Your job contains 1 sequence.
>047248
MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIR
TGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHP
RDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPV
YPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQ
LGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPE
RPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYG
ICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRL
SLPETRQMSSGDDEIDTEG
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047248
(439 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 1013 3.3e-102 1
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 903 1.5e-90 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 888 5.9e-89 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 825 2.8e-82 1
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 752 1.1e-80 2
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 578 4.2e-56 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 531 4.0e-51 1
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 403 1.5e-37 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 268 6.6e-23 1
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 96 1.3e-07 2
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 139 1.4e-06 1
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 124 5.9e-06 2
UNIPROTKB|F1MXR8 - symbol:ZC3H3 "Uncharacterized protein"... 138 1.0e-05 1
UNIPROTKB|I3LVF0 - symbol:I3LVF0 "Uncharacterized protein... 126 7.0e-05 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 121 7.1e-05 1
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 96 0.00011 2
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 90 0.00021 3
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 90 0.00021 3
UNIPROTKB|F1M3I4 - symbol:Mkrn2 "Protein Mkrn2" species:1... 90 0.00021 3
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 104 0.00022 2
UNIPROTKB|G3MWV8 - symbol:ZFP36 "Tristetraprolin" species... 118 0.00032 1
UNIPROTKB|P53781 - symbol:ZFP36 "Tristetraprolin" species... 118 0.00032 1
UNIPROTKB|Q0VCR3 - symbol:ZFP36 "Tristetraprolin" species... 118 0.00032 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 115 0.00035 1
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 115 0.00035 1
DICTYBASE|DDB_G0270816 - symbol:DDB_G0270816 "Zinc finger... 108 0.00039 2
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 114 0.00046 1
UNIPROTKB|Q6S9E0 - symbol:ZFP36 "Tristetraprolin" species... 116 0.00053 1
UNIPROTKB|Q8IXZ2 - symbol:ZC3H3 "Zinc finger CCCH domain-... 122 0.00056 1
TAIR|locus:2013758 - symbol:AT1G29560 species:3702 "Arabi... 119 0.00062 1
UNIPROTKB|P26651 - symbol:ZFP36 "Tristetraprolin" species... 115 0.00069 1
UNIPROTKB|D0VE66 - symbol:LOC100623625 "Tristetraprolin" ... 115 0.00069 1
RGD|620722 - symbol:Zfp36 "zinc finger protein 36" specie... 114 0.00086 1
UNIPROTKB|P47973 - symbol:Zfp36 "Tristetraprolin" species... 114 0.00086 1
DICTYBASE|DDB_G0285973 - symbol:DDB_G0285973 "Butyrate re... 116 0.00088 1
TAIR|locus:2827287 - symbol:NERD "Needed for RDR2-indepen... 123 0.00089 1
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 206/416 (49%), Positives = 263/416 (63%)
Query: 27 QDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAR 86
Q+++W++ L S S PERPG PDC+YY+RTG+C +G CR+NHP +R AT R
Sbjct: 29 QESMWRLGLG------SDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVR 82
Query: 87 IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIEC 146
G YPER G+P CQ+YLKTGTCKFGA+CKFHHP++ G V LN+ GYP+R + EC
Sbjct: 83 ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNEC 142
Query: 147 AYYLRTGQCKFGSTCKFHHPQPNNMMVSL--RGSP-VYPTVQSPTTPSQQSYAGGITNWS 203
+YYL+TGQCKFG TCKFHHPQP V +P YP+VQS P Q Y G ++
Sbjct: 143 SYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQS-LMPDQ--YGGPSSSLR 199
Query: 204 RA-SFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGA 262
A + +P QG +Y PMLL G+V +PGW+ YS + S + S Q G + +YG
Sbjct: 200 VARTLLPGSYMQG--AYGPMLLTPGVVPIPGWSPYSAPV-SPALSPGAQHAVGATSLYGV 256
Query: 263 SR--QTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGA 320
++ T PS G ++SS P G +Q+E FPERPG+PECQ+Y+KTGDCKFG
Sbjct: 257 TQLTSTTPSLPGVYPSLSS------PTG--VIQKEQAFPERPGEPECQYYLKTGDCKFGT 308
Query: 321 VCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYN 380
C+FHHPR+R+ P +CVLSPIGLPLRPG C FY + G CKFG +CKFDHPMG YN
Sbjct: 309 SCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYN 368
Query: 381 LSASSSADAPVRRFLGSSSATGAL----NLSSEGLVEAGS--GRRLSLPETRQMSS 430
SASS ADAPV + SS GAL + SS L+ G+ +P +R S+
Sbjct: 369 PSASSLADAPVAPY-PVSSLLGALAAAPSSSSTELIAGGAKDAYMTGVPTSRSTSN 423
Score = 176 (67.0 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 56/172 (32%), Positives = 77/172 (44%)
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ----PN-NMMVSLRGSPVYPTVQSPTTPS 191
+P RP E EC YYL+TG CKFG++CKFHHP+ P N ++S G P+ P VQ T
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 192 QQSYAGGITNWSRASFIPSPRWQGPSSYAPML--LPQGMVSVPGWNTYSGQLGSVSSSEN 249
Q G + P G Y P L V+ ++ G L + SS +
Sbjct: 346 QN----GFCKFGSTCKFDHP--MGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSS 399
Query: 250 LQQTSGNSQ-IYGASRQTEPSNSG-SQGTMSSFRSGSVPVGFYALQRESVFP 299
+ +G ++ Y T S S S G + S GS+P L +S P
Sbjct: 400 TELIAGGAKDAYMTGVPTSRSTSNISAGLIFSQSGGSIPFSELQLSSQSSLP 451
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 182/398 (45%), Positives = 240/398 (60%)
Query: 29 ALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIK 88
++W++ LR + PERP EPDC YY+RTG+C +G+ CRFNHP NR + R +
Sbjct: 32 SMWRLGLRGGGG-GGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTE 90
Query: 89 -GDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAG--IAGRVSLNVLGYPLRPNEIE 145
G++PER+GQP CQ++++TGTCKFGA+CK+HHPR G VSLN +G+PLRP E E
Sbjct: 91 AGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKE 150
Query: 146 CAYYLRTGQCKFGSTCKFHHPQPNNMMV-------SLRGSP-VYPTVQSPTTPSQQSYAG 197
C+Y++RTGQCKFGSTC++HHP P + L P +YP++QS T PS Q Y
Sbjct: 151 CSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSSQQY-- 208
Query: 198 GITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNS 257
G+ +R +P Q P Y M+LP GMV GWN Y + S S Q + G S
Sbjct: 209 GVV-LARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASV-SAMPSPGTQPSMGTS 266
Query: 258 QIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCK 317
+YG + PS +++SG G +E FP+RP QPECQ++M+TGDCK
Sbjct: 267 SVYGIT-PLSPS-------APAYQSGPSSTG--VSNKEQTFPQRPEQPECQYFMRTGDCK 316
Query: 318 FGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGI- 376
FG CRFHHP E P LS IGLPLRPG C ++++GICKFGP+CKFDH +G
Sbjct: 317 FGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSS 375
Query: 377 -FTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVE 413
+Y+ S SS D PV + SS T A + SS+ E
Sbjct: 376 SLSYSPSPSSLTDMPVAPY-PSSLGTLAPSSSSDQCTE 412
Score = 188 (71.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 45/138 (32%), Positives = 67/138 (48%)
Query: 6 GISLSRGAAVTEGPS-LSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLC 64
G S G + G + LSPS A T + + + P+RP +P+C Y++RTG C
Sbjct: 258 GTQPSMGTSSVYGITPLSPSA--PAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDC 315
Query: 65 RFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124
+FG +CRF+HP A+ P R G C ++ + G CKFG CKF H +
Sbjct: 316 KFGTSCRFHHPMEAASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSS 375
Query: 125 GIAGRVSLNVL-GYPLRP 141
++ S + L P+ P
Sbjct: 376 SLSYSPSPSSLTDMPVAP 393
Score = 155 (59.6 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 48/157 (30%), Positives = 69/157 (43%)
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ----PNNMMVSLRGSPVYPTVQSPTTPSQ 192
+P RP + EC Y++RTG CKFG++C+FHHP P +S G P+ P P T
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPLRPGAV-PCTHFA 355
Query: 193 QSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSV---SSSEN 249
Q GI + A SY+P P + +P Y LG++ SSS+
