Query 047247
Match_columns 386
No_of_seqs 134 out of 674
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 2.1E-95 5E-100 733.4 29.5 309 74-385 1-317 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.3 0.29 6.3E-06 46.7 16.9 130 159-313 34-167 (247)
3 PRK06202 hypothetical protein; 95.1 0.61 1.3E-05 43.8 13.7 110 179-309 56-165 (232)
4 TIGR02716 C20_methyl_CrtF C-20 94.7 1.1 2.4E-05 43.9 14.9 118 172-313 138-257 (306)
5 TIGR00740 methyltransferase, p 94.0 1.1 2.4E-05 42.3 12.7 106 183-309 53-159 (239)
6 PF13847 Methyltransf_31: Meth 93.8 0.38 8.2E-06 42.0 8.5 131 182-338 2-133 (152)
7 TIGR02752 MenG_heptapren 2-hep 93.6 3.7 7.9E-05 38.2 15.3 114 173-309 35-149 (231)
8 TIGR00477 tehB tellurite resis 93.4 0.52 1.1E-05 43.4 9.0 111 170-306 17-128 (195)
9 PLN02233 ubiquinone biosynthes 92.8 9.8 0.00021 36.7 18.2 121 172-311 62-183 (261)
10 PF13649 Methyltransf_25: Meth 92.7 0.37 7.9E-06 39.1 6.3 97 187-303 1-99 (101)
11 PRK12335 tellurite resistance 92.7 0.92 2E-05 44.3 10.1 108 174-307 111-219 (287)
12 TIGR03438 probable methyltrans 92.7 1.9 4.2E-05 42.5 12.4 119 174-310 56-176 (301)
13 PRK11207 tellurite resistance 92.5 1.3 2.8E-05 40.9 10.3 110 173-308 20-131 (197)
14 PF01209 Ubie_methyltran: ubiE 92.0 2.1 4.6E-05 40.8 11.5 116 174-311 38-154 (233)
15 PF09243 Rsm22: Mitochondrial 91.8 0.89 1.9E-05 44.4 8.9 138 167-330 13-156 (274)
16 smart00138 MeTrc Methyltransfe 91.4 1.4 2.9E-05 42.8 9.5 118 180-309 96-240 (264)
17 PF00891 Methyltransf_2: O-met 90.4 3 6.4E-05 39.3 10.7 112 173-316 90-205 (241)
18 PRK14103 trans-aconitate 2-met 90.1 3.8 8.3E-05 39.0 11.2 107 174-311 20-126 (255)
19 PLN02336 phosphoethanolamine N 89.7 5.7 0.00012 41.4 13.1 114 173-310 27-141 (475)
20 PF03848 TehB: Tellurite resis 89.5 9.9 0.00021 35.5 13.1 111 173-309 20-131 (192)
21 PRK11036 putative S-adenosyl-L 89.4 7.5 0.00016 37.0 12.7 113 173-309 35-147 (255)
22 PF12847 Methyltransf_18: Meth 89.4 1.4 3E-05 35.7 6.7 105 186-310 4-110 (112)
23 PF08241 Methyltransf_11: Meth 89.2 1.2 2.5E-05 34.5 5.9 93 188-308 1-94 (95)
24 PTZ00098 phosphoethanolamine N 88.9 9.4 0.0002 36.9 13.1 116 169-309 38-154 (263)
25 TIGR02021 BchM-ChlM magnesium 87.9 5.4 0.00012 36.9 10.4 116 166-309 36-156 (219)
26 PF02353 CMAS: Mycolic acid cy 87.5 3.9 8.5E-05 40.0 9.5 114 172-310 51-165 (273)
27 PLN02336 phosphoethanolamine N 87.1 12 0.00026 39.0 13.4 114 171-310 254-368 (475)
28 TIGR03587 Pse_Me-ase pseudamin 86.6 5 0.00011 37.3 9.3 100 186-313 46-145 (204)
29 PLN02585 magnesium protoporphy 86.5 5.7 0.00012 39.8 10.2 103 183-309 144-248 (315)
30 PLN02244 tocopherol O-methyltr 86.4 14 0.00029 37.2 12.9 100 183-308 118-220 (340)
31 PRK01683 trans-aconitate 2-met 86.2 7.7 0.00017 36.7 10.6 112 171-311 19-130 (258)
32 COG1341 Predicted GTPase or GT 86.0 8.7 0.00019 39.8 11.3 146 166-354 89-243 (398)
33 PRK11705 cyclopropane fatty ac 85.4 9.5 0.00021 39.1 11.4 112 170-310 154-266 (383)
34 TIGR03439 methyl_EasF probable 84.8 33 0.00072 34.5 14.7 169 174-357 69-258 (319)
35 PRK05785 hypothetical protein; 84.4 25 0.00054 33.2 13.0 93 184-310 52-145 (226)
36 COG2230 Cfa Cyclopropane fatty 83.8 12 0.00027 37.0 10.9 120 165-309 54-174 (283)
37 COG2227 UbiG 2-polyprenyl-3-me 81.3 4.4 9.5E-05 39.2 6.5 100 183-309 59-159 (243)
38 TIGR00452 methyltransferase, p 80.7 18 0.0004 36.2 11.0 114 173-310 111-224 (314)
39 TIGR01934 MenG_MenH_UbiE ubiqu 80.0 46 0.00099 30.1 15.3 118 170-312 26-145 (223)
40 TIGR00138 gidB 16S rRNA methyl 79.5 44 0.00096 30.4 12.4 97 185-310 44-141 (181)
41 PRK15068 tRNA mo(5)U34 methylt 78.9 28 0.0006 34.8 11.7 112 175-310 114-225 (322)
42 TIGR02072 BioC biotin biosynth 76.9 21 0.00045 32.7 9.5 100 183-310 34-134 (240)
43 PRK08317 hypothetical protein; 76.1 61 0.0013 29.4 14.4 112 175-309 11-122 (241)
44 PF13489 Methyltransf_23: Meth 75.8 22 0.00049 30.2 8.9 96 181-312 20-117 (161)
45 PLN02396 hexaprenyldihydroxybe 73.7 20 0.00044 36.0 9.1 100 184-310 132-234 (322)
46 PF08242 Methyltransf_12: Meth 73.0 1.1 2.4E-05 35.9 -0.1 97 188-306 1-98 (99)
47 PRK09489 rsmC 16S ribosomal RN 71.1 67 0.0014 32.5 12.2 114 172-310 185-302 (342)
48 PRK15001 SAM-dependent 23S rib 71.1 48 0.0011 34.1 11.3 121 173-311 218-340 (378)
49 PRK13255 thiopurine S-methyltr 70.9 52 0.0011 31.0 10.8 102 184-310 38-156 (218)
50 PRK00107 gidB 16S rRNA methylt 70.9 86 0.0019 28.8 12.2 96 185-310 47-144 (187)
51 smart00650 rADc Ribosomal RNA 70.4 66 0.0014 28.5 10.8 111 173-313 3-115 (169)
52 PRK10909 rsmD 16S rRNA m(2)G96 69.9 59 0.0013 30.3 10.7 106 186-316 56-164 (199)
53 PRK11873 arsM arsenite S-adeno 69.9 42 0.00091 32.1 10.1 100 185-309 79-181 (272)
54 PRK07580 Mg-protoporphyrin IX 68.5 36 0.00077 31.3 9.0 99 182-308 62-163 (230)
55 PRK10258 biotin biosynthesis p 68.3 1.1E+02 0.0023 28.8 13.9 108 170-309 29-138 (251)
56 TIGR02081 metW methionine bios 66.9 52 0.0011 29.8 9.7 39 174-222 6-44 (194)
57 COG2226 UbiE Methylase involve 66.8 1.3E+02 0.0027 29.1 16.1 132 160-315 27-160 (238)
58 PRK00121 trmB tRNA (guanine-N( 66.7 40 0.00087 31.0 8.9 108 183-309 40-154 (202)
59 PF03291 Pox_MCEL: mRNA cappin 66.6 90 0.002 31.5 12.0 114 183-309 62-184 (331)
60 PRK06922 hypothetical protein; 65.4 51 0.0011 36.6 10.5 104 185-309 420-535 (677)
61 PLN03075 nicotianamine synthas 65.2 66 0.0014 32.1 10.6 105 186-311 126-233 (296)
62 TIGR00091 tRNA (guanine-N(7)-) 64.2 34 0.00074 31.2 7.9 127 184-333 17-148 (194)
63 PF07521 RMMBL: RNA-metabolisi 64.2 11 0.00023 26.5 3.5 38 273-311 1-40 (43)
64 PF13679 Methyltransf_32: Meth 63.9 21 0.00046 30.9 6.2 41 179-222 21-61 (141)
65 COG4106 Tam Trans-aconitate me 62.4 38 0.00083 32.7 7.8 115 175-318 22-136 (257)
66 TIGR03534 RF_mod_PrmC protein- 60.5 1E+02 0.0022 28.5 10.6 78 183-282 87-165 (251)
67 TIGR01626 ytfJ_HI0045 conserve 60.2 35 0.00077 31.6 7.2 131 160-301 13-182 (184)
68 PRK00274 ksgA 16S ribosomal RN 59.6 75 0.0016 30.7 9.7 54 160-222 14-72 (272)
69 PRK00216 ubiE ubiquinone/menaq 58.7 1.4E+02 0.0031 27.1 13.4 113 175-309 43-156 (239)
70 TIGR03840 TMPT_Se_Te thiopurin 57.9 1.1E+02 0.0023 28.7 10.2 96 185-305 36-146 (213)
71 smart00828 PKS_MT Methyltransf 57.0 68 0.0015 29.4 8.6 100 186-309 2-102 (224)
72 PF02283 CobU: Cobinamide kina 54.1 1E+02 0.0023 27.8 9.1 123 199-333 12-145 (167)
73 PRK13944 protein-L-isoaspartat 53.7 1.7E+02 0.0037 26.8 10.7 106 174-308 63-170 (205)
74 PRK03522 rumB 23S rRNA methylu 53.4 2E+02 0.0043 28.4 11.8 98 185-310 175-273 (315)
75 COG0357 GidB Predicted S-adeno 51.2 46 0.001 31.6 6.5 63 184-264 68-131 (215)
76 PRK13168 rumA 23S rRNA m(5)U19 49.1 1.6E+02 0.0036 30.5 10.8 109 176-311 290-400 (443)
77 PF07522 DRMBL: DNA repair met 48.9 34 0.00074 28.5 4.7 34 270-307 70-103 (110)
78 PLN02446 (5-phosphoribosyl)-5- 48.7 22 0.00048 34.8 4.0 27 180-207 55-81 (262)
79 PLN02490 MPBQ/MSBQ methyltrans 48.1 1.9E+02 0.0042 29.3 10.8 100 183-309 113-213 (340)
80 TIGR00755 ksgA dimethyladenosi 47.7 1.8E+02 0.004 27.5 10.2 41 173-222 19-59 (253)
81 TIGR02085 meth_trns_rumB 23S r 47.6 3.1E+02 0.0067 27.9 12.3 97 186-310 236-333 (374)
82 TIGR02129 hisA_euk phosphoribo 47.0 26 0.00056 34.2 4.2 26 180-209 50-75 (253)
83 TIGR01983 UbiG ubiquinone bios 46.2 1.9E+02 0.0041 26.3 9.8 101 183-309 45-147 (224)
84 PRK05134 bifunctional 3-demeth 45.3 1.6E+02 0.0036 27.1 9.3 104 181-310 46-150 (233)
85 PTZ00338 dimethyladenosine tra 45.1 1.5E+02 0.0033 29.3 9.4 88 174-284 27-114 (294)
86 TIGR02469 CbiT precorrin-6Y C5 44.3 63 0.0014 26.0 5.7 30 186-222 22-51 (124)
87 PF02527 GidB: rRNA small subu 43.0 73 0.0016 29.4 6.3 59 186-261 51-109 (184)
88 PRK14121 tRNA (guanine-N(7)-)- 41.7 2.3E+02 0.0049 29.5 10.3 115 175-309 114-233 (390)
89 TIGR00537 hemK_rel_arch HemK-r 41.5 2.5E+02 0.0055 24.8 12.3 50 186-251 22-71 (179)
90 PF05175 MTS: Methyltransferas 41.0 74 0.0016 28.3 6.0 116 171-309 19-138 (170)
91 PRK14896 ksgA 16S ribosomal RN 39.6 3.4E+02 0.0073 25.9 10.7 40 174-222 20-59 (258)
92 PF15609 PRTase_2: Phosphoribo 37.7 1.3E+02 0.0028 28.3 7.0 69 179-254 118-187 (191)
93 TIGR01716 RGG_Cterm transcript 37.3 64 0.0014 29.6 5.1 55 74-128 127-182 (220)
94 TIGR00406 prmA ribosomal prote 35.6 4.2E+02 0.0092 25.7 10.9 113 168-309 142-257 (288)
95 PRK03646 dadX alanine racemase 35.6 50 0.0011 33.5 4.4 36 183-222 117-157 (355)
96 PLN02366 spermidine synthase 34.2 4.6E+02 0.0099 26.1 10.9 109 186-310 94-205 (308)
97 TIGR00563 rsmB ribosomal RNA s 33.1 5.6E+02 0.012 26.4 12.0 70 170-253 225-294 (426)
98 COG2242 CobL Precorrin-6B meth 31.8 1E+02 0.0022 28.9 5.3 53 176-241 27-82 (187)
99 PRK09271 flavodoxin; Provision 31.3 3.6E+02 0.0079 23.7 10.3 101 229-339 13-116 (160)
100 PRK07402 precorrin-6B methylas 31.2 1.8E+02 0.0039 26.3 7.0 118 167-311 24-142 (196)
101 cd02440 AdoMet_MTases S-adenos 31.1 2.1E+02 0.0047 21.0 10.1 29 186-222 1-29 (107)
102 PRK10507 bifunctional glutathi 29.8 1.6E+02 0.0035 32.5 7.3 86 190-286 353-444 (619)
103 PF00763 THF_DHG_CYH: Tetrahyd 29.8 1.4E+02 0.003 25.3 5.6 50 200-254 18-67 (117)
104 PRK00811 spermidine synthase; 29.5 5E+02 0.011 25.2 10.2 108 186-310 79-190 (283)
105 KOG1165 Casein kinase (serine/ 28.6 32 0.0007 35.3 1.6 13 181-193 164-176 (449)
106 cd00874 RNA_Cyclase_Class_II R 27.3 4.2E+02 0.0091 26.7 9.4 64 188-254 82-150 (326)
107 PRK14968 putative methyltransf 27.1 1.4E+02 0.0031 26.1 5.4 30 184-222 24-53 (188)
108 cd00635 PLPDE_III_YBL036c_like 27.0 1.6E+02 0.0034 27.4 6.0 68 183-254 117-198 (222)
109 PRK00312 pcm protein-L-isoaspa 26.9 1.7E+02 0.0036 26.8 6.0 53 175-239 70-122 (212)
110 PRK13587 1-(5-phosphoribosyl)- 26.8 92 0.002 29.7 4.3 32 178-209 42-75 (234)
111 PRK14902 16S rRNA methyltransf 26.6 5.7E+02 0.012 26.5 10.5 92 172-281 239-330 (444)
112 PF01168 Ala_racemase_N: Alani 26.2 1.6E+02 0.0036 26.8 5.8 70 181-254 109-190 (218)
113 PRK14904 16S rRNA methyltransf 25.8 7.6E+02 0.017 25.6 11.3 58 177-247 244-301 (445)
114 COG2813 RsmC 16S RNA G1207 met 25.2 1.4E+02 0.003 30.0 5.3 58 170-237 145-202 (300)
115 TIGR00417 speE spermidine synt 25.1 6.1E+02 0.013 24.3 13.7 134 186-340 75-210 (270)
116 PF02056 Glyco_hydro_4: Family 25.0 3.7E+02 0.0079 24.9 7.8 56 196-254 10-65 (183)
117 TIGR00536 hemK_fam HemK family 24.7 1.4E+02 0.0031 28.9 5.4 53 185-251 116-170 (284)
118 PRK08287 cobalt-precorrin-6Y C 24.2 2E+02 0.0043 25.7 5.9 97 185-310 33-130 (187)
119 PRK09328 N5-glutamine S-adenos 24.1 1.9E+02 0.0042 27.2 6.1 48 180-237 105-152 (275)
120 TIGR03183 DNA_S_dndC putative 23.7 2E+02 0.0043 30.5 6.4 81 173-254 3-91 (447)
121 KOG1271 Methyltransferases [Ge 23.3 4.2E+02 0.0091 25.2 7.7 122 186-329 70-196 (227)
122 cd06814 PLPDE_III_DSD_D-TA_lik 23.3 2.1E+02 0.0046 29.2 6.5 67 183-253 134-222 (379)
123 TIGR00044 pyridoxal phosphate 23.1 1.9E+02 0.0041 27.2 5.7 61 183-244 121-188 (229)
124 PRK10901 16S rRNA methyltransf 21.9 7.5E+02 0.016 25.5 10.3 89 174-281 235-323 (427)
125 PF14331 ImcF-related_N: ImcF- 21.8 2.2E+02 0.0047 27.6 6.0 62 196-262 8-82 (266)
126 PF02310 B12-binding: B12 bind 21.8 1.3E+02 0.0029 24.5 3.9 69 235-309 18-86 (121)
127 PTZ00146 fibrillarin; Provisio 21.7 8.1E+02 0.018 24.4 12.6 128 185-341 134-268 (293)
128 TIGR01858 tag_bisphos_ald clas 21.6 1.7E+02 0.0036 29.1 5.1 91 160-251 17-132 (282)
129 cd06827 PLPDE_III_AR_proteobac 21.6 1.1E+02 0.0024 31.0 4.0 59 183-245 115-180 (354)
130 PRK04148 hypothetical protein; 21.1 2.6E+02 0.0057 24.6 5.7 40 175-222 8-47 (134)
131 COG1093 SUI2 Translation initi 20.8 1.9E+02 0.0042 28.5 5.2 43 211-253 219-262 (269)
132 cd06819 PLPDE_III_LS_D-TA Type 20.7 2.3E+02 0.0049 28.2 6.0 33 184-220 127-165 (358)
133 COG1961 PinR Site-specific rec 20.5 5.5E+02 0.012 23.6 8.3 87 231-318 18-109 (222)
134 TIGR01005 eps_transp_fam exopo 20.1 8.5E+02 0.018 27.1 10.9 141 168-314 562-719 (754)
135 PRK11088 rrmA 23S rRNA methylt 20.0 5.7E+02 0.012 24.4 8.5 36 183-222 85-120 (272)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=2.1e-95 Score=733.35 Aligned_cols=309 Identities=35% Similarity=0.586 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHhhhhccCCCccccccchhcccCChHHHHHH
Q 047247 74 ASKLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVAEKSHSFDSARKL 153 (386)
Q Consensus 74 l~~LL~~cA~Av~~~~~~~A~~lL~~L~~laSp~Gd~~qRlA~yF~~AL~~Rl~~~~~~~~~~l~~~~~~~~~~~~~~~~ 153 (386)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+++++.|..+...............+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998887765443222223455678
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccc-hHHHHHH
Q 047247 154 ILKFQEVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSL-VRLVMKE 232 (386)
Q Consensus 154 ~~~f~~~~P~~kfa~~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~-~~~~l~e 232 (386)
++.|++.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.+ +.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999998654 5679999
Q ss_pred HHHHHHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccc------cchHHHHHHHHHhcCCcEE
Q 047247 233 IGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVA------VEERGAVIQMFQSLKPKVV 306 (386)
Q Consensus 233 tg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~------~~~r~~vL~~ir~L~P~vv 306 (386)
||+||.+||+++||||||++|.. ++||++++++|++++||+|||||+++|||+. .+||+.||+.||+|+|+||
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~-~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv 239 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVV-ESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV 239 (374)
T ss_pred HHHHHHHHHHHcCccEEEEeccc-CchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence 99999999999999999999653 4899999999999999999999999999997 4589999999999999999
Q ss_pred EEeeecCCCCCCccchHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHhh-hccccccccccCCCCCccCCCCcccccc
Q 047247 307 TIVEEEADLTSSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLMLERE-CSRDIVRVLACDDDNNSSNNGNGDREEE 385 (386)
Q Consensus 307 vlvE~ea~~n~~~~~F~~RF~eaL~~YsalFDsLda~~~~~s~eR~~iE~~-~g~eI~niVAcEG~~RvER~E~~~~W~~ 385 (386)
|++|+|+|||+| +|++||.|||+||+++|||||+++|+++++|..+|+. ||+||+|||||||.+|+||||++++|++
T Consensus 240 v~~E~ea~~n~~--~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~ 317 (374)
T PF03514_consen 240 VLVEQEADHNSP--SFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRR 317 (374)
T ss_pred EEEeecCCCCCC--chHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHH
Confidence 999999999999 9999999999999999999999999999999999998 9999999999999999999999999985
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.31 E-value=0.29 Score=46.71 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=74.8
Q ss_pred hcCchHHHHHHHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHH
Q 047247 159 EVSPWTTFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRME 238 (386)
Q Consensus 159 ~~~P~~kfa~~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~ 238 (386)
...|.+...|-.++..+-..+. ..-+|+|+|.|.|.--..|.+.+ ..|..++|||+. +...++.+.+++.
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~-----~~~~~~v~gvD~---S~~ml~~A~~~~~ 103 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNI-----HHDNCKIIAIDN---SPAMIERCRRHID 103 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhc-----CCCCCeEEEEeC---CHHHHHHHHHHHH
Confidence 4678888777776654333333 22479999999987433333222 124579999995 3335555555543
Q ss_pred HHHHHcCC--ceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCc-EEEEeeecC
Q 047247 239 KFARLMGV--PFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPK-VVTIVEEEA 313 (386)
Q Consensus 239 ~fA~~lgi--pFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~-vvvlvE~ea 313 (386)
+ .|. .++|.. . ++.++.. ...++++ +.+.||++....+..+|+.| +.|+|. +++++|.-.
