Query 047248
Match_columns 439
No_of_seqs 356 out of 1639
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.4 4.6E-14 1.6E-18 113.7 4.8 68 50-153 8-75 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.4 2.6E-14 9E-19 120.4 2.7 88 45-154 6-95 (98)
3 1m9o_A Tristetraproline; Cys3H 99.4 5.2E-14 1.8E-18 112.4 3.7 67 301-375 9-75 (77)
4 1m9o_A Tristetraproline; Cys3H 99.4 1.9E-13 6.3E-18 109.2 4.1 69 48-123 8-76 (77)
5 2rhk_C Cleavage and polyadenyl 99.3 5.4E-13 1.8E-17 106.4 2.8 58 49-124 13-70 (72)
6 2cqe_A KIAA1064 protein; CCCH 99.2 7.8E-12 2.7E-16 105.3 5.3 55 298-375 7-61 (98)
7 2d9n_A Cleavage and polyadenyl 99.1 1.6E-11 5.6E-16 98.7 3.6 56 96-170 9-64 (77)
8 2rhk_C Cleavage and polyadenyl 99.1 1.1E-11 3.6E-16 98.9 2.4 56 96-170 15-70 (72)
9 3d2q_A Muscleblind-like protei 99.1 1.8E-11 6.1E-16 96.8 1.8 60 53-124 7-67 (70)
10 2e5s_A Otthump00000018578; ZF- 99.0 5.8E-11 2E-15 100.0 2.4 61 52-124 20-81 (98)
11 3d2q_A Muscleblind-like protei 98.9 2.2E-10 7.6E-15 90.6 1.8 61 97-170 6-67 (70)
12 3d2n_A Muscleblind-like protei 98.9 6.8E-10 2.3E-14 90.8 3.4 59 52-124 9-68 (83)
13 2e5s_A Otthump00000018578; ZF- 98.8 1.1E-09 3.6E-14 92.3 3.1 66 299-377 15-81 (98)
14 3d2n_A Muscleblind-like protei 98.8 1.3E-09 4.4E-14 89.1 2.3 61 96-171 8-69 (83)
15 2rpp_A Muscleblind-like protei 98.8 2.1E-09 7.1E-14 89.1 2.8 59 52-124 17-76 (89)
16 2rpp_A Muscleblind-like protei 98.7 8E-09 2.7E-13 85.5 4.0 60 97-171 17-77 (89)
17 3u9g_A Zinc finger CCCH-type a 98.6 6.6E-08 2.3E-12 92.0 6.4 82 54-169 91-199 (229)
18 2lhn_A Nuclear polyadenylated 97.3 6.1E-07 2.1E-11 72.8 0.0 66 52-169 9-74 (80)
19 3u9g_A Zinc finger CCCH-type a 98.0 5.4E-06 1.8E-10 78.9 4.8 64 24-123 132-199 (229)
20 2d9m_A Zinc finger CCCH-type d 97.2 7.8E-05 2.7E-09 58.7 1.2 29 304-333 20-48 (69)
21 2d9m_A Zinc finger CCCH-type d 96.7 0.00033 1.1E-08 55.2 0.9 27 53-80 21-47 (69)
22 2fc6_A Nuclear, target of EGR1 96.6 0.0009 3.1E-08 49.2 2.1 31 348-378 18-48 (50)
23 2fc6_A Nuclear, target of EGR1 94.8 0.01 3.6E-07 43.6 1.7 29 50-78 18-46 (50)
24 2lhn_A Nuclear polyadenylated 93.8 0.0052 1.8E-07 49.7 0.0 42 97-166 9-50 (80)
25 3u1l_A PRE-mRNA-splicing facto 91.8 0.048 1.6E-06 52.3 1.3 26 52-78 70-95 (240)
26 3u1l_A PRE-mRNA-splicing facto 91.7 0.036 1.2E-06 53.1 0.3 25 98-123 71-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 61.1 1.7 5.9E-05 41.2 0.0 25 143-170 192-216 (223)
28 3v33_A Ribonuclease ZC3H12A; r 59.3 1.9 6.7E-05 40.9 0.0 24 52-78 192-215 (223)
29 2kqb_A Aprataxin and PNK-like 56.3 7 0.00024 32.0 2.8 54 314-380 15-77 (89)
30 2kuo_A Aprataxin and PNK-like 37.2 8.6 0.00029 31.6 0.5 9 107-115 62-70 (91)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.6e-14 Score=113.69 Aligned_cols=68 Identities=29% Similarity=0.675 Sum_probs=56.9
Q ss_pred CCCcCccchhhcCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcCcccc
Q 047248 50 PGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGR 129 (439)
Q Consensus 50 pg~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~~~~~~ 129 (439)
....+|+||++ |.|++|++|+|+|+.... ++++|+||+++|.|. |++|+|.|......