Sbjct: 356 QH---GICKFGPACKFDHSLGSSSLSYSPS--PSSLTDMPV-APYPSSLGTLAPSSSSDQ 409
Query: 250 LQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVP 286
+ +S I + T S + + G S S P
Sbjct: 410 CTELISSSSIEPITTTTGGSETVAAGVSSMTSDVSHP 446
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 190/411 (46%), Positives = 249/411 (60%)
Query: 30 LWQMNLRTNEAMESG--SLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI 87
+W++ L G S PERP EPDC YY+RTG+C +G+ CRFNHP +R I R
Sbjct: 33 MWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRG 92
Query: 88 K-GDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAG--IAGRVSLNVLGYPLRPNEI 144
+ G PER+G P CQ++++TGTCKFGA+CK+HHPR G VSL+ LGYPLRP E
Sbjct: 93 EAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEK 152
Query: 145 ECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSP----------------VYPTVQSPT 188
EC+YYLRTGQCKFG TC+F+HP P ++++G P +YPT+QS +
Sbjct: 153 ECSYYLRTGQCKFGLTCRFNHPVP----LAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQS 208
Query: 189 TPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSE 248
PS Q Y +T R SF+ Q P PM+LP GMV GWN Y L S S
Sbjct: 209 IPSSQQYGLVLT---RPSFLTGSYLQSPYG-PPMVLPPGMVPYSGWNPYQASL-SAMPSP 263
Query: 249 NLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQ 308
Q + G+S IYG + PS + GT S S + + +E FP+RP QPECQ
Sbjct: 264 GTQPSIGSSSIYGLT-PLSPSATAYTGTYQSVPSSN------STSKE--FPQRPDQPECQ 314
Query: 309 FYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSC 368
++M+TGDCKFG+ CR+HHP + + P VLS IGLPLRPG C ++++GICKFGP+C
Sbjct: 315 YFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPAC 374
Query: 369 KFDHPMGI-FTYNLSASSSADAPVRRF-LGSSSATGA---LNLSSEGLVEA 414
KFDH M +Y+ SASS D PV + +GSSS +G+ ++ S+E EA
Sbjct: 375 KFDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEPTKEA 425
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 174/320 (54%), Positives = 212/320 (66%)
Query: 17 EGPSLSPSLNQDALWQMNLRTNEAME-SGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
E LSP LNQ+A+WQMNL +++ M GS PER GEPDC+YYIRTGLCRFG+TCRFNHP
Sbjct: 9 ESTFLSPLLNQNAMWQMNLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
Query: 76 PNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVL 135
+RKL IATARIKG+YPER+GQPEC++YLKTGTCKFG TCKFHHPR+KAGI G VS+NVL
Sbjct: 69 HDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVL 128
Query: 136 GYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPN--NMMVSLRGSPVYPTVQSPTTPSQQ 193
YPLRPNE +C+Y+LR GQCKFG TCKF+HPQ N+MVS+RGSPVY +QS T Q
Sbjct: 129 SYPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLT--GQP 186
Query: 194 SYAGGITNWSRASFIPSP-RWQGPSSYAPMLLPQGMVSVPGWNT-YSGQLGSVS-SSENL 250
SY+ WSR SF+ +P R Q PS +A QG + G+++ S LG + EN+
Sbjct: 187 SYS-----WSRTSFVANPPRLQDPSGFASG--SQGGLFSSGFHSGNSVPLGFYALPRENV 239
Query: 251 -QQTSGNS--QIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPEC 307
+ G Q Y +T G+ R P L + P RPG+P C
Sbjct: 240 FPERPGQPECQFY---MKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGL-PLRPGEPLC 295
Query: 308 QFYMKTGDCKFGAVCRFHHP 327
FY + G CKFG C+F HP
Sbjct: 296 VFYSRYGICKFGPSCKFDHP 315
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 174/362 (48%), Positives = 223/362 (61%)
Query: 84 TARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLG-YPLRPN 142
T + G YPER G+P+C YY++TG C+FG+TC+F+HP D+ + + + G YP R
Sbjct: 32 TMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIA--TARIKGEYPERIG 89
Query: 143 EIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNW 202
+ EC +YL+TG CKFG TCKFHHP+ N + GS + P P++
Sbjct: 90 QPECEFYLKTGTCKFGVTCKFHHPR-NK--AGIDGSVSVNVLSYPLRPNEDD-CSYFLRI 145
Query: 203 SRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGA 262
+ F + ++ P + + L MVSV G YS L S++ + S S +
Sbjct: 146 GQCKFGGTCKFNHPQTQSTNL----MVSVRGSPVYSA-LQSLTGQPSYSW-SRTSFVANP 199
Query: 263 SRQTEPSN--SGSQGTM--SSFRSG-SVPVGFYALQRESVFPERPGQPECQFYMKTGDCK 317
R +PS SGSQG + S F SG SVP+GFYAL RE+VFPERPGQPECQFYMKTGDCK
Sbjct: 200 PRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCK 259
Query: 318 FGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIF 377
FG VC+FHHPR+R P PDCVLS +GLPLRPGEPLC+FYSRYGICKFGPSCKFDHPM +F
Sbjct: 260 FGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVF 319
Query: 378 TYNLSASSSADAPVRRFLGSSSATGAL-NLSSEGLVEAGSGRRLSLPETRQMSSGDDEID 436
TYN + +S + P ++ T L NL VEA + SLPET S+ D +D
Sbjct: 320 TYNNNTASPS--PSSSLHQETAITTELRNLLVSSSVEA---KPTSLPETT--SAKDTIVD 372
Query: 437 TE 438
+
Sbjct: 373 AQ 374
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 752 (269.8 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 159/279 (56%), Positives = 187/279 (67%)
Query: 1 MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIR 60
M F AG+ +S SLSP +NQDA+WQMNL ++E ME+GS PERPGEPDCSYYIR
Sbjct: 1 MDFNAGVPMS---------SLSPLMNQDAMWQMNLSSDETMETGSYPERPGEPDCSYYIR 51
Query: 61 TGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHP 120
TGLCRFG+TCRFNHP +R+L IATAR++G+YPER+GQPEC+YYLKTGTCKFG TCKFHHP
Sbjct: 52 TGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHP 111
Query: 121 RDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPN--NMMVSLRGS 178
R+KAGIAGRVSLN+LGYPLR NE++CAY+LRTG CKFG TCKF+HPQP NMMV G
Sbjct: 112 RNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQ 171
Query: 179 PVYPT-----VQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPG 233
YP + SP SYA I +P W P Y+ L G VS G
Sbjct: 172 QSYPWSRASFIASPRWQDPSSYASLIMP---QGVVPVQGWN-P--YSGQL---GSVSPSG 222
Query: 234 WNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSG 272
G+ + NLQQ N I S Q++ S SG
Sbjct: 223 -------TGNDQNYRNLQQ---NETIESGS-QSQGSFSG 250
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 147/251 (58%), Positives = 174/251 (69%)
Query: 182 PTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQL 241
PT T QQSY WSRASFI SPRWQ PSSYA +++PQG+V V GWN YSGQL
Sbjct: 161 PTNMMVPTSGQQSYP-----WSRASFIASPRWQDPSSYASLIMPQGVVPVQGWNPYSGQL 215
Query: 242 GSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQ--GTMSSFRSGS-VPVG-FYALQRESV 297
GSVS S +GN Q Y +Q E SGSQ G+ S + GS VP+G +YAL RE+V
Sbjct: 216 GSVSPSG-----TGNDQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENV 270
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYS 357
FPERPGQPECQFYMKTGDCKFG VC+FHHPR+R P PDC+LS IGLPLRPGEPLC+FY+
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 358 RYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLS-SEGLVEAGS 416
RYGICKFGPSCKFDHPM +FTY+ +AS + D V G S L++S + S
Sbjct: 331 RYGICKFGPSCKFDHPMRVFTYDNTASET-DEVVETSTGKSRR---LSVSETRQAATTSS 386
Query: 417 GRRLSLPETRQ 427
G+ ++ T+Q
Sbjct: 387 GKDTTIDNTQQ 397
Score = 268 (99.4 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 45/76 (59%), Positives = 53/76 (69%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYL 150
+PER GQPECQ+Y+KTG CKFG CKFHHPRD+ L+ +G PLRP E C +Y
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 151 RTGQCKFGSTCKFHHP 166
R G CKFG +CKF HP
Sbjct: 331 RYGICKFGPSCKFDHP 346
Score = 239 (89.2 bits), Expect = 8.8e-18, P = 8.8e-18
Identities = 40/76 (52%), Positives = 52/76 (68%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYS 357
+PER GQPEC++Y+KTG CKFG C+FHHPR + L+ +G PLR E C ++
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFL 141
Query: 358 RYGICKFGPSCKFDHP 373
R G CKFG +CKF+HP
Sbjct: 142 RTGHCKFGGTCKFNHP 157
Score = 225 (84.3 bits), Expect = 3.9e-16, P = 3.9e-16
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYS 357
+PERPG+P+C +Y++TG C+FG+ CRF+HPR+R L + + P R G+P C +Y
Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYYL 95
Query: 358 RYGICKFGPSCKFDHP 373
+ G CKFG +CKF HP
Sbjct: 96 KTGTCKFGVTCKFHHP 111
Score = 213 (80.0 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKG-DYPERVGQPECQYYLK 105
PERPG+P+C +Y++TG C+FG C+F+HP +R+ + P R G+P C +Y +
Sbjct: 272 PERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTR 331
Query: 106 TGTCKFGATCKFHHP 120
G CKFG +CKF HP
Sbjct: 332 YGICKFGPSCKFDHP 346
Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 118 HHPRDKAGIAGRVSL---NVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ-----PN 169
++P + G +L NV +P RP + EC +Y++TG CKFG+ CKFHHP+ P
Sbjct: 251 YNPGSSVPLGGYYALPRENV--FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPP 308
Query: 170 NMMVSLRGSPVYP 182
+ ++S G P+ P
Sbjct: 309 DCLLSSIGLPLRP 321
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
+ S LP RPGEP C +Y R G+C+FG +C+F+HP
Sbjct: 312 LSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
Score = 77 (32.2 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 56/192 (29%), Positives = 79/192 (41%)
Query: 254 SGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKT 313
+GN Q Y +Q E SGSQ + SF SG P L P PE +
Sbjct: 223 TGNDQNYRNLQQNETIESGSQ-SQGSF-SGYNPGSSVPLGGYYALPRENVFPE-----RP 275
Query: 314 GDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGE-----PLCIFYSRYGI-CKFG-P 366
G + C+F+ + DC + P + P C+ S G+ + G P
Sbjct: 276 GQPE----CQFY------MKTGDCKFGTVCKFHHPRDRQAPPPDCLL-SSIGLPLRPGEP 324
Query: 367 SCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSG--RRLSLPE 424
C F GI + S D P+R F ++A+ ++ +VE +G RRLS+ E
Sbjct: 325 LCVFYTRYGICKFG--PSCKFDHPMRVFTYDNTAS-----ETDEVVETSTGKSRRLSVSE 377
Query: 425 TRQM---SSGDD 433
TRQ SSG D
Sbjct: 378 TRQAATTSSGKD 389
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 133/346 (38%), Positives = 182/346 (52%)
Query: 27 QDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAR 86
+DA +M + E P+RPGE DC +Y+RTGLC +G++CR+NHP + L A
Sbjct: 25 EDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTH--LPQDVAY 82
Query: 87 IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIEC 146
K + PER+GQP+C+Y+LKTG CK+G TCK+HHP+D+ G A V NV+G P+R E C
Sbjct: 83 YKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNG-AQPVMFNVIGLPMRLGEKPC 141
Query: 147 AYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRAS 206
YYLRTG C+FG CKFHHPQP+N + G +P + YA G+T S
Sbjct: 142 PYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPA-------ADLRYASGLTMMSTYG 194
Query: 207 FIPSPRWQGPSSYAPMLL-P-QGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIY---- 260
+P P Q P SY P+L+ P QG + GW Y S+ + +N SG+S
Sbjct: 195 TLPRP--QVPQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSSASMAMAV 252
Query: 261 ----GASRQTE-PS-----NSGS--QGTMSSFRSGSVPVGFY--ALQRESVFPERPGQPE 306
G S ++ P N+G+ G + V + +L V P RPGQP
Sbjct: 253 ALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPA 312
Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPL 352
C + G CKFG C+F HP +LP P ++ LP P+
Sbjct: 313 CGNFRSYGFCKFGPNCKFDHP---MLPYPGLTMAT-SLPTPFASPV 354
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 96/325 (29%), Positives = 152/325 (46%)
Query: 78 RKLAIATARIK--GDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVL 135
RK+ + ++ YP+R G+ +CQ+YL+TG C +G++C+++HP + V+
Sbjct: 29 RKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTH---LPQDVAYYKE 85
Query: 136 GYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSY 195
P R + +C Y+L+TG CK+G TCK+HHP+ N + + + ++ P
Sbjct: 86 ELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYL 145
Query: 196 AGGITNWSRASFI--PSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQ- 252
G + A P P ++Y P + T G++ + Q
Sbjct: 146 RTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGTLPRPQVPQSY 205
Query: 253 -------TSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQP 305
+ G G + SNS + SGS A+ E QP
Sbjct: 206 VPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQP 265
Query: 306 ECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFG 365
EC+F+M TG CK+G C++ HP R+ P +++P LP RPG+P C + YG CKFG
Sbjct: 266 ECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFG 325
Query: 366 PSCKFDHPMGIFTYNLSASSSADAP 390
P+CKFDHPM + L+ ++S P
Sbjct: 326 PNCKFDHPMLPYP-GLTMATSLPTP 349
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 122/350 (34%), Positives = 189/350 (54%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHP--------PNRKLAIATARIKGDYPERVGQP 98
P+R GE DC++Y++T C+FG +CRF+HP P+ K A +YPER G+P
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPN--EEYPERPGEP 229
Query: 99 ECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFG 158
+C YY+KT CK+G+ CKF+HPR++A ++ ++ P RP+E C +Y++TG+CKFG
Sbjct: 230 DCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSL---PERPSEPMCTFYMKTGKCKFG 286
Query: 159 STCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSS 218
+CKFHHP+ ++ + + +V + P TN +F P+ S
Sbjct: 287 LSCKFHHPK--DIQLPSSSQDIGSSVGLTSEPDA-------TNNPHVTFTPALYHN--SK 335
Query: 219 YAPMLLPQGMVSVPGW-NTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQG-- 275
P+ G V P + T S + G+ + ++T+ Q G + SN+ +
Sbjct: 336 GLPVR--SGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLG 393
Query: 276 ----TMSSFRSGSVP-VGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRER 330
S +++ + P +G + + +P+RPGQ EC +YMKTG+CKFG C+FHHP +R
Sbjct: 394 LVTPATSFYQTLTQPTLGVIS----ATYPQRPGQSECDYYMKTGECKFGERCKFHHPADR 449
Query: 331 LLPV-------PDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHP 373
L + P+ LS G P R G C +Y + G CK+G +CKFDHP
Sbjct: 450 LSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 283 (104.7 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 99/363 (27%), Positives = 150/363 (41%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPR--DKAGIAGRVSLNVLG---YPLRPNEIE 145
YP+R G+ +C +Y++T TCKFG +C+F HP + GI V+ YP RP E +
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 146 CAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRA 205
C YY++T +CK+GS CKF+HP+ VS+ P + P+ P Y +
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPR-EEAAVSVETQDSLP--ERPSEPMCTFYM----KTGKC 283
Query: 206 SFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQ 265
F S ++ P + LP + S L S + N + +Y S+
Sbjct: 284 KFGLSCKFHHPKD---IQLPSSSQDIGS----SVGLTSEPDATNNPHVTFTPALYHNSKG 336
Query: 266 TEPSNSGSQGTMSSFRSGSVPVG----FYALQRESVFPERPGQPECQFYMKTGDCKFGAV 321
P SG ++GS G + +R + P+ G T + G V
Sbjct: 337 L-PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLV 395
Query: 322 CRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNL 381
+ L V+S P RPG+ C +Y + G CKFG CKF HP + +
Sbjct: 396 TPATSFYQTLTQPTLGVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSA-M 453
Query: 382 SASSSADAPVRRFL-GSSSATGALNLS---SEGLVEAGSGRRLSLPETRQ-MSSGDDEID 436
+ + V+ L G GALN G + G+ + P + M+ E D
Sbjct: 454 TKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMAKTTSEAD 513
Query: 437 TEG 439
G
Sbjct: 514 AAG 516
Score = 270 (100.1 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 46/93 (49%), Positives = 58/93 (62%)
Query: 87 IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGR-------VSLNVLGYPL 139
I YP+R GQ EC YY+KTG CKFG CKFHHP D+ + V L++ GYP
Sbjct: 413 ISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPR 472
Query: 140 RPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMM 172
R + C YY++TG CK+G+TCKF HP P +M
Sbjct: 473 REGALNCPYYMKTGTCKYGATCKFDHPPPGEVM 505
Score = 240 (89.5 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 48/124 (38%), Positives = 70/124 (56%)
Query: 5 AGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLC 64
AG++ S ++ T +L + +Q + + S + P+RPG+ +C YY++TG C
Sbjct: 376 AGVNYSLVSSNTANLNLGLVTPATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGEC 435
Query: 65 RFGATCRFNHPPNR-----KLAIATARIK---GDYPERVGQPECQYYLKTGTCKFGATCK 116
+FG C+F+HP +R K A +K YP R G C YY+KTGTCK+GATCK
Sbjct: 436 KFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCK 495
Query: 117 FHHP 120
F HP
Sbjct: 496 FDHP 499
Score = 232 (86.7 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 58/173 (33%), Positives = 83/173 (47%)
Query: 18 GPSLSPSLNQDALWQMNLRTNEAM--ESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
G S+ + DA ++ A+ S LP R GE DC +Y++TG C++GATCR+NHP
Sbjct: 307 GSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHP 366
Query: 76 PNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATC---KFHHPRDKAGIAGRVSL 132