T Consensus 104 ~----~~~~~~v~~~~--~--d~~~~~~-----~~~D~vv--~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 104 A----YKAPTPVDVIE--G--DIRDIAI-----ENASMVV--LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred h----cCCCCCeEEEe--C--ChhhCCC-----CCCCEEe--hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 3 333 344432 2 3444332 2234443 45678888755567777776 668998 455666433
No 3
>PRK06202 hypothetical protein; Provisional
Probab=95.08 E-value=0.61 Score=43.79 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=57.5
Q ss_pred cCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCc
Q 047247 179 LDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNR 258 (386)
Q Consensus 179 ~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~ 258 (386)
+...+...|+|+|.|.|. +...|.....+ ..|..+||||+.. ...++.+.++. ...|+.+. ...
T Consensus 56 l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s---~~~l~~a~~~~----~~~~~~~~--~~~---- 119 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPD---PRAVAFARANP----RRPGVTFR--QAV---- 119 (232)
T ss_pred cCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCC---HHHHHHHHhcc----ccCCCeEE--EEe----
Confidence 333456789999999996 33333222222 2245799999952 23343333221 12244433 332
Q ss_pred cccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 259 LVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 259 ~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
.+.+.. .++..=+|-|.+.|||+.+.....+|+.+..+.-..+++.
T Consensus 120 ~~~l~~-----~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 120 SDELVA-----EGERFDVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cccccc-----cCCCccEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 122211 2233334445566999975545678887766544455444
No 4
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.71 E-value=1.1 Score=43.92 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 172 NGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 172 NqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
.+.|++.+.-.+.-+|+|+|.|.|. +...++.+. |.+++|+++.| ..++.+.+ .++..|+.=.++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~----~~~~~a~~----~~~~~gl~~rv~ 202 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP----GAIDLVNE----NAAEKGVADRMR 202 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH----HHHHHHHH----HHHhCCccceEE
Confidence 5677888775666799999999983 445555553 56899999853 24444433 445556542233
Q ss_pred EeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcE-EEEeeecC
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKV-VTIVEEEA 313 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~v-vvlvE~ea 313 (386)
.+.. +..+.. + ...+++++ ...||+........+|+.+ +.|+|.- ++++|.-.
T Consensus 203 ~~~~--d~~~~~---~--~~~D~v~~--~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 203 GIAV--DIYKES---Y--PEADAVLF--CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEec--CccCCC---C--CCCCEEEe--EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 3322 222111 1 22344333 3357776544445677766 6799964 44556543
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.01 E-value=1.1 Score=42.27 Aligned_cols=106 Identities=13% Similarity=0.194 Sum_probs=61.7
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVEL 262 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l 262 (386)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+. +...++.+.+++.++. .+..++|.. . ++.++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~---s~~ml~~a~~~~~~~~--~~~~v~~~~--~--d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDN---SQPMVERCRQHIAAYH--SEIPVEILC--N--DIRHV 118 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeC---CHHHHHHHHHHHHhcC--CCCCeEEEE--C--ChhhC
Confidence 33479999999984 4455554421 24689999995 2335555555554331 122344432 2 34444
Q ss_pred cccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 263 TKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 263 ~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
... +..+ |-|.+.||++....+..+|+.+ +.|+|.-.+++
T Consensus 119 ~~~-----~~d~--v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 EIK-----NASM--VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CCC-----CCCE--EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 322 2233 4466678888655566777766 66899976665
No 6
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=93.81 E-value=0.38 Score=42.02 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=71.0
Q ss_pred CceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCccc
Q 047247 182 ETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLV 260 (386)
Q Consensus 182 ~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e 260 (386)
.+..+|+|+|.|.|..= ..|+.+ -.|..+|+||+. +...+ +...+.++..|++ .+|..- +++
T Consensus 2 ~~~~~iLDlGcG~G~~~----~~l~~~--~~~~~~i~gvD~---s~~~i----~~a~~~~~~~~~~ni~~~~~----d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLL----IQLAKE--LNPGAKIIGVDI---SEEMI----EYAKKRAKELGLDNIEFIQG----DIE 64 (152)
T ss_dssp TTTSEEEEET-TTSHHH----HHHHHH--STTTSEEEEEES---SHHHH----HHHHHHHHHTTSTTEEEEES----BTT
T ss_pred CCCCEEEEecCcCcHHH----HHHHHh--cCCCCEEEEEEC---cHHHH----HHhhcccccccccccceEEe----ehh
Confidence 35678999999998543 334422 113467999995 22233 4445567778887 555553 466
Q ss_pred cccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeeecCCCCCCccchHHHHHHHHHHHHHHHH
Q 047247 261 ELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFYTLYFE 338 (386)
Q Consensus 261 ~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ea~~n~~~~~F~~RF~eaL~~YsalFD 338 (386)
++... +. +..=+|.+...+|++. ++...+-+..+.|+|..++++..-. +.. ...+...+-..+|..+..
T Consensus 65 ~l~~~-~~---~~~D~I~~~~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 133 (152)
T PF13847_consen 65 DLPQE-LE---EKFDIIISNGVLHHFP-DPEKVLKNIIRLLKPGGILIISDPN-HND---ELPEQLEELMNLYSEVWS 133 (152)
T ss_dssp CGCGC-SS---TTEEEEEEESTGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE-HSH---HHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cC---CCeeEEEEcCchhhcc-CHHHHHHHHHHHcCCCcEEEEEECC-hHH---HHHHHHHHHHHHHHHHhh
Confidence 65433 33 2333344444457654 3334444456778988766653222 111 333555555555554443
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=93.59 E-value=3.7 Score=38.16 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=58.6
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
+.++..+.=.+.-+|+|+|.|.|.-. ..|+++ .+|..++|||+.. ...++.+.+++. ..+++ ....
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~--~~~~~~v~gvD~s---~~~~~~a~~~~~----~~~~~-~v~~ 100 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEA--VGPEGHVIGLDFS---ENMLSVGRQKVK----DAGLH-NVEL 100 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHH--hCCCCEEEEEECC---HHHHHHHHHHHH----hcCCC-ceEE
Confidence 45555655334457999999998732 344433 2245689999952 233444444432 33443 2222
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHH-HHHhcCCcEEEEe
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQ-MFQSLKPKVVTIV 309 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~-~ir~L~P~vvvlv 309 (386)
+.. +.+++.. .-..=+.|+ +.+.+|++. ++ ..+|+ ..+.|+|.-.+++
T Consensus 101 ~~~--d~~~~~~---~~~~fD~V~--~~~~l~~~~-~~-~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 101 VHG--NAMELPF---DDNSFDYVT--IGFGLRNVP-DY-MQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EEe--chhcCCC---CCCCccEEE--EecccccCC-CH-HHHHHHHHHHcCcCeEEEE
Confidence 321 2333321 111113444 345577764 33 34555 4577899865554
No 8
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=93.36 E-value=0.52 Score=43.40 Aligned_cols=111 Identities=8% Similarity=0.054 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceE
Q 047247 170 ASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFE 249 (386)
Q Consensus 170 tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFe 249 (386)
++...|++++.-...-+|+|+|.|.|.--.. ||.+ + .++|||+.. ...++. +.+.++..|++..
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~----la~~-g----~~V~~iD~s---~~~l~~----a~~~~~~~~~~v~ 80 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLY----LSLA-G----YDVRAWDHN---PASIAS----VLDMKARENLPLR 80 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHH----HHHC-C----CeEEEEECC---HHHHHH----HHHHHHHhCCCce
Confidence 4566777887755556999999999874433 3444 2 489999852 223333 3334555677644
Q ss_pred EEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEE
Q 047247 250 FKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVV 306 (386)
Q Consensus 250 F~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vv 306 (386)
+... ++.... +. ..-+.++.+ +.+|++....+..+++.+ +.|+|.-.
T Consensus 81 ~~~~----d~~~~~---~~-~~fD~I~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 81 TDAY----DINAAA---LN-EDYDFIFST--VVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred eEec----cchhcc---cc-CCCCEEEEe--cccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 4333 122221 11 112444433 346777655677788776 56899975
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.76 E-value=9.8 Score=36.68 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=65.7
Q ss_pred HHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 172 NGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 172 NqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
...+++.+.-...-+|+|+|.|.|. +...|+.+. +|.-+||||+. +..-++.+.++....++...-..+|.
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~---S~~ml~~A~~r~~~~~~~~~~~i~~~ 132 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDF---SSEQLAVAASRQELKAKSCYKNIEWI 132 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEEC---CHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 3444444443445589999999997 334555542 23458999995 33455555555432222222233443
Q ss_pred EeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEE-EEeee
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVV-TIVEE 311 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vv-vlvE~ 311 (386)
.- +.+++. ..++..=+|-+.+.||++. ++...+-+..|-|+|.-. +++|-
T Consensus 133 ~~----d~~~lp-----~~~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 133 EG----DATDLP-----FDDCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred Ec----ccccCC-----CCCCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 22 244332 3333344555677789875 444444445577999854 44443
No 10
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.75 E-value=0.37 Score=39.08 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=54.6
Q ss_pred EeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccccccc
Q 047247 187 IIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGT 266 (386)
Q Consensus 187 IIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~ 266 (386)
|+|+|.|.|.-=..|.+.+ .+ + |..+++||+. +...++.+.++.. ..|++.+|..- ++.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~---s~~~l~~~~~~~~----~~~~~~~~~~~----D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDI---SPEMLELAKKRFS----EDGPKVRFVQA----DARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES----HHHHHHHHHHSH----HTTTTSEEEES----CTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEEC---CHHHHHHHHHhch----hcCCceEEEEC----CHhHCc---
Confidence 7999999987666666665 21 2 5699999995 3334544443333 35667777332 344443
Q ss_pred cccCCCce-EEEeecccccccccchHHHHHHHHHh-cCC
Q 047247 267 LGVKEDEA-VAVNCIGALRRVAVEERGAVIQMFQS-LKP 303 (386)
Q Consensus 267 L~~~~~Ea-LaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P 303 (386)
...+.. +||.+...+||+....+..+|+.+.+ ++|
T Consensus 63 --~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 63 --FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp --HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred --ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCC
Confidence 222333 34444555889877777888887755 455
No 11
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=92.67 E-value=0.92 Score=44.31 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=60.5
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
.+++++.--+.-+|+|+|.|.|. +...|+.+ | .++|||+.. ...++ .+.+.|+..|+.+++...
T Consensus 111 ~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s---~~ai~----~~~~~~~~~~l~v~~~~~ 174 (287)
T PRK12335 111 EVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G---FDVTAVDIN---QQSLE----NLQEIAEKENLNIRTGLY 174 (287)
T ss_pred HHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C---CEEEEEECC---HHHHH----HHHHHHHHcCCceEEEEe
Confidence 34444432222389999999987 33445554 2 589999952 22333 344556667776655433
Q ss_pred ecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEE
Q 047247 254 TGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVT 307 (386)
Q Consensus 254 ~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvv 307 (386)
+++... +. ..=+.|+.+ +.||++....+..+|+.+ +.|+|.-+.
T Consensus 175 ----D~~~~~---~~-~~fD~I~~~--~vl~~l~~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 175 ----DINSAS---IQ-EEYDFILST--VVLMFLNRERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred ----chhccc---cc-CCccEEEEc--chhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence 232221 10 112344444 347777655667788766 568998763
No 12
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=92.66 E-value=1.9 Score=42.48 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=72.8
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
.|.+.+.. ...|||+|.|.|.-=..|++++.. ..++|||+. +.+.|+.+.++|.+- .-+++ +..+
T Consensus 56 ~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDi---S~~mL~~a~~~l~~~--~p~~~--v~~i 120 (301)
T TIGR03438 56 EIAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDI---SADALKESAAALAAD--YPQLE--VHGI 120 (301)
T ss_pred HHHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEEC---CHHHHHHHHHHHHhh--CCCce--EEEE
Confidence 35555532 246999999999777778887743 378999995 445677777777541 12343 3444
Q ss_pred ecCCccccccccccc-cCCCceEEEeecccccccccchHHHHHHHHH-hcCCcEEEEee
Q 047247 254 TGLNRLVELTKGTLG-VKEDEAVAVNCIGALRRVAVEERGAVIQMFQ-SLKPKVVTIVE 310 (386)
Q Consensus 254 ~~~~~~e~l~~~~L~-~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir-~L~P~vvvlvE 310 (386)
.. +..+... .+. ...+..+++.+...++++.......+|+.++ .|+|.-..++.
T Consensus 121 ~g--D~~~~~~-~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 121 CA--DFTQPLA-LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EE--cccchhh-hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 32 2332110 000 1123567777777788886555667888884 58998666653
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=92.45 E-value=1.3 Score=40.85 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFK 251 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~ 251 (386)
+.+++.+.....-.|+|+|.|.|. +...||.+ | .+||||+.. ...++.+. +.++..|+. .++.
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S---~~~i~~a~----~~~~~~~~~~v~~~ 83 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKN---PMSIANLE----RIKAAENLDNLHTA 83 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCC---HHHHHHHH----HHHHHcCCCcceEE
Confidence 344555544444579999999987 33445555 2 489999852 22333332 223344554 3333
Q ss_pred EeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEE
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTI 308 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvl 308 (386)
.. ++.++... ..=+.|+.+ +.+|++....+..+++.+ +.|+|.-.++
T Consensus 84 ~~----d~~~~~~~----~~fD~I~~~--~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 84 VV----DLNNLTFD----GEYDFILST--VVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ec----ChhhCCcC----CCcCEEEEe--cchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 22 34433221 112344433 446777655677777766 5679998643
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.01 E-value=2.1 Score=40.82 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=61.6
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
.+++.+...+-..|+|++.|.|.-+. .|+.+.+ |.-+|+|++. +..-|+...+++.+.... ..+|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~----~l~~~~~--~~~~v~~vD~---s~~ML~~a~~k~~~~~~~---~i~~v~- 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTR----ELARRVG--PNGKVVGVDI---SPGMLEVARKKLKREGLQ---NIEFVQ- 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHH----HHGGGSS-----EEEEEES----HHHHHHHHHHHHHTT-----SEEEEE-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHH----HHHHHCC--CccEEEEecC---CHHHHHHHHHHHHhhCCC---CeeEEE-
Confidence 34555566666799999999995444 3444422 3459999995 334566666666544322 233322
Q ss_pred ecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEE-Eeee
Q 047247 254 TGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVT-IVEE 311 (386)
Q Consensus 254 ~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvv-lvE~ 311 (386)
. +.++ |...++..=+|-|.|.||++. ++...+=+..|-|+|.-.+ ++|-
T Consensus 105 -~--da~~-----lp~~d~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 105 -G--DAED-----LPFPDNSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp ----BTTB-------S-TT-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -c--CHHH-----hcCCCCceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEeec
Confidence 2 2333 445567777888999999986 3444555667889998644 4443
No 15
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.84 E-value=0.89 Score=44.42 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhcC----CCceeEEeeccCCCCC-ChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHH
Q 047247 167 GHVASNGAILEALD----GETKLHIIDMSNTLCT-QWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFA 241 (386)
Q Consensus 167 a~~tANqaILeA~~----g~~~VHIIDf~i~~G~-QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA 241 (386)
+++++-..||+.+. +-+--+|+|||-|-|. =|.. .+.+ + -...+|+|+. ...+.++|++|.+-.
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~---~---~~~~~~~vd~----s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW---P---SLKEYTCVDR----SPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh---c---CceeeeeecC----CHHHHHHHHHHHhcc
Confidence 55666777777765 3455699999999884 3322 2222 1 2468999984 234566777776533
Q ss_pred HHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEeeecCCCCCCcc
Q 047247 242 RLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVEEEADLTSSRY 320 (386)
Q Consensus 242 ~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE~ea~~n~~~~ 320 (386)
....- .+.. ..+..+...+.+.+-|+ +.+.|-.+....|..+++.+ ..++| ++|+||+..-.+.
T Consensus 82 ~~~~~-~~~~--------~~~~~~~~~~~~~DLvi--~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~~Gf--- 146 (274)
T PF09243_consen 82 PNNRN-AEWR--------RVLYRDFLPFPPDDLVI--ASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGTPAGF--- 146 (274)
T ss_pred ccccc-chhh--------hhhhcccccCCCCcEEE--EehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCChHHH---
Confidence 21110 0011 11111112223323322 33345555556788888888 45566 8889988443333
Q ss_pred chHHHHHHHH
Q 047247 321 DFVKCFEECL 330 (386)
Q Consensus 321 ~F~~RF~eaL 330 (386)
..+.+.++.|
T Consensus 147 ~~i~~aR~~l 156 (274)
T PF09243_consen 147 RRIAEARDQL 156 (274)
T ss_pred HHHHHHHHHH
Confidence 5777777766
No 16
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.35 E-value=1.4 Score=42.82 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCCceeEEeeccCCCCCChHHHHHHHhcCCC--CCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc----------
Q 047247 180 DGETKLHIIDMSNTLCTQWPTLLEALATRND--ETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP---------- 247 (386)
Q Consensus 180 ~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~--gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip---------- 247 (386)
...+.++|.|.|.+.|--+-+|--.|++.-. ..+..+|+|++.. ...++.+.+....-..--++|
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis---~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~ 172 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID---LKALEKARAGIYPERELEDLPKALLARYFSR 172 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC---HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEe
Confidence 3456799999999999988777666665422 1347899999963 334554443221110001222
Q ss_pred --------------eEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 248 --------------FEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 248 --------------FeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
.+|... ++.+.. ...+..=+|-|...||++....+..+++.+ +.|+|.-++++
T Consensus 173 ~~~~~~v~~~ir~~V~F~~~----dl~~~~-----~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 173 VEDKYRVKPELKERVRFAKH----NLLAES-----PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CCCeEEEChHHhCcCEEeec----cCCCCC-----CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 122221 111111 112222234456678888655566677765 67899966655
No 17
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=90.44 E-value=3 Score=39.30 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=64.3
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
..++++..=.+.-+|||+|-|.| .+..+|+.+. |.||+|..+.|. .++.+.+ .=..+|.+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp~----v~~~~~~---------~~rv~~~~ 149 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLPE----VIEQAKE---------ADRVEFVP 149 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-HH----HHCCHHH---------TTTEEEEE
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccHh----hhhcccc---------cccccccc
Confidence 55677776555568999999998 3445555544 679999999653 2222222 22233433
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCc---EEEEeeecCCCC
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPK---VVTIVEEEADLT 316 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~---vvvlvE~ea~~n 316 (386)
- ++- +.+.. .+ +|-+..-||+..+.....+|+.+ ++|+|. .++++|.-.+..
T Consensus 150 g----d~f----~~~P~--~D--~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 150 G----DFF----DPLPV--AD--VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp S-----TT----TCCSS--ES--EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred c----cHH----hhhcc--cc--ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 2 111 22222 23 44445558888766666788877 557886 777777665543
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=90.05 E-value=3.8 Score=38.99 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=61.0
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
.+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+.. ...+ +.|+..++.| ...
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s---~~~~--------~~a~~~~~~~--~~~ 79 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS---PEMV--------AAARERGVDA--RTG 79 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC---HHHH--------HHHHhcCCcE--EEc
Confidence 46666655555789999999983 455666663 34689999952 2223 2333345543 221
Q ss_pred ecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeee
Q 047247 254 TGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEE 311 (386)
Q Consensus 254 ~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ 311 (386)
+.+++.+ ++..=+|-|...||++. ++...+-+..+.|+|.-.+++..
T Consensus 80 ----d~~~~~~------~~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 80 ----DVRDWKP------KPDTDVVVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ----ChhhCCC------CCCceEEEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEc
Confidence 3443321 12222344444578874 44444444557799997776653
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.67 E-value=5.7 Score=41.40 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=61.1
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
..|++.+...+.-+|+|+|.|.|.-- ..|+.+. -+++||+.. ...++.. ..+ . ...-..+|..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s---~~~l~~a-~~~---~-~~~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFI---ESVIKKN-ESI---N-GHYKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCC---HHHHHHH-HHH---h-ccCCceEEEE
Confidence 45556665444448999999999544 4455442 278999852 2233321 111 1 1111233332
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
. ++++. .+...++..=+|-|.+.|||+....+..+|+.+ +-|+|.-.++..
T Consensus 90 ~----d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 90 A----DVTSP---DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred e----ccccc---ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2 22211 122223333345556679998765567777766 448999877664
No 20
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=89.54 E-value=9.9 Score=35.49 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=69.1
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
..+++|++--+.-.++|+|.|.|.= + --||++. ..+|+++.. ...+ ++|.+.|+.-+++.+...
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~G-----~~VtAvD~s---~~al----~~l~~~a~~~~l~i~~~~ 83 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQG-----FDVTAVDIS---PVAL----EKLQRLAEEEGLDIRTRV 83 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHTT------EEEEEESS---HHHH----HHHHHHHHHTT-TEEEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHCC-----CeEEEEECC---HHHH----HHHHHHHhhcCceeEEEE
Confidence 3466777655666899999999841 2 2366662 899999952 2233 567788999999976665
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHh-cCCcEEEEe
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS-LKPKVVTIV 309 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P~vvvlv 309 (386)
. ++++.... ++.=+|.+...++++....++.+++.+++ ++|..+.+.
T Consensus 84 ~----Dl~~~~~~------~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 84 A----DLNDFDFP------EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp -----BGCCBS-T------TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred e----cchhcccc------CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 4 34443321 23334556666788877788888888865 799855544
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.42 E-value=7.5 Score=37.03 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=62.7
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.++ ++..|+.-....