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~---- 65 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMPECYFYSKFGECS-NKECPFLHIDPESK---- 65 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS----
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC----------------cCCCCcccCCCCccC-CCCeeccCCCcccc----
Confidence 34579999998 999999999999997642 357899999999999 99999999976543
Q ss_pred ccccccCCCCcccccccccccccc
Q 047248 130 VSLNVLGYPLRPNEIECAYYLRTG 153 (439)
Q Consensus 130 v~~n~~G~P~r~~~~~C~~y~~~G 153 (439)
..+|.+|. .|
T Consensus 66 -------------~~~C~~f~-~g 75 (77)
T 2d9n_A 66 -------------IKDCPWSG-PS 75 (77)
T ss_dssp -------------CSSSSCCT-TT
T ss_pred -------------CCCCcccc-cC
Confidence 45799998 44
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.43 E-value=2.6e-14 Score=120.39 Aligned_cols=88 Identities=24% Similarity=0.383 Sum_probs=69.2
Q ss_pred CCCCCCCCcCccchhhcCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 047248 45 SLPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124 (439)
Q Consensus 45 ~~p~Rpg~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~ 124 (439)
.+..+..+.+|+||++ |.|++|++|+|+|+ +.+|++|++.|.|++|++|+|+|.....
T Consensus 6 ~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~---------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~~ 63 (98)
T 2cqe_A 6 SGELPKKRELCKFYIT-GFCARAENCPYMHG---------------------DFPCKLYHTTGNCINGDDCMFSHDPLTE 63 (98)
T ss_dssp CCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS---------------------SSBCSHHHHTSCCSSCTTCSSBCCCCCH
T ss_pred cCCCCCCCccCccccc-CcCCCCCCCCCCCC---------------------CCcCcCcccCCcCCCCCCCcccCCCCcc
Confidence 4556677899999975 99999999999998 1479999766999999999999996543
Q ss_pred Ccccc--ccccccCCCCccccccccccccccc
Q 047248 125 GIAGR--VSLNVLGYPLRPNEIECAYYLRTGQ 154 (439)
Q Consensus 125 ~~~~~--v~~n~~G~P~r~~~~~C~~y~~~G~ 154 (439)
..... ..++..+++.+.++++|.++.++|.
T Consensus 64 ~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 64 ETRELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred cchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 21111 1234457788899999999998875
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.43 E-value=5.2e-14 Score=112.43 Aligned_cols=67 Identities=28% Similarity=0.594 Sum_probs=30.0
Q ss_pred CCCCccchhhhhcCCCCCCCCcccCCCCCcCCCCCCcccCCCCCCCCCCCcCCcccccccCCCCCCCCCCCCCCC
Q 047248 301 RPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMG 375 (439)
Q Consensus 301 rp~~~~C~~y~ktG~C~~G~~Ckf~Hp~~~~~~~~~~~l~~~g~p~r~~~~~C~~Y~~~G~Ck~G~~CkF~HP~~ 375 (439)
..++.+|++|+++|.|+||++|+|+|+.+++.... ...+.++.+|.+|.++|.|++|.+|+|.|+..
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 56789999999999999999999999998765321 11245678999999999999999999999864
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.38 E-value=1.9e-13 Score=109.21 Aligned_cols=69 Identities=26% Similarity=0.600 Sum_probs=28.9
Q ss_pred CCCCCcCccchhhcCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCC
Q 047248 48 ERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDK 123 (439)
Q Consensus 48 ~Rpg~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~ 123 (439)
.+.++.+|++|+++|.|++|++|+|+|+..+..... . ..+.++.+|++|..+|.|++|++|+|+|...+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~------~-~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN------R-HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc------c-cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 356778999998889999999999999987643210 0 11235679998887899999999999998653
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.31 E-value=5.4e-13 Score=106.37 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=49.7
Q ss_pred CCCCcCccchhhcCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 047248 49 RPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124 (439)
Q Consensus 49 Rpg~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~ 124 (439)
....++|+||++ |.|++|++|+|+|+.+.. ++++|+||++.|.|.+ ++|+|.|.....