TA I P+ G T G F+ + + G +S
Sbjct: 367 ER------TAFI----PQAAGVNYSLVSSNTANLNLGLVTPATSFYQTLTQPTL-GVISA 415
Query: 133 NVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQ 185
YP RP + EC YY++TG+CKFG CKFHHP + + + +P P V+
Sbjct: 416 T---YPQRPGQSECDYYMKTGECKFGERCKFHHPA-DRLSAMTKQAPQQPNVK 464
Score = 185 (70.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 297 VFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLP---VPDCVLSPI----GLPLRPG 349
++P+R G+ +C YM+T CKFG CRF HP +P +PD +P+ P RPG
Sbjct: 170 IYPQRAGEKDCTHYMQTRTCKFGESCRFDHPI--WVPEGGIPDWKEAPVVPNEEYPERPG 227
Query: 350 EPLCIFYSRYGICKFGPSCKFDHP 373
EP C +Y + CK+G CKF+HP
Sbjct: 228 EPDCPYYIKTQRCKYGSKCKFNHP 251
Score = 131 (51.2 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 45 SLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 80
SLPERP EP C++Y++TG C+FG +C+F+HP + +L
Sbjct: 264 SLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQL 299
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 38 NEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPP 76
N + P R G +C YY++TG C++GATC+F+HPP
Sbjct: 462 NVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPP 500
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 116/338 (34%), Positives = 168/338 (49%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKT 106
P RPG DCS+Y+RTG C+FG++C+FNHP RK IA + + G+ L
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGK------LGL 161
Query: 107 GTCKFGATCKFHHPRDKAGIAGRVSLNV--LGYPLRPNEIECAYYLRTGQ--CKF---GS 159
CK+ F K G R + + G P LR G+ C +
Sbjct: 162 IDCKY----YFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNG 217
Query: 160 TCKFHHP-QPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRW-QGPS 217
+CK+ + N+ + G P+ + S +++ T + ++ SPR G S
Sbjct: 218 SCKYGAECKFNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTS 277
Query: 218 SYAPMLLPQGMVSVPGWNT-YSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGT 276
+ P++L Q V N ++G SV SSE G ++ S +NS ++ +
Sbjct: 278 PFIPVMLSQTH-GVTSQNPEWNGYQASVYSSER-----G---VFSPSTTYLMNNSSAETS 328
Query: 277 M--SSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPV 334
M S +R + + E FPERP QPEC +YMKTGDCKF C++HHP+ RL +
Sbjct: 329 MLLSQYR--------HQMPAEE-FPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKL 379
Query: 335 PDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDH 372
P L+ GLPLRP + +C +YSRYGICKFGP+C+FDH
Sbjct: 380 PPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
Score = 217 (81.4 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 67/206 (32%), Positives = 89/206 (43%)
Query: 36 RTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP-PNRKLAIATARIKGDYPER 94
R N+ E + G DC YY RTG C++G TCRFNH P LA A P R
Sbjct: 145 RDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLR 204
Query: 95 VGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQ 154
G+ EC YY++ G+CK+GA CKF+HP D I G S + G N + +
Sbjct: 205 PGEVECPYYMRNGSCKYGAECKFNHP-DPTTIGGTDSPSFRGN----NGVSIGTFSPKAT 259
Query: 155 CKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPT------TPSQQSYAGGITNWSRASFI 208
+ ST + P+ N SP P + S T P Y + + R F
Sbjct: 260 FQASST-SWSSPRHVNGT-----SPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFS 313
Query: 209 PSPRW--QGPSSYAPMLLPQGMVSVP 232
PS + S+ MLL Q +P
Sbjct: 314 PSTTYLMNNSSAETSMLLSQYRHQMP 339
Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 303 GQPECQFYMKTGDCKFGAVCRFHH--PRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYG 360
G +C++Y +TG CK+G CRF+H P+ L P+ L+ +GLPLRPGE C +Y R G
Sbjct: 160 GLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPE--LNFLGLPLRPGEVECPYYMRNG 217
Query: 361 ICKFGPSCKFDHP 373
CK+G CKF+HP
Sbjct: 218 SCKYGAECKFNHP 230
Score = 197 (74.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 71/226 (31%), Positives = 103/226 (45%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHP-RDKAGIAGRVSLNVL---GYPLRPNEIEC 146
YP R G +C +Y++TG+CKFG++CKF+HP K IA + G L I+C
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKL--GLIDC 164
Query: 147 AYYLRTGQCKFGSTCKFHHPQPNNMMVS-----LRGSPVYP-TVQSPTTPSQQSYAGGIT 200
YY RTG CK+G TC+F+H P + + S G P+ P V+ P S G
Sbjct: 165 KYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG-- 222
Query: 201 NWSRASFI-PSPRWQGPSSYAPMLLPQGMVSVPGWN---TYSGQLGSVSSSENLQQTSGN 256
+ F P P G + +P VS+ ++ T+ S SS ++ TS
Sbjct: 223 --AECKFNHPDPTTIGGTD-SPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPF 279
Query: 257 -----SQIYGASRQTEPSNSGSQGTM-SSFRSGSVPVGFYALQRES 296
SQ +G + Q P +G Q ++ SS R P Y + S
Sbjct: 280 IPVMLSQTHGVTSQN-PEWNGYQASVYSSERGVFSPSTTYLMNNSS 324
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 37/81 (45%), Positives = 48/81 (59%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNR--KLAIATARIKGDYPERVGQP 98
M + PERP +P+CSYY++TG C+F C+++HP NR KL KG P R Q
Sbjct: 338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKG-LPLRPDQN 396
Query: 99 ECQYYLKTGTCKFGATCKFHH 119
C YY + G CKFG C+F H
Sbjct: 397 ICTYYSRYGICKFGPACRFDH 417
Score = 182 (69.1 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 41/111 (36%), Positives = 59/111 (53%)
Query: 288 GFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVP--DCVLSPIGLP 345
G+ + E+V+P RPG +C FYM+TG CKFG+ C+F+HP R + + V
Sbjct: 97 GWSENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDG 156
Query: 346 LRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLG 396
+ G C +Y R G CK+G +C+F+H + S A AP FLG
Sbjct: 157 GKLGLIDCKYYFRTGGCKYGETCRFNH-------TIPKSGLASAPELNFLG 200
Score = 86 (35.3 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 345 PLRPGEPLCIFYSRYGICKFGPSCKFDHP 373
P RP +P C +Y + G CKF +CK+ HP
Sbjct: 344 PERPDQPECSYYMKTGDCKFKFNCKYHHP 372
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 268 (99.4 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 42/78 (53%), Positives = 56/78 (71%)
Query: 295 ESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCI 354
E FPERPG+PEC +Y++TG+C C++HHP+ P C L+ GLPLRPG+ +C
Sbjct: 3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICP 62
Query: 355 FYSRYGICKFGPSCKFDH 372
YSR+GIC+ GP+CKFDH
Sbjct: 63 HYSRFGICRSGPTCKFDH 80
Score = 214 (80.4 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYL 150
+PER G+PEC YYL+TG C CK+HHP++ + +LN G PLRP + C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 151 RTGQCKFGSTCKFHH 165
R G C+ G TCKF H
Sbjct: 66 RFGICRSGPTCKFDH 80
Score = 190 (71.9 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 37/81 (45%), Positives = 46/81 (56%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI--ATARIKGDYPERVGQP 98
M PERPGEP+CSYY+RTG C C+++HP N + T KG P R GQ
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKG-LPLRPGQA 59
Query: 99 ECQYYLKTGTCKFGATCKFHH 119
C +Y + G C+ G TCKF H
Sbjct: 60 ICPHYSRFGICRSGPTCKFDH 80
Score = 121 (47.7 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ---PNNMMVSL--RGSPVYP 182
+P RP E EC+YYLRTG C CK+HHP+ P+ +L +G P+ P
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRP 56
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 96 (38.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/73 (35%), Positives = 32/73 (43%)
Query: 305 PECQFYMKTGDCKFGAVCRFHH--PRERLLPVP--D---CVLSPIGLPLRPGEPLCIFYS 357
PEC FY K G+C C F H P ++ P D C P+ +C+ Y
Sbjct: 41 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYL 99
Query: 358 RYGICKFGPSCKF 370
G C GPSCKF
Sbjct: 100 -VGFCPEGPSCKF 111
Score = 54 (24.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 144 IECAYYLRTGQCKFGSTCKFHH 165
+ C ++LR G CK G C+F H
Sbjct: 13 VVCKHWLR-GLCKKGDQCEFLH 33
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 26 NQDALWQMNLRTNEAM-ESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAT 84
++D Q +++ E M +S P RPG+ DC +Y++ GLCR+ ++CRFNHP R +
Sbjct: 31 DEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPV 90
Query: 85 ARIKGDYPERVGQPECQ 101
K V +P Q
Sbjct: 91 RICKHIMDRNVAEPMYQ 107
