BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047252
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
+TCGQV +SLA CI Y+ GG+ CC+G++N+ + T P
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 77 IKEDAASSLPTKCGVQMNIPISRSTNCA 104
+ + A++LP KCGV + IS STNCA
Sbjct: 62 VNPNNAAALPGKCGVSIPYKISASTNCA 89
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
+ CG VD+ + C+SY+ G PS CCDG+KNL N
Sbjct: 1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 77 IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
+ ED A S+P KCGV + IS + +C++
Sbjct: 61 LNEDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 19 CGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPNIK 78
CG VD+ + C+SY+ G PS CCDG+KNL N+
Sbjct: 3 CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN 62
Query: 79 EDAASSLPTKCGVQMNIPISRSTNCAK 105
ED A S+P KCGV + IS + +C++
Sbjct: 63 EDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
+TCGQV++++ C++Y G PSA CC G+++LK T
Sbjct: 1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 77 IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
+ A+S+P+KCGV + IS S +C++
Sbjct: 61 LNAGNAASIPSKCGVSVPYTISASIDCSR 89
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 16 AVTCGQVDASLASCISYLTAGGS-PSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXY 74
A++CGQV +++A CISY GS PSA CC G+++L T
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 75 PNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
+ A+S+P+KCGV + IS ST+C++
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%)
Query: 17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
+TCGQV +LA CI +L GG CC G+KN+ + T
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 77 IKEDAASSLPTKCGVQMNIPISRSTNC 103
I + A +LP KCGV + IS STNC
Sbjct: 61 INPNNAEALPGKCGVNIPYKISTSTNC 87
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 16 AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYP 75
A++CG V + L+ C++YLT G PS CC G+K L T
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 76 NIKEDAASSLPTKCGVQMNIPISRSTNC 103
+ + A++LP KCGV + IS +TNC
Sbjct: 61 KLNTNNAAALPGKCGVNIPYKISTTTNC 88
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
+ CGQVD+ + C++Y+ G PS CC+G+++L + N
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 77 IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
+ + A+S+P+KC V + IS +C++
Sbjct: 61 LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
+ CGQVD+ + C++Y+ G PS CC+G+++L + N
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 77 IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
+ + A+S+P+KC V + IS +C++
Sbjct: 61 LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 16 AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYP 75
A+TCGQV ++LA C++YL G P CC G+K L T
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 76 NIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
I A+ LP+ CGV + IS ST+C+K
Sbjct: 60 GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,406,069
Number of Sequences: 62578
Number of extensions: 61533
Number of successful extensions: 185
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 14
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)