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc----------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 456689999998 999999999999997542 3678999999899998 999999997654
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.22 E-value=7.8e-12 Score=105.26 Aligned_cols=55 Identities=29% Similarity=0.565 Sum_probs=48.7
Q ss_pred CCCCCCCccchhhhhcCCCCCCCCcccCCCCCcCCCCCCcccCCCCCCCCCCCcCCcccccccCCCCCCCCCCCCCCC
Q 047248 298 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMG 375 (439)
Q Consensus 298 ~perp~~~~C~~y~ktG~C~~G~~Ckf~Hp~~~~~~~~~~~l~~~g~p~r~~~~~C~~Y~~~G~Ck~G~~CkF~HP~~ 375 (439)
+..+.++++|+||+ +|.|++|+.|+|+|+ ..+|.+|+++|.|++|.+|+|.|+..
T Consensus 7 ~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 7 GELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 44567899999997 599999999999998 24899999899999999999999964
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=98.75 Aligned_cols=56 Identities=34% Similarity=0.807 Sum_probs=48.5
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCCc
Q 047248 96 GQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNN 170 (439)
Q Consensus 96 ~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~~ 170 (439)
++.+|+||++ |.|++|++|+|+|+.... +.++|+||++.|.|. |++|+|.|..+..
T Consensus 9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 9 KTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES 64 (77)
T ss_dssp TTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS
T ss_pred cceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc
Confidence 5679999999 999999999999997643 235799999769999 8999999998754
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=98.86 Aligned_cols=56 Identities=34% Similarity=0.791 Sum_probs=48.1
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCCc
Q 047248 96 GQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNN 170 (439)
Q Consensus 96 ~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~~ 170 (439)
+..+|+||++ |.|++|++|+|+|+.... ..++|+||++.|.|.+ ++|+|.|..+..
T Consensus 15 k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 15 KTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 5679999999 999999999999996543 2458999996699999 999999998864
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.09 E-value=1.8e-11 Score=96.85 Aligned_cols=60 Identities=33% Similarity=0.744 Sum_probs=47.5
Q ss_pred cCccchhhcCCCCCCC-CCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 047248 53 PDCSYYIRTGLCRFGA-TCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124 (439)
Q Consensus 53 ~~C~yy~rtG~C~~Gd-~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~ 124 (439)
++|++|++ |.|.+|+ .|+|+|+.+.... -+...++++|++|++ |.|.++ +|+|.|+...+
T Consensus 7 ~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~---------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 7 EVCREYQR-GNCNRGENDCRFAHPADSTMI---------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EBCHHHHT-TCCSSCTTTCSSBCCCTTSCC---------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred hhCHHHhc-CCCCCCCCCCCCccCcccccc---------cccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 68999987 9999999 5999999864210 011224689999999 999998 99999997654
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=5.8e-11 Score=100.00 Aligned_cols=61 Identities=31% Similarity=0.685 Sum_probs=49.1
Q ss_pred CcCccchhhcCCCCCCC-CCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 047248 52 EPDCSYYIRTGLCRFGA-TCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124 (439)
Q Consensus 52 ~~~C~yy~rtG~C~~Gd-~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~ 124 (439)
.++|++|++ |.|++|+ .|+|+|+.+.... -+....+++|++|++ |.|.++ +|+|.|+....
