BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047248
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/418 (78%), Positives = 368/418 (88%), Gaps = 7/418 (1%)
Query: 24 SLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA 83
++ Q+A+WQMNLR++E MESG PE PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA
Sbjct: 5 TIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA 64
Query: 84 TARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNE 143
TAR+KG++PER+GQPECQYYLKTGTCKFGATC+FHHP+DKAG+AGRV+LN+LGYPLRPNE
Sbjct: 65 TARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNE 124
Query: 144 IECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWS 203
E AYYLRTGQCKFG+TCKFHHPQP+NM++S+RGS VYPTVQSPTTP QQSYA GITNWS
Sbjct: 125 SERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNWS 184
Query: 204 RASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGAS 263
+S++PSPRWQGPSSYAP++LPQG+VSVPGW+TY GQ+G SE+ QQT N Q YG S
Sbjct: 185 SSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMG----SESPQQTMRNDQTYGTS 240
Query: 264 RQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCR 323
Q E N+G QG S +RSGSVPVGFYALQR+++FPERP QPECQFYMKTGDCKFGAVCR
Sbjct: 241 HQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCR 300
Query: 324 FHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSA 383
FHHPRER +P PDCVLSPIGLPLRPGEPLC+FYSRYGICKFGPSCKFDHPMGIFTYN+ A
Sbjct: 301 FHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNV-A 359
Query: 384 SSSADAPVRRFLGSSSATGALNLSSEGLVEAGSG--RRLSLPETRQMSSGDDEIDTEG 439
S AD P RR LGSSS T AL+LSSEGLVE+G+ RRLSL ETR + GDD ID EG
Sbjct: 360 SPLADTPGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPPGDDNIDDEG 417
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/427 (63%), Positives = 333/427 (77%), Gaps = 14/427 (3%)
Query: 16 TEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
T GP + ++++A+WQMNL EAME+G PER GEPDCSYY+RTGLCRFG TC+FNHP
Sbjct: 28 TIGPHV---VDEEAMWQMNL--GEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHP 82
Query: 76 PNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVL 135
+RK+A+A AR+KG+YP+R+GQPECQYYLKTGTCKFGATCKFHHPR+KA IA RV LN L
Sbjct: 83 ADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNAL 142
Query: 136 GYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSY 195
GYPLRPNE ECAYYLRTGQCKFGSTCKFHHPQP+N MV++RGS VY QS T+PSQ +Y
Sbjct: 143 GYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGS-VYSPGQSVTSPSQHTY 201
Query: 196 AGGITNW--SR-ASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQ 252
G +TNW SR ASFI SPRW G SSYA +++P G+V VPGWN Y+ Q+GS SSS++ Q+
Sbjct: 202 PGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGS-SSSDDQQR 260
Query: 253 TSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMK 312
T+G +Q Y SR +E N G QG SS+++GSVP+G Y +QRES+FPERP QPECQFYMK
Sbjct: 261 TAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMK 320
Query: 313 TGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDH 372
TGDCKFGAVC+FHHP+ER++P P+C LS +GLPLRPGEP+C FYSRYGICKFGP+CKFDH
Sbjct: 321 TGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDH 380
Query: 373 PMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLPETRQMSSGD 432
PMG Y L+ S + D RR L A ++ + +G RR++ +++Q+ SG+
Sbjct: 381 PMGTVMYGLATSPTGDVSARRMLAPVPAHSEVSPDN----VSGRSRRITHSDSQQIPSGE 436
Query: 433 DEIDTEG 439
+ E
Sbjct: 437 RGTEREA 443
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/432 (61%), Positives = 320/432 (74%), Gaps = 14/432 (3%)
Query: 13 AAVTEGPS-LSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCR 71
AA GP L + ++A+WQM L E+MES PER GEPDCSYY+RTGLCRFG TC+
Sbjct: 29 AAPAIGPHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCK 88
Query: 72 FNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVS 131
FNHPPNRKLA+A AR+ G+YP RVGQPECQYYLKTGTCKFGATCKFHHPR+KA +A RV
Sbjct: 89 FNHPPNRKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQ 148
Query: 132 LNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPS 191
LNVLGYP+RPNE ECAYYLRTGQCKF STCKFHHPQP+N MV++R S +Y QS T+P
Sbjct: 149 LNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNS-MYSPGQSATSPG 207
Query: 192 QQSYAGGITNWS---RASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSE 248
Q +Y G +TNW+ ASFI SPRW G S YA +++PQG+V VPGWN Y+ Q+GS SS +
Sbjct: 208 QHTYPGAVTNWTLSRSASFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGS-SSPD 266
Query: 249 NLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQ 308
+ Q+T +Q YG SRQ+E G G S++ GSVPVG Y +Q E++FPERP QPECQ
Sbjct: 267 DQQRTPVTTQYYG-SRQSETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQ 325
Query: 309 FYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSC 368
FYMKTGDCKFGAVC+FHHP+ERL+P P+C L+ +GLPLRPGEP+C FYSRYGICKFGP+C
Sbjct: 326 FYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNC 385
Query: 369 KFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLP--ETR 426
KFDHPMG Y + S D + S S G + L++ GSGR +P +++
Sbjct: 386 KFDHPMGTLMYGSATSPRGDVSSMHYQLSPSP-GHPGI----LLDGGSGRSHRVPQSDSQ 440
Query: 427 QMSSGDDEIDTE 438
Q+ SGD + E
Sbjct: 441 QIPSGDGNAERE 452
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/400 (64%), Positives = 314/400 (78%), Gaps = 15/400 (3%)
Query: 13 AAVTEGPSLSPS-LNQDALWQ-MNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATC 70
AA T+ PS P+ L + +WQ M + + AM+ G PER GEPDC+YY+RTGLCRFG +C
Sbjct: 42 AAATDEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSC 101
Query: 71 RFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRV 130
RFNHP +R LAIA+AR+KG+YPER+GQPECQYYLKTGTCKFG TCKFHHPR+KAGIAGRV
Sbjct: 102 RFNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRV 161
Query: 131 SLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTP 190
LN LGYPLRP+E ECAYYL+TGQCK+G+TCKFHHP+ N M S RGSP+YP+V S T
Sbjct: 162 QLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSAT- 220
Query: 191 SQQSYAGGITNWS--RASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSE 248
+ Y G + +W+ R SFIPSPRWQ PS+YAPM++PQG+V VP WN+Y+GQ+ VSSSE
Sbjct: 221 AGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSE 280
Query: 249 NLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQ 308
+ Q+ G Q YG S+Q + +++G+QG +S +RS S PV YALQRE+VFPERP QPECQ
Sbjct: 281 SRLQSPGAQQTYGTSQQVD-ASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQ 339
Query: 309 FYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSC 368
+YMKTGDCKFGAVC+FHHPR R +P PDCVLSP+GLPLRPGE LC FYSRYGICKFG +C
Sbjct: 340 YYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANC 399
Query: 369 KFDH-----PMGIFTYNLSASSSADAP-VRRFLGSSSATG 402
KFDH PMG++ Y S+S + P VRR L S SA+
Sbjct: 400 KFDHPTMAPPMGVYAY---GSASTNVPMVRRLLQSPSASA 436
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/445 (61%), Positives = 322/445 (72%), Gaps = 63/445 (14%)
Query: 1 MQFEAGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIR 60
M F AG+ +S SLSP +NQDA+WQMNL ++E ME+GS PERPGEPDCSYYIR
Sbjct: 1 MDFNAGVPMS---------SLSPLMNQDAMWQMNLSSDETMETGSYPERPGEPDCSYYIR 51
Query: 61 TGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHP 120
TGLCRFG+TCRFNHP +R+L IATAR++G+YPER+GQPEC+YYLKTGTCKFG TCKFHHP
Sbjct: 52 TGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHP 111
Query: 121 RDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHH--PQPNNMMVSLRGS 178
R+KAGIAGRVSLN+LGYPLR NE++CAY+LRTG CKFG TCKF+H PQP NMMV G
Sbjct: 112 RNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQ 171
Query: 179 PVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYS 238
YP WSRASFI SPRWQ PSSYA +++PQG+V V GWN YS
Sbjct: 172 QSYP-------------------WSRASFIASPRWQDPSSYASLIMPQGVVPVQGWNPYS 212
Query: 239 GQLGSVSSSENLQQTSGNSQIYGASRQTE--PSNSGSQGTMSSFRSG-SVPV-GFYALQR 294
GQLGSVS S +GN Q Y +Q E S S SQG+ S + G SVP+ G+YAL R
Sbjct: 213 GQLGSVSPS-----GTGNDQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPR 267
Query: 295 ESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCI 354
E+VFPERPGQPECQFYMKTGDCKFG VC+FHHPR+R P PDC+LS IGLPLRPGEPLC+
Sbjct: 268 ENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCV 327
Query: 355 FYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEA 414
FY+RYGICKFGPSCKFDHPM +FTY+ +AS + + +VE
Sbjct: 328 FYTRYGICKFGPSCKFDHPMRVFTYDNTASETDE----------------------VVET 365
Query: 415 GSG--RRLSLPETRQMSSGDDEIDT 437
+G RRLS+ ETRQ ++ DT
Sbjct: 366 STGKSRRLSVSETRQAATTSSGKDT 390