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~---s~~~l~~a~~~----~~~~g~~~~v~~ 97 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDL---SAEMIQRAKQA----AEAKGVSDNMQF 97 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEEC---CHHHHHHHHHH----HHhcCCccceEE
Confidence 35667665 344699999999983 45556665 2 48999985 22344444333 344565433333
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
+.+ +++++.+. .++..=+|-|...||++. +|...+-...+-|+|.-.+++
T Consensus 98 ~~~--d~~~l~~~----~~~~fD~V~~~~vl~~~~-~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 98 IHC--AAQDIAQH----LETPVDLILFHAVLEWVA-DPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEc--CHHHHhhh----cCCCCCEEEehhHHHhhC-CHHHHHHHHHHHcCCCeEEEE
Confidence 332 34444321 112222233556678774 454444445577899977754
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.41 E-value=1.4 Score=35.73 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=57.8
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG 265 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~ 265 (386)
+|+|+|.|.|. +...|+.+. |..++|||+. +...++.+.++..+ ...+-..+|..- ++ ....+
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---~~~~v~gvD~---s~~~~~~a~~~~~~--~~~~~~i~~~~~----d~-~~~~~ 66 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---PGARVVGVDI---SPEMLEIARERAAE--EGLSDRITFVQG----DA-EFDPD 66 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---TTSEEEEEES---SHHHHHHHHHHHHH--TTTTTTEEEEES----CC-HGGTT
T ss_pred EEEEEcCcCCH----HHHHHHhcC---CCCEEEEEeC---CHHHHHHHHHHHHh--cCCCCCeEEEEC----cc-ccCcc
Confidence 68999999984 333444421 3478999995 33456555555533 222333444432 23 11111
Q ss_pred ccccCCCceEEEeeccccccccc-chHHHHHHHH-HhcCCcEEEEee
Q 047247 266 TLGVKEDEAVAVNCIGALRRVAV-EERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 266 ~L~~~~~EaLaVN~~~~Lh~l~~-~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
. ..+=+.++.+. +.++++.. ..+..+|+.+ +.|+|.-+++++
T Consensus 67 ~--~~~~D~v~~~~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 67 F--LEPFDLVICSG-FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp T--SSCEEEEEECS-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c--CCCCCEEEECC-CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 11124555555 45665542 4566778766 468999888775
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=89.23 E-value=1.2 Score=34.49 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=51.2
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccccc
Q 047247 188 IDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTL 267 (386)
Q Consensus 188 IDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L 267 (386)
+|+|.|.|.....|.+. +-.++|+++. +...++.+.+ ..+..+++ .+.. +.++ +
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~---~~~~~~~~~~----~~~~~~~~----~~~~--d~~~-----l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDI---SEEMLEQARK----RLKNEGVS----FRQG--DAED-----L 54 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES----HHHHHHHHH----HTTTSTEE----EEES--BTTS-----S
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeC---CHHHHHHHHh----cccccCch----heee--hHHh-----C
Confidence 58888887766655554 3479999995 2233433322 22233333 2211 2333 3
Q ss_pred ccCCCceEEEeecccccccccchHHHHHH-HHHhcCCcEEEE
Q 047247 268 GVKEDEAVAVNCIGALRRVAVEERGAVIQ-MFQSLKPKVVTI 308 (386)
Q Consensus 268 ~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~-~ir~L~P~vvvl 308 (386)
...++-.=+|-+...+|++ ..+..+++ ..|-|+|.-..+
T Consensus 55 ~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEe
Confidence 4455556577777888888 34445555 457789987654
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.89 E-value=9.4 Score=36.86 Aligned_cols=116 Identities=11% Similarity=0.177 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCce
Q 047247 169 VASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPF 248 (386)
Q Consensus 169 ~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipF 248 (386)
.-+...+++.+.-...-+|+|+|.|.|.-. ..|+.+. ..++|||+.. ...++...++... .-..
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s---~~~~~~a~~~~~~-----~~~i 101 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDIC---EKMVNIAKLRNSD-----KNKI 101 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECC---HHHHHHHHHHcCc-----CCce
Confidence 345677788876666678999999998732 3344433 2589999952 2234333333221 1123
Q ss_pred EEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 249 EFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 249 eF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
+|... ++.+. ...++..=+|-+...++|+....+..+|+.+ +.|+|.-.+++
T Consensus 102 ~~~~~----D~~~~-----~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 102 EFEAN----DILKK-----DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEC----CcccC-----CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 33332 22221 1222222222233446666544566777766 66899966655
No 25
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=87.94 E-value=5.4 Score=36.91 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcC--CCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHH
Q 047247 166 FGHVASNGAILEALD--GETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARL 243 (386)
Q Consensus 166 fa~~tANqaILeA~~--g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~ 243 (386)
.++-.....+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+||||+.. ...++...+++. .
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s---~~~i~~a~~~~~----~ 99 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS---EQMVQMARNRAQ----G 99 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC---HHHHHHHHHHHH----h
Confidence 344555566666665 2345689999999985 555666552 489999952 234444444432 2
Q ss_pred cCC--ceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHh-cCCcEEEEe
Q 047247 244 MGV--PFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS-LKPKVVTIV 309 (386)
Q Consensus 244 lgi--pFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P~vvvlv 309 (386)
.++ .++|... +++++. ..-+.+ -+...++|+.......+++.+.. ++|.+++..
T Consensus 100 ~~~~~~i~~~~~----d~~~~~------~~fD~i--i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 100 RDVAGNVEFEVN----DLLSLC------GEFDIV--VCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred cCCCCceEEEEC----ChhhCC------CCcCEE--EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 333 3455432 344433 112333 23334566654445567776654 566666554
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=87.53 E-value=3.9 Score=40.01 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 172 NGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 172 NqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
...|+|.+.=+.-=||+|+|.| |=.+...+|++.| .++|||.. +.... +...+.++..|++=...
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitl---S~~Q~----~~a~~~~~~~gl~~~v~ 115 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITL---SEEQA----EYARERIREAGLEDRVE 115 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES----HHHH----HHHHHHHHCSTSSSTEE
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEEC---CHHHH----HHHHHHHHhcCCCCceE
Confidence 4456677664555589999877 5688888999863 68999985 22233 23445566778873333
Q ss_pred EeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHH-hcCCcEEEEee
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQ-SLKPKVVTIVE 310 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir-~L~P~vvvlvE 310 (386)
.+.. ++.+++. .- ++ |-++-.+-|+.....+.+++.+. -|+|.-.+++.
T Consensus 116 v~~~--D~~~~~~-----~f-D~--IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 116 VRLQ--DYRDLPG-----KF-DR--IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEES---GGG--------S--SE--EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEe--eccccCC-----CC-CE--EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3332 4555443 22 22 33334577776666788999884 57999887764
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.05 E-value=12 Score=39.04 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEE
Q 047247 171 SNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEF 250 (386)
Q Consensus 171 ANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF 250 (386)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.. ...++.+.++ +...+...+|
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS---~~~l~~A~~~----~~~~~~~v~~ 318 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS---VNMISFALER----AIGRKCSVEF 318 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC---HHHHHHHHHH----hhcCCCceEE
Confidence 44567777654445689999999985 3445666542 489999963 2344433332 2233444555
Q ss_pred EEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHH-HHHhcCCcEEEEee
Q 047247 251 KVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQ-MFQSLKPKVVTIVE 310 (386)
Q Consensus 251 ~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~-~ir~L~P~vvvlvE 310 (386)
... ++.++. ..++..=+|-|...++|+. ++. .+|+ ..+.|+|.-.+++.
T Consensus 319 ~~~----d~~~~~-----~~~~~fD~I~s~~~l~h~~-d~~-~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 319 EVA----DCTKKT-----YPDNSFDVIYSRDTILHIQ-DKP-ALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEc----CcccCC-----CCCCCEEEEEECCcccccC-CHH-HHHHHHHHHcCCCeEEEEE
Confidence 443 233222 1223233455566678875 444 4555 45778999777664
No 28
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=86.59 E-value=5 Score=37.34 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=56.0
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG 265 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~ 265 (386)
.|+|+|.|.|..-..| +.+. |..++|||+. +...++.+.+++ -++ ++... ++.+ +
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDi---S~~~l~~A~~~~------~~~--~~~~~----d~~~--~- 100 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEI---NEYAVEKAKAYL------PNI--NIIQG----SLFD--P- 100 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEEC---CHHHHHHHHhhC------CCC--cEEEe----eccC--C-
Confidence 4999999999544444 3331 2368999985 223444433322 122 22221 1221 1
Q ss_pred ccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeeecC
Q 047247 266 TLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEA 313 (386)
Q Consensus 266 ~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ea 313 (386)
..++..=+|-+...|||+....+..+++.+....-+.++++|...
T Consensus 101 ---~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ---FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 122222233356668888655567788888777777888888654
No 29
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.46 E-value=5.7 Score=39.76 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=60.0
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHH-Hc-CCceEEEEeecCCccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFAR-LM-GVPFEFKVITGLNRLV 260 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~-~l-gipFeF~~v~~~~~~e 260 (386)
+...|+|+|.|.|. +...|+.+ | .+||||+. +...++...++..+.-. .. +...+|... +++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g---~~V~gvD~---S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~----Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G---AIVSASDI---SAAMVAEAERRAKEALAALPPEVLPKFEAN----DLE 207 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C---CEEEEEEC---CHHHHHHHHHHHHhcccccccccceEEEEc----chh
Confidence 34689999999986 44555554 2 48999995 33345555444332100 00 233455443 344
Q ss_pred cccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 261 ELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 261 ~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
+++. .=+ +|-|...|+|+..+....+++.++.+.|..+++.
T Consensus 208 ~l~~------~fD--~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 208 SLSG------KYD--TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcCC------CcC--EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEE
Confidence 3321 112 3335566778776666678888888888877774
No 30
>PLN02244 tocopherol O-methyltransferase
Probab=86.43 E-value=14 Score=37.19 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=55.5
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc--eEEEEeecCCccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP--FEFKVITGLNRLV 260 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip--FeF~~v~~~~~~e 260 (386)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.. ...++. ..+.++..|+. .+|..- +..
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s---~~~i~~----a~~~~~~~g~~~~v~~~~~----D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS---PVQAAR----ANALAAAQGLSDKVSFQVA----DAL 178 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC---HHHHHH----HHHHHHhcCCCCceEEEEc----Ccc
Confidence 34479999999985 4455666542 489999852 222322 22334445553 455432 233
Q ss_pred cccccccccCCCceEEEeecccccccccchHHHHHH-HHHhcCCcEEEE
Q 047247 261 ELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQ-MFQSLKPKVVTI 308 (386)
Q Consensus 261 ~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~-~ir~L~P~vvvl 308 (386)
++. ..++..=+|-+...+||+. + +..+|+ ..|-|+|.-.++
T Consensus 179 ~~~-----~~~~~FD~V~s~~~~~h~~-d-~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQP-----FEDGQFDLVWSMESGEHMP-D-KRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCC-----CCCCCccEEEECCchhccC-C-HHHHHHHHHHHcCCCcEEE
Confidence 332 2233333455666788875 3 344554 457789975443
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=86.16 E-value=7.7 Score=36.72 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=62.2
Q ss_pred HHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEE
Q 047247 171 SNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEF 250 (386)
Q Consensus 171 ANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF 250 (386)
-+..+++.+.-.+.-+|+|+|.|.| .+...|+.+. |..+++||+.. ...++.+.+++ -..+|
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s---~~~i~~a~~~~--------~~~~~ 80 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSS---PAMLAEARSRL--------PDCQF 80 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECC---HHHHHHHHHhC--------CCCeE
Confidence 3556677766555678999999998 2344566553 34699999952 22333333221 12334
Q ss_pred EEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeee
Q 047247 251 KVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEE 311 (386)
Q Consensus 251 ~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ 311 (386)
... +++++.+. ..=+.+ -|...||++. ++...+-+..+.|+|.-.+++..
T Consensus 81 ~~~----d~~~~~~~----~~fD~v--~~~~~l~~~~-d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 81 VEA----DIASWQPP----QALDLI--FANASLQWLP-DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEC----chhccCCC----CCccEE--EEccChhhCC-CHHHHHHHHHHhcCCCcEEEEEC
Confidence 322 23333221 111333 3455678775 44444445557789998877753
No 32
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=86.03 E-value=8.7 Score=39.75 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhcCCCceeEEeeccCCCC-CChHHHHHHHhc--------CCCCCCeeEEEEeccccchHHHHHHHHHH
Q 047247 166 FGHVASNGAILEALDGETKLHIIDMSNTLC-TQWPTLLEALAT--------RNDETPHLKLTVVVTVSLVRLVMKEIGQR 236 (386)
Q Consensus 166 fa~~tANqaILeA~~g~~~VHIIDf~i~~G-~QWpsLiqaLA~--------R~~gpP~LRIT~I~~~~~~~~~l~etg~r 236 (386)
|+-+.||.. ++.-.+|-|||.|+|+- .-=|..| +|+. +...|+....-|..+|+......-.--.|
T Consensus 89 Lt~~LaN~~----l~rG~~v~iiDaDvGQ~ei~pPg~I-SL~~~~s~~~~L~~l~~~~~~FvG~isP~~~~~~~i~~v~r 163 (398)
T COG1341 89 LTTYLANKL----LARGRKVAIIDADVGQSEIGPPGFI-SLAFPESPVISLSELEPFTLYFVGSISPQGFPGRYIAGVAR 163 (398)
T ss_pred HHHHHHHHH----hhcCceEEEEeCCCCCcccCCCceE-EeecccCCCCCHHHcCccceEEEeccCCCCChHHHHHHHHH
Confidence 455677754 44345699999999962 1111111 1111 11245566666665555433333333467
Q ss_pred HHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeeecCCCC
Q 047247 237 MEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLT 316 (386)
Q Consensus 237 L~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ea~~n 316 (386)
|.++|+.. -+.++||+....+= ...++--...|...+|+.|+..|.+-..
T Consensus 164 L~~~a~~~---------------------------~~~ilIdT~GWi~G--~~g~elk~~li~~ikP~~Ii~l~~~~~~- 213 (398)
T COG1341 164 LVDLAKKE---------------------------ADFILIDTDGWIKG--WGGLELKRALIDAIKPDLIIALERANEL- 213 (398)
T ss_pred HHHHhhcc---------------------------CCEEEEcCCCceeC--chHHHHHHHHHhhcCCCEEEEecccccc-
Confidence 88888643 14567777765551 1456666778899999999999764322
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 047247 317 SSRYDFVKCFEECLRFYTLYFEMLEESFVPTSNERLML 354 (386)
Q Consensus 317 ~~~~~F~~RF~eaL~~YsalFDsLda~~~~~s~eR~~i 354 (386)
+++.+=.++..| ....+...++.-.||...
T Consensus 214 ----~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~ 243 (398)
T COG1341 214 ----SPLLEGVESIVY----LKVPDAVAPRSREERKEL 243 (398)
T ss_pred ----chhhhcccCceE----EeccccccccChhHHHHH
Confidence 222333333333 344445556666666554
No 33
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=85.38 E-value=9.5 Score=39.12 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceE
Q 047247 170 ASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFE 249 (386)
Q Consensus 170 tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFe 249 (386)
..-..|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+. +...++.+.++. + ++.++
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDl---S~~~l~~A~~~~----~--~l~v~ 216 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTI---SAEQQKLAQERC----A--GLPVE 216 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeC---CHHHHHHHHHHh----c--cCeEE
Confidence 334456666653444589999998774 4445565543 48999985 223444444433 1 33344
Q ss_pred EEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 250 FKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 250 F~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
|... ++.++. ..=+.|+ +...++|+.....+.+++.+ +-|+|.-.+++.
T Consensus 217 ~~~~----D~~~l~------~~fD~Iv--s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 217 IRLQ----DYRDLN------GQFDRIV--SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEC----chhhcC------CCCCEEE--EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4322 233321 1112332 33446777544456677766 557998766653
No 34
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.75 E-value=33 Score=34.48 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=98.9
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEE
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKV 252 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~ 252 (386)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+..+|+- +.+.|+++.++|. .-..| +++.+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDI---S~~~L~~a~~~L~----~~~~p~l~v~~ 136 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDV---SRSELQRTLAELP----LGNFSHVRCAG 136 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEEC---CHHHHHHHHHhhh----hccCCCeEEEE
Confidence 4445553 22379999999999999999999733 22 367889985 4568888888886 12345 77787
Q ss_pred eecCCccccccccccc--cCCCceEEEeec-ccccccccchHHHHHHHHHh--cCCcEEEEeeecCC---------CCCC
Q 047247 253 ITGLNRLVELTKGTLG--VKEDEAVAVNCI-GALRRVAVEERGAVIQMFQS--LKPKVVTIVEEEAD---------LTSS 318 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~--~~~~EaLaVN~~-~~Lh~l~~~~r~~vL~~ir~--L~P~vvvlvE~ea~---------~n~~ 318 (386)
|.. +.++.- .-|. ...+...+|-+. ..+.++.......||+.+++ |+|.-..++=-|.. +|.+
T Consensus 137 l~g--dy~~~l-~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~ 213 (319)
T TIGR03439 137 LLG--TYDDGL-AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDP 213 (319)
T ss_pred EEe--cHHHHH-hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCC
Confidence 753 222210 0010 012233334443 46777765566689999987 88875555533332 3443
Q ss_pred ccchHHHHHHHHHHHHHHHHH--hhh----cCCCCCHHHHHHHhh
Q 047247 319 RYDFVKCFEECLRFYTLYFEM--LEE----SFVPTSNERLMLERE 357 (386)
Q Consensus 319 ~~~F~~RF~eaL~~YsalFDs--Lda----~~~~~s~eR~~iE~~ 357 (386)
..-...-..+.|++--..++. +|. ....-+++.-.+|..
T Consensus 214 ~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~ 258 (319)
T TIGR03439 214 GGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAF 258 (319)
T ss_pred cchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEE
Confidence 122334446777777777664 332 111224445557776
No 35
>PRK05785 hypothetical protein; Provisional
Probab=84.36 E-value=25 Score=33.16 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=50.1
Q ss_pred eeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccc
Q 047247 184 KLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELT 263 (386)
Q Consensus 184 ~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~ 263 (386)
.-.|+|+|.|.|.- ...|+.+.+ .+||||+.. ..-++.... - .+ + +.. +.+++.
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S---~~Ml~~a~~--------~-~~--~--~~~--d~~~lp 105 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA---ENMLKMNLV--------A-DD--K--VVG--SFEALP 105 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC---HHHHHHHHh--------c-cc--e--EEe--chhhCC
Confidence 34799999999943 334454431 489999952 223332221 1 11 1 221 344432
Q ss_pred ccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 264 KGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 264 ~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
..++..=+|-+.+.||++. + .+.+|+.+ |-|+|.++ ++|
T Consensus 106 -----~~d~sfD~v~~~~~l~~~~-d-~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 106 -----FRDKSFDVVMSSFALHASD-N-IEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred -----CCCCCEEEEEecChhhccC-C-HHHHHHHHHHHhcCceE-EEE
Confidence 3344444566666788864 3 34455554 67899543 344
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=83.85 E-value=12 Score=37.03 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHc
Q 047247 165 TFGHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLM 244 (386)
Q Consensus 165 kfa~~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~l 244 (386)
-=|.+..-..|++-+.=+.--||+|+|.| |=.|+.-.|.+-+ .++|||..+ ...++... +-++..
T Consensus 54 ~eAQ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS---~~Q~~~~~----~r~~~~ 118 (283)
T COG2230 54 EEAQRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS---EEQLAYAE----KRIAAR 118 (283)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC---HHHHHHHH----HHHHHc
Confidence 33455556667777776677799999866 6689999999874 799999863 22333332 334556
Q ss_pred CCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHh-cCCcEEEEe
Q 047247 245 GVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS-LKPKVVTIV 309 (386)
Q Consensus 245 gipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P~vvvlv 309 (386)
|++=..+.+.. ++.++... .=.|-++-.+.|+....-+.+++++++ |+|+-..+.
T Consensus 119 gl~~~v~v~l~--d~rd~~e~--------fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 119 GLEDNVEVRLQ--DYRDFEEP--------FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred CCCcccEEEec--cccccccc--------cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence 76633333322 46655543 112445666888877777889998866 577744433
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=81.29 E-value=4.4 Score=39.24 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=66.9
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVEL 262 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l 262 (386)
...-|+|+|.|-| .|-+.||... ..+|||+... ..++.. ...|..-|+..+|.... .|++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~G-----a~VtgiD~se---~~I~~A----k~ha~e~gv~i~y~~~~----~edl 118 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARLG-----ASVTGIDASE---KPIEVA----KLHALESGVNIDYRQAT----VEDL 118 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHCC-----CeeEEecCCh---HHHHHH----HHhhhhccccccchhhh----HHHH
Confidence 4567899999998 7888888763 8999999532 223222 23466678888887763 5555
Q ss_pred cccccccCCCceEEEeecccccccccchHHHHHH-HHHhcCCcEEEEe
Q 047247 263 TKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQ-MFQSLKPKVVTIV 309 (386)
Q Consensus 263 ~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~-~ir~L~P~vvvlv 309 (386)
.... |-.=||-|+=-|+|++ +|.. |++ ..+-++|.-+++.