T Consensus 20 ~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~---------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 20 LEVCREFQR-GNCARGETDCRFAHPADSTMI---------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp EEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC---------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred hhhhHHHhc-CcCCCCCCCCCCcCCchhccc---------cccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence 479999999 9999999 7999999865210 011224689999999 999998 99999997654
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.92 E-value=2.2e-10 Score=90.55 Aligned_cols=61 Identities=31% Similarity=0.738 Sum_probs=47.9
Q ss_pred CccccccccccCCCCCC-CCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCCc
Q 047248 97 QPECQYYLKTGTCKFGA-TCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNN 170 (439)
Q Consensus 97 ~p~C~~f~ktG~Ck~G~-~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~~ 170 (439)
..+|++|++ |.|++|+ +|+|+|+....... +......+|.+|+ .|.|.+| +|+|.|+.+++
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccC-cCCCCCC-CcCeeCCHHHH
Confidence 468999998 9999999 59999997653211 0112457899999 6999998 99999997653
No 12
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.88 E-value=6.8e-10 Score=90.82 Aligned_cols=59 Identities=29% Similarity=0.544 Sum_probs=47.6
Q ss_pred CcCccchhhcCCCCCCC-CCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 047248 52 EPDCSYYIRTGLCRFGA-TCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124 (439)
Q Consensus 52 ~~~C~yy~rtG~C~~Gd-~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~ 124 (439)
.++|++|++ |.|.+|+ .|+|+|+....... + -..++|.+|++ |.|.++ +|+|.|+....
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~---------~--~~~~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQVE---------N--GRVIACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE---------T--TEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCcccccc---------C--CceeehhHhhh-ccccCC-CcceeCChHHH
Confidence 368999999 9999997 99999998642100 1 13579999999 999988 89999997654
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=92.27 Aligned_cols=66 Identities=26% Similarity=0.543 Sum_probs=52.8
Q ss_pred CCCCCCccchhhhhcCCCCCCC-CcccCCCCCcCCCCCCcccCCCCCCCCCCCcCCcccccccCCCCCCCCCCCCCCCCC
Q 047248 299 PERPGQPECQFYMKTGDCKFGA-VCRFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIF 377 (439)
Q Consensus 299 perp~~~~C~~y~ktG~C~~G~-~Ckf~Hp~~~~~~~~~~~l~~~g~p~r~~~~~C~~Y~~~G~Ck~G~~CkF~HP~~~~ 377 (439)
....+.++|++|++ |.|+.|+ .|+|.|+.+.... .+...+..+|.+|+ .|.|..| +|+|.|+..++
T Consensus 15 ~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~----------~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 15 LRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMI----------DTSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp CCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC----------CTTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred cChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc----------cccCCccccchhhc-cCCCCCC-CcCccCChHHH
Confidence 34456689999999 9999999 7999999875421 12345667999999 6999998 99999997543
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=89.15 Aligned_cols=61 Identities=31% Similarity=0.689 Sum_probs=48.7
Q ss_pred CCccccccccccCCCCCC-CCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCCcc
Q 047248 96 GQPECQYYLKTGTCKFGA-TCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNM 171 (439)
Q Consensus 96 ~~p~C~~f~ktG~Ck~G~-~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~~~ 171 (439)
+.++|++|++ |.|++|+ +|+|+|+....... .....+|.+|+ .|.|.++ .|+|.|+.....
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSL-KGRCSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHH-TTCCCCS-SCSSCCCCHHHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhh-hccccCC-CcceeCChHHHH
Confidence 3468999999 9999997 99999997653211 11346899999 7999997 999999987654
No 15
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-09 Score=89.07 Aligned_cols=59 Identities=31% Similarity=0.605 Sum_probs=47.9
Q ss_pred CcCccchhhcCCCCCCC-CCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 047248 52 EPDCSYYIRTGLCRFGA-TCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKA 124 (439)
Q Consensus 52 ~~~C~yy~rtG~C~~Gd-~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~ 124 (439)
.++|++|+| |.|.+|+ .|+|+|+....... . -..++|.+|++ |.|.++ +|+|.|+....
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~---------~--~~~~vC~dflk-G~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE---------N--GRVIACFDSLK-GRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB---------T--TBEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc---------C--Cceeeehhhhh-CcCCCC-CcceecCHHHH
Confidence 369999999 9999998 99999998752110 1 13689999999 999976 89999997654
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.70 E-value=8e-09 Score=85.54 Aligned_cols=60 Identities=30% Similarity=0.677 Sum_probs=48.7
Q ss_pred CccccccccccCCCCCC-CCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCCcc
Q 047248 97 QPECQYYLKTGTCKFGA-TCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPNNM 171 (439)
Q Consensus 97 ~p~C~~f~ktG~Ck~G~-~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~~~ 171 (439)
.++|++|++ |.|++|+ +|+|+|+....... .....+|.+|+ .|.|.++ +|+|.|+.....