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 292 LQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERL--LPVPDC 337
+++ S +P RPG+ +CQFY+K G C++ + CRF+HP +R LPV C
Sbjct: 46 MRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRIC 93
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 124 (48.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 45/172 (26%), Positives = 63/172 (36%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C Y G C +G C F H + I P R P C+ + G C FG
Sbjct: 103 CRTYHTAGYCVYGTRCLFVHNLKEQRPIR--------PRRRNVP-CRTFRAFGVCPFGNR 153
Query: 115 CKFHHPRDKAGIAGRVSLNVLGYPLRPNEIE-----CAYYLRTGQCKFGSTCKFHHPQPN 169
C F H + G P + E + C + G C +G+ C+F H PN
Sbjct: 154 CHFLHVEGGSESDGAEEEQTWQPPSQSQEWKPRGALCRTFSAFGFCLYGTRCRFQHGLPN 213
Query: 170 NMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAP 221
+++G T + P Q + G I+ S PSP P+S P
Sbjct: 214 ----TIKGHNANHT----SWPQQMTNGGSISPISDTCTSPSPPSSSPTSALP 257
Score = 94 (38.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C Y +TGTCK+ C+F H + R +P E+ C Y G C +G+
Sbjct: 65 CSRYAETGTCKYAERCQFAHGLHDLHVPSR-------HPKYKTEL-CRTYHTAGYCVYGT 116
Query: 160 TCKFHH 165
C F H
Sbjct: 117 RCLFVH 122
Score = 83 (34.3 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 293 QRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPR---ERLLPVPDCVLSPIGLPL--R 347
++ + P R P C+ + G C FG C F H E + P +
Sbjct: 126 EQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQSQEWK 184
Query: 348 PGEPLCIFYSRYGICKFGPSCKFDH--PMGIFTYNLSASS 385
P LC +S +G C +G C+F H P I +N + +S
Sbjct: 185 PRGALCRTFSAFGFCLYGTRCRFQHGLPNTIKGHNANHTS 224
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
CS Y TG C++ C+F H + + +P+ + C+ Y G C +G
Sbjct: 65 CSRYAETGTCKYAERCQFAH------GLHDLHVPSRHPKYKTEL-CRTYHTAGYCVYGTR 117
Query: 115 CKFHH 119
C F H
Sbjct: 118 CLFVH 122
>UNIPROTKB|F1MXR8 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0010793 "regulation of mRNA export from nucleus"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793
OMA:TSLPGDK EMBL:DAAA02037469 EMBL:DAAA02037470 EMBL:DAAA02037471
EMBL:DAAA02037472 IPI:IPI00716772 Ensembl:ENSBTAT00000028621
Uniprot:F1MXR8
Length = 944
Score = 138 (53.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 86/325 (26%), Positives = 123/325 (37%)
Query: 6 GISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCR 65
G L R + S S SL A+ + +A ++ R E C YY R G C
Sbjct: 633 GRPLLRTGRLDPASSCSRSLASRAVQRSLAIVRQARQARQRRRRRKEEYCMYYNRFGRCN 692
Query: 66 FGATCRFNHPPNRKLAIATARIKGDYPERVG------------QPECQYYLKTGTCKFGA 113
G C + H P K+A+ T ++G + G P C Y+LK G C +
Sbjct: 693 RGERCPYVHDPE-KVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICS-NS 749
Query: 114 TCKFHHPRDKAGIAGRVSLNVL-GY-PL-----RPNEIECAYYLRTGQCKFGSTCKFHHP 166
+C + H V + L GY PL + + + C + R G C G+ C+ H
Sbjct: 750 SCPYSHVY--VSRKAEVCTDFLKGYCPLGAKCKKKHTLLCPDFSRRGVCPRGAQCQLLHR 807
Query: 167 QPNNMMVSLRGSPVYPTVQSP-TTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLP 225
P + R + PT P TP + SRAS PR PS+ L P
Sbjct: 808 NPKRL--GRRAAT--PTAPEPGNTPPR----------SRASTSHGPR--KPSA---ALRP 848
Query: 226 QGMVSVPGWNTYSGQLGSVSSSENLQQTSGNS-QIYGASRQTEPSNSGS-QGTMSSFRSG 283
+S P + +G SS L S + + Q +++G+ G +S S
Sbjct: 849 ARRMSSPPSSMAAGSTSPPSSPRVLAAASPSXLEPEELCLQAAEASAGAGSGGLSKLPS- 907
Query: 284 SVPVGFYALQRESVFPERPGQPECQ 308
F ALQ P GQP Q
Sbjct: 908 -----FIALQSS---PSPGGQPRAQ 924
>UNIPROTKB|I3LVF0 [details] [associations]
symbol:I3LVF0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:CU655901
Ensembl:ENSSSCT00000025766 OMA:REGSSAH Uniprot:I3LVF0
Length = 438
Score = 126 (49.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 74/270 (27%), Positives = 104/270 (38%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVG------------QPECQY 102
C YY R G C G C + H P K+A+ T ++G + G P C Y
Sbjct: 171 CMYYNRFGRCNRGQHCPYIHDPE-KVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSY 229
Query: 103 YLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVL-GY-PL-----RPNEIECAYYLRTGQC 155
+LK G C + C + H V + L GY PL + + + C + R G C
Sbjct: 230 FLK-GICS-NSNCPYSHVY--VSRRAEVCTDFLKGYCPLGAKCKKKHTLLCPDFSRRGVC 285
Query: 156 KFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQG 215
G+ C+ H N + R + +PT P +S A ++S P Q
Sbjct: 286 PRGTQCQLLHR--NRKRLGRRAA-------TPTAPEPRSRASTSHGPRKSSGAQRPARQT 336
Query: 216 PSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQG 275
SS P G S P + L + SSS + S AS + ++ S G
Sbjct: 337 TSS--PTAEAAGSASPP---SSPRVLPAASSSPSPCSPPSASASPSASLSLD-QDAASAG 390
Query: 276 TMSSFRSGSVPVGFYALQRESVFPERPGQP 305
T SS S +P F +LQ P GQP
Sbjct: 391 TGSSSLS-KLP-SFISLQSS---PSPGGQP 415
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 44/164 (26%), Positives = 63/164 (38%)
Query: 48 ERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI-----KGDYPERVGQ----- 97
++ G C ++++ C G+ C F H K + + KGD E + +
Sbjct: 34 DKSGTAVCEFFLKAA-CGKGSMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK 92
Query: 98 -PECQYYLKTGTCKFGATCKFHH--PRDKAGIAGRVSLNVLGY-PL----RPNEIECAYY 149
PEC +Y K G C C F H P K + PL R + C Y
Sbjct: 93 MPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRRTRRVICVNY 151
Query: 150 LRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQ 193
L G C G +CKF HP+ M + P+ Q PT + Q
Sbjct: 152 L-VGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKRAPQ 194
Score = 113 (44.8 bits), Expect = 0.00060, P = 0.00060
Identities = 29/76 (38%), Positives = 35/76 (46%)
Query: 305 PECQFYMKTGDCKFGAVCRFHH--PRERLLPVP--D---CVLSPIGLPLRPGEPLCIFYS 357
PEC FY K G+C C F H P ++ P D C P+ R +C+ Y
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRRTRRVICVNYL 152
Query: 358 RYGICKFGPSCKFDHP 373
G C GPSCKF HP
Sbjct: 153 -VGFCPEGPSCKFMHP 167
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 96 (38.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/73 (35%), Positives = 32/73 (43%)
Query: 305 PECQFYMKTGDCKFGAVCRFHH--PRERLLPVP--D---CVLSPIGLPLRPGEPLCIFYS 357
PEC FY K G+C C F H P ++ P D C P+ +C+ Y
Sbjct: 92 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYL 150
Query: 358 RYGICKFGPSCKF 370
G C GPSCKF
Sbjct: 151 -VGFCPEGPSCKF 162
Score = 54 (24.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 144 IECAYYLRTGQCKFGSTCKFHH 165
+ C ++LR G CK G C+F H
Sbjct: 64 VVCKHWLR-GLCKKGDQCEFLH 84
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 90 (36.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 58 YIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKF 117
Y G+CR G+ C F+H +A ++ P + C+YY K G C +GA C++
Sbjct: 10 YFMHGVCREGSQCLFSHD------LANSK-----PSTI----CKYYQK-GYCAYGARCRY 53
Query: 118 HHPRDKAGIAGRV 130
H + A G V
Sbjct: 54 DHTKPPAAAGGAV 66
Score = 57 (25.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 142 NEIECAYYLRTGQCKFGSTCKFHH 165
NE + Y G+C+FG C + H
Sbjct: 166 NEPQLCPYAAAGECRFGDACVYLH 189
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 298 FPERPGQPECQFYMK-TGDCKFGAVCRFHH--PRERL 331
F + G+ C+++ + G C FG+ C + H P RL
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRL 354
Score = 51 (23.0 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 26/91 (28%), Positives = 36/91 (39%)
Query: 349 GEPLCIFYSR-YGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLS 407
G+ C ++ + G C FG C + H Y + + P R+ L S N
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRH-----AYPDGRLAEPEKP-RKQLSSEGTVRFFN-- 374
Query: 408 SEGLVEAGSGRRLSLPETRQMSSGDDEIDTE 438
S L + R ETRQ+ S DD TE
Sbjct: 375 SVRLWDFIENR-----ETRQVPSTDDVDVTE 400
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 90 (36.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 58 YIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKF 117
Y G+CR G+ C F+H +A ++ P + C+YY K G C +GA C++
Sbjct: 10 YFMHGVCREGSQCLFSHD------LANSK-----PSTI----CKYYQK-GYCAYGARCRY 53
Query: 118 HHPRDKAGIAGRV 130
H + A G V
Sbjct: 54 DHTKPPAAAGGAV 66
Score = 57 (25.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 142 NEIECAYYLRTGQCKFGSTCKFHH 165
NE + Y G+C+FG C + H
