-KDEGLEISQ 116 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Iv-k~~gLeISQ 116 (252)
+.+|||++.|.|..++.-.+++.++.+ +..+..+-.
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~ 118 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIY 118 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEE
Confidence 568999999999988776677777776 444555543
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=24.03 E-value=99 Score=26.57 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=40.8
Q ss_pred CCCeEEEEEEEcCcccccccccccCceEEEEeecccccccccccchhhhhhcccCccc-cccceEEEeeccccccCCCCh
Q 047246 22 SKDFVVMLFYYYGVVDERKDLVWADRAIHVSAANQTKYTRGRVYVHGWFAKHFLHPDI-VAEYNYIFLWDEDIGVAIFNP 100 (252)
Q Consensus 22 ~~nF~vmLFhYDg~vd~w~d~ews~~aiHv~a~~qtKw~~~~~~~~~wfaKrfLHPdi-V~~YdYiFlwDeDl~vd~f~~ 100 (252)
..++.|++. -||..| .|..| .+-+.|+.+... ..+ .+.+|||.+.|.|..++.--+
T Consensus 35 ~~~~evivv-~Dgs~d----------------~~~gk-----~~~~~~~~~~~~-~~~~~a~~e~i~~~DaD~~~~~~~l 91 (244)
T cd04190 35 WKKIVVCVI-FDGAIK----------------KNRGK-----RDSQLWFFNYFC-RVLFPDDPEFILLVDADTKFDPDSI 91 (244)
T ss_pred ccEEEEEEE-eCCccc----------------ccCcc-----hHHHHHHHHHHH-HHhhcCCCCEEEEECCCCcCCHhHH
Confidence 357888777 899887 22222 123345433222 222 478999999999999977666
Q ss_pred HHHHHHHH
Q 047246 101 RQYLSIVK 108 (252)
Q Consensus 101 ~ryl~Ivk 108 (252)
.+.++.+.
T Consensus 92 ~~l~~~~~ 99 (244)
T cd04190 92 VQLYKAMD 99 (244)
T ss_pred HHHHHHHH
Confidence 66666653
No 30
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=62 Score=29.04 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=27.1
Q ss_pred eEEEeeccccccCCCChHHHHHHHHHhCCccc
Q 047246 84 NYIFLWDEDIGVAIFNPRQYLSIVKDEGLEIS 115 (252)
Q Consensus 84 dYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeIS 115 (252)
+|+||.---..+..-+.++|++++|+.|..++
T Consensus 133 ~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~ 164 (174)
T COG3040 133 EYLWLLSRTPTLSQETLKRMLEIAKRRGFDVS 164 (174)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 57777777777888888999999999999875
No 31
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=23.52 E-value=56 Score=27.57 Aligned_cols=24 Identities=33% Similarity=0.521 Sum_probs=18.3
Q ss_pred ccceEEEeeccccccCCCChHHHH
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYL 104 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl 104 (252)
+.||||++-|.|+.++.-...+.+
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv 53 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELV 53 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHH
Confidence 899999999999999643333333
No 32
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=22.58 E-value=46 Score=27.73 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=27.8
Q ss_pred cceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCc
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPAL 119 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPAL 119 (252)
..|||.+.|.|.-++.--..+.++.+...+..+.++..
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 146 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGEL 146 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEE
Confidence 45999999999999866677777777655555555443
No 33
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.53 E-value=66 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.4
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCc
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLE 113 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLe 113 (252)
+.+|||.+.|.|..++.--+++.++...+.+-.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 568999999999988766667777655544433
No 34
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.67 E-value=63 Score=22.00 Aligned_cols=22 Identities=14% Similarity=0.499 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHhCCcccCCC
Q 047246 97 IFNPRQYLSIVKDEGLEISQPA 118 (252)
Q Consensus 97 ~f~~~ryl~Ivk~~gLeISQPA 118 (252)
.-+++..++|++++|.++|..-
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHH
Confidence 3489999999999999998643
Done!