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl~ 77 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSL-KGRCSRE-NCKYLHPPTHLK 77 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHHH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhh-hCcCCCC-CcceecCHHHHH
Confidence 468999999 9999998 99999998753211 11356899999 8999995 999999987653
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.56 E-value=6.6e-08 Score=92.01 Aligned_cols=82 Identities=23% Similarity=0.490 Sum_probs=63.3
Q ss_pred CccchhhcCCCC----CCCCCCCCCCCchhhhhhhhhcc-------------------CCCCCCCCCccccccccc----
Q 047248 54 DCSYYIRTGLCR----FGATCRFNHPPNRKLAIATARIK-------------------GDYPERVGQPECQYYLKT---- 106 (439)
Q Consensus 54 ~C~yy~rtG~C~----~Gd~CkF~H~~~~~~~~~~~~~~-------------------~e~Per~~~p~C~~f~kt---- 106 (439)
+||+|+- |.|+ .+..|+|+|+..........+.. ...|| +|.+| +.
T Consensus 91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPe-----iC~~Y-kG~g~~ 163 (229)
T 3u9g_A 91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPE-----ICKSY-KGEGRK 163 (229)
T ss_dssp CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCC-----BCTTC-CCSSSC
T ss_pred echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCch-----HHHHh-CCCCCC
Confidence 7999996 9993 45789999998653322222211 12454 89999 73
Q ss_pred cCCCCCCCCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCCCCC
Q 047248 107 GTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPN 169 (439)
Q Consensus 107 G~Ck~G~~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~ 169 (439)
|.|++++.|...|. |.+|+ .|.|+| .+|+-.|....
T Consensus 164 g~C~~~~~C~kLHI-------------------------C~~Fl-~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 164 QTCGQPQPCERLHI-------------------------CEHFT-RGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CSCSSSSCCCSBCS-------------------------CHHHH-TTCCCC-SSCSSCCCTTS
T ss_pred CcCCCCCCCcceec-------------------------cchhh-cCCcCC-CCccCccCccC
Confidence 69999999999997 99999 999999 89999998754
No 18
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=6.1e-07 Score=72.82 Aligned_cols=66 Identities=26% Similarity=0.671 Sum_probs=53.8
Q ss_pred CcCccchhhcCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcCcccccc
Q 047248 52 EPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVS 131 (439)
Q Consensus 52 ~~~C~yy~rtG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~C~~f~ktG~Ck~G~~CkF~H~~~~~~~~~~v~ 131 (439)
++.|+||.. |++ ..|.|.|+... ..|+|+. .|+. .+|.|.|+..
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~-------------------~~Cr~g~---~C~~-~~C~f~HP~~--------- 52 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH-------------------IMCREGA---NCTR-IDCLFGHPIN--------- 52 (80)
Confidence 468999986 999 99999997532 3699985 7996 7899999832
Q ss_pred ccccCCCCcccccccccccccccCCCCCCCCCCCCCCC
Q 047248 132 LNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPN 169 (439)
Q Consensus 132 ~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp~~~ 169 (439)
..|+|+. .|.+ .+|.|.|+...
T Consensus 53 ------------~~Crf~~---~C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 53 ------------EDCRFGV---NCKN-IYCLFRHPPGR 74 (80)
Confidence 3698876 7999 89999998654
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.95 E-value=5.4e-06 Score=78.94 Aligned_cols=64 Identities=25% Similarity=0.508 Sum_probs=55.8
Q ss_pred CCchHHHHHhhhcCcccccCCCCCCCCCCcCccchhh----cCCCCCCCCCCCCCCCchhhhhhhhhccCCCCCCCCCcc
Q 047248 24 SLNQDALWQMNLRTNEAMESGSLPERPGEPDCSYYIR----TGLCRFGATCRFNHPPNRKLAIATARIKGDYPERVGQPE 99 (439)
Q Consensus 24 ~~~ee~~~~~~l~~~~~~~~~~~p~Rpg~~~C~yy~r----tG~C~~Gd~CkF~H~~~~~~~~~~~~~~~e~Per~~~p~ 99 (439)
++++++|.++.|++++ ..+| ++|.+| + .|.|++++.|...| +
T Consensus 132 ~L~~~eL~~LLLQnDp----~lLP-----eiC~~Y-kG~g~~g~C~~~~~C~kLH------------------------I 177 (229)
T 3u9g_A 132 GLNQEELACLLVQSDP----FFLP-----EICKSY-KGEGRKQTCGQPQPCERLH------------------------I 177 (229)
T ss_dssp TCCHHHHHHHHHTTCG----GGSC-----CBCTTC-CCSSSCCSCSSSSCCCSBC------------------------S
T ss_pred cCCHhHhhheeccCCC----ccCc-----hHHHHh-CCCCCCCcCCCCCCCccee------------------------c
Confidence 5689999999999876 3566 789999 7 36999999999999 7
Q ss_pred ccccccccCCCCCCCCCCCCCCCC
Q 047248 100 CQYYLKTGTCKFGATCKFHHPRDK 123 (439)
Q Consensus 100 C~~f~ktG~Ck~G~~CkF~H~~~~ 123 (439)
|++|++ |.|+| .+|+-+|+...