Sbjct: 167 NEQQLCPYAAAGECRFGDACVYLH 190
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 298 FPERPGQPECQFYMK-TGDCKFGAVCRFHH--PRERL 331
F + G+ C+++ + G C FG+ C + H P RL
Sbjct: 319 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRL 355
Score = 51 (23.0 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 26/91 (28%), Positives = 36/91 (39%)
Query: 349 GEPLCIFYSR-YGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLS 407
G+ C ++ + G C FG C + H Y + + P R+ L S N
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRH-----AYPDGRLAEPEKP-RKQLSSEGTVRFFN-- 375
Query: 408 SEGLVEAGSGRRLSLPETRQMSSGDDEIDTE 438
S L + R ETRQ+ S DD TE
Sbjct: 376 SVRLWDFIENR-----ETRQVPSTDDVDVTE 401
>UNIPROTKB|F1M3I4 [details] [associations]
symbol:Mkrn2 "Protein Mkrn2" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 InterPro:IPR026293
PANTHER:PTHR11224:SF17 IPI:IPI00566412 Ensembl:ENSRNOT00000044916
ArrayExpress:F1M3I4 Uniprot:F1M3I4
Length = 417
Score = 90 (36.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 58 YIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKF 117
Y G+CR G+ C F+H +A ++ P + C+YY K G C +GA C++
Sbjct: 10 YFMHGVCREGSQCLFSHD------LANSK-----PSTI----CKYYQK-GYCAYGARCRY 53
Query: 118 HHPRDKAGIAGRV 130
H + A G V
Sbjct: 54 DHTKPPAAAGGAV 66
Score = 57 (25.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 142 NEIECAYYLRTGQCKFGSTCKFHH 165
NE + Y G+C+FG C + H
Sbjct: 167 NEQQLCPYAAAGECRFGDACVYLH 190
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 298 FPERPGQPECQFYMK-TGDCKFGAVCRFHH--PRERL 331
F + G+ C+++ + G C FG+ C + H P RL
Sbjct: 319 FKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRL 355
Score = 51 (23.0 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 26/91 (28%), Positives = 36/91 (39%)
Query: 349 GEPLCIFYSR-YGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLS 407
G+ C ++ + G C FG C + H Y + + P R+ L S N
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRH-----AYPDGRLAEPEKP-RKQLSSEGTVRFFN-- 375
Query: 408 SEGLVEAGSGRRLSLPETRQMSSGDDEIDTE 438
S L + R ETRQ+ S DD TE
Sbjct: 376 SVRLWDFIENR-----ETRQVPSTDDVDVTE 401
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 104 (41.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/76 (35%), Positives = 34/76 (44%)
Query: 305 PECQFYMKTGDCKFGAVCRFHHPRE--RLLPVPD-----CVLSPIGLPLRPGEPLCIFYS 357
PECQ + ++G C G C + H RE RL P C L P+ LC +Y
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGFCPLGPLCAKRHVRRRLCPYYV 177
Query: 358 RYGICKFGPSCKFDHP 373
G C GP+C HP
Sbjct: 178 A-GFCPEGPNCANAHP 192
Score = 53 (23.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 136 GYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVS 174
G+ L + C Y G C G C HP P+ + S
Sbjct: 37 GFGLVTDVPVCKAYSE-GHCPLGPACPDRHPTPSRVTTS 74
>UNIPROTKB|G3MWV8 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 EMBL:DAAA02047057 EMBL:DAAA02047055
EMBL:DAAA02047056 Ensembl:ENSBTAT00000011308 Uniprot:G3MWV8
Length = 324
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 43/143 (30%), Positives = 67/143 (46%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQASR-------HPKYKTELCHKFYLQ-GRCPYGS 158
Query: 160 TCKF-HHPQ-----PNNMMVSLRGSPVYPTVQSP--TTPSQQSYAG-GITNWSRASFIPS 210
C F H+P P + V LR S + + S T+P S AG +++WS F PS
Sbjct: 159 RCHFIHNPSEDLAAPGHPHV-LRQSISFSGLPSGRRTSPPPASLAGPSVSSWS---FSPS 214
Query: 211 PRWQGPSSYAPMLLPQGMVSVPG 233
P +L P + PG
Sbjct: 215 SSPPPPPGDL-LLSPSAFSAAPG 236
>UNIPROTKB|P53781 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0071889
"14-3-3 protein binding" evidence=ISS] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0017091 "AU-rich element binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0006950
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0017091
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
GO:GO:0070935 GO:GO:0032680 HOVERGEN:HBG008483 EMBL:L42319
IPI:IPI00698292 RefSeq:NP_776918.1 UniGene:Bt.3863
ProteinModelPortal:P53781 SMR:P53781 PRIDE:P53781 GeneID:282127
KEGG:bta:282127 CTD:7538 KO:K15308 NextBio:20805964 Uniprot:P53781
Length = 324
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 43/143 (30%), Positives = 67/143 (46%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQASR-------HPKYKTELCHKFYLQ-GRCPYGS 158
Query: 160 TCKF-HHPQ-----PNNMMVSLRGSPVYPTVQSP--TTPSQQSYAG-GITNWSRASFIPS 210
C F H+P P + V LR S + + S T+P S AG +++WS F PS
Sbjct: 159 RCHFIHNPSEDLAAPGHPHV-LRQSISFSGLPSGRRTSPPPASLAGPSVSSWS---FSPS 214
Query: 211 PRWQGPSSYAPMLLPQGMVSVPG 233
P +L P + PG
Sbjct: 215 SSPPPPPGDL-LLSPSAFSAAPG 236
>UNIPROTKB|Q0VCR3 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0071889 "14-3-3 protein binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0045638 "negative regulation of myeloid
cell differentiation" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IEA] [GO:0019957 "C-C
chemokine binding" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0007243 "intracellular protein kinase cascade"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0006950 GO:GO:0050728 GO:GO:0008270
GO:GO:0003729 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0010494 GO:GO:0060213 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GeneTree:ENSGT00530000063262 GO:GO:0032680
GO:GO:0050779 HOVERGEN:HBG008483 IPI:IPI00698292 UniGene:Bt.3863
OMA:RRLPIFN EMBL:DAAA02047057 EMBL:DAAA02047055 EMBL:DAAA02047056
EMBL:BC120043 SMR:Q0VCR3 Ensembl:ENSBTAT00000066266 Uniprot:Q0VCR3
Length = 325
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 43/143 (30%), Positives = 67/143 (46%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQASR-------HPKYKTELCHKFYLQ-GRCPYGS 158
Query: 160 TCKF-HHPQ-----PNNMMVSLRGSPVYPTVQSP--TTPSQQSYAG-GITNWSRASFIPS 210
C F H+P P + V LR S + + S T+P S AG +++WS F PS
Sbjct: 159 RCHFIHNPSEDLAAPGHPHV-LRQSISFSGLPSGRRTSPPPASLAGPSVSSWS---FSPS 214
Query: 211 PRWQGPSSYAPMLLPQGMVSVPG 233
P +L P + PG
Sbjct: 215 SSPPPPPGDL-LLSPSAFSAAPG 236
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 43/164 (26%), Positives = 61/164 (37%)
Query: 48 ERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI-----KGDYPERVGQ----- 97
++ G C ++++ C G C F H K + + KGD E + +
Sbjct: 34 DKSGAAVCEFFLKAA-CGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK 92
Query: 98 -PECQYYLKTGTCKFGATCKFHH--PRDKAGIAGRVSLNVLGY-PL----RPNEIECAYY 149
PEC +Y K G C C F H P K + PL + C Y
Sbjct: 93 MPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY 151
Query: 150 LRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQ 193
L G C G +CKF HP+ M + P+ Q PT + Q
Sbjct: 152 L-VGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKRTPQ 194
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 43/164 (26%), Positives = 61/164 (37%)
Query: 48 ERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI-----KGDYPERVGQ----- 97
++ G C ++++ C G C F H K + + KGD E + +
Sbjct: 34 DKSGAAVCEFFLKAA-CGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK 92
Query: 98 -PECQYYLKTGTCKFGATCKFHH--PRDKAGIAGRVSLNVLGY-PL----RPNEIECAYY 149
PEC +Y K G C C F H P K + PL + C Y
Sbjct: 93 MPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY 151
Query: 150 LRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQ 193
L G C G +CKF HP+ M + P+ Q PT + Q
Sbjct: 152 L-VGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKRAPQ 194
>DICTYBASE|DDB_G0270816 [details] [associations]
symbol:DDB_G0270816 "Zinc finger CCCH
domain-containing protein 14" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR002483
Pfam:PF01480 PROSITE:PS50103 dictyBase:DDB_G0270816
EMBL:AAFI02000005 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
eggNOG:NOG330419 RefSeq:XP_646803.1 ProteinModelPortal:Q55BM8
EnsemblProtists:DDB0202048 GeneID:8617776 KEGG:ddi:DDB_G0270816
InParanoid:Q55BM8 OMA:RKNINRD ProtClustDB:CLSZ2495641
Uniprot:Q55BM8
Length = 472
Score = 108 (43.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 34/125 (27%), Positives = 54/125 (43%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKT 106