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 249/430 (57%), Positives = 293/430 (68%), Gaps = 72/430 (16%)
Query: 17 EGPSLSPSLNQDALWQMNLRTNEAM-ESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
E LSP LNQ+A+WQMNL +++ M GS PER GEPDC+YYIRTGLCRFG+TCRFNHP
Sbjct: 9 ESTFLSPLLNQNAMWQMNLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
Query: 76 PNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVL 135
+RKL IATARIKG+YPER+GQPEC++YLKTGTCKFG TCKFHHPR+KAGI G VS+NVL
Sbjct: 69 HDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVL 128
Query: 136 GYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQP--NNMMVSLRGSPVYPTVQSPTTPSQQ 193
YPLRPNE +C+Y+LR GQCKFG TCKF+HPQ N+MVS+RGSPVY +QS T Q
Sbjct: 129 SYPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLT--GQP 186
Query: 194 SYAGGITNWSRASFIPS-PRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQ 252
SY+ WSR SF+ + PR Q PS +A
Sbjct: 187 SYS-----WSRTSFVANPPRLQDPSGFA-------------------------------- 209
Query: 253 TSGNSQIYGASRQTEPSNSGSQGTM--SSFRSG-SVPVGFYALQRESVFPERPGQPECQF 309
SGSQG + S F SG SVP+GFYAL RE+VFPERPGQPECQF
Sbjct: 210 ------------------SGSQGGLFSSGFHSGNSVPLGFYALPRENVFPERPGQPECQF 251
Query: 310 YMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCK 369
YMKTGDCKFG VC+FHHPR+R P PDCVLS +GLPLRPGEPLC+FYSRYGICKFGPSCK
Sbjct: 252 YMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCK 311
Query: 370 FDHPMGIFTYNLSASSSADAPVRRFLGSSSATGAL-NLSSEGLVEAGSGRRLSLPETRQM 428
FDHPM +FTYN ++++ +P ++ T L NL VEA + SLPET
Sbjct: 312 FDHPMRVFTYN--NNTASPSPSSSLHQETAITTELRNLLVSSSVEA---KPTSLPET--T 364
Query: 429 SSGDDEIDTE 438
S+ D +D +
Sbjct: 365 SAKDTIVDAQ 374
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/378 (51%), Positives = 246/378 (65%), Gaps = 26/378 (6%)
Query: 27 QDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAR 86
Q+++W++ L ++ S PERPG PDC+YY+RTG+C +G CR+NHP +R AT R
Sbjct: 29 QESMWRLGLGSD------SYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVR 82
Query: 87 IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIEC 146
G YPER G+P CQ+YLKTGTCKFGA+CKFHHP++ G V LN+ GYP+R + EC
Sbjct: 83 ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNEC 142
Query: 147 AYYLRTGQCKFGSTCKFHHPQPNNMMV---SLRGSPVYPTVQSPTTPSQQSYAGGITNWS 203
+YYL+TGQCKFG TCKFHHPQP V YP+VQS P Q Y G ++
Sbjct: 143 SYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQS-LMPDQ--YGGPSSSLR 199
Query: 204 RA-SFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGA 262
A + +P QG +Y PMLL G+V +PGW+ YS + S + S Q G + +YG
Sbjct: 200 VARTLLPGSYMQG--AYGPMLLTPGVVPIPGWSPYSAPV-SPALSPGAQHAVGATSLYGV 256
Query: 263 SR--QTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGA 320
++ T PS G ++SS P G +Q+E FPERPG+PECQ+Y+KTGDCKFG
Sbjct: 257 TQLTSTTPSLPGVYPSLSS------PTG--VIQKEQAFPERPGEPECQYYLKTGDCKFGT 308
Query: 321 VCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYN 380
C+FHHPR+R+ P +CVLSPIGLPLRPG C FY + G CKFG +CKFDHPMG YN
Sbjct: 309 SCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYN 368
Query: 381 LSASSSADAPVRRFLGSS 398
SASS ADAPV + SS
Sbjct: 369 PSASSLADAPVAPYPVSS 386
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
thaliana GN=At5g18550 PE=2 SV=1
Length = 465
Score = 312 bits (799), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 162/339 (47%), Positives = 212/339 (62%), Gaps = 26/339 (7%)
Query: 45 SLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIK-GDYPERVGQPECQYY 103
+ PERP EPDC YY+RTG+C +G+ CRFNHP NR + R + G++PER+GQP CQ++
Sbjct: 47 TFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHF 106
Query: 104 LKTGTCKFGATCKFHHPRDKAG--IAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTC 161
++TGTCKFGA+CK+HHPR G VSLN +G+PLRP E EC+Y++RTGQCKFGSTC
Sbjct: 107 MRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTC 166
Query: 162 KFHHPQPNNMMV-------SLRGSP-VYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRW 213
++HHP P + L P +YP++QS T PS Q Y G+ +R +P
Sbjct: 167 RYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSSQQY--GVV-LARPQLLPGSYV 223
Query: 214 QGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGS 273
Q P Y M+LP GMV GWN Y + S S Q + G S +YG + +
Sbjct: 224 QSPYGYGQMVLPPGMVPYSGWNPYQASV-SAMPSPGTQPSMGTSSVYGITPLSP------ 276
Query: 274 QGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLP 333
+ +++SG G +E FP+RP QPECQ++M+TGDCKFG CRFHHP E P
Sbjct: 277 --SAPAYQSGPSSTG--VSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASP 332
Query: 334 VPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDH 372
LS IGLPLRPG C ++++GICKFGP+CKFDH
Sbjct: 333 EAS-TLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 311 bits (798), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 170/380 (44%), Positives = 228/380 (60%), Gaps = 23/380 (6%)
Query: 27 QDALWQMNLRTN-----EAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLA 81
++++W+M L EA+ +G LPERPGE DC YY+RTG C +G CR+NHP +R A
Sbjct: 24 EESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA 83
Query: 82 IA-----TARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLG 136
+YPER GQP C+YY+K GTCKFG+ CK+ HPR+ G V LN G
Sbjct: 84 AVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE--GSVQAVMLNSSG 141
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYA 196
YPLR E +C YY++TG CKFGSTCKFHHP+ + + +YP VQ S Y
Sbjct: 142 YPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPN---MYPPVQPQPISSSHPYQ 198
Query: 197 GGITNWS--RASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTS 254
+ W R +P G SY PM+LP +V + GWN Y + V+S+ QT
Sbjct: 199 H-LAGWQMGRPPVLPGSFLSG--SYPPMMLPSTVVPMQGWNPYISPVNQVASAGG-HQTV 254
Query: 255 GNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTG 314
YG S Q PS + + G+ + S S + + ++E FP RPGQPECQ+Y+KTG
Sbjct: 255 QAGPFYGLSHQG-PSAAVTYGSQYAPLSSST-MPSSSSKQEPAFPARPGQPECQYYLKTG 312
Query: 315 DCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPM 374
CKFG+ C++HHP+ P +C+LSP+GLPLRPG C +Y+++G CKFGP+CKFDHPM
Sbjct: 313 SCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPM 372
Query: 375 GIFTYNLSASSSADAPVRRF 394
G +Y+ SASS D P+ +
Sbjct: 373 GTLSYSPSASSITDLPIAPY 392
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 297 bits (761), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 163/371 (43%), Positives = 216/371 (58%), Gaps = 13/371 (3%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI----ATARIKGDYPERVGQPECQ 101
LPERPGE DC YY+RTG C FG CR+NHP +R A DYPER GQP C+
Sbjct: 56 LPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICE 115
Query: 102 YYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTC 161
YY+KTGTCKFG CK+HHP+ + V LN G+P+R E EC+YY++TGQCKFG+TC
Sbjct: 116 YYMKTGTCKFGTNCKYHHPKQDGAVL-PVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTC 174
Query: 162 KFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSSYAP 221
KFHHP+ + ++ +YP +QSP+ S YA + NW P P SY P
Sbjct: 175 KFHHPEFGGVPMTPG---IYPPLQSPSIASPHPYAS-LANWQMGRPPVVPGSYIPGSYTP 230
Query: 222 MLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQGTMSSFR 281
M+L GM+ + GW+ Y + V S QQ +YG S G +
Sbjct: 231 MMLSSGMIPLQGWSPYPASVNPVVSG-GAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYA 289
Query: 282 SGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSP 341
S + Q+E FPERPGQP+CQ+YM+TGDCKFGA C++HHPRE P +++
Sbjct: 290 SSTGQSS--NNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNS 347
Query: 342 IGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRF-LGSSSA 400
+ LPLRPG C +Y++ G C++G +CK+DHPMG Y+ SA +D P+ + +G S A
Sbjct: 348 LCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIA 407
Query: 401 TGALNLSSEGL 411
T A + S L
Sbjct: 408 TLAPSSPSPDL 418
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 37 TNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGD---YPE 93
+N E G PERPG+PDC YY+RTG C+FGATC+++HP R+L+ + + P
Sbjct: 296 SNNQQEHG-FPERPGQPDCQYYMRTGDCKFGATCKYHHP--RELSAPKSGYMVNSLCLPL 352
Query: 94 RVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIA 127
R G C YY + G C++G CK+ HP G +
Sbjct: 353 RPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYS 386
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
+ + P R GE +CSYY++TG C+FG TC+F+HP
Sbjct: 145 LNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHP 179
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 170/360 (47%), Positives = 218/360 (60%), Gaps = 31/360 (8%)
Query: 30 LWQMNLRTNEAMESG--SLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI 87