T Consensus 178 C~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 178 CEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred cchhhc-CCcCC-CCccCccCccC
Confidence 999999 99999 89999999754
No 20
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=7.8e-05 Score=58.72 Aligned_cols=29 Identities=34% Similarity=0.723 Sum_probs=25.1
Q ss_pred CccchhhhhcCCCCCCCCcccCCCCCcCCC
Q 047248 304 QPECQFYMKTGDCKFGAVCRFHHPRERLLP 333 (439)
Q Consensus 304 ~~~C~~y~ktG~C~~G~~Ckf~Hp~~~~~~ 333 (439)
-.+|+.|+ +|.|+||+.|.|+|+.++|..
T Consensus 20 ~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 20 FSICDRYM-NGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CSBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred cccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence 38899995 599999999999999987643
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.00033 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=24.0
Q ss_pred cCccchhhcCCCCCCCCCCCCCCCchhh
Q 047248 53 PDCSYYIRTGLCRFGATCRFNHPPNRKL 80 (439)
Q Consensus 53 ~~C~yy~rtG~C~~Gd~CkF~H~~~~~~ 80 (439)
.+|+.|+ +|.|+||++|.|+|..++..
T Consensus 21 ~LC~~~~-~G~C~~G~~C~FAHG~~ELr 47 (69)
T 2d9m_A 21 SICDRYM-NGTCPEGNSCKFAHGNAELH 47 (69)
T ss_dssp SBCHHHH-HSCCSSCSSCSSBSSHHHHH
T ss_pred ccCcccC-cCCCCCCCccCCcCCHHHHh
Confidence 8999995 59999999999999987653
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.57 E-value=0.0009 Score=49.25 Aligned_cols=31 Identities=29% Similarity=0.665 Sum_probs=27.5
Q ss_pred CCCcCCcccccccCCCCCCCCCCCCCCCCCC
Q 047248 348 PGEPLCIFYSRYGICKFGPSCKFDHPMGIFT 378 (439)
Q Consensus 348 ~~~~~C~~Y~~~G~Ck~G~~CkF~HP~~~~~ 378 (439)
..+.+|..|..+|.|+.|.+|.|.|.++..+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCCC
Confidence 4567999999999999999999999997653
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.78 E-value=0.01 Score=43.62 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCCcCccchhhcCCCCCCCCCCCCCCCch
Q 047248 50 PGEPDCSYYIRTGLCRFGATCRFNHPPNR 78 (439)
Q Consensus 50 pg~~~C~yy~rtG~C~~Gd~CkF~H~~~~ 78 (439)
..+.+|.-|...|.|++|..|.+.|+++-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 35689999999999999999999999863
No 24
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.78 E-value=0.0052 Score=49.73 Aligned_cols=42 Identities=31% Similarity=0.741 Sum_probs=34.7
Q ss_pred CccccccccccCCCCCCCCCCCCCCCCcCccccccccccCCCCcccccccccccccccCCCCCCCCCCCC
Q 047248 97 QPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGQCKFGSTCKFHHP 166 (439)
Q Consensus 97 ~p~C~~f~ktG~Ck~G~~CkF~H~~~~~~~~~~v~~n~~G~P~r~~~~~C~~y~~~G~C~~G~~CkF~Hp 166 (439)
.+.|+||. .|+. ..|.|.|+... ..|+|+. .|++ .+|.|.|+
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~~--------------------~~Cr~g~---~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARSH--------------------IMCREGA---NCTR-IDCLFGHP 50 (80)
Confidence 45799997 6997 99999998542 2699876 8998 88999998
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.77 E-value=0.048 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.682 Sum_probs=22.9
Q ss_pred CcCccchhhcCCCCCCCCCCCCCCCch
Q 047248 52 EPDCSYYIRTGLCRFGATCRFNHPPNR 78 (439)
Q Consensus 52 ~~~C~yy~rtG~C~~Gd~CkF~H~~~~ 78 (439)
..+|.||.| |.|++|+.|.|.|....