P++ + CSY+ LCR C ++HP + L GD +C Y +
Sbjct: 265 PKKSKKERCSYW---PLCRNAEACIYHHPTTQCLLFPNCTY-GD--------KCLYIHPS 312
Query: 107 GTCKFGATCK-----FHHP-RDKAGIAGRVSLNVL----GYPLRPNEIECAYYLRTGQCK 156
CKFG C ++HP R A +A ++N + G+ + C +Y CK
Sbjct: 313 IPCKFGINCTNVDCVYNHPQRPTAPVATPPAMNEIPCRNGFACPNKKTGCGFYHPPPACK 372
Query: 157 FGSTC 161
FG++C
Sbjct: 373 FGTSC 377
Score = 55 (24.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 23/76 (30%), Positives = 30/76 (39%)
Query: 307 CQFYMKTGDCKFGAVCR------FHHPRERLLPV----PDCVLSPIGLPLRPGEPLCIFY 356
C FY CKFG C F H + L + P+C + + +P P C F
Sbjct: 362 CGFYHPPPACKFGTSCNMGKACPFGHGKPCLYGLNCVTPNCTFAHHSVE-QP-IPDCKFG 419
Query: 357 SRYGICKFGPSCKFDH 372
C P CKF+H
Sbjct: 420 KE---CT-NPKCKFNH 431
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 114 (45.2 bits), Expect = 0.00046, P = 0.00046
Identities = 43/164 (26%), Positives = 60/164 (36%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI-----KGDYPERVGQ--- 97
+ E+ G C ++++ C G C F H K + + KGD E + +
Sbjct: 6 MAEKSGAAVCEFFLKAA-CGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 64
Query: 98 ---PECQYYLKTGTCKFGATCKFHH--PRDKAGIAGRVSLNVLGY-PL----RPNEIECA 147
PEC +Y K G C C F H P K + PL + C
Sbjct: 65 TKMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICV 123
Query: 148 YYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPS 191
YL G C G +CKF HP+ M + P+ Q P S
Sbjct: 124 NYL-VGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQS 166
>UNIPROTKB|Q6S9E0 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9940 "Ovis aries"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0032680 "regulation of tumor
necrosis factor production" evidence=ISS] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISS] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISS] [GO:0071889 "14-3-3 protein binding" evidence=ISS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0006950 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0017091 GO:GO:0006402 GO:GO:0071889
GO:GO:0010494 GO:GO:0060213 GO:GO:0070935 GO:GO:0032680
HOVERGEN:HBG008483 CTD:7538 EMBL:AY462109 RefSeq:NP_001009765.1
UniGene:Oar.1075 ProteinModelPortal:Q6S9E0 SMR:Q6S9E0 GeneID:443283
Uniprot:Q6S9E0
Length = 325
Score = 116 (45.9 bits), Expect = 0.00053, P = 0.00053
Identities = 43/143 (30%), Positives = 65/143 (45%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + R +P E+ +YL+ G+C +GS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQPSR-------HPKYKTELCHKFYLQ-GRCPYGS 158
Query: 160 TCKF-HHPQ-----PNNMMVSLRGSPVYPTVQSP--TTPSQQSYAG-GITNWSRASFIPS 210
C F H+P P + V LR S + + S T+P S AG + +WS F PS
Sbjct: 159 RCHFIHNPSEDLAAPGHPHV-LRQSISFSGLPSGRRTSPPPASLAGPSVPSWS---FSPS 214
Query: 211 PRWQGPSSYAPMLLPQGMVSVPG 233
P P L P + PG
Sbjct: 215 SSPPPPPGDLP-LSPSAFSAAPG 236
>UNIPROTKB|Q8IXZ2 [details] [associations]
symbol:ZC3H3 "Zinc finger CCCH domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010793 "regulation of mRNA export from nucleus" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006378 GO:GO:0003676 eggNOG:COG5084 GO:GO:0016973
EMBL:AC067930 EMBL:AC105118 GO:GO:0010793 EMBL:BC034435
EMBL:BC038670 EMBL:D63484 IPI:IPI00384232 IPI:IPI00410013
RefSeq:NP_055932.2 UniGene:Hs.521915 ProteinModelPortal:Q8IXZ2
SMR:Q8IXZ2 IntAct:Q8IXZ2 STRING:Q8IXZ2 PhosphoSite:Q8IXZ2
DMDM:308153538 PaxDb:Q8IXZ2 PRIDE:Q8IXZ2 Ensembl:ENST00000262577
GeneID:23144 KEGG:hsa:23144 UCSC:uc003yyd.2 CTD:23144
GeneCards:GC08M144519 H-InvDB:HIX0022677 HGNC:HGNC:28972
HPA:HPA023658 neXtProt:NX_Q8IXZ2 PharmGKB:PA134933089
HOGENOM:HOG000133053 HOVERGEN:HBG055611 InParanoid:Q8IXZ2
OMA:TSLPGDK OrthoDB:EOG40ZQX1 PhylomeDB:Q8IXZ2 ChiTaRS:ZC3H3
GenomeRNAi:23144 NextBio:44434 Bgee:Q8IXZ2 CleanEx:HS_ZC3H3
Genevestigator:Q8IXZ2 GermOnline:ENSG00000014164 Uniprot:Q8IXZ2
Length = 948
Score = 122 (48.0 bits), Expect = 0.00056, P = 0.00056
Identities = 72/271 (26%), Positives = 99/271 (36%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVG------------QPECQY 102
C YY R G C G C + H P K+A+ T ++G + G P C Y
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPE-KVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSY 731
Query: 103 YLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVL-GY-PL-----RPNEIECAYYLRTGQC 155
+LK G C + C + H V + L GY PL + + + C + R G C
Sbjct: 732 FLK-GICS-NSNCPYSHVY--VSRKAEVCSDFLKGYCPLGAKCKKKHTLLCPDFARRGAC 787
Query: 156 KFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQG 215
G+ C+ H SP P T S+ S + G S + P Q
Sbjct: 788 PRGAQCQLLHRTQKRHSRRAATSPA-PGPSDATARSRVSASHGPRKPSASQ---RPTRQT 843
Query: 216 PSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPS-NSGSQ 274
PSS A L V+ P G S SSS+ +S +S + PS +
Sbjct: 844 PSSAA---LTAAAVAAPPH--CPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAAL 898
Query: 275 GTMSSFRSGSVPVGFYALQRESVFPERPGQP 305
S R +P F +LQ P QP
Sbjct: 899 AAACSNRLCKLP-SFISLQSS---PSPGAQP 925
>TAIR|locus:2013758 [details] [associations]
symbol:AT1G29560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003676
EMBL:AC068667 eggNOG:KOG1677 IPI:IPI00527997 RefSeq:NP_174249.2
UniGene:At.73942 ProteinModelPortal:B3H4U9 PRIDE:B3H4U9
EnsemblPlants:AT1G29560.1 GeneID:839833 KEGG:ath:AT1G29560
TAIR:At1g29560 HOGENOM:HOG000064587 OMA:WRDSESR PhylomeDB:B3H4U9
ProtClustDB:CLSN2682005 Genevestigator:B3H4U9 Uniprot:B3H4U9
Length = 572
Score = 119 (46.9 bits), Expect = 0.00062, P = 0.00062
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 38 NEAMESGSLPER-PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVG 96
+E E P R PGE +C + +R CR G +CR+NHP ++ + P R
Sbjct: 206 DERTERRQEPVRWPGE-EC-WCLR---CRNGGSCRYNHP---------TQLPQELPVRNR 251
Query: 97 QPECQYYLKTGTCKFGATCKFHHPRDK 123
C+Y+L+ G CKFG+ C F H RD+
Sbjct: 252 LQICRYFLR-GYCKFGSVCGFQHIRDR 277
>UNIPROTKB|P26651 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0050779 "RNA destabilization" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IMP;IDA] [GO:0006402
"mRNA catabolic process" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019957 "C-C chemokine binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0019901 "protein kinase binding"
evidence=IPI] [GO:0006950 "response to stress" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0071889
"14-3-3 protein binding" evidence=IDA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA] [GO:1900153
"positive regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA;TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0003727 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483
CTD:7538 KO:K15308 EMBL:M92843 EMBL:M92844 EMBL:M63625
EMBL:AK314042 EMBL:AY771351 EMBL:BC009693 IPI:IPI00000893
PIR:S34427 RefSeq:NP_003398.2 UniGene:Hs.534052
ProteinModelPortal:P26651 SMR:P26651 DIP:DIP-29845N IntAct:P26651
MINT:MINT-1171915 STRING:P26651 PhosphoSite:P26651 DMDM:136471
PRIDE:P26651 DNASU:7538 Ensembl:ENST00000248673 GeneID:7538
KEGG:hsa:7538 UCSC:uc002olh.1 GeneCards:GC19P039897 HGNC:HGNC:12862
HPA:HPA006009 MIM:190700 neXtProt:NX_P26651 PharmGKB:PA37451
InParanoid:P26651 OMA:RRLPIFN OrthoDB:EOG4S4PH4 PhylomeDB:P26651
ChiTaRS:ZFP36 GenomeRNAi:7538 NextBio:29497 Bgee:P26651
CleanEx:HS_ZFP36 Genevestigator:P26651 GermOnline:ENSG00000128016
Uniprot:P26651
Length = 326
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 45/150 (30%), Positives = 67/150 (44%)
Query: 92 PERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLR 151
P R C+ + ++G C++GA C+F H + A R +P E+ +YL+
Sbjct: 101 PSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANR-------HPKYKTELCHKFYLQ 153
Query: 152 TGQCKFGSTCKF-HHPQ-----PNNMMVSLRGSPVYPTVQSP--TTPSQQSYAGGITNWS 203
G+C +GS C F H+P P + V LR S + + S T+P AG + S
Sbjct: 154 -GRCPYGSRCHFIHNPSEDLAAPGHPPV-LRQSISFSGLPSGRRTSPPPPGLAG--PSLS 209
Query: 204 RASFIPSPRWQGPSSYAPMLLPQGMVSVPG 233
+SF PS P P L P + PG
Sbjct: 210 SSSFSPSSSPPPPGDL-P-LSPSAFSAAPG 237