+W++ L G S PERP EPDC YY+RTG+C +G+ CRFNHP +R I R
Sbjct: 33 MWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRG 92
Query: 88 K-GDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAG--IAGRVSLNVLGYPLRPNEI 144
+ G PER+G P CQ++++TGTCKFGA+CK+HHPR G VSL+ LGYPLRP E
Sbjct: 93 EAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEK 152
Query: 145 ECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSP------------VYPTVQSPTTPSQ 192
EC+YYLRTGQCKFG TC+F+HP P + + +YPT+QS + PS
Sbjct: 153 ECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQSIPSS 212
Query: 193 QSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQ 252
Q Y +T R SF+ Q P PM+LP GMV GWN Y L S S Q
Sbjct: 213 QQYGLVLT---RPSFLTGSYLQSPYG-PPMVLPPGMVPYSGWNPYQASL-SAMPSPGTQP 267
Query: 253 TSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMK 312
+ G+S IYG + PS + GT S S + + +E FP+RP QPECQ++M+
Sbjct: 268 SIGSSSIYGLT-PLSPSATAYTGTYQSVPSSN------STSKE--FPQRPDQPECQYFMR 318
Query: 313 TGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDH 372
TGDCKFG+ CR+HHP + + P VLS IGLPLRPG C ++++GICKFGP+CKFDH
Sbjct: 319 TGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
thaliana GN=At1g04990 PE=2 SV=1
Length = 404
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 193/350 (55%), Gaps = 42/350 (12%)
Query: 27 QDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAR 86
+DA +M + E P+RPGE DC +Y+RTGLC +G++CR+NHP L A
Sbjct: 25 EDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHP--THLPQDVAY 82
Query: 87 IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIEC 146
K + PER+GQP+C+Y+LKTG CK+G TCK+HHP+D+ G A V NV+G P+R E C
Sbjct: 83 YKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNG-AQPVMFNVIGLPMRLGEKPC 141
Query: 147 AYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRAS 206
YYLRTG C+FG CKFHHPQP+N + G +P + YA G+T S
Sbjct: 142 PYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPA-------ADLRYASGLTMMSTYG 194
Query: 207 FIPSPRWQGPSSYAPMLLP--QGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASR 264
+P P Q P SY P+L+ QG + GW Y S+ + +N
Sbjct: 195 TLPRP--QVPQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKN--------------- 237
Query: 265 QTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRF 324
+P SGS +M+ A+ E QPEC+F+M TG CK+G C++
Sbjct: 238 --QPYYSGSSASMA-----------MAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKY 284
Query: 325 HHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPM 374
HP R+ P +++P LP RPG+P C + YG CKFGP+CKFDHPM
Sbjct: 285 SHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPM 334
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/339 (43%), Positives = 199/339 (58%), Gaps = 42/339 (12%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA---TARIKGDYPERVGQPECQYY 103
P RPG DCS+Y+RTG C+FG++C+FNHP RK IA R K D ++G +C+YY
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYY 167
Query: 104 LKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKF 163
+TG CK+G TC+F+H K+G+A LN LG PLRP E+EC YY+R G CK+G+ CKF
Sbjct: 168 FRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKF 227
Query: 164 HHPQPNNM----MVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRW-QGPSS 218
+HP P + S RG+ V T + ++ T+WS SPR G S
Sbjct: 228 NHPDPTTIGGTDSPSFRGNN---GVSIGTFSPKATFQASSTSWS------SPRHVNGTSP 278
Query: 219 YAPMLLPQ--GMVSV-PGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQG 275
+ P++L Q G+ S P WN Y SV SSE ++ S +NS ++
Sbjct: 279 FIPVMLSQTHGVTSQNPEWNGYQA---SVYSSER--------GVFSPSTTYLMNNSSAET 327
Query: 276 TM--SSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLP 333
+M S +R + + E FPERP QPEC +YMKTGDCKF C++HHP+ RL
Sbjct: 328 SMLLSQYR--------HQMPAEE-FPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPK 378
Query: 334 VPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDH 372
+P L+ GLPLRP + +C +YSRYGICKFGP+C+FDH
Sbjct: 379 LPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 60/134 (44%), Gaps = 48/134 (35%)
Query: 288 GFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVP------------ 335
G+ + E+V+P RPG +C FYM+TG CKFG+ C+F+HP R +
Sbjct: 97 GWSENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDG 156
Query: 336 ------DCV------------------------------LSPIGLPLRPGEPLCIFYSRY 359
DC L+ +GLPLRPGE C +Y R
Sbjct: 157 GKLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRN 216
Query: 360 GICKFGPSCKFDHP 373
G CK+G CKF+HP
Sbjct: 217 GSCKYGAECKFNHP 230
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNR--KLAIATARIKGDYPERVGQP 98
M + PERP +P+CSYY++TG C+F C+++HP NR KL KG P R Q
Sbjct: 338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKG-LPLRPDQN 396
Query: 99 ECQYYLKTGTCKFGATCKFHH 119
C YY + G CKFG C+F H
Sbjct: 397 ICTYYSRYGICKFGPACRFDH 417
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 125 GIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVS 174
G + S NV YP+RP +C++Y+RTG CKFGS+CKF+HP ++
Sbjct: 97 GWSENESENV--YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIA 144
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
LP RPGE +C YY+R G C++GA C+FNHP
Sbjct: 201 LPLRPGEVECPYYMRNGSCKYGAECKFNHP 230
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 40 AMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNH 74
A+ LP RP + C+YY R G+C+FG CRF+H
Sbjct: 383 ALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 196/368 (53%), Gaps = 53/368 (14%)
Query: 22 SPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLA 81
SP +D +M + + +S P+RPGE DC +++RTG C +G +CR+NHP L
Sbjct: 17 SPDKIEDTFRRMKVNEDNMEQSSPYPDRPGERDCQFFLRTGQCGYGNSCRYNHP-LTNLP 75
Query: 82 IATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRP 141
+ PERVGQP+C+ TG CK+G TCK+HHP+D+ G AG V NVLG P+R
Sbjct: 76 QGIIYYRDQLPERVGQPDCE----TGACKYGPTCKYHHPKDRNG-AGPVLFNVLGLPMRQ 130
Query: 142 NEIECAYYLRTGQCKFGSTCKFHHPQPNNMMV---SLRGSPVYPTVQSPTTPSQQSYAGG 198
E C YY++TG C+FG CKFHHP P++ S +P+V P YA G
Sbjct: 131 GEKPCPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMSSFPSVGFP-------YASG 183
Query: 199 ITNWSR--ASFIPSPRWQGPSS--YAP-MLLP-QGMVSVPGWNTYSGQLGSVSSSENLQQ 252
+T S A++ PR Q P S Y P M+ P QG++ GW TY
Sbjct: 184 MTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATY--------------- 228
Query: 253 TSGNSQIYGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMK 312
+ ++ IY Q + S+S S + S F ER EC+F+M
Sbjct: 229 MTASNPIYNMKTQLDSSSSASVAVTVTSHHHS-------------FSERA---ECRFFMN 272
Query: 313 TGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDH 372
TG CK+G C++ HP+ERLL P +L+PI LP RPG+P C + YG CKFG +CKFDH
Sbjct: 273 TGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDH 332
Query: 373 PMGIFTYN 380
M + YN
Sbjct: 333 SMLLNPYN 340
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 187/357 (52%), Gaps = 48/357 (13%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQP---ECQYY 103
P RP DCS+Y+RTG C++G++C+FNHP RKL I R++ + E V P EC+YY
Sbjct: 99 PVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVR-ERDEDVENPKLMECKYY 157
Query: 104 LKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKF 163
+TG CK+G +C+F H ++ A LN LG P+RP E EC +Y+R G CKFGS CKF
Sbjct: 158 FRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKF 217
Query: 164 HHPQPNNMMVSLRGSPVY---------PTVQSPTTPSQQSYAGGITNWSRASFIPS--PR 212
+HP P + SP+Y P S + + S + A FIPS P
Sbjct: 218 NHPDP--TAIGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPH 275
Query: 213 WQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSG 272
+G + PQ WN Y Q S E + Q+ + +T S S
Sbjct: 276 SRG-------VTPQAS----DWNGY--QASSAYPPERSPLAPSSYQVNNSLAETS-SFSQ 321
Query: 273 SQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLL 332
Q MS FPERP QPEC +Y+KTGDCKF C++HHP+ RL
Sbjct: 322 YQHQMSV----------------EEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLP 365
Query: 333 PVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADA 389
+ GLPLRP + +C YSRYGICKFGP+C+FDH + T++ S+S + +A
Sbjct: 366 KQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDHSIPP-TFSPSSSQTVEA 421
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 64/144 (44%), Gaps = 53/144 (36%)
Query: 297 VFPERPGQPECQFYMKTGDCKFGAVCRFHHP--------RERLLPVPDCVLSP------- 341
V+P RP +C FYM+TG CK+G+ C+F+HP RER+ + V +P
Sbjct: 97 VYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKY 156
Query: 342 --------------------------------IGLPLRPGEPLCIFYSRYGICKFGPSCK 369
+GLP+RPGE C FY R G CKFG CK