T Consensus 119 ~~~~-----~~FDvV~cmEVlEHv~-dp~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 119 ASAG-----GQFDVVTCMEVLEHVP-DPES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred HhcC-----CCccEEEEhhHHHccC-CHHH-HHHHHHHHcCCCcEEEE
Confidence 4432 3344678888899986 5554 555 4566799876655
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=80.75 E-value=18 Score=36.19 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=58.5
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
.++++.+...+-=.|+|+|.|.|. ++..++.+ |+ -+++||++.. ..+.+ .+...+++.. .-...+..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~---~ml~q-~~~~~~~~~~-~~~v~~~~ 177 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTV---LFLCQ-FEAVRKLLDN-DKRAILEP 177 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCH---HHHHH-HHHHHHHhcc-CCCeEEEE
Confidence 345555543333489999999986 34444443 33 2789999522 22222 1222222211 11233332
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEee
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVE 310 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE 310 (386)
. .++++... ..=++ |-|+..|+|+ .+|.+.+-..-+.|+|.-.++.+
T Consensus 178 ~----~ie~lp~~----~~FD~--V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 L----GIEQLHEL----YAFDT--VFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred C----CHHHCCCC----CCcCE--EEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEE
Confidence 2 35555432 11133 3345557886 46665555555779999666554
No 39
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=80.04 E-value=46 Score=30.07 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceE
Q 047247 170 ASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFE 249 (386)
Q Consensus 170 tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFe 249 (386)
...+.+++.+.-.+...|+|+|.|.|. +...++.+ +|+..++++++.. ...++.+.+++. .+-...
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~---~~~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS---SEMLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC---HHHHHHHHHHhc-----cCCCce
Confidence 334556666655567799999999985 23334433 2334789999852 234444443332 222334
Q ss_pred EEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHH-HHhcCCcEEEE-eeec
Q 047247 250 FKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQM-FQSLKPKVVTI-VEEE 312 (386)
Q Consensus 250 F~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~-ir~L~P~vvvl-vE~e 312 (386)
|... ++.++. ..++..=+|-+.+.+|++. ++ ..+|+. .+.|+|.-.++ ++..
T Consensus 92 ~~~~----d~~~~~-----~~~~~~D~i~~~~~~~~~~-~~-~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 92 FIQA----DAEALP-----FEDNSFDAVTIAFGLRNVT-DI-QKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEec----chhcCC-----CCCCcEEEEEEeeeeCCcc-cH-HHHHHHHHHHcCCCcEEEEEEec
Confidence 4332 233222 1122233444555677764 33 445554 46678886554 4443
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=79.46 E-value=44 Score=30.40 Aligned_cols=97 Identities=15% Similarity=0.258 Sum_probs=51.7
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTK 264 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~ 264 (386)
-+|+|+|.|.|. .++.=+. .. |..++|||+.. ...++. +.+.++..|++ .+..+.. +++++..
T Consensus 44 ~~vLDiGcGtG~--~s~~la~--~~---~~~~V~~iD~s---~~~~~~----a~~~~~~~~~~-~i~~i~~--d~~~~~~ 106 (181)
T TIGR00138 44 KKVIDIGSGAGF--PGIPLAI--AR---PELKLTLLESN---HKKVAF----LREVKAELGLN-NVEIVNG--RAEDFQH 106 (181)
T ss_pred CeEEEecCCCCc--cHHHHHH--HC---CCCeEEEEeCc---HHHHHH----HHHHHHHhCCC-CeEEEec--chhhccc
Confidence 489999999983 2221122 21 34689999952 222322 23344556764 2333432 4555421
Q ss_pred cccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 265 GTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 265 ~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
...=+.|+.|+ +++ .+.+++.+ +-|+|.-++++.
T Consensus 107 ----~~~fD~I~s~~---~~~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 ----EEQFDVITSRA---LAS-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ----cCCccEEEehh---hhC-----HHHHHHHHHHhcCCCCEEEEE
Confidence 11224666555 443 33455654 448999888875
No 41
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=78.92 E-value=28 Score=34.83 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=56.3
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
|+..+..-+--+|+|+|.|.|. +...++.+ |+- +++||++.. ..+.+. +...+++. ...+.+|...
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g~~--~V~GiD~S~---~~l~q~-~a~~~~~~-~~~~i~~~~~- 179 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--GAK--LVVGIDPSQ---LFLCQF-EAVRKLLG-NDQRAHLLPL- 179 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCH---HHHHHH-HHHHHhcC-CCCCeEEEeC-
Confidence 3444432222379999999984 23345554 322 599999521 122111 11112221 1223445443
Q ss_pred cCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEee
Q 047247 255 GLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVE 310 (386)
Q Consensus 255 ~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE 310 (386)
+++++... ..=++ |-|+..|||+ .++.+.+-+.-+.|+|.-.++.+
T Consensus 180 ---d~e~lp~~----~~FD~--V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 180 ---GIEQLPAL----KAFDT--VFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---CHHHCCCc----CCcCE--EEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEE
Confidence 35555321 11133 3355568886 36666555566778999766654
No 42
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=76.89 E-value=21 Score=32.66 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=51.6
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVEL 262 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l 262 (386)
+..+|+|+|.|.|.- ...|+.+ + |..++|+|+.. ...++.+..++. -.++| +.. +++++
T Consensus 34 ~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~---~~~~~~~~~~~~-------~~~~~--~~~--d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDIS---AGMLAQAKTKLS-------ENVQF--ICG--DAEKL 92 (240)
T ss_pred CCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeCh---HHHHHHHHHhcC-------CCCeE--Eec--chhhC
Confidence 346899999999963 3333333 2 45679999952 223333333322 12223 321 34433
Q ss_pred cccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 263 TKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 263 ~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
.. .++-.=+|-+...||++. + ...+|+.+ +.|+|.-+++..
T Consensus 93 ~~-----~~~~fD~vi~~~~l~~~~-~-~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 93 PL-----EDSSFDLIVSNLALQWCD-D-LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CC-----CCCceeEEEEhhhhhhcc-C-HHHHHHHHHHHcCCCcEEEEE
Confidence 21 122122233445577763 3 34566665 557998766664
No 43
>PRK08317 hypothetical protein; Provisional
Probab=76.09 E-value=61 Score=29.37 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=56.2
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
+++.+.-...-.|+|+|.|.|. |.. .++.+- +|.-+++||+.. ...++.+.++ ....+...+|...
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~---~~~~~~a~~~----~~~~~~~~~~~~~- 76 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRS---EAMLALAKER----AAGLGPNVEFVRG- 76 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCC---HHHHHHHHHH----hhCCCCceEEEec-
Confidence 5566665556689999999874 333 333332 245689999952 2233333332 1112233344332
Q ss_pred cCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 255 GLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 255 ~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
+++++. ...+..=+|-+...++++. ++...+=+..+.|+|.-.++.
T Consensus 77 ---d~~~~~-----~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 77 ---DADGLP-----FPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred ---ccccCC-----CCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEE
Confidence 232222 1122222333445567664 344333344466899976554
No 44
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=75.81 E-value=22 Score=30.19 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccc
Q 047247 181 GETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLV 260 (386)
Q Consensus 181 g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e 260 (386)
..+.-.|+|+|.|.| . +.+.|+.+ |. ++||++... ..++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~~---~~~~~-----------~~~~~~~~~~~------ 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDISP---QMIEK-----------RNVVFDNFDAQ------ 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESSH---HHHHH-----------TTSEEEEEECH------
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECCH---HHHhh-----------hhhhhhhhhhh------
Confidence 455669999999998 3 45555555 32 999999522 22222 22222111110
Q ss_pred cccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe-eec
Q 047247 261 ELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV-EEE 312 (386)
Q Consensus 261 ~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv-E~e 312 (386)
.....++-.=+|-|...|||+. + ...+|+.| +.|+|.-++++ +..
T Consensus 71 -----~~~~~~~~fD~i~~~~~l~~~~-d-~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 71 -----DPPFPDGSFDLIICNDVLEHLP-D-PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -----THHCHSSSEEEEEEESSGGGSS-H-HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -----hhhccccchhhHhhHHHHhhcc-c-HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 1111233455566667899997 3 44566665 55799755554 443
No 45
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=73.66 E-value=20 Score=35.96 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=56.2
Q ss_pred eeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCC--ceEEEEeecCCcccc
Q 047247 184 KLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGV--PFEFKVITGLNRLVE 261 (386)
Q Consensus 184 ~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgi--pFeF~~v~~~~~~e~ 261 (386)
...|+|+|.|.|. +...|+.+ + .++|||+.. ...++...++ ++..++ ..+|..- +.++
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s---~~~i~~Ar~~----~~~~~~~~~i~~~~~----dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAV---DKNVKIARLH----ADMDPVTSTIEYLCT----TAEK 191 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCC---HHHHHHHHHH----HHhcCcccceeEEec----CHHH
Confidence 3479999999997 45566643 2 489999952 2233333222 222222 3444332 3444
Q ss_pred ccccccccCCCceEEEeecccccccccchHHHHHHHHH-hcCCcEEEEee
Q 047247 262 LTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQ-SLKPKVVTIVE 310 (386)
Q Consensus 262 l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir-~L~P~vvvlvE 310 (386)
+.. .++..=+|-|...|||+. ++ +.+|+.++ -|+|.-.+++.
T Consensus 192 l~~-----~~~~FD~Vi~~~vLeHv~-d~-~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 LAD-----EGRKFDAVLSLEVIEHVA-NP-AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hhh-----ccCCCCEEEEhhHHHhcC-CH-HHHHHHHHHHcCCCcEEEEE
Confidence 432 122233455566789986 33 46777664 57999877764
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=73.04 E-value=1.1 Score=35.89 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=42.2
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccccc
Q 047247 188 IDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTL 267 (386)
Q Consensus 188 IDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L 267 (386)
+|+|.|.|.==..|++.+ |..++||++.... .++.+.+|+.+.- +..+++..+.. .+..... .
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~---~l~~a~~~~~~~~---~~~~~~~~~~~---~~~~~~~-~ 63 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPS---MLERARERLAELG---NDNFERLRFDV---LDLFDYD-P 63 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSS---TTSTTCCCHHHCT------EEEEE--S---SS---CC-C
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHH---HHHHHHHHhhhcC---CcceeEEEeec---CChhhcc-c
Confidence 588888886666666665 7899999996432 2333333333322 22222322221 1111110 0
Q ss_pred ccCCCceEEEeecccccccccchHHHHHHHHHh-cCCcEE
Q 047247 268 GVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS-LKPKVV 306 (386)
Q Consensus 268 ~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P~vv 306 (386)
. ..=+.|+.+ ..|||+ ..++.+|+.+++ |+|.-+
T Consensus 64 ~-~~fD~V~~~--~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 64 P-ESFDLVVAS--NVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp -----SEEEEE---TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred c-cccceehhh--hhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 0 122344443 558888 445578887755 688644
No 47
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=71.11 E-value=67 Score=32.50 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=62.7
Q ss_pred HHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 172 NGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 172 NqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
...+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+|+. +...++.+.+++. ..++..++.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDi---s~~Al~~A~~nl~----~n~l~~~~~ 250 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDV---SAAALESSRATLA----ANGLEGEVF 250 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEEC---CHHHHHHHHHHHH----HcCCCCEEE
Confidence 3445555543323379999999996 444555552 4578999995 3345655555443 345665554
Q ss_pred EeecCCccccccccccccCCCceEEEeeccccccccc---chHHHHHHH-HHhcCCcEEEEee
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAV---EERGAVIQM-FQSLKPKVVTIVE 310 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~---~~r~~vL~~-ir~L~P~vvvlvE 310 (386)
... -.+.+ -.+=+.|+.|-.| |.... .....+++. .+.|+|.-..+..
T Consensus 251 ~~D---~~~~~------~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 251 ASN---VFSDI------KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred Ecc---ccccc------CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 321 11111 1223677777664 44221 223455554 4668998665543
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=71.06 E-value=48 Score=34.12 Aligned_cols=121 Identities=14% Similarity=0.033 Sum_probs=63.4
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
..+++.+.....=.|+|+|.|.|. +--.|+.+. |..+||+|+. +...++.+.+++......-.-.++|..
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~---S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDE---SPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEEC---CHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 345566543222379999999996 444555553 5689999995 334555555554322111011234432
Q ss_pred eecCCccccccccccccCCCceEEEeecccccc-cccchHHHHHH-HHHhcCCcEEEEeee
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRR-VAVEERGAVIQ-MFQSLKPKVVTIVEE 311 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~-l~~~~r~~vL~-~ir~L~P~vvvlvE~ 311 (386)
-. -++.+.. ..=+.|+.|-.|...+ +...-...+++ .-+.|+|.-.+.++.
T Consensus 288 ~D---~l~~~~~-----~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 NN---ALSGVEP-----FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cc---ccccCCC-----CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 11 1222211 1225777777764332 22222334544 446789997776664
No 49
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=70.95 E-value=52 Score=30.96 Aligned_cols=102 Identities=18% Similarity=0.107 Sum_probs=56.0
Q ss_pred eeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEE-------------
Q 047247 184 KLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEF------------- 250 (386)
Q Consensus 184 ~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF------------- 250 (386)
.-.|+|.|.|.|. =+..||.+ | ..+|||+.. ...++. +++..|+..+.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~--G---~~V~avD~s---~~Ai~~-------~~~~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ--G---HEVLGVELS---ELAVEQ-------FFAENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC--C---CeEEEEccC---HHHHHH-------HHHHcCCCccccccccccccccCc
Confidence 3478999999973 34456665 2 689999952 223332 23445554321
Q ss_pred -EEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHh-cCCc--EEEEee
Q 047247 251 -KVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS-LKPK--VVTIVE 310 (386)
Q Consensus 251 -~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P~--vvvlvE 310 (386)
....+ ++.++.+..+ +..=.|.-...+|++..+.|..++..|.+ |+|. +++++.
T Consensus 99 v~~~~~--D~~~l~~~~~----~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 99 ITIYCG--DFFALTAADL----ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eEEEEC--cccCCCcccC----CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 10110 1222222211 22223333345788888889999998866 7999 555443
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=70.91 E-value=86 Score=28.81 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=54.5
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCcccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLVELT 263 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e~l~ 263 (386)
-.|+|+|.|.|. .++. ++.+. |..++|+|+. +...++.+ .+.++..|++ ++|..- +.+++.
T Consensus 47 ~~VLDiGcGtG~--~al~--la~~~---~~~~V~giD~---s~~~l~~A----~~~~~~~~l~~i~~~~~----d~~~~~ 108 (187)
T PRK00107 47 ERVLDVGSGAGF--PGIP--LAIAR---PELKVTLVDS---LGKKIAFL----REVAAELGLKNVTVVHG----RAEEFG 108 (187)
T ss_pred CeEEEEcCCCCH--HHHH--HHHHC---CCCeEEEEeC---cHHHHHHH----HHHHHHcCCCCEEEEec----cHhhCC
Confidence 468999999983 2332 22221 3469999985 22233333 3445556765 444333 344443
Q ss_pred ccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 264 KGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 264 ~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
. -.+-+.++.|+. ...+.+++.+ +.|+|.-.+++.
T Consensus 109 ~----~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 109 Q----EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred C----CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 123467776652 2345677764 788999887775
No 51
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=70.36 E-value=66 Score=28.47 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV 252 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~ 252 (386)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.. ...++.+.+++.. .+ .+..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~---~~~~~~~~~~~~~------~~-~v~i 63 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID---PRLAPRLREKFAA------AD-NLTV 63 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC---HHHHHHHHHHhcc------CC-CEEE
Confidence 346666653334489999999975 55556666 2 489999852 2234333333321 11 2333
Q ss_pred eecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHh--cCCcEEEEeeecC
Q 047247 253 ITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS--LKPKVVTIVEEEA 313 (386)
Q Consensus 253 v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~--L~P~vvvlvE~ea 313 (386)
+.. ++.++..... .-..|+-|..+.+- -+.+.+.+.. +.+..+++++.|.
T Consensus 64 i~~--D~~~~~~~~~---~~d~vi~n~Py~~~------~~~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 64 IHG--DALKFDLPKL---QPYKVVGNLPYNIS------TPILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred EEC--chhcCCcccc---CCCEEEECCCcccH------HHHHHHHHhcCCCcceEEEEEEHHH
Confidence 432 3444432211 12456666555321 2333334433 3477888887763
No 52
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=69.89 E-value=59 Score=30.28 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=59.0
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG 265 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~ 265 (386)
.|+|++.|.| .--+.+|+... -+||+|+. ....++.+.++ ++..|+. ....+.. ++.+.-+.
T Consensus 56 ~vLDl~~GsG---~l~l~~lsr~a-----~~V~~vE~---~~~a~~~a~~N----l~~~~~~-~v~~~~~--D~~~~l~~ 117 (199)
T PRK10909 56 RCLDCFAGSG---ALGLEALSRYA-----AGATLLEM---DRAVAQQLIKN----LATLKAG-NARVVNT--NALSFLAQ 117 (199)
T ss_pred EEEEcCCCcc---HHHHHHHHcCC-----CEEEEEEC---CHHHHHHHHHH----HHHhCCC-cEEEEEc--hHHHHHhh
Confidence 6899999998 22344565431 48999985 22233333333 4444553 2233322 23221111
Q ss_pred ccccCCCceEEEeecccccccccchHHHHHHHHHh---cCCcEEEEeeecCCCC
Q 047247 266 TLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS---LKPKVVTIVEEEADLT 316 (386)
Q Consensus 266 ~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~---L~P~vvvlvE~ea~~n 316 (386)
. ..+=+.|++|=.+. ..-.+.+++.|.. ++|+-++.+|.....+
T Consensus 118 -~-~~~fDlV~~DPPy~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 118 -P-GTPHNVVFVDPPFR-----KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred -c-CCCceEEEECCCCC-----CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 1 11236777777752 1334567788877 6999999999766543
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=69.87 E-value=42 Score=32.05 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=51.0
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCcccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLVELT 263 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e~l~ 263 (386)
=+|+|+|.|.|.- ..++ +... | +.-+|+||+.. ...++.+.++ ++..|++ .+|.. . +++++.
T Consensus 79 ~~VLDiG~G~G~~-~~~~---a~~~-g-~~~~v~gvD~s---~~~l~~A~~~----~~~~g~~~v~~~~--~--d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGFD-CFLA---ARRV-G-PTGKVIGVDMT---PEMLAKARAN----ARKAGYTNVEFRL--G--EIEALP 141 (272)
T ss_pred CEEEEeCCCCCHH-HHHH---HHHh-C-CCCEEEEECCC---HHHHHHHHHH----HHHcCCCCEEEEE--c--chhhCC
Confidence 3899999998742 2222 2221 1 34589999852 2234333332 3345553 33322 1 344443
Q ss_pred ccccccCCC--ceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 264 KGTLGVKED--EAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 264 ~~~L~~~~~--EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
..++ +.|+.|++ +|+.. +....+=...|-|+|.-.+++
T Consensus 142 -----~~~~~fD~Vi~~~v--~~~~~-d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 -----VADNSVDVIISNCV--INLSP-DKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred -----CCCCceeEEEEcCc--ccCCC-CHHHHHHHHHHHcCCCcEEEE
Confidence 2222 35555665 45543 444444455677899955544
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=68.46 E-value=36 Score=31.28 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=51.7
Q ss_pred CceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCC--ceEEEEeecCCcc
Q 047247 182 ETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGV--PFEFKVITGLNRL 259 (386)
Q Consensus 182 ~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgi--pFeF~~v~~~~~~ 259 (386)
.+.-.|+|+|.|.|.- ...|+.+ + .++|||+.. ...++.+.+++ ...++ ...|... ++
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s---~~~i~~a~~~~----~~~~~~~~i~~~~~----d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS---PQMVEEARERA----PEAGLAGNITFEVG----DL 121 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC---HHHHHHHHHHH----HhcCCccCcEEEEc----Cc
Confidence 3456899999999853 3345544 2 349999952 23444444333 33444 3344432 23
Q ss_pred ccccccccccCCCceEEEeecccccccccchHHHHHHHHHhc-CCcEEEE
Q 047247 260 VELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSL-KPKVVTI 308 (386)
Q Consensus 260 e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L-~P~vvvl 308 (386)
+... ..=+.++ |...+||+.......+++.+.++ ++.+++.
T Consensus 122 ~~~~------~~fD~v~--~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLL------GRFDTVV--CLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcc------CCcCEEE--EcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 2211 1113333 33446776655566778877665 4444443
No 55
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=68.26 E-value=1.1e+02 Score=28.81 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceE
Q 047247 170 ASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFE 249 (386)
Q Consensus 170 tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFe 249 (386)
.....+++.+...+.-.|+|+|.|.|. +.+.|+.+ | -+++|++.. ...++. |+.......
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~~v~~~D~s---~~~l~~--------a~~~~~~~~ 88 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G---SQVTALDLS---PPMLAQ--------ARQKDAADH 88 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C---CeEEEEECC---HHHHHH--------HHhhCCCCC
Confidence 344555666665445579999999983 55666654 2 489999852 223332 222221112
Q ss_pred EEEeecCCccccccccccccCCC--ceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 250 FKVITGLNRLVELTKGTLGVKED--EAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 250 F~~v~~~~~~e~l~~~~L~~~~~--EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
| +.. +++++. ..++ +.|+ +.+.+|+.. ++...+-+..+-|+|.-.++.
T Consensus 89 ~--~~~--d~~~~~-----~~~~~fD~V~--s~~~l~~~~-d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 89 Y--LAG--DIESLP-----LATATFDLAW--SNLAVQWCG-NLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred E--EEc--CcccCc-----CCCCcEEEEE--ECchhhhcC-CHHHHHHHHHHHcCCCeEEEE
Confidence 2 211 344433 2222 3443 444566543 444444445577899755554
No 56
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=66.93 E-value=52 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=25.4
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
.|.+.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEI 44 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeC
Confidence 344555432 279999999984 5566765532 35689984
No 57
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=66.77 E-value=1.3e+02 Score=29.12 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=81.1
Q ss_pred cCchHHHHH-HHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHH
Q 047247 160 VSPWTTFGH-VASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRME 238 (386)
Q Consensus 160 ~~P~~kfa~-~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~ 238 (386)
..+++.|+. .+=+++..+.+.-.+--+|+|.+.|.|- +.-.|+..-+ .-+|||++. +..-|+...+|+.
