Query 047246
Match_columns 252
No_of_seqs 117 out of 124
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 16:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcv_A Putative glycosyltransf 49.7 11 0.00038 29.5 2.9 38 81-118 83-120 (240)
2 1qg8_A Protein (spore coat pol 37.5 17 0.00059 28.8 2.3 38 81-118 87-125 (255)
3 2c0n_A A197; thermophil protei 30.1 17 0.00058 31.8 1.2 31 81-115 52-85 (203)
4 2ffu_A Ppgalnact-2, polypeptid 28.1 27 0.00091 31.8 2.2 39 81-119 145-183 (501)
5 1xhb_A Polypeptide N-acetylgal 22.2 43 0.0015 29.9 2.4 39 81-119 113-151 (472)
6 3sd4_A PHD finger protein 20; 18.6 65 0.0022 22.6 2.2 15 27-41 42-56 (69)
7 1xki_A VON ebner'S gland prote 18.2 1.5E+02 0.005 22.6 4.4 36 81-116 104-139 (162)
8 4fix_A UDP-galactofuranosyl tr 17.8 49 0.0017 32.3 1.9 36 82-117 268-304 (657)
9 2le2_A P56; UDG inhibition, DN 16.7 39 0.0013 24.1 0.6 16 193-208 1-16 (56)
10 2nxv_A ATP synthase subunits r 16.7 85 0.0029 25.7 2.8 29 81-109 73-101 (249)
No 1
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=49.69 E-value=11 Score=29.54 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=30.8
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPA 118 (252)
+.-|||++.|+|..++.--.++.++.+++.+.++...+
T Consensus 83 a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 83 ATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp CCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred cCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 56799999999999988888999999988776665443
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=37.49 E-value=17 Score=28.82 Aligned_cols=38 Identities=16% Similarity=-0.012 Sum_probs=29.9
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHh-CCcccCCC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDE-GLEISQPA 118 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~-gLeISQPA 118 (252)
+..|||++.|+|..++.-..++.++.++++ +..+..+.
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEec
Confidence 578999999999999877788888888765 55555544
No 3
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=30.09 E-value=17 Score=31.84 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=21.7
Q ss_pred ccceEEEeeccc---cccCCCChHHHHHHHHHhCCccc
Q 047246 81 AEYNYIFLWDED---IGVAIFNPRQYLSIVKDEGLEIS 115 (252)
Q Consensus 81 ~~YdYiFlwDeD---l~vd~f~~~ryl~Ivk~~gLeIS 115 (252)
..|||+++.|.| ++.+.-++.|++ +.|.+|.
T Consensus 52 ~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV 85 (203)
T 2c0n_A 52 KDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV 85 (203)
T ss_dssp TTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence 469999999999 765544444454 5566664
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=28.15 E-value=27 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=34.0
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCc
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPAL 119 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPAL 119 (252)
+..|||++.|.|..++.--++++++.+++..-.+..|.+
T Consensus 145 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 145 AQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp CCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 568999999999999999999999999988776777764
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=22.20 E-value=43 Score=29.89 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=32.3
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCc
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQPAL 119 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQPAL 119 (252)
+..|||+|.|.|..++.--+++.++.+++..-.+.-|.+
T Consensus 113 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~ 151 (472)
T 1xhb_A 113 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPII 151 (472)
T ss_dssp CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeee
Confidence 568999999999999999999999999877655555554
No 6
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=18.64 E-value=65 Score=22.63 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=10.8
Q ss_pred EEEEEEcCccccccc
Q 047246 27 VMLFYYYGVVDERKD 41 (252)
Q Consensus 27 vmLFhYDg~vd~w~d 41 (252)
.+|.||||--+.|+.
T Consensus 42 ~~~VhfdGw~~~~D~ 56 (69)
T 3sd4_A 42 KVLIHFKRWNHRYDE 56 (69)
T ss_dssp EEEEEETTSCGGGCE
T ss_pred EEEEEeCCCCCCCCE
Confidence 369999997665653
No 7
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=18.24 E-value=1.5e+02 Score=22.63 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=27.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccC
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKDEGLEISQ 116 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~gLeISQ 116 (252)
..|.+++|.--...++.-..+++.+++++.||..+.
T Consensus 104 ~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~ 139 (162)
T 1xki_A 104 KPVRGVKLVGRDPKNNLEALEDFEKAAGARGLSTES 139 (162)
T ss_dssp CCEEEEEEEESSSSCCCCCHHHHHHHHHHTTCTTSC
T ss_pred eEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 345666777777777778889999999999986553
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=17.79 E-value=49 Score=32.25 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=28.8
Q ss_pred cceEEEeeccccccCCCChHHHHHHHHHh-CCcccCC
Q 047246 82 EYNYIFLWDEDIGVAIFNPRQYLSIVKDE-GLEISQP 117 (252)
Q Consensus 82 ~YdYiFlwDeDl~vd~f~~~ryl~Ivk~~-gLeISQP 117 (252)
.+|||+|.|+|..++.-.+++.++.++.. ..-+..|
T Consensus 268 ~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~ 304 (657)
T 4fix_A 268 DCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGG 304 (657)
T ss_dssp CCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEE
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEe
Confidence 68999999999999988888999888765 2334444
No 9
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=16.70 E-value=39 Score=24.12 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=12.7
Q ss_pred CCCCCCccccccccch
Q 047246 193 DFVNDLIHTCGLDVQL 208 (252)
Q Consensus 193 miQNDLvhGWGLD~~~ 208 (252)
|||||.+...-+-+.+
T Consensus 1 mvqndf~dsy~~t~ll 16 (56)
T 2le2_A 1 MVQNDFVDSYDVTMLL 16 (56)
T ss_dssp CCCSSSCSSEEEEEEE
T ss_pred CcccccccceeEEEEE
Confidence 7999999887776654
No 10
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=16.68 E-value=85 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=25.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHH
Q 047246 81 AEYNYIFLWDEDIGVAIFNPRQYLSIVKD 109 (252)
Q Consensus 81 ~~YdYiFlwDeDl~vd~f~~~ryl~Ivk~ 109 (252)
+.-|||+|.|.|..++.--+++.++.+++
T Consensus 73 A~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 73 CKGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp CCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 45799999999999988888999998876
Done!