Sbjct: 157 YFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCK 216
Query: 370 FDHPMGIFTYNLSASSSADAPVRR 393
F+HP + +A D+P+ R
Sbjct: 217 FNHP------DPTAIGGVDSPLYR 234
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNR--KLAIATARIKGDYPERVGQP 98
M PERP +P+C+YY++TG C+F C+++HP NR K A + KG P R Q
Sbjct: 326 MSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKG-LPLRPDQS 384
Query: 99 ECQYYLKTGTCKFGATCKFHH 119
C +Y + G CKFG C+F H
Sbjct: 385 MCTHYSRYGICKFGPACRFDH 405
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 134 VLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMV 173
++ YP+RP+ +C++Y+RTG CK+GS+CKF+HP + +
Sbjct: 95 MMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQI 134
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
LP RPGE +C +Y+R G C+FG+ C+FNHP
Sbjct: 191 LPIRPGEKECPFYMRNGSCKFGSDCKFNHP 220
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 49/352 (13%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHP--------PNRKLAIATARIKGDYPERVGQP 98
P+R GE DC++Y++T C+FG +CRF+HP P+ K A +YPER G+P
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPN--EEYPERPGEP 229
Query: 99 ECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFG 158
+C YY+KT CK+G+ CKF+HPR++A ++ ++ P RP+E C +Y++TG+CKFG
Sbjct: 230 DCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSL---PERPSEPMCTFYMKTGKCKFG 286
Query: 159 STCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSPRWQGPSS 218
+CKFHHP+ +Q P++ + G+T+ A+ P +
Sbjct: 287 LSCKFHHPK---------------DIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALY 331
Query: 219 YAPMLLP--QGMVSVPGW-NTYSGQLGSVSSSENLQQTSGNSQIYGASRQTEPSNSGSQG 275
+ LP G V P + T S + G+ + ++T+ Q G + SN+ +
Sbjct: 332 HNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLN 391
Query: 276 ------TMSSFRSGSVP-VGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPR 328
S +++ + P +G + + +P+RPGQ EC +YMKTG+CKFG C+FHHP
Sbjct: 392 LGLVTPATSFYQTLTQPTLGVIS----ATYPQRPGQSECDYYMKTGECKFGERCKFHHPA 447
Query: 329 ERLLPV-------PDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHP 373
+RL + P+ LS G P R G C +Y + G CK+G +CKFDHP
Sbjct: 448 DRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 42/173 (24%)
Query: 43 SGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP---------------------PNRKLA 81
S LP R GE DC +Y++TG C++GATCR+NHP N L
Sbjct: 334 SKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLG 393
Query: 82 IAT--------------ARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIA 127
+ T I YP+R GQ EC YY+KTG CKFG CKFHHP D+
Sbjct: 394 LVTPATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAM 453
Query: 128 GR-------VSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMV 173
+ V L++ GYP R + C YY++TG CK+G+TCKF HP P +M
Sbjct: 454 TKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMA 506
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 64/203 (31%)
Query: 45 SLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARI----------------- 87
SLPERP EP C++Y++TG C+FG +C+F+HP + +L ++ I
Sbjct: 264 SLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPH 323
Query: 88 -----------KGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLN--- 133
KG P R G+ +C +YLKTG+CK+GATC+++HP A I +N
Sbjct: 324 VTFTPALYHNSKG-LPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSL 382
Query: 134 --------------------------VLG-----YPLRPNEIECAYYLRTGQCKFGSTCK 162
LG YP RP + EC YY++TG+CKFG CK
Sbjct: 383 VSSNTANLNLGLVTPATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCK 442
Query: 163 FHHPQPNNMMVSLRGSPVYPTVQ 185
FHHP + + + +P P V+
Sbjct: 443 FHHPA-DRLSAMTKQAPQQPNVK 464
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYS 357
+PERPG+P+C +Y+KT CK+G+ C+F+HPRE V + LP RP EP+C FY
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREE---AAVSVETQDSLPERPSEPMCTFYM 278
Query: 358 RYGICKFGPSCKFDHPMGI 376
+ G CKFG SCKF HP I
Sbjct: 279 KTGKCKFGLSCKFHHPKDI 297
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 5 AGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLC 64
AG++ S ++ T +L + +Q + + S + P+RPG+ +C YY++TG C
Sbjct: 376 AGVNYSLVSSNTANLNLGLVTPATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGEC 435
Query: 65 RFGATCRFNHPPNR-----KLAIATARIK---GDYPERVGQPECQYYLKTGTCKFGATCK 116
+FG C+F+HP +R K A +K YP R G C YY+KTGTCK+GATCK
Sbjct: 436 KFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCK 495
Query: 117 FHHP 120
F HP
Sbjct: 496 FDHP 499
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 297 VFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLP---VPDCVLSPI----GLPLRPG 349
++P+R G+ +C YM+T CKFG CRF HP +P +PD +P+ P RPG
Sbjct: 170 IYPQRAGEKDCTHYMQTRTCKFGESCRFDHP--IWVPEGGIPDWKEAPVVPNEEYPERPG 227
Query: 350 EPLCIFYSRYGICKFGPSCKFDHP 373
EP C +Y + CK+G CKF+HP
Sbjct: 228 EPDCPYYIKTQRCKYGSKCKFNHP 251
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 38 NEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPP 76
N + P R G +C YY++TG C++GATC+F+HPP
Sbjct: 462 NVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPP 500
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 345 PLRPGEPLCIFYSRYGICKFGPSCKFDHPMGI 376
P R GE C Y + CKFG SC+FDHP+ +
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWV 203
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 165/327 (50%), Gaps = 44/327 (13%)
Query: 78 RKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGI--AGRVSLNVL 135
++L +A + K E Q EC+YY G CKFG CK+ H K G A +V LN L
Sbjct: 221 KELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFL 280
Query: 136 GYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSY 195
G PLRP E EC YY+RTG CK+ + CKFHHP P+N+ P ++ + Q
Sbjct: 281 GLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKD------PQLEHENGDAPQQD 334
Query: 196 AGGITNWSRASFIPSPR----------WQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVS 245
G ++ AS P R PS A ML PQGM P WN Y
Sbjct: 335 VQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGY-------- 386
Query: 246 SSENLQQTSGNSQI-YGASRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQ 304
Q N G Q P+ + +++ +P G + E +PERPGQ
Sbjct: 387 -----HQVPLNPYYPPGVPFQHFPA---APINHPMYKAPEIP-GHQQVPSEE-YPERPGQ 436
Query: 305 PECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKF 364
PECQ ++K+G CKF C++HHPR + P LSP+GLP++P +P+C +Y RYG+CKF
Sbjct: 437 PECQHFVKSGFCKFRMKCKYHHPRSPVPPA--GALSPLGLPIKPDQPVCTYYGRYGVCKF 494
Query: 365 GPSCKFDHPMGIFTYNLSASSSADAPV 391
GP+C ++HP +N S +A P+
Sbjct: 495 GPACAYNHP-----FNFSPVPAAGPPL 516
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 90 DYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYY 149
+YPER GQPECQ+++K+G CKF CK+HHPR AG +L+ LG P++P++ C YY
Sbjct: 429 EYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAG--ALSPLGLPIKPDQPVCTYY 486
Query: 150 LRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPT 188
R G CKFG C ++HP N V G P+ P Q PT
Sbjct: 487 GRYGVCKFGPACAYNHPF-NFSPVPAAGPPLLP-AQYPT 523
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 121/280 (43%), Gaps = 53/280 (18%)
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYA 196
+P RP E +C YY++ G C+FG CKF+HP + S V + S +
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP------ARKKKSRV-------KGSNGGSGS 151
Query: 197 GGITNWSRASFIPSPRWQGPS----SYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQ 252
GG + S + P Q P SY P + P+ V G+ GS S+ EN ++
Sbjct: 152 GGSNSSSNKASSPDDEQQAPKEEYGSYVPDISPE--VDSLGF----ADKGSASNLENFKK 205
Query: 253 TSGNSQIYGASR-QTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYM 311
S +I + + EP + +R+ E Q EC++Y
Sbjct: 206 YS--YEIIDVKKGRVEPKE----------------LKVAKEKRKEFISEGSSQEECKYYS 247
Query: 312 KTGDCKFGAVCRFHHP--RERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCK 369
G CKFG C++ H +E L+ +GLPLRPGE C +Y R G CK+ +CK
Sbjct: 248 TPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCK 307
Query: 370 FDHPMGIFTYNLSASS------SADAPVRRFLGSSSATGA 403
F HP N+++ + DAP + GSSS A
Sbjct: 308 FHHPD---PSNVASKDPQLEHENGDAPQQDVQGSSSQPNA 344
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 25 LNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAT 84
+N + ++ + S PERPG+P+C +++++G C+F C+++H P + A
Sbjct: 409 INHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHH-PRSPVPPAG 467
Query: 85 ARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHP 120
A P + QP C YY + G CKFG C ++HP
Sbjct: 468 ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHP 503