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd----~a~~~~k~~g---~g~v~~~D~---s~~ML~~a~~k~~ 96 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD----MALLLAKSVG---TGEVVGLDI---SESMLEVAREKLK 96 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH----HHHHHHHhcC---CceEEEEEC---CHHHHHHHHHHhh
Confidence 556667764 5566666666654478899999999963 3333444433 689999995 2334554444443
Q ss_pred HHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHH-HHHhcCCcEEEEeeecCCC
Q 047247 239 KFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQ-MFQSLKPKVVTIVEEEADL 315 (386)
Q Consensus 239 ~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~-~ir~L~P~vvvlvE~ea~~ 315 (386)
..|+.- +.-|.+ +.|+| ...++-.=+|.+.|.||++. ..+.+|+ +-|=|+|...+++-.=...
T Consensus 97 ----~~~~~~-i~fv~~--dAe~L-----Pf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 97 ----KKGVQN-VEFVVG--DAENL-----PFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred ----ccCccc-eEEEEe--chhhC-----CCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 334332 333332 34444 45556666799999999986 3445555 4566899997777443333
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=66.72 E-value=40 Score=31.02 Aligned_cols=108 Identities=8% Similarity=0.051 Sum_probs=55.5
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCcc-c
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRL-V 260 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~-e 260 (386)
+.-.|+|+|.|.|.-...|.+ +. |.-++|||+. +...++.+.+++ +..+++ ++|.. + ++ +
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~---s~~~i~~a~~~~----~~~~~~~v~~~~--~--d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEV---HEPGVGKALKKI----EEEGLTNLRLLC--G--DAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEe---chHHHHHHHHHH----HHcCCCCEEEEe--c--CHHH
Confidence 345799999999876555433 31 3468999995 223444333333 333542 44432 2 34 4
Q ss_pred cccccccccCCCceEEEeecccc----cccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 261 ELTKGTLGVKEDEAVAVNCIGAL----RRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 261 ~l~~~~L~~~~~EaLaVN~~~~L----h~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
.+... +.-..=+.+++|..... |+........+|+.+ +-|+|.-+++.
T Consensus 102 ~l~~~-~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLDM-FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHHH-cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 43311 11111245666654322 221111245677776 47899866654
No 59
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=66.61 E-value=90 Score=31.51 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=64.0
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHH---cCCceEEEEeecCCcc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARL---MGVPFEFKVITGLNRL 259 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~---lgipFeF~~v~~~~~~ 259 (386)
...+|+|+|.|.|. .|.+-...+ .=++.||+. ....++++.+|..+.-+. -...+.|.+..- ..
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~-----i~~~vg~Di---s~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~--~~ 128 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAK-----IKHYVGIDI---SEESIEEARERYKQLKKRNNSKQYRFDFIAEFI--AA 128 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES----HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEE--ES
T ss_pred CCCeEEEecCCCch---hHHHHHhcC-----CCEEEEEeC---CHHHHHHHHHHHHHhccccccccccccchhhee--cc
Confidence 67899999999885 233333332 246788885 445788998888655542 233444544321 01
Q ss_pred ccccc---cccccCCCceEEEeecccccccccc--hHHHHHHHH-HhcCCcEEEEe
Q 047247 260 VELTK---GTLGVKEDEAVAVNCIGALRRVAVE--ERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 260 e~l~~---~~L~~~~~EaLaVN~~~~Lh~l~~~--~r~~vL~~i-r~L~P~vvvlv 309 (386)
+.... +.+.-..+..=+|+|.|+||+.-.+ ....+|+.| ..|+|.-++++
T Consensus 129 D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 129 DCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp TTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11211 1122223467799999999998633 233466655 66788866654
No 60
>PRK06922 hypothetical protein; Provisional
Probab=65.38 E-value=51 Score=36.58 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=55.4
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTK 264 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~ 264 (386)
-.|+|+|.|.|. +...|+.+. |..++|||+.+ ...++.+..++ ...|.++++ +.+ +..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS---~~MLe~Ararl----~~~g~~ie~--I~g--Da~dLp- 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS---ENVIDTLKKKK----QNEGRSWNV--IKG--DAINLS- 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC---HHHHHHHHHHh----hhcCCCeEE--EEc--chHhCc-
Confidence 479999999983 445666653 45899999963 23454444432 233555443 321 222221
Q ss_pred cccccCCCceEEEeeccccccccc-----------chHHHHHHH-HHhcCCcEEEEe
Q 047247 265 GTLGVKEDEAVAVNCIGALRRVAV-----------EERGAVIQM-FQSLKPKVVTIV 309 (386)
Q Consensus 265 ~~L~~~~~EaLaVN~~~~Lh~l~~-----------~~r~~vL~~-ir~L~P~vvvlv 309 (386)
.. ..++.+=+|-+.+.+|++.. .....+|+. .+.|+|.-.+++
T Consensus 481 ~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 481 SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 00 23333334445556776531 123445554 478999854444
No 61
>PLN03075 nicotianamine synthase; Provisional
Probab=65.24 E-value=66 Score=32.09 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=59.6
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCC--ceEEEEeecCCcccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGV--PFEFKVITGLNRLVELT 263 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgi--pFeF~~v~~~~~~e~l~ 263 (386)
.|+|+|.|.|.=|..++.+-. .|.-++|||+.. +...+..+++.+- ..|+ ..+|+... +-++.
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d----~~ai~~Ar~~~~~--~~gL~~rV~F~~~D----a~~~~ 190 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDID----PSANDVARRLVSS--DPDLSKRMFFHTAD----VMDVT 190 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCC----HHHHHHHHHHhhh--ccCccCCcEEEECc----hhhcc
Confidence 389999998766666554432 134599999952 2333344433321 2333 35666542 22221
Q ss_pred ccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEeee
Q 047247 264 KGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVEE 311 (386)
Q Consensus 264 ~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE~ 311 (386)
.. ..+=+.|.+. .||++....+..+|+.| +.|+|.-++++.-
T Consensus 191 ~~---l~~FDlVF~~---ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 ES---LKEYDVVFLA---ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cc---cCCcCEEEEe---cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 11 1222344444 78888655566677666 5599999998865
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=64.21 E-value=34 Score=31.21 Aligned_cols=127 Identities=12% Similarity=0.112 Sum_probs=63.4
Q ss_pred eeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccc
Q 047247 184 KLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELT 263 (386)
Q Consensus 184 ~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~ 263 (386)
.--|+|+|.|.|. ++-.||.+. |...++||+. ....++.+.+++ +..|+. ....+.+ ++.++.
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~---~~~~l~~a~~~~----~~~~l~-ni~~i~~--d~~~~~ 79 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEI---HTPIVLAANNKA----NKLGLK-NLHVLCG--DANELL 79 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEe---eHHHHHHHHHHH----HHhCCC-CEEEEcc--CHHHHH
Confidence 3469999999975 444555543 4578999995 233454444443 344554 2333432 344332
Q ss_pred ccccccCCCceEEEeecccccccccc----hHHHHHHHH-HhcCCcEEEEeeecCCCCCCccchHHHHHHHHHHH
Q 047247 264 KGTLGVKEDEAVAVNCIGALRRVAVE----ERGAVIQMF-QSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFY 333 (386)
Q Consensus 264 ~~~L~~~~~EaLaVN~~~~Lh~l~~~----~r~~vL~~i-r~L~P~vvvlvE~ea~~n~~~~~F~~RF~eaL~~Y 333 (386)
...+.-..=+.+++|+..--++-... -.+.+|+.+ +.|+|.-.+.+.-+. . .+...+.+++..+
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~--~~~~~~~~~~~~~ 148 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----E--PLFEDMLKVLSEN 148 (194)
T ss_pred HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----H--HHHHHHHHHHHhC
Confidence 11111011135666653211110001 125677765 667999877664322 2 3444455555443
No 63
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=64.20 E-value=11 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=26.1
Q ss_pred ceEEEeecc-cccccc-cchHHHHHHHHHhcCCcEEEEeee
Q 047247 273 EAVAVNCIG-ALRRVA-VEERGAVIQMFQSLKPKVVTIVEE 311 (386)
Q Consensus 273 EaLaVN~~~-~Lh~l~-~~~r~~vL~~ir~L~P~vvvlvE~ 311 (386)
|.+-|||.. .++ +. ...++.++++|+.++|+-+++|-.
T Consensus 1 e~i~v~a~v~~~~-fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 1 EMIPVRARVEQID-FSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CEEE--SEEEESG-CSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred CEEEeEEEEEEEe-ecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 355677753 444 33 467899999999999999999843
No 64
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=63.92 E-value=21 Score=30.90 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=27.8
Q ss_pred cCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 179 LDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 179 ~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
-...+..+|||+|-|.|.==-.|-..|... .|.++|+||+.
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~ 61 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDC 61 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEEC
Confidence 456888999999999985322222223222 26799999995
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=62.43 E-value=38 Score=32.73 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
+|.-+.-+.---|+|+|.|-|.+= +-|+.|= |-=.||||++ +.+-+++ |+...+...|..-
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDs---S~~Mla~--------Aa~rlp~~~f~~a- 82 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDS---SPAMLAK--------AAQRLPDATFEEA- 82 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccC---CHHHHHH--------HHHhCCCCceecc-
Confidence 344455566668999999998764 4455554 4468999995 2233333 4445555555432
Q ss_pred cCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeeecCCCCCC
Q 047247 255 GLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEEEADLTSS 318 (386)
Q Consensus 255 ~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ea~~n~~ 318 (386)
++.+.+++ .+-..|.-|.+|+ -+ .+.-+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 83 ---Dl~~w~p~----~~~dllfaNAvlq--Wl-pdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 83 ---DLRTWKPE----QPTDLLFANAVLQ--WL-PDHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred ---cHhhcCCC----Cccchhhhhhhhh--hc-cccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 23333433 2335667777753 33 3556677788889999998888655555443
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=60.55 E-value=1e+02 Score=28.51 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=41.6
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCcccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLVE 261 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e~ 261 (386)
+..+|+|+|.|.| .+...++.+. |..+++||+.. ...++.+.+ .++..|++ ++| +.. ++.+
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~---~~~~~~a~~----~~~~~~~~~~~~--~~~--d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS---PEALAVARK----NAARLGLDNVTF--LQS--DWFE 148 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC---HHHHHHHHH----HHHHcCCCeEEE--EEC--chhc
Confidence 3458999999998 3444455432 34699999952 223433333 33445665 333 322 2322
Q ss_pred ccccccccCCCceEEEeeccc
Q 047247 262 LTKGTLGVKEDEAVAVNCIGA 282 (386)
Q Consensus 262 l~~~~L~~~~~EaLaVN~~~~ 282 (386)
. +.-..-+.|+.|-.+.
T Consensus 149 ~----~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 149 P----LPGGKFDLIVSNPPYI 165 (251)
T ss_pred c----CcCCceeEEEECCCCC
Confidence 1 1112336777776654
No 67
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=60.15 E-value=35 Score=31.59 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=84.4
Q ss_pred cCchHHHHHHHHHHHHHhhc--CCC---------------------ceeEEeeccCCC---CCChHHHHHHHhcCCCCCC
Q 047247 160 VSPWTTFGHVASNGAILEAL--DGE---------------------TKLHIIDMSNTL---CTQWPTLLEALATRNDETP 213 (386)
Q Consensus 160 ~~P~~kfa~~tANqaILeA~--~g~---------------------~~VHIIDf~i~~---G~QWpsLiqaLA~R~~gpP 213 (386)
.+|..-|||-..-...+-++ .+. .+|+||.|=-+- +..--.+|.+|+.+.
T Consensus 13 ~~~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~---- 88 (184)
T TIGR01626 13 IFPSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAK---- 88 (184)
T ss_pred HhHHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcC----
Confidence 78888888866665555444 111 279999986553 467778999996652
Q ss_pred eeEE------EEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccccccccccCC-Cce-EEEeecccccc
Q 047247 214 HLKL------TVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKE-DEA-VAVNCIGALRR 285 (386)
Q Consensus 214 ~LRI------T~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~-~Ea-LaVN~~~~Lh~ 285 (386)
+.+ |||.. .+....++.-+..|+++.++.|-|.++.- +-+......+++.. .++ ++||-...+..
T Consensus 89 -~~~~~y~~t~~IN~----dd~~~~~~~fVk~fie~~~~~~P~~~vll--D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~ 161 (184)
T TIGR01626 89 -FPPVKYQTTTIINA----DDAIVGTGMFVKSSAKKGKKENPWSQVVL--DDKGAVKNAWQLNSEDSAIIVLDKTGKVKF 161 (184)
T ss_pred -CCcccccceEEEEC----ccchhhHHHHHHHHHHHhcccCCcceEEE--CCcchHHHhcCCCCCCceEEEECCCCcEEE
Confidence 667 88873 23456788889999999998887766642 11222223455544 367 68998887665
Q ss_pred ccc-----chHHHHHHHHHhc
Q 047247 286 VAV-----EERGAVIQMFQSL 301 (386)
Q Consensus 286 l~~-----~~r~~vL~~ir~L 301 (386)
.-. ...+.++..|+++
T Consensus 162 ~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 162 VKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 431 2234466666654
No 68
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=59.61 E-value=75 Score=30.74 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=33.5
Q ss_pred cCchHHHHH-HHHHHH----HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 160 VSPWTTFGH-VASNGA----ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 160 ~~P~~kfa~-~tANqa----ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
..|--++++ |..|+. |++.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~ 72 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEI 72 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEEC
Confidence 344444444 434433 4455544455689999999984 56666666 22 8999985
No 69
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=58.73 E-value=1.4e+02 Score=27.07 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=55.7
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
+++.+.-....+|+|+|.|.|. +...++.+ +|+..++++++.. ...++.+.+++... .+..+..|...
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s---~~~~~~a~~~~~~~--~~~~~~~~~~~- 110 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS---EGMLAVGREKLRDL--GLSGNVEFVQG- 110 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC---HHHHHHHHHhhccc--ccccCeEEEec-
Confidence 3444443345789999999985 22233332 2346899999952 22344333333210 02223444332
Q ss_pred cCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 255 GLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 255 ~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
++.++. +....-+.|+ +.+.||++. + .+.+|+.+ +.|+|.-++++
T Consensus 111 ---d~~~~~---~~~~~~D~I~--~~~~l~~~~-~-~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 111 ---DAEALP---FPDNSFDAVT--IAFGLRNVP-D-IDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ---ccccCC---CCCCCccEEE--EecccccCC-C-HHHHHHHHHHhccCCcEEEE
Confidence 233322 1111123333 445577764 3 34556554 66788865544
No 70
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=57.94 E-value=1.1e+02 Score=28.73 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=50.7
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEE--------------
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEF-------------- 250 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF-------------- 250 (386)
-.|+|+|.|.|. =...||.+ | ..+|||+.. ...++ .+++..|+....
T Consensus 36 ~rvLd~GCG~G~----da~~LA~~--G---~~V~gvD~S---~~Ai~-------~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 36 ARVFVPLCGKSL----DLAWLAEQ--G---HRVLGVELS---EIAVE-------QFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred CeEEEeCCCchh----HHHHHHhC--C---CeEEEEeCC---HHHHH-------HHHHHcCCCcceeccccceeeecCce
Confidence 489999999983 23445665 2 689999952 22333 223344444321
Q ss_pred EEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcE
Q 047247 251 KVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKV 305 (386)
Q Consensus 251 ~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~v 305 (386)
+.+.+ ++.+++++.. ..--+++- ...+||+..+.|..+++.| +.|+|.-
T Consensus 97 ~~~~~--D~~~~~~~~~---~~fD~i~D-~~~~~~l~~~~R~~~~~~l~~lLkpgG 146 (213)
T TIGR03840 97 EIFCG--DFFALTAADL---GPVDAVYD-RAALIALPEEMRQRYAAHLLALLPPGA 146 (213)
T ss_pred EEEEc--cCCCCCcccC---CCcCEEEe-chhhccCCHHHHHHHHHHHHHHcCCCC
Confidence 11211 2333332211 11122222 2335678777888888877 5579984
No 71
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=56.99 E-value=68 Score=29.42 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=52.2
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG 265 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~ 265 (386)
+|+|+|.|.|. +...++.+. |..++|||+. +...++...+++ +..|+.-....+.. +.++....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~---s~~~~~~a~~~~----~~~gl~~~i~~~~~--d~~~~~~~ 65 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTI---SPEQAEVGRERI----RALGLQGRIRIFYR--DSAKDPFP 65 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEEC---CHHHHHHHHHHH----HhcCCCcceEEEec--ccccCCCC
Confidence 68999999885 344555543 3468999985 223344343333 34455433333321 22221111
Q ss_pred ccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 266 TLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 266 ~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
..=+.| -+...+||+. + ...+|+.+ +.|+|.-.+++
T Consensus 66 ----~~fD~I--~~~~~l~~~~-~-~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 66 ----DTYDLV--FGFEVIHHIK-D-KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred ----CCCCEe--ehHHHHHhCC-C-HHHHHHHHHHHcCCCCEEEE
Confidence 111232 2444567764 3 45677766 55899966554
No 72
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=54.13 E-value=1e+02 Score=27.82 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEe
Q 047247 199 PTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVN 278 (386)
Q Consensus 199 psLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN 278 (386)
..+=+.|+...++|+..==|+.. .=+|..+|+.+.=++. |-.|..|... -++....-....+.+|.|-
T Consensus 12 S~~Ae~la~~~~~~~~YiAT~~~-------~D~em~~RI~~H~~~R--~~~w~tiE~~---~~l~~~~~~~~~~~~vLlD 79 (167)
T PF02283_consen 12 SSFAERLALSFGGPVTYIATARP-------FDEEMRERIARHRQRR--PKGWITIEEP---RDLAEALEELSPGDVVLLD 79 (167)
T ss_dssp HHHHHHHHTS--SCEEEEESSHH-------HHHHHHHHHHHHHHHS--STCEEEEE-S---S-GGGTS-TTS-T-EEEEE
T ss_pred HHHHHHHHHhcCCCcEEEeCCCC-------CCHHHHHHHHHHHHhC--CCCcEEEecc---hhHHHHHHHhccCCeEEEe
Confidence 34556777554433222222221 2456788888888777 6666777542 2233222223447999999
Q ss_pred ecc-ccccccc----------chHHHHHHHHHhcCCcEEEEeeecCCCCCCccchHHHHHHHHHHH
Q 047247 279 CIG-ALRRVAV----------EERGAVIQMFQSLKPKVVTIVEEEADLTSSRYDFVKCFEECLRFY 333 (386)
Q Consensus 279 ~~~-~Lh~l~~----------~~r~~vL~~ir~L~P~vvvlvE~ea~~n~~~~~F~~RF~eaL~~Y 333 (386)
|.. -|-++.. .....++..+++.++++|+++++-+..-.|......+|++.+-.-
T Consensus 80 clt~wl~n~l~~~~~~~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~GiVP~~~~~R~yrd~lG~l 145 (167)
T PF02283_consen 80 CLTLWLANLLFAEEDDEEDILEEIERLLEALRERNADLVIVSNEVGWGIVPMDPLTRRYRDLLGRL 145 (167)
T ss_dssp -HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--SEEEEEEE---SS---SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 963 3444431 134567778888889998888766655556557888888877543
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=53.72 E-value=1.7e+02 Score=26.82 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=54.9
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc--eEEE
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP--FEFK 251 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip--FeF~ 251 (386)
.++++++-...-+|+|+|.|.|..=..|.+.+ . +.-++++|+. ....++.+.+++. ..|+. .+|.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~---~~~~~~~a~~~l~----~~~~~~~v~~~ 129 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEI---VKELAIYAAQNIE----RLGYWGVVEVY 129 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeC---CHHHHHHHHHHHH----HcCCCCcEEEE
Confidence 45566654444579999999987543343333 1 1237999985 2234444555543 34553 3333
Q ss_pred EeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEE
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTI 308 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvl 308 (386)
.- +..+.-+. ..+-+.+++++. ++++. +. ..+.|+|.-.++
T Consensus 130 ~~----d~~~~~~~---~~~fD~Ii~~~~--~~~~~----~~---l~~~L~~gG~lv 170 (205)
T PRK13944 130 HG----DGKRGLEK---HAPFDAIIVTAA--ASTIP----SA---LVRQLKDGGVLV 170 (205)
T ss_pred EC----CcccCCcc---CCCccEEEEccC--cchhh----HH---HHHhcCcCcEEE
Confidence 32 22221111 133467777765 34443 22 345678864443
No 74
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=53.39 E-value=2e+02 Score=28.39 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=56.7
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCcccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLVELT 263 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e~l~ 263 (386)
-+|+|+|.|.|. +--.||.+ + -+++||+. +...++.+.+ -|+..|++ .+|..- +++++.
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~--~---~~V~gvD~---s~~av~~A~~----n~~~~~l~~v~~~~~----D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP--G---MQLTGIEI---SAEAIACAKQ----SAAELGLTNVQFQAL----DSTQFA 234 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc--C---CEEEEEeC---CHHHHHHHHH----HHHHcCCCceEEEEc----CHHHHH
Confidence 579999999985 33445553 2 37999985 2334544433 34556664 556443 344332
Q ss_pred ccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEee
Q 047247 264 KGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVE 310 (386)
Q Consensus 264 ~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE 310 (386)
.. . ...-+.|++|=.. ..--+.+++.+.+++|+-++.+.