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 359999999 99999999999997643
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.65 E-value=0.036 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.751 Sum_probs=22.7
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC
Q 047248 98 PECQYYLKTGTCKFGATCKFHHPRDK 123 (439)
Q Consensus 98 p~C~~f~ktG~Ck~G~~CkF~H~~~~ 123 (439)
-+|.||.| |.|++|++|.|.|....
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCC
Confidence 48999999 99999999999998654
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=61.06 E-value=1.7 Score=41.20 Aligned_cols=25 Identities=32% Similarity=0.943 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCc
Q 047248 143 EIECAYYLRTGQCKFGSTCKFHHPQPNN 170 (439)
Q Consensus 143 ~~~C~~y~~~G~C~~G~~CkF~Hp~~~~ 170 (439)
...|+|-. .|.||.+|||.|+...+
T Consensus 192 ~~~~~~~~---~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 192 KQPCPYGR---KCTYGIKCRFFHPERPS 216 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCc---ccccCCcceecCCccCC
Confidence 45699854 89999999999998764
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=59.28 E-value=1.9 Score=40.86 Aligned_cols=24 Identities=38% Similarity=0.988 Sum_probs=0.0
Q ss_pred CcCccchhhcCCCCCCCCCCCCCCCch
Q 047248 52 EPDCSYYIRTGLCRFGATCRFNHPPNR 78 (439)
Q Consensus 52 ~~~C~yy~rtG~C~~Gd~CkF~H~~~~ 78 (439)
...|.|=.+ |.||.+|||.|+...
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCcc---cccCCcceecCCccC
Confidence 567998755 999999999998643
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=56.32 E-value=7 Score=31.98 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=15.2
Q ss_pred CCCCCCCCc---------ccCCCCCcCCCCCCcccCCCCCCCCCCCcCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 047248 314 GDCKFGAVC---------RFHHPRERLLPVPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYN 380 (439)
Q Consensus 314 G~C~~G~~C---------kf~Hp~~~~~~~~~~~l~~~g~p~r~~~~~C~~Y~~~G~Ck~G~~CkF~HP~~~~~~~ 380 (439)
-.|+||.+| +|.||.+.--.-+...-. ......-.|+||.+|-=..|.-...|+
T Consensus 15 ~~C~yG~~CYRkNp~H~~~fsHP~d~dY~Dp~~~~~-------------~~~~~~p~C~YG~~CYRkNp~H~~ey~ 77 (89)
T 2kqb_A 15 TSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQ-------------DETDDRPECPYGPSCYRKNPQHKIEYR 77 (89)
T ss_dssp EECTTTTCCCCCCTTHHHHEECTTSTTCCCCCCSST-------------TTCCC----------------------
T ss_pred CCCCCCcccccCChHHHhhccCCCcccccCcccccc-------------cCCCCCCCCCCchhhhcCCHHHHHhcc
Confidence 457888888 588888743111110000 011224569999999655554444444
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=37.23 E-value=8.6 Score=31.57 Aligned_cols=9 Identities=33% Similarity=1.265 Sum_probs=7.1
Q ss_pred cCCCCCCCC
Q 047248 107 GTCKFGATC 115 (439)
Q Consensus 107 G~Ck~G~~C 115 (439)
-.|+||.+|
T Consensus 62 p~C~YG~~C 70 (91)
T 2kuo_A 62 PECPYGPSC 70 (91)
T ss_dssp CBCTTGGGC
T ss_pred CCCCCchhh
Confidence 468888888
Done!