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRK 79
P RPGEPDC+YY++ G CRFG C+FNHP +K
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKK 138
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIK---GDYPERVGQ 97
LP RPGE +C YY+RTG C++ C+F+HP +A +++ GD P++ Q
Sbjct: 282 LPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQ 336
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPRDK 123
+P R G+P+C YY+K G+C+FG CKF+HP K
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARK 137
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 40 AMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPN 77
A+ LP +P +P C+YY R G+C+FG C +NHP N
Sbjct: 468 ALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFN 505
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 185/386 (47%), Gaps = 58/386 (15%)
Query: 28 DALWQMNLRTNEAMESGSLP---ERPGEPDCSYYIRTGLCRFGATCRFNHP--------P 76
+AL+ N T SLP +RPGE DC++Y+ T C+FG +C+F+HP P
Sbjct: 81 EALYSSNTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIP 140
Query: 77 NRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLG 136
N K A ++ YPE+ G+P+C +++KTG CKFG+ CKF+HP++K + N
Sbjct: 141 NWKEQ--AANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKH 198
Query: 137 -------YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTT 189
P+RP+E C++Y +TG+CKF + CKF+HP+ + P+ Q+
Sbjct: 199 LIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEI----------PSSQN--E 246
Query: 190 PSQQSYAGGITNWSRASFIPSPRWQGPSSYAPMLLPQGMVSVPG-------WNTYSGQLG 242
P G T+ A+ S + Q P + A +G+ PG S + G
Sbjct: 247 PESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFG 306
Query: 243 SVSSSENLQQTSGN-----SQIYGASRQTEPSNSGSQGTMS-SFRSGSVPVGFYALQRES 296
S + + N Q + ++ NS + F + +PVG +
Sbjct: 307 STCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPV---- 362
Query: 297 VFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSP---------IGLPLR 347
+P+RPG C FYMKTG CKF C+FHHP +R P P P GLP R
Sbjct: 363 TYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRR 422
Query: 348 PGEPLCIFYSRYGICKFGPSCKFDHP 373
+C FY + G+CKFG CKFDHP
Sbjct: 423 EDAVVCAFYMKTGVCKFGMQCKFDHP 448
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 137/325 (42%), Gaps = 73/325 (22%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPR--DKAGIAG--RVSLNVL-GYPLRPNEIE 145
YP+R G+ +C +Y+ T TCKFG +CKF HP+ + GI + NV YP + E +
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQEGEPD 161
Query: 146 CAYYLRTGQCKFGSTCKFHHPQPN-NMMVSLRGSPVYPTVQSPTTPSQQS--YAGGITNW 202
C ++++TG+CKFGS CKF+HP+ N + S + + S P + S
Sbjct: 162 CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKT 221
Query: 203 SRASFIPSPRWQGPSSYAPMLLPQGMVSVPGWNTYSGQLGSVSSSENLQQTSGNSQIYGA 262
+ F ++ P + +P S + E+ G + I A
Sbjct: 222 GKCKFRAMCKFNHPKD----------IEIPS---------SQNEPESAVTVEGETDIGSA 262
Query: 263 SRQTEPSNSGSQGTMSSFRSGSVPVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVC 322
+ F S +P+ RPG+ +C FYMK G CKFG+ C
Sbjct: 263 ADSVSAKMQTPVAAAQEFNSKGLPM-------------RPGEVDCPFYMKMGSCKFGSTC 309
Query: 323 RFHHPR-----------ERLLPVPDCVL----------------------SPIGLPLRPG 349
RF+HP + +LP P+ +L P+ P RPG
Sbjct: 310 RFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPG 369
Query: 350 EPLCIFYSRYGICKFGPSCKFDHPM 374
+C FY + G CKF CKF HP+
Sbjct: 370 ATVCDFYMKTGFCKFADRCKFHHPI 394
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 88/193 (45%), Gaps = 43/193 (22%)
Query: 29 ALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHP------------- 75
A Q + + S LP RPGE DC +Y++ G C+FG+TCRFNHP
Sbjct: 268 AKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQ 327
Query: 76 -----PNRKLAIATARIKG----------------DYPERVGQPECQYYLKTGTCKFGAT 114
P L ++A YP+R G C +Y+KTG CKF
Sbjct: 328 TILPTPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADR 387
Query: 115 CKFHHPRDKAG---------IAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHH 165
CKFHHP D++ V L + G P R + + CA+Y++TG CKFG CKF H
Sbjct: 388 CKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDH 447
Query: 166 PQPNNMMVSLRGS 178
P P + + S
Sbjct: 448 PPPQEAIAKVSNS 460
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 291 ALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPD-------CVLSPIG 343
A E +PE+ G+P+C F+MKTG CKFG+ C+F+HP+E++ + +
Sbjct: 146 AANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSI 205
Query: 344 LPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGI 376
LP+RP EPLC FY++ G CKF CKF+HP I
Sbjct: 206 LPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDI 238
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKG 89
LP R C++Y++TG+C+FG C+F+HPP ++ AIA G
Sbjct: 419 LPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQE-AIAKVSNSG 461
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 345 PLRPGEPLCIFYSRYGICKFGPSCKFDHPMGI 376
P RPGE C FY CKFG SCKFDHP +
Sbjct: 103 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWV 134
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 81/144 (56%), Gaps = 22/144 (15%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGD-YPERVGQPECQYYLK 105
P RPGEPDCSYY++ G C+FG +C +NHP R A + + +P R G+P+C YY+K
Sbjct: 42 PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVK 101
Query: 106 TGTCKFGATCKFHHP---------------------RDKAGIAGRVSLNVLGYPLRPNEI 144
G+CKFG C+F+HP + +V LNVLG PLRP
Sbjct: 102 FGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGTG 161
Query: 145 ECAYYLRTGQCKFGSTCKFHHPQP 168
C+YY+ G CKFG+ CKF HP P
Sbjct: 162 LCSYYMNRGICKFGTNCKFDHPDP 185
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 54/97 (55%), Gaps = 21/97 (21%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLP---------------------VPD 336
FP RPG+P+C +Y+K G CKFG CRF+HP +P V
Sbjct: 87 FPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQ 146
Query: 337 CVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHP 373
L+ +GLPLRPG LC +Y GICKFG +CKFDHP
Sbjct: 147 VKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%)
Query: 80 LAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPL 139
+A T +++ +P R G+P+C YY+K G+CKFG +C ++HP + +P
Sbjct: 30 VAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPR 89
Query: 140 RPNEIECAYYLRTGQCKFGSTCKFHHP 166
RP E +C+YY++ G CKFG C+F+HP
Sbjct: 90 RPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 286 PVGFYALQRESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLP 345
PV + E P RPG+P+C +Y+K G CKFG C ++HP R D P
Sbjct: 29 PVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFP 88
Query: 346 LRPGEPLCIFYSRYGICKFGPSCKFDHP 373
RPGEP C +Y ++G CKFG +C+F+HP
Sbjct: 89 RRPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 126 IAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQP 168
+AG+ +P RP E +C+YY++ G CKFG +C ++HP P
Sbjct: 30 VAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDP 72
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHP 75
LP RPG CSYY+ G+C+FG C+F+HP
Sbjct: 154 LPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
subsp. japonica GN=Os06g0519400 PE=2 SV=1
Length = 279
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 79/147 (53%), Gaps = 24/147 (16%)
Query: 40 AMESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPE 99
A+E P RPG PDCSYY+ G C+FG C +NHP A K ++P+R G+ +
Sbjct: 70 AVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH----AGGCDKLEHPQRPGEHD 125
Query: 100 CQYYLKTGTCKFGATCKFHHPRDK--------------------AGIAGRVSLNVLGYPL 139
C +YL+ G CK+G C+F+HP D+ A V LN LG PL
Sbjct: 126 CLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPL 185
Query: 140 RPNEIECAYYLRTGQCKFGSTCKFHHP 166
RP C+YY+ G CKFGS CKFHHP
Sbjct: 186 RPGTGLCSYYMNRGICKFGSNCKFHHP 212
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 20/95 (21%)
Query: 299 PERPGQPECQFYMKTGDCKFGAVCRFHHPRERL------LPVPDC--------------V 338
P+RPG+ +C Y++ G CK+G CRF+HP +RL P C
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 339 LSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHP 373
L+ +GLPLRPG LC +Y GICKFG +CKF HP
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 21/100 (21%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNR------------------KLAIATARIK 88
P+RPGE DC +Y+R G C++G CRFNHPP+R + +K
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 89 GDY---PERVGQPECQYYLKTGTCKFGATCKFHHPRDKAG 125
++ P R G C YY+ G CKFG+ CKFHHP +G
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSG 217
