BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047247
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 430 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 240 FARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERG 292
FAR GVPF++ TG R+ +G+ +D+ AV+ I L +A+ G
Sbjct: 434 FAR--GVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 484
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,195,359
Number of Sequences: 62578
Number of extensions: 310676
Number of successful extensions: 609
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 8
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)