T Consensus 235 ~~-~-~~~~D~Vv~dPPr------~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 235 TA-Q-GEVPDLVLVNPPR------RGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred Hh-c-CCCCeEEEECCCC------CCccHHHHHHHHHcCCCeEEEEE
Confidence 21 1 1123677777331 11124677888999999888764
No 75
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=51.23 E-value=46 Score=31.64 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=43.2
Q ss_pred eeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCccccc
Q 047247 184 KLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLVEL 262 (386)
Q Consensus 184 ~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e~l 262 (386)
..|++|+|-|-|+ |.+.=+++. |.+++|-|++-...- .-|.+.++.+|++ .++..- +.|++
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk~-------~FL~~~~~eL~L~nv~i~~~----RaE~~ 129 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKKI-------AFLREVKKELGLENVEIVHG----RAEEF 129 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchHH-------HHHHHHHHHhCCCCeEEehh----hHhhc
Confidence 5799999988877 888877755 568899999632111 3456667778888 665543 46666
Q ss_pred cc
Q 047247 263 TK 264 (386)
Q Consensus 263 ~~ 264 (386)
..
T Consensus 130 ~~ 131 (215)
T COG0357 130 GQ 131 (215)
T ss_pred cc
Confidence 54
No 76
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=49.08 E-value=1.6e+02 Score=30.54 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=59.9
Q ss_pred HhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEee
Q 047247 176 LEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVIT 254 (386)
Q Consensus 176 LeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~ 254 (386)
++.+.-.+.-+|+|+|.|.|. +--.||.+. -+++||+. +...++.+.++ |+..|+. .+|..-
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~---s~~al~~A~~n----~~~~~~~~v~~~~~- 352 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEG---VEAMVERAREN----ARRNGLDNVTFYHA- 352 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeC---CHHHHHHHHHH----HHHcCCCceEEEEe-
Confidence 344443344589999999985 333466552 38999985 33345544433 3344553 444433
Q ss_pred cCCcccccccc-ccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEeee
Q 047247 255 GLNRLVELTKG-TLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVEE 311 (386)
Q Consensus 255 ~~~~~e~l~~~-~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE~ 311 (386)
++++.-.. .+.-..-+.|++|=... ..+.++..|.+++|+-++.+.-
T Consensus 353 ---d~~~~l~~~~~~~~~fD~Vi~dPPr~-------g~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 353 ---NLEEDFTDQPWALGGFDKVLLDPPRA-------GAAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred ---ChHHhhhhhhhhcCCCCEEEECcCCc-------ChHHHHHHHHhcCCCeEEEEEe
Confidence 23321110 01111125666665431 2346778899999998888743
No 77
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=48.93 E-value=34 Score=28.49 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=27.0
Q ss_pred CCCceEEEeecccccccccchHHHHHHHHHhcCCcEEE
Q 047247 270 KEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVT 307 (386)
Q Consensus 270 ~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvv 307 (386)
..+..-+....+..| +...++...|+.++|+-|+
T Consensus 70 ~~~~~~~~~VPYSeH----SSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 70 SRGNVRIYRVPYSEH----SSFSELKEFVSFLKPKKII 103 (110)
T ss_pred cCCCceEEEEecccC----CCHHHHHHHHHhcCCcEEE
Confidence 345566667777777 7789999999999999887
No 78
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=48.72 E-value=22 Score=34.83 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCceeEEeeccCCCCCChHHHHHHHhc
Q 047247 180 DGETKLHIIDMSNTLCTQWPTLLEALAT 207 (386)
Q Consensus 180 ~g~~~VHIIDf~i~~G~QWpsLiqaLA~ 207 (386)
.|.+.+||||||-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999876677 556777776
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=48.13 E-value=1.9e+02 Score=29.30 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVEL 262 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l 262 (386)
...+|+|+|.|.|.-.. .|+.+.++ .++|+|+.. ...++.+.++. ..-++. | +.. +++++
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S---~~mL~~A~~k~----~~~~i~--~--i~g--D~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQS---PHQLAKAKQKE----PLKECK--I--IEG--DAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECC---HHHHHHHHHhh----hccCCe--E--Eec--cHHhC
Confidence 45689999999987333 34443222 589999852 22344433321 112332 2 322 34443
Q ss_pred cccccccCCCceEEEeecccccccccchHHHHHHH-HHhcCCcEEEEe
Q 047247 263 TKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQM-FQSLKPKVVTIV 309 (386)
Q Consensus 263 ~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~-ir~L~P~vvvlv 309 (386)
... -..-+.++.+ ..||++. ++. .+|+. .+.|+|.-.+++
T Consensus 173 p~~---~~sFDvVIs~--~~L~~~~-d~~-~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 PFP---TDYADRYVSA--GSIEYWP-DPQ-RGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCC---CCceeEEEEc--ChhhhCC-CHH-HHHHHHHHhcCCCcEEEE
Confidence 321 1112345444 4467764 333 45554 567899866654
No 80
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=47.73 E-value=1.8e+02 Score=27.55 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
+.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~ 59 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEI 59 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEEC
Confidence 456666655555689999999986 566666663 2 3999985
No 81
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=47.63 E-value=3.1e+02 Score=27.91 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=55.9
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc-eEEEEeecCCccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP-FEFKVITGLNRLVELTK 264 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip-FeF~~v~~~~~~e~l~~ 264 (386)
.|+|++.|.| .+--.||.+ + -+++||+. +...++.+.++ |+..|+. .+|..- +++++..
T Consensus 236 ~vLDL~cG~G----~~~l~la~~--~---~~v~~vE~---~~~av~~a~~N----~~~~~~~~~~~~~~----d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP--D---TQLTGIEI---ESEAIACAQQS----AQMLGLDNLSFAAL----DSAKFAT 295 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc--C---CeEEEEEC---CHHHHHHHHHH----HHHcCCCcEEEEEC----CHHHHHH
Confidence 6899999988 233444443 2 37999985 23345444433 3445663 444332 3443321
Q ss_pred cccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEee
Q 047247 265 GTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVE 310 (386)
Q Consensus 265 ~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE 310 (386)
. + ...-+.|++|=... ..-..++..|..++|+-+|.++
T Consensus 296 ~-~-~~~~D~vi~DPPr~------G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 296 A-Q-MSAPELVLVNPPRR------GIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred h-c-CCCCCEEEECCCCC------CCcHHHHHHHHhcCCCeEEEEE
Confidence 1 1 11236788885521 2234688888899998888875
No 82
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=46.97 E-value=26 Score=34.19 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=19.1
Q ss_pred CCCceeEEeeccCCCCCChHHHHHHHhcCC
Q 047247 180 DGETKLHIIDMSNTLCTQWPTLLEALATRN 209 (386)
Q Consensus 180 ~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~ 209 (386)
.|++.|||||| +.+ ++ .+|+.+....
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 49999999999 444 65 5666666654
No 83
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=46.25 E-value=1.9e+02 Score=26.34 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=51.6
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCC-ceEEEEeecCCcccc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGV-PFEFKVITGLNRLVE 261 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgi-pFeF~~v~~~~~~e~ 261 (386)
+...|+|+|.|.|. +...++.. + .++++++.. ...++....++. ..++ .+.|... ++++
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s---~~~~~~a~~~~~----~~~~~~~~~~~~----d~~~ 104 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDAS---EENIEVAKLHAK----KDPLLKIEYRCT----SVED 104 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCC---HHHHHHHHHHHH----HcCCCceEEEeC----CHHH
Confidence 35689999999884 33344443 2 249999852 233444433332 3444 3444332 2333
Q ss_pred ccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEe
Q 047247 262 LTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 262 l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlv 309 (386)
+.... ...-+.|+. ...+|++. ++ ..+|+.+ +.|+|.-++++
T Consensus 105 ~~~~~--~~~~D~i~~--~~~l~~~~-~~-~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 105 LAEKG--AKSFDVVTC--MEVLEHVP-DP-QAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hhcCC--CCCccEEEe--hhHHHhCC-CH-HHHHHHHHHhcCCCcEEEE
Confidence 32211 112244443 34467664 33 3566655 66799866655
No 84
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=45.28 E-value=1.6e+02 Score=27.06 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=53.4
Q ss_pred CCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccc
Q 047247 181 GETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLV 260 (386)
Q Consensus 181 g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e 260 (386)
.....+|+|+|.|.|.- ...++.+ + .++|+|+.. ...++.+.+++ ...++..+|... +++
T Consensus 46 ~~~~~~vLdiG~G~G~~----~~~l~~~--~---~~v~~iD~s---~~~~~~a~~~~----~~~~~~~~~~~~----~~~ 105 (233)
T PRK05134 46 GLFGKRVLDVGCGGGIL----SESMARL--G---ADVTGIDAS---EENIEVARLHA----LESGLKIDYRQT----TAE 105 (233)
T ss_pred CCCCCeEEEeCCCCCHH----HHHHHHc--C---CeEEEEcCC---HHHHHHHHHHH----HHcCCceEEEec----CHH
Confidence 34556899999998763 3344443 2 479999852 23344433332 234555555433 233
Q ss_pred cccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEee
Q 047247 261 ELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 261 ~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE 310 (386)
++... .-..-+. |-|...++++. ++ ..+|+.+ +.|+|.-.+++.
T Consensus 106 ~~~~~--~~~~fD~--Ii~~~~l~~~~-~~-~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 106 ELAAE--HPGQFDV--VTCMEMLEHVP-DP-ASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred Hhhhh--cCCCccE--EEEhhHhhccC-CH-HHHHHHHHHHcCCCcEEEEE
Confidence 33211 0011233 33344566654 33 3455554 567898665554
No 85
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=45.06 E-value=1.5e+02 Score=29.26 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
.|++++.-...=.|+|+|.|.|.- -..|+.+. -+++||+.. .+.++.+.+++. ..+..=.+..+
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~L----T~~Ll~~~-----~~V~avEiD---~~li~~l~~~~~----~~~~~~~v~ii 90 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNL----TEKLLQLA-----KKVIAIEID---PRMVAELKKRFQ----NSPLASKLEVI 90 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHH----HHHHHHhC-----CcEEEEECC---HHHHHHHHHHHH----hcCCCCcEEEE
Confidence 444554433334699999998764 44455442 269999852 233433333332 22322234444
Q ss_pred ecCCccccccccccccCCCceEEEeeccccc
Q 047247 254 TGLNRLVELTKGTLGVKEDEAVAVNCIGALR 284 (386)
Q Consensus 254 ~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh 284 (386)
.. ++..++...+ ..|+.|..+..-
T Consensus 91 ~~--Dal~~~~~~~-----d~VvaNlPY~Is 114 (294)
T PTZ00338 91 EG--DALKTEFPYF-----DVCVANVPYQIS 114 (294)
T ss_pred EC--CHhhhccccc-----CEEEecCCcccC
Confidence 32 2332222211 477788776544
No 86
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=44.32 E-value=63 Score=26.05 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=21.0
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
+|+|+|.|.|.. ...|+.+. |..++|+|+.
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~ 51 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIER 51 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcC
Confidence 899999999753 33344442 2378999995
No 87
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=42.97 E-value=73 Score=29.39 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=39.6
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVE 261 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~ 261 (386)
.|+|+|-|-|+ |.+.=+++. |.+++|.|++... .. .-|...++.+|++ ..+.+.. ++|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~K---K~----~FL~~~~~~L~L~-nv~v~~~--R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGK---KV----AFLKEVVRELGLS-NVEVING--RAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHH---HH----HHHHHHHHHHT-S-SEEEEES---HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCch---HH----HHHHHHHHHhCCC-CEEEEEe--eecc
Confidence 59999988877 888888865 6799999996321 11 3466777888988 3444533 5666
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=41.72 E-value=2.3e+02 Score=29.47 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=61.1
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
+++.+.+.+.-.+||+|.|.| .++-.||.+. |...++||+. ....++.+.++ ++..|+. ....+.
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P~~~~iGIEI---~~~~i~~a~~k----a~~~gL~-NV~~i~ 178 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---PNKLFIGIEI---HTPSIEQVLKQ----IELLNLK-NLLIIN 178 (390)
T ss_pred HHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---CCCCEEEEEC---CHHHHHHHHHH----HHHcCCC-cEEEEE
Confidence 556666666778999999998 4556666664 5579999985 22344444333 4445664 133333
Q ss_pred cCCccccccccccccCCC--ceEEEeecccccccccc--hHHHHHHHH-HhcCCcEEEEe
Q 047247 255 GLNRLVELTKGTLGVKED--EAVAVNCIGALRRVAVE--ERGAVIQMF-QSLKPKVVTIV 309 (386)
Q Consensus 255 ~~~~~e~l~~~~L~~~~~--EaLaVN~~~~Lh~l~~~--~r~~vL~~i-r~L~P~vvvlv 309 (386)
. ++..+. .. +.++ +.|.+|+..--++-... -.+.+|+.+ |-|+|.-.+..
T Consensus 179 ~--DA~~ll-~~--~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 179 Y--DARLLL-EL--LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred C--CHHHhh-hh--CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 2 233221 11 1222 45556653211110000 014567665 66899876655
No 89
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=41.48 E-value=2.5e+02 Score=24.83 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=30.6
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
.|+|+|.|.|. +...++.+ ++ ++++|+. +...++.+.+++. ..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~---s~~~~~~a~~~~~----~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDI---NPFAVKELRENAK----LNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEEC---CHHHHHHHHHHHH----HcCCceEEE
Confidence 49999999983 55556655 33 8999985 2334554555443 345544443
No 90
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=40.98 E-value=74 Score=28.32 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=60.0
Q ss_pred HHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEE
Q 047247 171 SNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEF 250 (386)
Q Consensus 171 ANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF 250 (386)
+...+++.+...+.=+|+|+|.|.|. +=-.|+.+ -|..++++++. +...++-+.+ -++..++.- +
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~---~~~~~v~~vDi---~~~a~~~a~~----n~~~n~~~~-v 83 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR---GPDAKVTAVDI---NPDALELAKR----NAERNGLEN-V 83 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT---STCEEEEEEES---BHHHHHHHHH----HHHHTTCTT-E
T ss_pred HHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHh---CCCCEEEEEcC---CHHHHHHHHH----HHHhcCccc-c
Confidence 44566666665466679999999984 22244444 25688999985 2334433333 344556663 3
Q ss_pred EEeecCCccccccccccccCCCceEEEeeccccccccc---chHHHHHH-HHHhcCCcEEEEe
Q 047247 251 KVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAV---EERGAVIQ-MFQSLKPKVVTIV 309 (386)
Q Consensus 251 ~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~---~~r~~vL~-~ir~L~P~vvvlv 309 (386)
+.+.+ +-.+.+. -..=+.++.|=. +|.-.. ...+.+++ .-+-|+|.-..+.
T Consensus 84 ~~~~~-d~~~~~~-----~~~fD~Iv~NPP--~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 84 EVVQS-DLFEALP-----DGKFDLIVSNPP--FHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp EEEES-STTTTCC-----TTCEEEEEE-----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccc-ccccccc-----ccceeEEEEccc--hhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 44432 1123222 122257777766 332221 12344443 4466899976633
No 91
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=39.64 E-value=3.4e+02 Score=25.93 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=26.2
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
.|+++++-.+.=.|+|+|.|.|. |...|+.+. .++|||+.
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEi 59 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIEL 59 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEEC
Confidence 34444443344579999999986 455566552 37999985
No 92
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=37.74 E-value=1.3e+02 Score=28.28 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=49.3
Q ss_pred cCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEE-eccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 179 LDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTV-VVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 179 ~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~-I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
+.+.+.|=+||=.|+.|-=--.+|++|-.... -.+.-+.. +++.+ ++-..+..+.++.+|+|.+|..+.
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~------~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRS------EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCC------HHHHHHHHHHHHHcCCcEEEEEee
Confidence 34577999999999999999999999977632 12222222 24422 223457788899999999998875
No 93
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=37.29 E-value=64 Score=29.58 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHhhhhc
Q 047247 74 ASKLLKECA-RAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATE 128 (386)
Q Consensus 74 l~~LL~~cA-~Av~~~~~~~A~~lL~~L~~laSp~Gd~~qRlA~yF~~AL~~Rl~~ 128 (386)
+..+|+.|. ..+..++...|..++..|..+..|..+...|+...|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 556666665 6778889999999999999998888888899999999999765444
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=35.61 E-value=4.2e+02 Score=25.72 Aligned_cols=113 Identities=16% Similarity=0.087 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcC--CCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcC
Q 047247 168 HVASNGAILEALD--GETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMG 245 (386)
Q Consensus 168 ~~tANqaILeA~~--g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lg 245 (386)
+..+.+..+++++ ....-.|+|+|.|.|. |...++.. |+ -+++||+.. ...++.+.+++ +..+
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~--~~V~avDid---~~al~~a~~n~----~~n~ 206 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA--AKVVGIDID---PLAVESARKNA----ELNQ 206 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC--CeEEEEECC---HHHHHHHHHHH----HHcC
Confidence 4455566666554 2233579999999984 33445443 22 389999852 23454444433 3445
Q ss_pred CceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHH-HHhcCCcEEEEe
Q 047247 246 VPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQM-FQSLKPKVVTIV 309 (386)
Q Consensus 246 ipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~-ir~L~P~vvvlv 309 (386)
+...+..+.. ..... . -..=+.|+.|... .....++.. .+.|+|.-.++.
T Consensus 207 ~~~~~~~~~~--~~~~~----~-~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 207 VSDRLQVKLI--YLEQP----I-EGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred CCcceEEEec--ccccc----c-CCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEE
Confidence 5543333321 11110 0 0122566666531 233445544 477899866655
No 95
>PRK03646 dadX alanine racemase; Reviewed
Probab=35.56 E-value=50 Score=33.47 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=26.1
Q ss_pred ceeEE-eeccCC-CCCC---hHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 183 TKLHI-IDMSNT-LCTQ---WPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 183 ~~VHI-IDf~i~-~G~Q---WpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
-+||| ||-|++ .|+. |+.+++.+... |.|+|+||-+
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~~----~~l~~~Gi~s 157 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRAM----GNVGEMTLMS 157 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHhC----CCCEEEEEEc
Confidence 46898 999998 6875 55666665432 5699999965
No 96
>PLN02366 spermidine synthase
Probab=34.23 E-value=4.6e+02 Score=26.13 Aligned_cols=109 Identities=11% Similarity=0.150 Sum_probs=52.9
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG 265 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~ 265 (386)
+|+|+|.|.|. +...++.. |+.-+||.|+.. ...++-..+.+.+....+.=| .++.+.. +-.+-+.
T Consensus 94 rVLiIGgG~G~----~~rellk~---~~v~~V~~VEiD---~~Vi~~ar~~f~~~~~~~~dp-Rv~vi~~-Da~~~l~-- 159 (308)
T PLN02366 94 KVLVVGGGDGG----VLREIARH---SSVEQIDICEID---KMVIDVSKKFFPDLAVGFDDP-RVNLHIG-DGVEFLK-- 159 (308)
T ss_pred eEEEEcCCccH----HHHHHHhC---CCCCeEEEEECC---HHHHHHHHHhhhhhccccCCC-ceEEEEC-hHHHHHh--
Confidence 56888888875 55666654 346799999853 223443444443332111101 2233321 0011111
Q ss_pred ccccCCCceEEEeecccccccccc--hHHHHHHHH-HhcCCcEEEEee
Q 047247 266 TLGVKEDEAVAVNCIGALRRVAVE--ERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 266 ~L~~~~~EaLaVN~~~~Lh~l~~~--~r~~vL~~i-r~L~P~vvvlvE 310 (386)
...-..-++|++.+..... ... --..|++.+ +.|+|+-++++-
T Consensus 160 ~~~~~~yDvIi~D~~dp~~--~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVG--PAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred hccCCCCCEEEEcCCCCCC--chhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 0001224677776643211 111 124577776 568999887653
No 97
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=33.11 E-value=5.6e+02 Score=26.40 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceE
Q 047247 170 ASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFE 249 (386)
Q Consensus 170 tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFe 249 (386)
.+-+.+..++.-.+--.|+|+|.+.|.--..+.+.+ + .-+|+|++. +...++.+.++ ++++|+..+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~---~----~~~v~a~D~---~~~~l~~~~~n----~~r~g~~~~ 290 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELA---P----QAQVVALDI---HEHRLKRVYEN----LKRLGLTIK 290 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc---C----CCeEEEEeC---CHHHHHHHHHH----HHHcCCCeE
Confidence 345666666664444589999999998777666544 1 248999985 33455444444 456788744
Q ss_pred EEEe
Q 047247 250 FKVI 253 (386)
Q Consensus 250 F~~v 253 (386)
+..+
T Consensus 291 v~~~ 294 (426)
T TIGR00563 291 AETK 294 (426)
T ss_pred EEEe
Confidence 4333
No 98
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.84 E-value=1e+02 Score=28.88 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=33.7
Q ss_pred HhhcCCCceeEEeeccCCCC---CChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHH
Q 047247 176 LEALDGETKLHIIDMSNTLC---TQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFA 241 (386)
Q Consensus 176 LeA~~g~~~VHIIDf~i~~G---~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA 241 (386)
|-+++=.+.=|++|+|.|.| .+|. + -.|+.|+++|+. ..+.++-+.++..+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~---------~~p~~~v~AIe~---~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-L---------AGPSGRVIAIER---DEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-H---------hCCCceEEEEec---CHHHHHHHHHHHHHhC
Confidence 33444333349999999987 4664 2 136899999984 3445666666655443
No 99
>PRK09271 flavodoxin; Provisional
Probab=31.29 E-value=3.6e+02 Score=23.66 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhc--CC-cE
Q 047247 229 VMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSL--KP-KV 305 (386)
Q Consensus 229 ~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L--~P-~v 305 (386)
.-+.+.++|.+..+..|+..+...+. ..+++.....+.+-+.|+|=+...-....+.+...|++.++.+ ++ ++
T Consensus 13 nTe~~A~~ia~~l~~~g~~v~~~~~~----~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~ 88 (160)
T PRK09271 13 NTREVAREIEERCEEAGHEVDWVETD----VQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNV 88 (160)
T ss_pred hHHHHHHHHHHHHHhCCCeeEEEecc----cccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeE
Confidence 35667788888888888876544432 1122222223334456666553221122234467788877663 33 35
Q ss_pred EEEeeecCCCCCCccchHHHHHHHHHHHHHHHHH
Q 047247 306 VTIVEEEADLTSSRYDFVKCFEECLRFYTLYFEM 339 (386)
Q Consensus 306 vvlvE~ea~~n~~~~~F~~RF~eaL~~YsalFDs 339 (386)
.+++=.+...++ +.|..+...+...++.