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYS 357
+P RPG P+C +Y++ G CKFG C ++HP + + P RPGE C+ Y
Sbjct: 76 YPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGC-----DKLEHPQRPGEHDCLHYL 130
Query: 358 RYGICKFGPSCKFDHP 373
R+G CK+G +C+F+HP
Sbjct: 131 RFGRCKYGMNCRFNHP 146
>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
thaliana GN=At1g48195 PE=4 SV=1
Length = 82
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 56/78 (71%)
Query: 295 ESVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCI 354
E FPERPG+PEC +Y++TG+C C++HHP+ P C L+ GLPLRPG+ +C
Sbjct: 3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICP 62
Query: 355 FYSRYGICKFGPSCKFDH 372
YSR+GIC+ GP+CKFDH
Sbjct: 63 HYSRFGICRSGPTCKFDH 80
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYL 150
+PER G+PEC YYL+TG C CK+HHP++ + +LN G PLRP + C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 151 RTGQCKFGSTCKFHH 165
R G C+ G TCKF H
Sbjct: 66 RFGICRSGPTCKFDH 80
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 41 MESGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGD-YPERVGQPE 99
M PERPGEP+CSYY+RTG C C+++HP N + + P R GQ
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAI 60
Query: 100 CQYYLKTGTCKFGATCKFHH 119
C +Y + G C+ G TCKF H
Sbjct: 61 CPHYSRFGICRSGPTCKFDH 80
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ 167
+P RP E EC+YYLRTG C CK+HHP+
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPK 36
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 339 LSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGI 376
+S P RPGEP C +Y R G C +CK+ HP I
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNI 38
>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
Length = 389
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 14/83 (16%)
Query: 43 SGSLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQY 102
S + P RPGE +C +Y++ LC +G+ C +NHPP +++ P R+G+ +
Sbjct: 125 SSAYPVRPGEDNCLFYMKNHLCEWGSECCYNHPPLQEI-----------PCRIGK---KL 170
Query: 103 YLKTGTCKFGATCKFHHPRDKAG 125
K G CK G+ C F+HP+++ G
Sbjct: 171 DCKAGACKRGSNCPFNHPKERDG 193
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 15/78 (19%)
Query: 296 SVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIF 355
S +P RPG+ C FYMK C++G+ C ++HP P+ + +P R G+ L
Sbjct: 126 SAYPVRPGEDNCLFYMKNHLCEWGSECCYNHP-----PLQE-------IPCRIGKKLDC- 172
Query: 356 YSRYGICKFGPSCKFDHP 373
+ G CK G +C F+HP
Sbjct: 173 --KAGACKRGSNCPFNHP 188
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 28/107 (26%)
Query: 66 FGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAG 125
F +++H P +++A YP R G+ C +Y+K C++G+ C ++HP
Sbjct: 112 FDGRTQWSHAP----VLSSA-----YPVRPGEDNCLFYMKNHLCEWGSECCYNHP----- 157
Query: 126 IAGRVSLNVLGYPLR--PNEIECAYYLRTGQCKFGSTCKFHHPQPNN 170
PL+ P I + G CK GS C F+HP+ +
Sbjct: 158 ------------PLQEIPCRIGKKLDCKAGACKRGSNCPFNHPKERD 192
>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
Length = 321
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 32 QMNLRTNEAMESGS-LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNR 78
Q +++ E M S P RPG+ DC +Y++ GLCR+ ++CRFNHP R
Sbjct: 37 QDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRER--LLPVPDC-------VLSPIGLPLRP 348
+P RPG+ +CQFY+K G C++ + CRF+HP +R LPV C V P+ R
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRE 111
Query: 349 GEPLCIFYSR 358
E F R
Sbjct: 112 SESERRFDER 121
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHP 120
YP R G+ +CQ+YLK G C++ ++C+F+HP
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 137 YPLRPNEIECAYYLRTGQCKFGSTCKFHHP 166
YP+RP + +C +YL+ G C++ S+C+F+HP
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 345 PLRPGEPLCIFYSRYGICKFGPSCKFDHP 373
P+RPG+ C FY + G+C++ SC+F+HP
Sbjct: 53 PVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
Length = 527
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERL 331
+PERPG+P C++YMK G+CK C+++HP++R
Sbjct: 210 YPERPGEPFCRYYMKFGECKHMTFCKYNHPKDRF 243
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 91 YPERVGQPECQYYLKTGTCKFGATCKFHHPRDK 123
YPER G+P C+YY+K G CK CK++HP+D+
Sbjct: 210 YPERPGEPFCRYYMKFGECKHMTFCKYNHPKDR 242
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 47 PERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGD 90
PERPGEP C YY++ G C+ C++NHP +R T I+ +
Sbjct: 211 PERPGEPFCRYYMKFGECKHMTFCKYNHPKDRFSCKTTNTIRSE 254
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 127 AGRVSL--NVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ 167
AG +SL ++ YP RP E C YY++ G+CK + CK++HP+
Sbjct: 198 AGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHPK 240
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 342 IGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFT 378
+ P RPGEP C +Y ++G CK CK++HP F+
Sbjct: 208 VQYPERPGEPFCRYYMKFGECKHMTFCKYNHPKDRFS 244
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 24/161 (14%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C +Y+R LC+ G C + H D+ R P C +++K G C+ G
Sbjct: 99 CKHYLRN-LCKMGDNCEYTH---------------DFNLRT-MPVCIWFVKQGKCELGGE 141
Query: 115 CKFHHPRDKAGIAGRVS--LNVLGYPLRPNEIE---CAYYLRTGQCKFGSTCKFHHPQPN 169
C + HPRD+ + VLG I C Y G C G CK HP PN
Sbjct: 142 CLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYA-AGFCPDGKDCKLAHPSPN 200
Query: 170 NMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPS 210
+P+ P ++ P Q G W + P+
Sbjct: 201 RPPAESYINPIPPDPEAFNGPPPQ-LPAGYGRWREYKYDPN 240
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 305 PECQFYMKTGDCKFGAVCRFHHPRERLLPVPD-----CVLSPIGLPLRPGEPLCIFYSRY 359
P C +++K G C+ G C + HPR+R + PD CVL P LC Y+
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183
Query: 360 GICKFGPSCKFDHP 373
G C G CK HP
Sbjct: 184 GFCPDGKDCKLAHP 197
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 24/161 (14%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C +Y+R LC+ G C + H D+ R P C +++K G C+ G
Sbjct: 99 CKHYLRN-LCKMGDNCEYTH---------------DFNLRT-MPVCIWFVKQGKCELGGE 141
Query: 115 CKFHHPRDKAGIAGRVS--LNVLGYPLRPNEIE---CAYYLRTGQCKFGSTCKFHHPQPN 169
C + HPRD+ + VLG I C Y G C G CK HP PN
Sbjct: 142 CLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYA-AGFCPDGKDCKLAHPSPN 200
Query: 170 NMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPS 210
+P+ P ++ P Q G W + P+
Sbjct: 201 RPPAESYINPIPPDPEAFNGPPPQ-LPAGYGRWREYKYDPN 240
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 305 PECQFYMKTGDCKFGAVCRFHHPRERLLPVPD-----CVLSPIGLPLRPGEPLCIFYSRY 359
P C +++K G C+ G C + HPR+R + PD CVL P LC Y+
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183
Query: 360 GICKFGPSCKFDHP 373
G C G CK HP
Sbjct: 184 GFCPDGKDCKLAHP 197
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C++YLK G CKFG+ C+F H I GR+ +V L N IE A +L + +F
Sbjct: 305 CKFYLK-GNCKFGSKCRFKHEVPPNQIVGRIERSVDDSHL--NAIEDASFLYELEIRFSK 361
Query: 160 TCKFHHPQP 168
K+ + P
Sbjct: 362 DHKYPYQAP 370
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 139 LRPNEIE-CAYYLRTGQCKFGSTCKFHHPQPNNMMV 173
++ N +E C +YL+ G CKFGS C+F H P N +V
Sbjct: 297 VQENSLEICKFYLK-GNCKFGSKCRFKHEVPPNQIV 331
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 307 CQFYMKTGDCKFGAVCRFHH 326
C+FY+K G+CKFG+ CRF H
Sbjct: 305 CKFYLK-GNCKFGSKCRFKH 323
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 55 CSYYIRTGLCRFGATCRFNH--PPNR 78
C +Y++ G C+FG+ CRF H PPN+
Sbjct: 305 CKFYLK-GNCKFGSKCRFKHEVPPNQ 329
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 52/179 (29%)
Query: 290 YALQRESVFPERPGQPE---CQFYMKTGDCKFGAVCRFHHP--RERLLP---------VP 335
Y L+++ E P C++Y G C GA CRF H R+ + P
Sbjct: 188 YLLKKKRFLKEVGNSPSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAE 247
Query: 336 DCVLSPIGLPLR-------------------------PGEPLCIFYSRYGICKFGPSCKF 370
DC LS P R P+C +++YG C+ G SCK
Sbjct: 248 DCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKN 307
Query: 371 DHPMGIFTYNLSASS------------SADAPVRRFLGSSSATGALNLSSEGLVEAGSG 417
H + Y + S SAD P + S G++N G E GS
Sbjct: 308 QHILQCTDYAMFGSCNNPQCSLYHGAVSADVPEQTEAPISKTAGSINPEDSG-SEIGSN 365
Score = 38.5 bits (88), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 45/128 (35%), Gaps = 33/128 (25%)
Query: 50 PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTC 109
P C YY G+C GA CRF H P RK C +L G C
Sbjct: 203 PSAVYCRYYNANGICGKGAACRFVHEPTRKTI------------------CPKFL-NGRC 243
Query: 110 KFGATCKFHHPRDKAGI-AGRVSLNVLGYPLRPN----EIE-------CAYYLRTGQCKF 157