>UNIPROTKB|D0VE66 [details] [associations]
symbol:LOC100623625 "Tristetraprolin" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:FP102918 EMBL:FP236263
EMBL:GU066778 EMBL:HM484335 EMBL:HM480487 RefSeq:NP_001161891.1
RefSeq:XP_003355955.1 UniGene:Ssc.28024 STRING:D0VE66
Ensembl:ENSSSCT00000011714 Ensembl:ENSSSCT00000026750
GeneID:100316849 GeneID:100623625 KEGG:ssc:100316849
KEGG:ssc:100623625 Uniprot:D0VE66
Length = 326
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 43/142 (30%), Positives = 64/142 (45%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 108 CRTFSESGRCRYGAKCQFAHGLGELRQASR-------HPKYKTELCHKFYLQ-GRCPYGS 159
Query: 160 TCKF-HHPQ-----PNNMMVSLRGSPVYPTVQSP--TTPSQQSYAGGITNWSRASFIPSP 211
C F H+P P + V LR S + + S T+P AG + S SF PS
Sbjct: 160 RCHFIHNPSEDLAAPGHPHV-LRQSISFSGLPSGRRTSPPPPGLAG--PSLSSCSFSPSS 216
Query: 212 RWQGPSSYAPMLLPQGMVSVPG 233
P P L P + PG
Sbjct: 217 SPPPPPGDLP-LSPSAFSAAPG 237
>RGD|620722 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS;IDA] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO;ISS] [GO:0006950 "response to stress"
evidence=IEA;ISO;ISS] [GO:0007243 "intracellular protein kinase
cascade" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA;ISO;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISO;ISS] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0019957 "C-C chemokine binding"
evidence=IEA;ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA;ISO;ISS] [GO:0035925 "mRNA 3'-UTR AU-rich
region binding" evidence=IEA;ISO] [GO:0043488 "regulation of mRNA
stability" evidence=ISO] [GO:0045638 "negative regulation of
myeloid cell differentiation" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA;ISO] [GO:0050779 "RNA destabilization"
evidence=IEA;ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO;ISS] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA;ISO;ISS] [GO:0071889 "14-3-3 protein
binding" evidence=IEA;ISO;ISS] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 RGD:620722 GO:GO:0005829
GO:GO:0005634 GO:GO:0045893 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0006402
GO:GO:0071889 GO:GO:0010494 GO:GO:0060213 eggNOG:COG5063
GO:GO:0000289 GO:GO:0045638 GO:GO:0070935 GO:GO:0032680
GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:X63369 EMBL:AB025017
EMBL:BC060308 IPI:IPI00192126 PIR:JC1255 RefSeq:NP_579824.2
UniGene:Rn.82737 ProteinModelPortal:P47973 SMR:P47973 STRING:P47973
PhosphoSite:P47973 PRIDE:P47973 GeneID:79426 KEGG:rno:79426
UCSC:RGD:620722 InParanoid:P47973 NextBio:614778
Genevestigator:P47973 GermOnline:ENSRNOG00000019673 Uniprot:P47973
Length = 320
Score = 114 (45.2 bits), Expect = 0.00086, P = 0.00086
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ Y ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQANR-------HPKYKTELCHKFYLQ-GRCPYGS 153
Query: 160 TCKF-HHP--------QPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPS 210
C F H+P QP+ + S+ S + P+ + T+P ++G + S SF PS
Sbjct: 154 RCHFIHNPTEDLALPGQPHVLRQSISFSGL-PSGRR-TSPPPPGFSG--PSLSSCSFSPS 209
Query: 211 PRWQGPSSYAPMLLPQGMVSVPG 233
P P L P + PG
Sbjct: 210 SSPPPPGDL-P-LSPSAFSAAPG 230
>UNIPROTKB|P47973 [details] [associations]
symbol:Zfp36 "Tristetraprolin" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0019957 "C-C chemokine binding" evidence=IEA]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 RGD:620722 GO:GO:0005829 GO:GO:0005634 GO:GO:0045893
GO:GO:0006950 GO:GO:0046872 GO:GO:0003677 GO:GO:0050728
GO:GO:0008270 GO:GO:0003729 GO:GO:0007243 GO:GO:0017091
GO:GO:0000122 GO:GO:0006402 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479
HOVERGEN:HBG008483 CTD:7538 KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4
EMBL:X63369 EMBL:AB025017 EMBL:BC060308 IPI:IPI00192126 PIR:JC1255
RefSeq:NP_579824.2 UniGene:Rn.82737 ProteinModelPortal:P47973
SMR:P47973 STRING:P47973 PhosphoSite:P47973 PRIDE:P47973
GeneID:79426 KEGG:rno:79426 UCSC:RGD:620722 InParanoid:P47973
NextBio:614778 Genevestigator:P47973 GermOnline:ENSRNOG00000019673
Uniprot:P47973
Length = 320
Score = 114 (45.2 bits), Expect = 0.00086, P = 0.00086
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ Y ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQANR-------HPKYKTELCHKFYLQ-GRCPYGS 153
Query: 160 TCKF-HHP--------QPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPS 210
C F H+P QP+ + S+ S + P+ + T+P ++G + S SF PS
Sbjct: 154 RCHFIHNPTEDLALPGQPHVLRQSISFSGL-PSGRR-TSPPPPGFSG--PSLSSCSFSPS 209
Query: 211 PRWQGPSSYAPMLLPQGMVSVPG 233
P P L P + PG
Sbjct: 210 SSPPPPGDL-P-LSPSAFSAAPG 230
>DICTYBASE|DDB_G0285973 [details] [associations]
symbol:DDB_G0285973 "Butyrate response factor 2"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0285973 GO:GO:0008270 GO:GO:0003676
EMBL:AAFI02000082 eggNOG:COG5063 RefSeq:XP_637949.2
ProteinModelPortal:Q54MG5 SMR:Q54MG5 EnsemblProtists:DDB0218764
GeneID:8625376 KEGG:ddi:DDB_G0285973 InParanoid:Q54MG5 OMA:WSSDEAS
Uniprot:Q54MG5
Length = 437
Score = 116 (45.9 bits), Expect = 0.00088, P = 0.00088
Identities = 46/191 (24%), Positives = 79/191 (41%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + +TG C++G C+F H RD+ +V+ +P E C + G C +GS
Sbjct: 201 CRSFQETGVCRYGLKCQFAHGRDELR-------SVMRHPKYKTET-CKTFYSIGSCPYGS 252
Query: 160 TCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGIT---NWSRASFIPSPRWQGP 216
C+F H + + + L S + + S + P+Q S T N + ASF
Sbjct: 253 RCRFIHTRDPELPIHLM-SQLSTSSGSISPPNQTSNNNNNTTNGNNTPASFATEVLLS-- 309
Query: 217 SSYAPMLLPQG---MVSVP-----GWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEP 268
+ P ++ Q + P Q S N ++ S N + +S +++P
Sbjct: 310 KTIVPQMIRQHSSPQLQTPLHILQQQKELQQQQKDKESQLNKEKESNNKESSSSSIKSQP 369
Query: 269 SNSGSQGTMSS 279
S +Q SS
Sbjct: 370 STPQTQSQSSS 380
>TAIR|locus:2827287 [details] [associations]
symbol:NERD "Needed for RDR2-independent DNA methylation"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0042393
"histone binding" evidence=IDA] InterPro:IPR000571
InterPro:IPR001965 InterPro:IPR003121 InterPro:IPR003169
InterPro:IPR004343 InterPro:IPR018144 InterPro:IPR019787
Pfam:PF00642 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126 PROSITE:PS50016
PROSITE:PS50103 PROSITE:PS50829 PROSITE:PS51360 SMART:SM00249
SMART:SM00444 SMART:SM00719 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006352 GO:GO:0016570 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 eggNOG:NOG12793
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0031047 GO:GO:0042393
SUPFAM:SSF55277 EMBL:AC007047 EMBL:DQ446507 IPI:IPI00546025
PIR:F84540 PIR:G84540 RefSeq:NP_179241.4 UniGene:At.40269
HSSP:Q9FT92 PaxDb:Q9SIV5 PRIDE:Q9SIV5 GeneID:816147
KEGG:ath:AT2G16485 TAIR:At2g16485 HOGENOM:HOG000215989
InParanoid:Q9SIV5 ArrayExpress:Q9SIV5 Genevestigator:Q9SIV5
GO:GO:0032776 GO:GO:0010964 SUPFAM:SSF47592 Uniprot:Q9SIV5
Length = 1773
Score = 123 (48.4 bits), Expect = 0.00089, P = 0.00089
Identities = 48/169 (28%), Positives = 73/169 (43%)
Query: 166 PQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLP 225
P + V+ GS V TVQ T + + ++A P+P W GP+ + P
Sbjct: 1617 PAQTGVNVNWGGSSVPSTVQGIT---HSGWVAPVQGQTQA--YPNPGW-GPTGH-PQSQS 1669
Query: 226 QGMVSVPGWNTYSGQLGSVSSSENLQQTSGNS-QIYGASRQTEPSNSGSQGTMSSF---- 280
Q V T SG + + +Q SGNS Q +G QT + GS G + +
Sbjct: 1670 QSQVQAQAGTTGSGWM---QPGQGIQ--SGNSNQNWGTQNQTAIPSGGSGGNQAGYWGNQ 1724
Query: 281 -RSGSVPVGFYALQRESVFPER--PGQPECQFYMKTGDCKFGAVCRFHH 326
+S + G Y R+S + GQ C+F+ + G C+ GA C + H
Sbjct: 1725 QQSQNGDSG-YGWNRQSGGQQNNFKGQRVCKFFRENGHCRKGASCNYLH 1772
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 439 0.00089 118 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 606 (64 KB)
Total size of DFA: 279 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.46u 0.13s 39.59t Elapsed: 00:00:02
Total cpu time: 39.47u 0.13s 39.60t Elapsed: 00:00:02
Start: Sat May 11 00:18:04 2013 End: Sat May 11 00:18:06 2013