T Consensus 89 avfgsgd~~~~~------~~f~~a~~~~~~~l~~ 116 (160)
T PRK09271 89 AVFGTGETQWGE------EYYCGAVHRMARFFGS 116 (160)
T ss_pred EEEecCCCCcCc------cHHHHHHHHHHHHHhc
Confidence 555422222221 5677777776666664
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=31.25 E-value=1.8e+02 Score=26.25 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCC
Q 047247 167 GHVASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGV 246 (386)
Q Consensus 167 a~~tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgi 246 (386)
..--....+++.+.-...=.|+|+|.|.|. +.. .++... |.-+||+|+. +...++.+.+++ +.+|+
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~---~la~~~---~~~~V~~vD~---s~~~~~~a~~n~----~~~~~ 89 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGT-IPV---EAGLLC---PKGRVIAIER---DEEVVNLIRRNC----DRFGV 89 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HHH---HHHHHC---CCCEEEEEeC---CHHHHHHHHHHH----HHhCC
Confidence 344455556666653344469999999986 222 223221 2258999995 223444444443 44565
Q ss_pred ceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEeee
Q 047247 247 PFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVEE 311 (386)
Q Consensus 247 pFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE~ 311 (386)
+ .++.+.. +.++. ...+... .+.+.+.. ..+.+.+|+.+ +.|+|.-.+++..
T Consensus 90 ~-~v~~~~~--d~~~~-~~~~~~~-~d~v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 90 K-NVEVIEG--SAPEC-LAQLAPA-PDRVCIEG--------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred C-CeEEEEC--chHHH-HhhCCCC-CCEEEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 2333322 22211 0111111 13333321 12345666665 5789997666653
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=31.13 E-value=2.1e+02 Score=20.95 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
.|+|+|.|.|. +...++. .+..++++++.
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~ 29 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDI 29 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeC
Confidence 47899999874 4455544 23579999985
No 102
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=29.85 E-value=1.6e+02 Score=32.46 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=56.2
Q ss_pred ccCCCC-CChHHHHHHHhcC---CCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEE-eecCCccccccc
Q 047247 190 MSNTLC-TQWPTLLEALATR---NDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKV-ITGLNRLVELTK 264 (386)
Q Consensus 190 f~i~~G-~QWpsLiqaLA~R---~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~-v~~~~~~e~l~~ 264 (386)
+|+..| -||-+|.++|..+ .++.|.+.|+....... .. |-+=|.++|+..|++-+|.. +. +|..
T Consensus 353 ~g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~eE---D~--T~~YL~d~a~qAG~~t~~~~~ie------dL~~ 421 (619)
T PRK10507 353 GYKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE---NY--HAQFMQQALHQAGFETKILRGLD------ELRW 421 (619)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCCCc---HH--HHHHHHHHHHHCCCceEEecCHH------HeEE
Confidence 345554 6888888888763 23347889998864321 11 55669999999999988873 53 3433
Q ss_pred c-ccccCCCceEEEeeccccccc
Q 047247 265 G-TLGVKEDEAVAVNCIGALRRV 286 (386)
Q Consensus 265 ~-~L~~~~~EaLaVN~~~~Lh~l 286 (386)
. .=++.+++-..|+++|.|+..
T Consensus 422 d~~G~~~D~dg~~I~~vfKlyPW 444 (619)
T PRK10507 422 DAAGQLIDGDGRLVNCVWKTWAW 444 (619)
T ss_pred CCCCcEECCCCCEeeeeeecccH
Confidence 2 112445566779999998853
No 103
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=29.85 E-value=1.4e+02 Score=25.25 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 200 TLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 200 sLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
.-++.|..+ +.+|+|=|--++....+..+ -+...+.|+++||.++...+.
T Consensus 18 ~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y----~~~k~k~~~~~Gi~~~~~~l~ 67 (117)
T PF00763_consen 18 EEIEKLKEK-GITPKLAIILVGDDPASISY----VRSKQKAAEKLGIEFELIELP 67 (117)
T ss_dssp HHHHHHHHC-T---EEEEEEES--HHHHHH----HHHHHHHHHHHT-EEEEEEE-
T ss_pred HHHHHHHhc-CCCcEEEEEecCCChhHHHH----HHHHHHHHHHcCCceEEEECC
Confidence 456777777 77899988888853222222 267889999999999988874
No 104
>PRK00811 spermidine synthase; Provisional
Probab=29.53 E-value=5e+02 Score=25.24 Aligned_cols=108 Identities=10% Similarity=0.088 Sum_probs=52.8
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHc-CCceEEEEeecCCccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLM-GVPFEFKVITGLNRLVELTK 264 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~l-gipFeF~~v~~~~~~e~l~~ 264 (386)
+|+|+|.|.|.= ...+..++ +.-+||+|+.. ...++...+.+.++.... . .=.++.+.. +....-.
T Consensus 79 ~VL~iG~G~G~~----~~~~l~~~---~~~~V~~VEid---~~vv~~a~~~~~~~~~~~~~-d~rv~v~~~--Da~~~l~ 145 (283)
T PRK00811 79 RVLIIGGGDGGT----LREVLKHP---SVEKITLVEID---ERVVEVCRKYLPEIAGGAYD-DPRVELVIG--DGIKFVA 145 (283)
T ss_pred EEEEEecCchHH----HHHHHcCC---CCCEEEEEeCC---HHHHHHHHHHhHHhcccccc-CCceEEEEC--chHHHHh
Confidence 678999888743 33344442 34589999852 234554445454443321 1 112233321 1111111
Q ss_pred cccccCCCceEEEeecccccccccc--hHHHHHHHH-HhcCCcEEEEee
Q 047247 265 GTLGVKEDEAVAVNCIGALRRVAVE--ERGAVIQMF-QSLKPKVVTIVE 310 (386)
Q Consensus 265 ~~L~~~~~EaLaVN~~~~Lh~l~~~--~r~~vL~~i-r~L~P~vvvlvE 310 (386)
. .-..=+++++++.-.. -... -...|++.+ +.|+|.-++++.
T Consensus 146 ~--~~~~yDvIi~D~~dp~--~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 146 E--TENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred h--CCCcccEEEECCCCCC--CchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1 0122367777663211 1111 125677655 668999888764
No 105
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.64 E-value=32 Score=35.34 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.7
Q ss_pred CCceeEEeeccCC
Q 047247 181 GETKLHIIDMSNT 193 (386)
Q Consensus 181 g~~~VHIIDf~i~ 193 (386)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 4558999999986
No 106
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=27.32 E-value=4.2e+02 Score=26.72 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=36.7
Q ss_pred eeccCCCCCChHHHHHHHh---cCCCCCCeeEEEEeccc--cchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 188 IDMSNTLCTQWPTLLEALA---TRNDETPHLKLTVVVTV--SLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 188 IDf~i~~G~QWpsLiqaLA---~R~~gpP~LRIT~I~~~--~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
+.++++...--.-++|.|- --.++|-+|+|+|+... +|+-+.++.+-. -.-+++|++++++.+.
T Consensus 82 ~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~l---P~l~~~G~~~~l~v~r 150 (326)
T cd00874 82 YEFDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTL---PLLERMGIEAELEVLR 150 (326)
T ss_pred EEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHH---HHHHhCCCcEEEEEEe
Confidence 3444444334444555542 12345669999999642 234455554443 3456799999988753
No 107
>PRK14968 putative methyltransferase; Provisional
Probab=27.12 E-value=1.4e+02 Score=26.12 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=22.2
Q ss_pred eeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 184 KLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 184 ~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
.-.|+|+|.|.|. +...|+.+ + .+|||++.
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~--~---~~v~~~D~ 53 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN--G---KKVVGVDI 53 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh--c---ceEEEEEC
Confidence 3469999999998 45555655 1 58999985
No 108
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=27.01 E-value=1.6e+02 Score=27.37 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=41.4
Q ss_pred ceeEE-eeccC---CCCCCh---HHHHHHHhcCCCCCCeeEEEEecccc---chHHHHHHHHHHHHHHHHHc----CCce
Q 047247 183 TKLHI-IDMSN---TLCTQW---PTLLEALATRNDETPHLKLTVVVTVS---LVRLVMKEIGQRMEKFARLM----GVPF 248 (386)
Q Consensus 183 ~~VHI-IDf~i---~~G~QW---psLiqaLA~R~~gpP~LRIT~I~~~~---~~~~~l~etg~rL~~fA~~l----gipF 248 (386)
-.||| ||-|. .+|+.+ +.+++.+.. -|.|+|.||-.-. ...+...+..+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46898 89884 478865 445555533 3569999995421 12234555566666666665 5777
Q ss_pred EEEEee
Q 047247 249 EFKVIT 254 (386)
Q Consensus 249 eF~~v~ 254 (386)
++--+-
T Consensus 193 ~~is~G 198 (222)
T cd00635 193 KELSMG 198 (222)
T ss_pred CEEECc
Confidence 766553
No 109
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=26.95 E-value=1.7e+02 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHH
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEK 239 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~ 239 (386)
+++.+.-...-.|+|+|.|.|.... ++..+. + ++++|+.. ...++.+.+++.+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~---~~~~~~a~~~~~~ 122 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERI---KTLQWEAKRRLKQ 122 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCC---HHHHHHHHHHHHH
Confidence 3455554555679999999987433 333332 1 69999852 2344444444443
No 110
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.81 E-value=92 Score=29.68 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=24.4
Q ss_pred hcCCCceeEEeeccCCC-C-CChHHHHHHHhcCC
Q 047247 178 ALDGETKLHIIDMSNTL-C-TQWPTLLEALATRN 209 (386)
Q Consensus 178 A~~g~~~VHIIDf~i~~-G-~QWpsLiqaLA~R~ 209 (386)
...|.+.+||+|++-.. | ..=..+|+.++...
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~ 75 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT 75 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhc
Confidence 44589999999998773 3 35577899998754
No 111
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=26.61 E-value=5.7e+02 Score=26.49 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=48.0
Q ss_pred HHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 172 NGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 172 NqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
.+.+.+++.-.+.-+|+|+|.+.|.-=..+.+.+ .+.-+||+|+. ....++.+.+ -++..|+.- ..
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~------~~~~~v~avDi---~~~~l~~~~~----n~~~~g~~~-v~ 304 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELL------KNTGKVVALDI---HEHKLKLIEE----NAKRLGLTN-IE 304 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHh------CCCCEEEEEeC---CHHHHHHHHH----HHHHcCCCe-EE
Confidence 3455555554444579999999986433333322 12248999985 2334544444 345667752 33
Q ss_pred EeecCCccccccccccccCCCceEEEeecc
Q 047247 252 VITGLNRLVELTKGTLGVKEDEAVAVNCIG 281 (386)
Q Consensus 252 ~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~ 281 (386)
.+.. ++.++.. .+. ..-+.|++|..+
T Consensus 305 ~~~~--D~~~~~~-~~~-~~fD~Vl~D~Pc 330 (444)
T PRK14902 305 TKAL--DARKVHE-KFA-EKFDKILVDAPC 330 (444)
T ss_pred EEeC--Ccccccc-hhc-ccCCEEEEcCCC
Confidence 3322 2333211 111 234688888653
No 112
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=26.18 E-value=1.6e+02 Score=26.76 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=40.4
Q ss_pred CCceeEE-eeccCC-CCCChH---HHHHHHhcCCCCCCeeEEEEeccccc----hHHHHH---HHHHHHHHHHHHcCCce
Q 047247 181 GETKLHI-IDMSNT-LCTQWP---TLLEALATRNDETPHLKLTVVVTVSL----VRLVMK---EIGQRMEKFARLMGVPF 248 (386)
Q Consensus 181 g~~~VHI-IDf~i~-~G~QWp---sLiqaLA~R~~gpP~LRIT~I~~~~~----~~~~l~---etg~rL~~fA~~lgipF 248 (386)
..-.||| ||-|.. .|+.+. .|++.+... |.|+|.||-.-.+ .....+ +.-..+.+..+..|++.
T Consensus 109 ~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~----~~l~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~~~~ 184 (218)
T PF01168_consen 109 KPLKVHLKVDTGMGRLGVRPEELEELAEAIKAL----PNLRLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKAGIPP 184 (218)
T ss_dssp STEEEEEEBESSSSSSSBECHHHHHHHHHHHHT----TTEEEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CceEEEEeecccccccCCCHHHHHHHHHHHhcC----CCceEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4557888 888887 577654 556666554 5699999954211 111111 22234444445556776
Q ss_pred EEEEee
Q 047247 249 EFKVIT 254 (386)
Q Consensus 249 eF~~v~ 254 (386)
.+..+.
T Consensus 185 ~~~s~g 190 (218)
T PF01168_consen 185 PIVSMG 190 (218)
T ss_dssp SEEEEE
T ss_pred ceecCC
Confidence 666664
No 113
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=25.82 E-value=7.6e+02 Score=25.62 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=32.5
Q ss_pred hhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc
Q 047247 177 EALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP 247 (386)
Q Consensus 177 eA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip 247 (386)
..+.-...=+|+|+|.|.|.- ...+..+.. .+ -+|||++. +...++. +.+-++.+|+.
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~k-t~~la~~~~-~~----~~V~avD~---s~~~l~~----~~~~~~~~g~~ 301 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGK-STFMAELMQ-NR----GQITAVDR---YPQKLEK----IRSHASALGIT 301 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHH-HHHHHHHhC-CC----cEEEEEEC---CHHHHHH----HHHHHHHhCCC
Confidence 344433334799999999862 223333322 12 38999995 3334543 34445567875
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=25.25 E-value=1.4e+02 Score=30.00 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHH
Q 047247 170 ASNGAILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRM 237 (386)
Q Consensus 170 tANqaILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL 237 (386)
...+.+|+.+.....-+|+|||.|+|. |==.|+.+. |..+||-++- +...++-....|
T Consensus 145 ~GS~lLl~~l~~~~~~~vlDlGCG~Gv----lg~~la~~~---p~~~vtmvDv---n~~Av~~ar~Nl 202 (300)
T COG2813 145 KGSRLLLETLPPDLGGKVLDLGCGYGV----LGLVLAKKS---PQAKLTLVDV---NARAVESARKNL 202 (300)
T ss_pred hHHHHHHHhCCccCCCcEEEeCCCccH----HHHHHHHhC---CCCeEEEEec---CHHHHHHHHHhH
Confidence 456888999987766699999999985 333444443 5789999984 334454444433
No 115
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.14 E-value=6.1e+02 Score=24.29 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=63.6
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCcccccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG 265 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~ 265 (386)
+|+|+|.|.|. +...+..++ +.-++|+|+.. ...++...+.+.+....+.-+ .++.+.. +-.+-+...
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~~~~v~~veid---~~vi~~a~~~~~~~~~~~~~~-~v~i~~~-D~~~~l~~~ 142 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---SVEKATLVDID---EKVIELSKKFLPSLAGSYDDP-RVDLQID-DGFKFLADT 142 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---CcceEEEEeCC---HHHHHHHHHHhHhhcccccCC-ceEEEEC-chHHHHHhC
Confidence 88999999876 344444443 34579999852 234444444444433222211 1222211 011111100
Q ss_pred ccccCCCceEEEeecccccccccchHHHHHHHH-HhcCCcEEEEeeecCCCCCCccch-HHHHHHHHHHHHHHHHHh
Q 047247 266 TLGVKEDEAVAVNCIGALRRVAVEERGAVIQMF-QSLKPKVVTIVEEEADLTSSRYDF-VKCFEECLRFYTLYFEML 340 (386)
Q Consensus 266 ~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~i-r~L~P~vvvlvE~ea~~n~~~~~F-~~RF~eaL~~YsalFDsL 340 (386)
-..=++|+++.....+.-..--...+++.+ +.|+|.-++++.. .++ .+ ...|....+....+|...
T Consensus 143 ---~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~----~~~--~~~~~~~~~~~~tl~~~F~~v 210 (270)
T TIGR00417 143 ---ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS----ESP--WIQLELITDLKRDVKEAFPIT 210 (270)
T ss_pred ---CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC----CCc--ccCHHHHHHHHHHHHHHCCCe
Confidence 123367777765322210000135677665 5589998888752 223 22 334444444455555544
No 116
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=25.02 E-value=3.7e+02 Score=24.92 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=41.3
Q ss_pred CChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 047247 196 TQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVIT 254 (386)
Q Consensus 196 ~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~ 254 (386)
..||-++..+..+.+.-+.-.|+-++. ..+.|+.++.-..++++..|.++++..-.
T Consensus 10 ~~~~~~l~~~l~~~~~l~~~ei~L~Di---d~~RL~~~~~~~~~~~~~~~~~~~v~~tt 65 (183)
T PF02056_consen 10 TYFPLLLLGDLLRTEELSGSEIVLMDI---DEERLEIVERLARRMVEEAGADLKVEATT 65 (183)
T ss_dssp CCHHHHHHHHHHCTTTSTEEEEEEE-S---CHHHHHHHHHHHHHHHHHCTTSSEEEEES
T ss_pred HhhHHHHHHHHhcCccCCCcEEEEEcC---CHHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 789988887777765555444444443 34688889988999999999999987764
No 117
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=24.73 E-value=1.4e+02 Score=28.88 Aligned_cols=53 Identities=23% Similarity=0.222 Sum_probs=31.2
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc--eEEE
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP--FEFK 251 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip--FeF~ 251 (386)
.+|+|+|.|.|. +.-.|+... |..++||++. +...++-+.++ ++..|+. ++|.
T Consensus 116 ~~vLDlG~GsG~----i~l~la~~~---~~~~v~avDi---s~~al~~a~~n----~~~~~~~~~v~~~ 170 (284)
T TIGR00536 116 LHILDLGTGSGC----IALALAYEF---PNAEVIAVDI---SPDALAVAEEN----AEKNQLEHRVEFI 170 (284)
T ss_pred CEEEEEeccHhH----HHHHHHHHC---CCCEEEEEEC---CHHHHHHHHHH----HHHcCCCCcEEEE
Confidence 589999999984 333444432 3468999985 22344444333 4455664 4443
No 118
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=24.22 E-value=2e+02 Score=25.72 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=48.6
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVELTK 264 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~ 264 (386)
-.|+|+|.|.|. +.-.++.+. |..++|+|+.. ...++.+.+ .++..+++ .+..+.. +...
T Consensus 33 ~~vLDiG~G~G~----~~~~la~~~---~~~~v~~vD~s---~~~~~~a~~----n~~~~~~~-~i~~~~~--d~~~--- 92 (187)
T PRK08287 33 KHLIDVGAGTGS----VSIEAALQF---PSLQVTAIERN---PDALRLIKE----NRQRFGCG-NIDIIPG--EAPI--- 92 (187)
T ss_pred CEEEEECCcCCH----HHHHHHHHC---CCCEEEEEECC---HHHHHHHHH----HHHHhCCC-CeEEEec--Cchh---
Confidence 369999999983 333334432 35799999952 223433333 33444553 2232321 1211
Q ss_pred cccccCCCceEEEeecccccccccchHHHHHHH-HHhcCCcEEEEee
Q 047247 265 GTLGVKEDEAVAVNCIGALRRVAVEERGAVIQM-FQSLKPKVVTIVE 310 (386)
Q Consensus 265 ~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~-ir~L~P~vvvlvE 310 (386)
.+. ..-++++++.. .++ .+.+++. .+.|+|.-.++.+
T Consensus 93 -~~~-~~~D~v~~~~~--~~~-----~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 93 -ELP-GKADAIFIGGS--GGN-----LTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred -hcC-cCCCEEEECCC--ccC-----HHHHHHHHHHhcCCCeEEEEE
Confidence 111 11245555432 121 2345554 5778999777663
No 119
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=24.12 E-value=1.9e+02 Score=27.24 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=29.0
Q ss_pred CCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHH
Q 047247 180 DGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRM 237 (386)
Q Consensus 180 ~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL 237 (386)
...+..+|+|+|.|.|. +...|+... |..++||++. +...++.+.+++
T Consensus 105 ~~~~~~~vLDiG~GsG~----~~~~la~~~---~~~~v~~iDi---s~~~l~~a~~n~ 152 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGA----IALALAKER---PDAEVTAVDI---SPEALAVARRNA 152 (275)
T ss_pred cccCCCEEEEEcCcHHH----HHHHHHHHC---CCCEEEEEEC---CHHHHHHHHHHH
Confidence 34456789999999984 333343332 4578999985 223444444443
No 120
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=23.71 E-value=2e+02 Score=30.46 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=48.9
Q ss_pred HHHHhhcCCCceeEEeeccCCCCCC--hHHHHHHHhcCCC-C-CCeeEE----EEeccccchHHHHHHHHHHHHHHHHHc
Q 047247 173 GAILEALDGETKLHIIDMSNTLCTQ--WPTLLEALATRND-E-TPHLKL----TVVVTVSLVRLVMKEIGQRMEKFARLM 244 (386)
Q Consensus 173 qaILeA~~g~~~VHIIDf~i~~G~Q--WpsLiqaLA~R~~-g-pP~LRI----T~I~~~~~~~~~l~etg~rL~~fA~~l 244 (386)
..|-+......+-+||=|+.|--.. =--..++|...|. + .+.+.| |++..|. ....++.+-+++.++|++.