C H D I A R L LG PN I C + + G C+
Sbjct: 244 NKAEDCNLSHELDPRRIPACRYFL--LGKCNNPNCRYVHIHYSENAPICFEFAKYGFCEL 301
Query: 158 GSTCKFHH 165
G++CK H
Sbjct: 302 GTSCKNQH 309
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 46 LPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLA-IATARIKG-----DYPERVGQPE 99
+PER PDCSYY++ GLC A C + H +A I +KG D +
Sbjct: 294 IPERM--PDCSYYLQ-GLCNNEA-CPYRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYN 349
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLN 133
C + TG+C G CK HHP++++ R N
Sbjct: 350 CPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTN 383
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 55 CSYYIRTGLC-RFGATCRFNHPPNRKLAIATARIKG------------DYPERVGQPECQ 101
C ++ R G C + C + H P+ K+A+ T + G PER+ P+C
Sbjct: 246 CQFFTRFGKCNKDDGKCPYVHDPS-KIAVCTKFLNGLCANANCKLTHKVIPERM--PDCS 302
Query: 102 YYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNE------IECAYYLRTGQC 155
YYL+ G C A C + H IA + GY +E C + TG C
Sbjct: 303 YYLQ-GLCNNEA-CPYRHVHVNP-IAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSC 359
Query: 156 KFGSTCKFHHPQ 167
G CK HHP+
Sbjct: 360 SQGLKCKLHHPK 371
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 305 PECQFYMKTGDCKFGAVCRFHH--PRERLLPVPD-----CVLSPIGLPLRPGEPLCIFYS 357
PEC F+M+ G C G C + H P+ RL P P C L P LC+FY
Sbjct: 105 PECNFFMRNGYCSNGDECLYLHIDPQSRLPPCPHYDMGFCPLGPNCSKKHVRRKLCVFYL 164
Query: 358 RYGICKFGPSCK 369
G C GP CK
Sbjct: 165 A-GFCPDGPDCK 175
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 50 PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTC 109
P P C + ++G C G C H + K + T + C+++L+ G C
Sbjct: 38 PDRPVCKAF-QSGHCPNGTRCPERHVSDSKTSQPTGGLNSLV--------CKHWLR-GLC 87
Query: 110 KFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPN 169
K G C+F H N+ P EC +++R G C G C + H P
Sbjct: 88 KKGEHCEFLH-----------EYNLRKMP------ECNFFMRNGYCSNGDECLYLHIDPQ 130
Query: 170 NMM 172
+ +
Sbjct: 131 SRL 133
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 75 PPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNV 134
P ++ ++ A I ER G+ C+Y+L+ C G CKF H + V
Sbjct: 172 PKEKQQHLSQAFINQHTVERKGKQICKYFLER-KCIKGDQCKFDHDAEIEKKKEMCKFYV 230
Query: 135 LGYPLR-------PNEIECAYYLRTGQCKFGSTCKFHH 165
GY R NE C +Y +C G CKF H
Sbjct: 231 QGYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ Y ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQANR-------HPKYKTELCHKFYLQ-GRCPYGS 152
Query: 160 TCKFHH 165
C F H
Sbjct: 153 RCHFIH 158
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C Y +G CR+GA C+F H + R +P+ + ++YL+ G C +G+
Sbjct: 101 CRTYSESGRCRYGAKCQFAH------GLGELRQANRHPKYKTELCHKFYLQ-GRCPYGSR 153
Query: 115 CKF-HHPRDKAGIAG-----RVSLNVLGYP 138
C F H+P + + G R S++ G P
Sbjct: 154 CHFIHNPTEDLALPGQPHVLRQSISFSGLP 183
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 45/159 (28%)
Query: 12 GAAVTEGPSLSPSLNQDALW-----QMNLRTNEAMESGSLPERPGEPDCSYYIRTGLCRF 66
GA V +GP + ++ + + + T E + ++ E G+ C Y++ G C
Sbjct: 229 GARVIKGPYVFSGMDDFQEYSKPGKKWKVMTQEFINQHTV-EHKGKQICKYFLE-GRCIK 286
Query: 67 GATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGI 126
G C+FNH D + C+YYL+ G C G C + H
Sbjct: 287 GDHCKFNH---------------DAELEKKKEVCKYYLQ-GYCTKGENCIYMH------- 323
Query: 127 AGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHH 165
+E C +Y +C G CKF H
Sbjct: 324 ---------------SEFPCKFYHSGAKCYQGDKCKFSH 347
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C Y +G CR+GA C+F H P R +P+ + ++YL+ G C +G+
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGE------LRQANRHPKYKTELCHKFYLQ-GRCPYGSR 154
Query: 115 CKF-HHPRDKAGIAG-----RVSLNVLGYP 138
C F H+P + + G R S++ G P
Sbjct: 155 CHFIHNPTEDLALPGQPHVLRQSISFSGLP 184
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ Y ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQANR-------HPKYKTELCHKFYLQ-GRCPYGS 153
Query: 160 TCKFHH 165
C F H
Sbjct: 154 RCHFIH 159
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 76 PNRKLAIATAR-IKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNV 134
P +K + T I E G+ C+Y+L+ G C G CKF H + +
Sbjct: 253 PGKKWKVMTQEFINQHTVEHKGKQICKYFLE-GRCIKGDQCKFDHDAELEKRKEICKFYL 311
Query: 135 LGYPLR-------PNEIECAYYLRTGQCKFGSTCKFHH 165
GY + NE C +Y +C G CKF H
Sbjct: 312 QGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSH 349
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 51/139 (36%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C +Y+ G C+ G C+F+H T + P C +Y + G+C G
Sbjct: 435 CHFYLH-GKCQQGNLCKFSHD--------TTPLTKSKP-------CTHYAR-GSCLKGDD 477
Query: 115 CKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNMMVS 174
C + H K YP C ++ G C G CKF H
Sbjct: 478 CPYDHELSK-------------YP-------CHNFMENGMCIRGDKCKFSH--------- 508
Query: 175 LRGSPVYPTVQSPTTPSQQ 193
V PT + P+TP +
Sbjct: 509 -----VIPTAEGPSTPDAK 522
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGE-PLCIFYSRY------ 359
C FY+ G C+ G +C+F H L C G L+ + P S+Y
Sbjct: 435 CHFYLH-GKCQQGNLCKFSHDTTPLTKSKPCTHYARGSCLKGDDCPYDHELSKYPCHNFM 493
Query: 360 --GICKFGPSCKFDH 372
G+C G CKF H
Sbjct: 494 ENGMCIRGDKCKFSH 508
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 18/62 (29%)
Query: 58 YIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKF 117
+ R G C G C F+H ++ T R P C+Y+LK G CKFG C
Sbjct: 49 FFRNGTCTAGENCPFSH------SLETER-----------PICKYFLK-GNCKFGPKCAL 90
Query: 118 HH 119
H
Sbjct: 91 SH 92
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+++ + GTC G C F H + RP C Y+L+ G CKFG
Sbjct: 47 CKFF-RNGTCTAGENCPFSHSLETE---------------RP---ICKYFLK-GNCKFGP 86
Query: 160 TCKFHHPQPNN 170
C H P N
Sbjct: 87 KCALSHALPGN 97
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGP 366
C+F+ + G C G C F H L P+C ++ + G CKFGP
Sbjct: 47 CKFF-RNGTCTAGENCPFSHS------------------LETERPICKYFLK-GNCKFGP 86
Query: 367 SCKFDHPM 374
C H +
Sbjct: 87 KCALSHAL 94
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 109 CRTFSESGRCRYGAKCQFAHGLGELRQANR-------HPKYKTELCHKFYLQ-GRCPYGS 160
Query: 160 TCKFHH 165
C F H
Sbjct: 161 RCHFIH 166
>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cps3 PE=1 SV=3
Length = 583
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 92 PERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLR 151
P+ + C+++ + GTC G C F H + A E Y +
Sbjct: 33 PKSLQHVPCKFF-RQGTCTSGKNCIFSHDLELA-----------------TEKTICKYFQ 74
Query: 152 TGQCKFGSTCKFHHPQPNNMMVSLRG 177
G CKFGS C H P+ V R
Sbjct: 75 KGNCKFGSKCALEHVLPDGRKVKTRA 100
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C ++ R G C G C F+H L +AT + C+Y+ K G CKFG+
Sbjct: 41 CKFF-RQGTCTSGKNCIFSH----DLELATEKTI-----------CKYFQK-GNCKFGSK 83
Query: 115 CKFHH 119
C H
Sbjct: 84 CALEH 88
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 25/128 (19%)
Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGP 366
C+F+ + G C G C F H L L + +C ++ + G CKFG
Sbjct: 41 CKFF-RQGTCTSGKNCIFSH----------------DLELATEKTICKYFQK-GNCKFGS 82
Query: 367 SCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLPETR 426
C +H + + A AP +GSSS N+S+ + S LP T
Sbjct: 83 KCALEH---VLPDGRKVKTRAFAPSTTAMGSSSQ----NISAAPMANIISNNDKILPMTT 135
Query: 427 QMSSGDDE 434
S+ E
Sbjct: 136 MASATASE 143
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGS 159
C+ + ++G C++GA C+F H + A R +P E+ +YL+ G+C +GS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQASR-------HPKYKTELCHKFYLQ-GRCPYGS 158
Query: 160 TCKFHH 165
C F H
Sbjct: 159 RCHFIH 164
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C + +G CR+GA C+F H + R +P+ + ++YL+ G C +G+
Sbjct: 107 CRTFSESGRCRYGAKCQFAH------GLGELRQASRHPKYKTELCHKFYLQ-GRCPYGSR 159
Query: 115 CKF-HHPRDKAGIAG-----RVSLNVLGYP 138
C F H+P + G R S++ G P
Sbjct: 160 CHFIHNPSEDLAAPGHPHVLRQSISFSGLP 189
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 33/123 (26%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKG------------DYPERVGQPECQY 102
C YY R G C G C + H P K+A+ T ++G + + P C Y
Sbjct: 668 CMYYNRFGRCNRGECCPYIHDPE-KVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSY 726
Query: 103 YLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCK 162
+LK G C + C + H Y R E+ C+ +L+ G C G+ CK
Sbjct: 727 FLK-GICS-NSNCPYSH----------------VYVSRKAEV-CSDFLK-GYCPLGAKCK 766
Query: 163 FHH 165
H
Sbjct: 767 KKH 769
>sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1
Length = 215
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPN-RKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGA 113
C +++R GLC+ G C F H N RK+ PEC +Y K G C +
Sbjct: 71 CKHWLR-GLCKKGDHCEFLHEYNLRKM-----------------PECLFYSKNGYCTQTS 112
Query: 114 TCKFHHPRDKAGIAGRVSLNVLGYPLRPN-------EIECAYYLRTGQCKFGSTCKFHHP 166
C + H ++ I ++ N PN + C YL G C G C+F HP
Sbjct: 113 ECLYLHVDPQSKIPECLNYNQGFCSEGPNCKNRHVRRVLCPLYL-YGFCPKGPECEFTHP 171
Query: 167 QPNNMMVSLRGSP 179
+ + ++LR P
Sbjct: 172 KFDFHNLNLRIRP 184
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 305 PECQFYMKTGDCKFGAVCRFHH--PRERLLPVPDCVLSPIGL--------PLRPGEPLCI 354
PEC FY K G C + C + H P+ + +P+C+ G LC
Sbjct: 97 PECLFYSKNGYCTQTSECLYLHVDPQSK---IPECLNYNQGFCSEGPNCKNRHVRRVLCP 153
Query: 355 FYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVR 392
Y YG C GP C+F HP F +NL+ D ++
Sbjct: 154 LY-LYGFCPKGPECEFTHPKFDF-HNLNLRIRPDNLIQ 189
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 25/120 (20%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C +++R GLC+ G C F H N + PECQ+Y+K G C
Sbjct: 60 CKHWLR-GLCKKGLNCEFLHEYNLQ----------------KMPECQFYVKNGFCTQSPD 102
Query: 115 CKFHH--PRDKAGIA-----GRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ 167
C++ H P K + G + + C Y+ TG C G C+F HP+
Sbjct: 103 CQYLHIDPASKIPVCFNYEKGFCKMGPECSRKHIRRMPCELYM-TGFCPKGRVCEFAHPK 161
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 53 PDCSYYIRTGLCRFGATCRFNH-PPNRKLAIATARIKGDY---PE----RVGQPECQYYL 104
P+C +Y++ G C C++ H P K+ + KG PE + + C+ Y+
Sbjct: 86 PECQFYVKNGFCTQSPDCQYLHIDPASKIPVCFNYEKGFCKMGPECSRKHIRRMPCELYM 145
Query: 105 KTGTCKFGATCKFHHPR 121
TG C G C+F HP+
Sbjct: 146 -TGFCPKGRVCEFAHPK 161
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 18/68 (26%)
Query: 305 PECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKF 364
PECQFY+K G C C++ H + P P+C Y + G CK
Sbjct: 86 PECQFYVKNGFCTQSPDCQYLH------------IDPAS-----KIPVCFNYEK-GFCKM 127
Query: 365 GPSCKFDH 372
GP C H
Sbjct: 128 GPECSRKH 135
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 33/123 (26%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKG------------DYPERVGQPECQY 102
C YY R G C G C + H P K+A+ T ++G + + P C Y
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPE-KVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSY 731
Query: 103 YLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCK 162
+LK G C + C + H Y R E+ C+ +L+ G C G+ CK
Sbjct: 732 FLK-GICS-NSNCPYSH----------------VYVSRKAEV-CSDFLK-GYCPLGAKCK 771
Query: 163 FHH 165
H
Sbjct: 772 KKH 774
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 25/120 (20%)
Query: 55 CSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGAT 114
C ++++ GLC+ G C + H N + PECQ + ++G C G
Sbjct: 92 CKHFLK-GLCKKGLKCEYLHEYNLR----------------RMPECQSFSRSGYCPNGDD 134
Query: 115 CKFHHPRDKAGI-------AGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ 167
C + H R++A + G L L C YYL G C G C HP+
Sbjct: 135 CLYQHVREQARLPPCENYDQGFCELGPLCSKRHVRRRLCKYYL-AGFCPEGKACPDAHPR 193
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 53 PDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERV-GQPECQYYLKTGTCKF 111
P C Y G C G C HP ++ +T G P G C+++LK G CK
Sbjct: 45 PVCKAY-SEGHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLK-GLCKK 102
Query: 112 GATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHH 165
G C++ H N+ P EC + R+G C G C + H
Sbjct: 103 GLKCEYLH-----------EYNLRRMP------ECQSFSRSGYCPNGDDCLYQH 139
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 305 PECQFYMKTGDCKFGAVCRFHHPRE--RLLPVPD-----CVLSPIGLPLRPGEPLCIFYS 357
PECQ + ++G C G C + H RE RL P + C L P+ LC +Y
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQARLPPCENYDQGFCELGPLCSKRHVRRRLCKYY- 176
Query: 358 RYGICKFGPSCKFDHP 373
G C G +C HP
Sbjct: 177 LAGFCPEGKACPDAHP 192
>sp|Q02799|LEE1_YEAST Zinc finger protein LEE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LEE1 PE=4 SV=1
Length = 301
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 103 YLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCK 162
+ K G C+ G++C F H D A N + C Y+ + G CKFG+ C
Sbjct: 95 FFKMGNCQAGSSCPFSHSPDIISSA--------------NNLPCKYFAK-GNCKFGNKCV 139
Query: 163 FHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGGITNWSRASFIPSP 211
H PN ++ + P+ T PSQ +Y + S +++ P
Sbjct: 140 NAHVLPNGFKMNSK-EPI-----DITPPSQNNYLSHARSASFSTYTSPP 182
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 16/68 (23%)
Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGP 366
C+F+ K G+C+ G+ C F H PD + S LP C ++++ G CKFG
Sbjct: 93 CKFF-KMGNCQAGSSCPFSHS-------PDIISSANNLP-------CKYFAK-GNCKFGN 136
Query: 367 SCKFDHPM 374
C H +
Sbjct: 137 KCVNAHVL 144
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 5 AGISLSRGAAVTEGPSLSPSLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIRTGLC 64
A ++LS+ V S + + + + N + + P C ++ + G C
Sbjct: 47 ANVNLSKNCTVGNQLPFSSRQQKIIMEHLLITKNNSQQQKDYSHVP----CKFF-KMGNC 101
Query: 65 RFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHH 119
+ G++C F+H P+ I++A + P C+Y+ K G CKFG C H
Sbjct: 102 QAGSSCPFSHSPD---IISSA---NNLP-------CKYFAK-GNCKFGNKCVNAH 142
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 97 QPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCK 156
Q C+Y+L G C+ G+ C F H + +P+ + C ++LR GQC
Sbjct: 5 QVTCRYFLH-GVCREGSRCLFSHDLATS---------------KPSTV-CRFFLR-GQCA 46
Query: 157 FGSTCKFHHPQPNNMMVSLRGSPVYPTVQ-SPTTPSQQS 194
+G+ C++ H +P N V + + P + P P+Q++
Sbjct: 47 YGTRCRYDHVKPCNGTVFIPPQEMSPVLSPPPLFPAQEA 85
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 17/70 (24%)
Query: 50 PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTC 109
P + C Y++ G+CR G+ C F+H +AT++ P V C+++L+ G C
Sbjct: 3 PKQVTCRYFLH-GVCREGSRCLFSH------DLATSK-----PSTV----CRFFLR-GQC 45
Query: 110 KFGATCKFHH 119
+G C++ H
Sbjct: 46 AYGTRCRYDH 55
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 146 CAYYLRTGQCKFGSTCKFHHPQPNNMMV 173
C +YL+ G CKFGS CKF H P + M+
Sbjct: 305 CKFYLK-GNCKFGSKCKFKHEVPPHQMI 331
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 100 CQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNV 134
C++YLK G CKFG+ CKF H + GR NV
Sbjct: 305 CKFYLK-GNCKFGSKCKFKHEVPPHQMIGRAERNV 338
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 293 QRESVFPERPGQPE-CQFYMKTGDCKFGAVCRFHH 326
Q+ES R PE C+FY+K G+CKFG+ C+F H
Sbjct: 290 QKESSKNVRDTSPETCKFYLK-GNCKFGSKCKFKH 323
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 25/159 (15%)
Query: 31 WQMNLRTNEAMESGSLP----ERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAR 86
+ + L + + + LP ++ G C +++++ C G C F H K +
Sbjct: 13 FDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSA-CGKGGMCPFRHISGEKTVVCKHW 71
Query: 87 I-----KGDYPERVGQ------PECQYYLKTGTCKFGATCKFHHPRDKAGIA-------G 128
+ KGD E + + PEC +Y K G C C F H ++ I G
Sbjct: 72 LRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRG 130
Query: 129 RVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQ 167
L + C YL G C G CKF HP+
Sbjct: 131 FCKHGPLCRHRHTRRVICVNYL-VGFCIEGPNCKFMHPR 168
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 305 PECQFYMKTGDCKFGAVCRFHH--PRERLLPVP-----DCVLSPIGLPLRPGEPLCIFYS 357
PEC FY K G+C C F H P ++ P C P+ +C+ Y
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 358 RYGICKFGPSCKFDHP 373
G C GP+CKF HP
Sbjct: 152 LVGFCIEGPNCKFMHP 167
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 92 PERVGQPE-CQYYLKTGTCKFGATCKFHHPRDKAGIAG-RVSLNVLGYPLRPNEIECAYY 149
P+++ + E C+ + G+C +G+ C+F H G+ +V + + +P C +
Sbjct: 166 PKQLYKTELCESFTLKGSCPYGSKCQFAH-----GLGELKVKKSCKNFRTKP----CVNW 216
Query: 150 LRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTVQSPTTPSQQSYAGG 198
+ G C +G C F H N++ V ++ Y V S + S + + G
Sbjct: 217 EKLGYCPYGRRCCFKHGDDNDIAVYVKAG-TYCNVSSTSKQSDEKRSNG 264
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 307 CQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGP 366
C+ + G C +G+ C+F H L C +P C+ + + G C +G
Sbjct: 175 CESFTLKGSCPYGSKCQFAHGLGELKVKKSCK----NFRTKP----CVNWEKLGYCPYGR 226
Query: 367 SCKFDH----PMGIF----TYNLSASSSADAPVRRFLGSSSA 400
C F H + ++ TY +S+S + +R G SA
Sbjct: 227 RCCFKHGDDNDIAVYVKAGTYCNVSSTSKQSDEKRSNGRGSA 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,951,794
Number of Sequences: 539616
Number of extensions: 7847880
Number of successful extensions: 18805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 17028
Number of HSP's gapped (non-prelim): 1193
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)