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe-~~~~v~~~l~~i~~~a~~~ 81 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPI-VAAWVNASLERMQEAAQDQ 81 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHH-HHHHHHHHHHHHHHHHHHc
Confidence 3455555555666788888773111 0111234443221 2 245666 5555443 3456778888999999999
Q ss_pred CCceEEEEee
Q 047247 245 GVPFEFKVIT 254 (386)
Q Consensus 245 gipFeF~~v~ 254 (386)
|+|+..+.+.
T Consensus 82 ~lpi~~~~v~ 91 (447)
T TIGR03183 82 GLPIEPHRLT 91 (447)
T ss_pred CCCeEEEecC
Confidence 9999998874
No 121
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=23.35 E-value=4.2e+02 Score=25.21 Aligned_cols=122 Identities=19% Similarity=0.217 Sum_probs=65.9
Q ss_pred EEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCc--eEEEEeecCCcccccc
Q 047247 186 HIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVP--FEFKVITGLNRLVELT 263 (386)
Q Consensus 186 HIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgip--FeF~~v~~~~~~e~l~ 263 (386)
.|+|+|.|.| .|+..|++.. =+ =++|||+-. ...+ +. -...|++-|++ .+|....-.. . +..
T Consensus 70 ~VlDLGtGNG----~~L~~L~~eg--f~-~~L~GvDYs---~~AV-~L---A~niAe~~~~~n~I~f~q~DI~~-~-~~~ 133 (227)
T KOG1271|consen 70 RVLDLGTGNG----HLLFQLAKEG--FQ-SKLTGVDYS---EKAV-EL---AQNIAERDGFSNEIRFQQLDITD-P-DFL 133 (227)
T ss_pred ceeeccCCch----HHHHHHHHhc--CC-CCccccccC---HHHH-HH---HHHHHHhcCCCcceeEEEeeccC-C-ccc
Confidence 8899999997 4777787653 11 128999842 1122 11 23456777777 6666642110 1 222
Q ss_pred cc--ccccCCCceEEEeecccccccccchHHHHHHHHHh-cCCcEEEEeeecCCCCCCccchHHHHHHH
Q 047247 264 KG--TLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQS-LKPKVVTIVEEEADLTSSRYDFVKCFEEC 329 (386)
Q Consensus 264 ~~--~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~-L~P~vvvlvE~ea~~n~~~~~F~~RF~ea 329 (386)
+. ++-+++|-.=||.+..-.. ...+..-+..|++ |+|.-+.+ --.||+.-- -++++|.+-
T Consensus 134 ~~qfdlvlDKGT~DAisLs~d~~---~~r~~~Y~d~v~~ll~~~gifv-ItSCN~T~d--ELv~~f~~~ 196 (227)
T KOG1271|consen 134 SGQFDLVLDKGTLDAISLSPDGP---VGRLVVYLDSVEKLLSPGGIFV-ITSCNFTKD--ELVEEFENF 196 (227)
T ss_pred ccceeEEeecCceeeeecCCCCc---ccceeeehhhHhhccCCCcEEE-EEecCccHH--HHHHHHhcC
Confidence 22 2345666555555432111 1222455666654 46764333 245777665 677787754
No 122
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=23.30 E-value=2.1e+02 Score=29.23 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=39.8
Q ss_pred ceeEE-eeccCC-CCCChH----HHHHHHhcCCCCCCeeEEEEecc--cc-----------chHHHHHHHHHHHHHHHHH
Q 047247 183 TKLHI-IDMSNT-LCTQWP----TLLEALATRNDETPHLKLTVVVT--VS-----------LVRLVMKEIGQRMEKFARL 243 (386)
Q Consensus 183 ~~VHI-IDf~i~-~G~QWp----sLiqaLA~R~~gpP~LRIT~I~~--~~-----------~~~~~l~etg~rL~~fA~~ 243 (386)
=.||| ||=|++ .|+..+ .|++.+... |.|++.||-. .. .....+.+..+.+.+.++.
T Consensus 134 l~V~lkVDtGm~R~Gv~~~~~~~~l~~~i~~~----~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (379)
T cd06814 134 LRINLELDVGLHRGGFADPQTLPKALTAIDAP----PRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARA 209 (379)
T ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhC----CCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 36887 777776 477544 556655443 5699999943 10 0112333444677777776
Q ss_pred c---CCceEEEEe
Q 047247 244 M---GVPFEFKVI 253 (386)
Q Consensus 244 l---gipFeF~~v 253 (386)
+ |++.++-.+
T Consensus 210 ~~~~g~~~~~vs~ 222 (379)
T cd06814 210 HLGAHTQKLTLNT 222 (379)
T ss_pred hhccCCCccEEec
Confidence 6 787665554
No 123
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=23.12 E-value=1.9e+02 Score=27.22 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=32.6
Q ss_pred ceeEE-eecc--CC-CCCChHHHHHHHhcCCCCCCeeEEEEecccc---chHHHHHHHHHHHHHHHHHc
Q 047247 183 TKLHI-IDMS--NT-LCTQWPTLLEALATRNDETPHLKLTVVVTVS---LVRLVMKEIGQRMEKFARLM 244 (386)
Q Consensus 183 ~~VHI-IDf~--i~-~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~---~~~~~l~etg~rL~~fA~~l 244 (386)
-.||| ||.| ++ .|+.+..+. .++.+-..-|.|++.|+-.-. ......++.-+.+.++.+.+
T Consensus 121 ~~V~l~vdtg~gm~R~G~~~~e~~-~~~~~i~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l 188 (229)
T TIGR00044 121 LNVLLQINISDEESKSGIQPEELL-ELAIQIEELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQI 188 (229)
T ss_pred ceEEEEEECCCCCCCCCCCHHHHH-HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36788 8885 44 688653332 233333334789999995421 12223334445555555443
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=21.91 E-value=7.5e+02 Score=25.50 Aligned_cols=89 Identities=7% Similarity=0.004 Sum_probs=45.5
Q ss_pred HHHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 174 AILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 174 aILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
.+..++.-.+.=+|+|+|.|.|..=..+.+ +-+ .-+|+|++. +...++.+. +-++.+|+..+|..-
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~----~~~---~~~v~a~D~---s~~~l~~~~----~n~~~~g~~~~~~~~ 300 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILE----LAP---QAQVVALDI---DAQRLERVR----ENLQRLGLKATVIVG 300 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHH----HcC---CCEEEEEeC---CHHHHHHHH----HHHHHcCCCeEEEEc
Confidence 444455433334799999999873332222 221 158999985 233454443 344667776543322
Q ss_pred ecCCccccccccccccCCCceEEEeecc
Q 047247 254 TGLNRLVELTKGTLGVKEDEAVAVNCIG 281 (386)
Q Consensus 254 ~~~~~~e~l~~~~L~~~~~EaLaVN~~~ 281 (386)
+..++... +.-..=+.|++|..+
T Consensus 301 ----D~~~~~~~-~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 301 ----DARDPAQW-WDGQPFDRILLDAPC 323 (427)
T ss_pred ----Ccccchhh-cccCCCCEEEECCCC
Confidence 23222110 111223678887764
No 125
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=21.84 E-value=2.2e+02 Score=27.64 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=41.5
Q ss_pred CChHHHHHHHhcCCCCCCeeEEEEecc---------cc--ch--HHHHHHHHHHHHHHHHHcCCceEEEEeecCCccccc
Q 047247 196 TQWPTLLEALATRNDETPHLKLTVVVT---------VS--LV--RLVMKEIGQRMEKFARLMGVPFEFKVITGLNRLVEL 262 (386)
Q Consensus 196 ~QWpsLiqaLA~R~~gpP~LRIT~I~~---------~~--~~--~~~l~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l 262 (386)
.-|..|++.|.......| |.||-. .. .. ...-..+.+||.+.-+.+|+.|-...|.+ +.+.+
T Consensus 8 ~~W~~~L~lL~~~R~r~P---lnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~T--k~D~l 82 (266)
T PF14331_consen 8 AEWQAFLDLLRRHRPRQP---LNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFT--KCDLL 82 (266)
T ss_pred HHHHHHHHHHHhcCCCCC---CCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeE--CCCcc
Confidence 359999999987553333 333321 11 01 33456778999999999999999888865 45554
No 126
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.83 E-value=1.3e+02 Score=24.52 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEe
Q 047247 235 QRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIV 309 (386)
Q Consensus 235 ~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlv 309 (386)
..|..+.+..|...++--... +.+++.......++ +.|++++.+.-+. .....+.+.+|+.+|++.|++
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~--~~~~l~~~~~~~~p-d~V~iS~~~~~~~---~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANV--PPEELVEALRAERP-DVVGISVSMTPNL---PEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB---HHHHHHHHHHTTC-SEEEEEESSSTHH---HHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHCCCeEEEECCCC--CHHHHHHHHhcCCC-cEEEEEccCcCcH---HHHHHHHHHHHhcCCCCEEEE
Confidence 456677777788766554321 22333222112233 6788888532221 234568888999999988877
No 127
>PTZ00146 fibrillarin; Provisional
Probab=21.69 E-value=8.1e+02 Score=24.44 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=65.0
Q ss_pred eEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEeccccchHHHHHHHHHHHHHHHHH-cCCceEEEEeecCCcccccc
Q 047247 185 LHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVTVSLVRLVMKEIGQRMEKFARL-MGVPFEFKVITGLNRLVELT 263 (386)
Q Consensus 185 VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~~l~etg~rL~~fA~~-lgipFeF~~v~~~~~~e~l~ 263 (386)
-.|+|+|.+.|. |...+-.+.... =+|.+|+.. .++.+.|.+.|+. -||. ++.. +.. .
T Consensus 134 ~~VLDLGaG~G~-~t~~lAdiVG~~-----G~VyAVD~s-------~r~~~dLl~~ak~r~NI~----~I~~--Da~--~ 192 (293)
T PTZ00146 134 SKVLYLGAASGT-TVSHVSDLVGPE-----GVVYAVEFS-------HRSGRDLTNMAKKRPNIV----PIIE--DAR--Y 192 (293)
T ss_pred CEEEEeCCcCCH-HHHHHHHHhCCC-----CEEEEEECc-------HHHHHHHHHHhhhcCCCE----EEEC--Ccc--C
Confidence 368999999998 777776665322 279999841 3344455555543 3442 2321 121 1
Q ss_pred ccccc--cCCCceEEEeecccccccccchHHHHH-HHHHhcCCcEEEEeeecCC--CCCCccchHHHHHHHHHHHHHH-H
Q 047247 264 KGTLG--VKEDEAVAVNCIGALRRVAVEERGAVI-QMFQSLKPKVVTIVEEEAD--LTSSRYDFVKCFEECLRFYTLY-F 337 (386)
Q Consensus 264 ~~~L~--~~~~EaLaVN~~~~Lh~l~~~~r~~vL-~~ir~L~P~vvvlvE~ea~--~n~~~~~F~~RF~eaL~~Ysal-F 337 (386)
+..+. +..=++|..... + .++...++ ..-+-|+|.-.++++-.+. ...+ +--++|.+-+...... |
T Consensus 193 p~~y~~~~~~vDvV~~Dva-~-----pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~--~pe~~f~~ev~~L~~~GF 264 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA-Q-----PDQARIVALNAQYFLKNGGHFIISIKANCIDSTA--KPEVVFASEVQKLKKEGL 264 (293)
T ss_pred hhhhhcccCCCCEEEEeCC-C-----cchHHHHHHHHHHhccCCCEEEEEEeccccccCC--CHHHHHHHHHHHHHHcCC
Confidence 11111 111133333221 1 23333444 5556799997666644433 3344 5667776655444333 4
Q ss_pred HHhh
Q 047247 338 EMLE 341 (386)
Q Consensus 338 DsLd 341 (386)
+.++
T Consensus 265 ~~~e 268 (293)
T PTZ00146 265 KPKE 268 (293)
T ss_pred ceEE
Confidence 4333
No 128
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=21.63 E-value=1.7e+02 Score=29.05 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=57.0
Q ss_pred cCchHHHHHHHHHHHHHhhcCCCceeEEeeccCCC----CC-ChHHHHHHHhcCCCCCCeeEE-----------------
Q 047247 160 VSPWTTFGHVASNGAILEALDGETKLHIIDMSNTL----CT-QWPTLLEALATRNDETPHLKL----------------- 217 (386)
Q Consensus 160 ~~P~~kfa~~tANqaILeA~~g~~~VHIIDf~i~~----G~-QWpsLiqaLA~R~~gpP~LRI----------------- 217 (386)
..|-+.+-.+-.-.+|++|.+..+.-=||.+.-+. |. .+..++..+|++..-|-.|.+
T Consensus 17 AV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 96 (282)
T TIGR01858 17 AVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGV 96 (282)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 45666666667777888888877777777765541 32 366777788877755544442
Q ss_pred EEecc---ccchHHHHHHHHHHHHHHHHHcCCceEEE
Q 047247 218 TVVVT---VSLVRLVMKEIGQRMEKFARLMGVPFEFK 251 (386)
Q Consensus 218 T~I~~---~~~~~~~l~etg~rL~~fA~~lgipFeF~ 251 (386)
|.|=- ..|..+.++ .-+++.++|+.+|++.|=.
T Consensus 97 tSVM~DgS~lp~eeNi~-~T~~vv~~Ah~~gv~VEaE 132 (282)
T TIGR01858 97 RSAMIDGSHFPFAQNVK-LVKEVVDFCHRQDCSVEAE 132 (282)
T ss_pred CEEeecCCCCCHHHHHH-HHHHHHHHHHHcCCeEEEE
Confidence 33311 112333443 4468999999999887744
No 129
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=21.63 E-value=1.1e+02 Score=30.97 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=35.2
Q ss_pred ceeEE-eeccCC-CCCC---hHHHHHHHhcCCCCCCeeEEEEeccccchHH--HHHHHHHHHHHHHHHcC
Q 047247 183 TKLHI-IDMSNT-LCTQ---WPTLLEALATRNDETPHLKLTVVVTVSLVRL--VMKEIGQRMEKFARLMG 245 (386)
Q Consensus 183 ~~VHI-IDf~i~-~G~Q---WpsLiqaLA~R~~gpP~LRIT~I~~~~~~~~--~l~etg~rL~~fA~~lg 245 (386)
-+||| ||-|++ .|+. |..+++.+... |.|+|.||.+.-...+ .-..+...+.+|.+.+.
T Consensus 115 ~~v~l~vDtGm~R~Gi~~~e~~~~~~~i~~~----~~l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~ 180 (354)
T cd06827 115 LNVWLKLDSGMHRLGFSPEEYAAAYQRLKAS----PNVASIVLMTHFACADEPDSPGTAKQLAIFEQATA 180 (354)
T ss_pred eEEEEEeeCCcCCCCCCHHHHHHHHHHHHhC----CCceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHh
Confidence 47898 998876 6875 55666655432 4699999965211010 11234566666766554
No 130
>PRK04148 hypothetical protein; Provisional
Probab=21.08 E-value=2.6e+02 Score=24.60 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHhhcCCCceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 175 ILEALDGETKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 175 ILeA~~g~~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
|.+.....+...|+|.|+|+|+. +-+.|++. | ..+|||+.
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~---vA~~L~~~--G---~~ViaIDi 47 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFK---VAKKLKES--G---FDVIVIDI 47 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHH---HHHHHHHC--C---CEEEEEEC
Confidence 44555544556799999998743 44455543 2 58999985
No 131
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=1.9e+02 Score=28.47 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCCeeEEEEeccccc-hHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 047247 211 ETPHLKLTVVVTVSL-VRLVMKEIGQRMEKFARLMGVPFEFKVI 253 (386)
Q Consensus 211 gpP~LRIT~I~~~~~-~~~~l~etg~rL~~fA~~lgipFeF~~v 253 (386)
|+|.-||+..++.-. -...|+++.+.+.+-++.+|....|+--
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r~ 262 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIRE 262 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 788888888875311 2357999999999999999999999864
No 132
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=20.68 E-value=2.3e+02 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=22.1
Q ss_pred eeEE-eeccCC-CCCC----hHHHHHHHhcCCCCCCeeEEEEe
Q 047247 184 KLHI-IDMSNT-LCTQ----WPTLLEALATRNDETPHLKLTVV 220 (386)
Q Consensus 184 ~VHI-IDf~i~-~G~Q----WpsLiqaLA~R~~gpP~LRIT~I 220 (386)
+||| ||-|+. .|+. +..+++.+... |.|++.||
T Consensus 127 ~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~----~~l~l~Gi 165 (358)
T cd06819 127 DVLVEIDVGQGRCGVPPGEAALALARTIAAL----PGLRFAGL 165 (358)
T ss_pred EEEEEECCCCCcCCCCChHHHHHHHHHHHhC----CCceEeEE
Confidence 6777 787766 5765 45555555443 46999999
No 133
>COG1961 PinR Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]
Probab=20.50 E-value=5.5e+02 Score=23.65 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeecCCcccccccc---cc-ccCCC-ceEEEeecccccccccchHHHHHHHHHhcCCcE
Q 047247 231 KEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKG---TL-GVKED-EAVAVNCIGALRRVAVEERGAVIQMFQSLKPKV 305 (386)
Q Consensus 231 ~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~---~L-~~~~~-EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~v 305 (386)
+..-..|.+||...|.+..|.-..+...-....|. +| .++.| ++|+|-..-+|.+- ....-.++..+...++.+
T Consensus 18 ~~Q~~~l~~~~~~~g~~~~~~~~~sg~~~~~~Rp~l~~ll~~i~~g~d~lvV~~lDRL~R~-~~~~~~~~~~l~~~gv~~ 96 (222)
T COG1961 18 DNQREALEAYAKNKGCEIVFEDKDSGSSSGKNRPGLQRLLEDIEEGKDTLVVYKLDRLGRS-LSDLLQLLELLAEKGITL 96 (222)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeecCCccCCCCCHHHHHHHHHHHcCCcEEEEEEechhhcC-HHHHHHHHHHHHHCCCEE
Confidence 44567899999999999544444321111111332 12 25678 99999998888871 122335677788888888
Q ss_pred EEEeeecCCCCCC
Q 047247 306 VTIVEEEADLTSS 318 (386)
Q Consensus 306 vvlvE~ea~~n~~ 318 (386)
+++.|+-.|.+++
T Consensus 97 ~~~~~~~~d~~s~ 109 (222)
T COG1961 97 ISLAENIFDTSSP 109 (222)
T ss_pred EEecCCcccCCCc
Confidence 8887664455554
No 134
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.11 E-value=8.5e+02 Score=27.05 Aligned_cols=141 Identities=17% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcCCCceeEEeeccCCCCC--------ChHHHHHHHhcCC--------CCCCeeEEEEecc-ccchHHHH
Q 047247 168 HVASNGAILEALDGETKLHIIDMSNTLCT--------QWPTLLEALATRN--------DETPHLKLTVVVT-VSLVRLVM 230 (386)
Q Consensus 168 ~~tANqaILeA~~g~~~VHIIDf~i~~G~--------QWpsLiqaLA~R~--------~gpP~LRIT~I~~-~~~~~~~l 230 (386)
.+++|-|..=|.. .++|-+||.|...|. ..+.|.+.|.... .+.+.|.|-..+. +......+
T Consensus 562 t~a~nLA~~lA~~-g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~ll 640 (754)
T TIGR01005 562 DIEANAAALIASG-GKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITELL 640 (754)
T ss_pred HHHHHHHHHHHhC-CCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCCeeEecCCCCCCCHHHHh
Confidence 4566666655544 457999999987531 1122333332211 1122333322222 11111111
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeecCCccccccccccccCCCceEEEeecccccccccchHHHHHHHHHhcCCcEEEEee
Q 047247 231 KEIGQRMEKFARLMGVPFEFKVITGLNRLVELTKGTLGVKEDEAVAVNCIGALRRVAVEERGAVIQMFQSLKPKVVTIVE 310 (386)
Q Consensus 231 ~etg~rL~~fA~~lgipFeF~~v~~~~~~e~l~~~~L~~~~~EaLaVN~~~~Lh~l~~~~r~~vL~~ir~L~P~vvvlvE 310 (386)
.+.++.++-+.+.=.|+|..|.+.-.+...+...|-...|.+|+| + .............++.++..+++++-++-
T Consensus 641 --~~~~~~~~l~~l~~~yD~IiID~pp~~~~~d~~~l~~~~D~vl~v-~--~~~~~~~~~~~~~~~~l~~~~~~~~Gvvl 715 (754)
T TIGR01005 641 --ASPAMFSLVIHARLYSDCVVVDVGTADPVRDMRAAARLAIIMLLV-T--AYDRVVVECGRADAQGISRLNGEVTGVFL 715 (754)
T ss_pred --ccHHHHHHHHHHHhhCCEEEEcCCCcchhHHHHHhhhhCCeEEEE-E--EeCceeHHHHHHHHHHHHhcCCceEEEEe
Confidence 223444444445556888888763111112222222223344433 2 22222223455677788888888776665
Q ss_pred ecCC
Q 047247 311 EEAD 314 (386)
Q Consensus 311 ~ea~ 314 (386)
...+
T Consensus 716 N~~~ 719 (754)
T TIGR01005 716 NMLD 719 (754)
T ss_pred cCCC
Confidence 4444
No 135
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.03 E-value=5.7e+02 Score=24.37 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=23.0
Q ss_pred ceeEEeeccCCCCCChHHHHHHHhcCCCCCCeeEEEEecc
Q 047247 183 TKLHIIDMSNTLCTQWPTLLEALATRNDETPHLKLTVVVT 222 (386)
Q Consensus 183 ~~VHIIDf~i~~G~QWpsLiqaLA~R~~gpP~LRIT~I~~ 222 (386)
+.-+|+|+|.|.|.--..|.+.+... ....++||+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~ 120 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDI 120 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECC
Confidence 44579999999996444444433221 1257999995
Done!