Query 047252
Match_columns 105
No_of_seqs 110 out of 821
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 1.1E-28 2.3E-33 156.7 4.8 88 17-104 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 4.2E-16 9.1E-21 95.7 4.6 66 19-94 1-69 (73)
3 PF14368 LTP_2: Probable lipid 99.6 7.8E-16 1.7E-20 97.7 1.2 67 23-95 23-93 (96)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 8.1E-15 1.8E-19 87.0 2.5 61 26-91 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 7.2E-13 1.6E-17 80.1 4.1 60 24-94 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 2E-10 4.4E-15 69.2 4.2 68 19-95 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 6E-12 1.3E-16 79.2 -4.6 67 24-103 13-90 (90)
8 cd01958 HPS_like HPS_like: Hyd 93.6 0.13 2.9E-06 32.4 3.7 75 19-103 4-85 (85)
9 PF14547 Hydrophob_seed: Hydro 93.1 0.046 9.9E-07 34.5 1.1 71 24-104 7-85 (85)
10 PF05617 Prolamin_like: Prolam 25.8 54 0.0012 18.9 1.7 16 37-52 26-41 (70)
11 PF08094 Toxin_24: Conotoxin T 25.6 19 0.00041 18.3 -0.3 12 38-49 8-19 (33)
12 cd00261 AAI_SS AAI_SS: Alpha-A 24.3 53 0.0012 20.7 1.5 60 24-93 13-104 (110)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.95 E-value=1.1e-28 Score=156.71 Aligned_cols=88 Identities=50% Similarity=1.001 Sum_probs=82.1
Q ss_pred CCchhhhccccccHHHHcCCC-CCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCC
Q 047252 17 VTCGQVDASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNI 95 (105)
Q Consensus 17 ~~C~~~~~~l~~C~~yl~~~~-~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf 95 (105)
++|+.+...|.||++|++|++ .|+++||+++++|++.++|+.|++++|+|+++....+++||++|+++||++||++++|
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 469999999999999999865 7999999999999999999999999999999887777569999999999999999999
Q ss_pred CCCCCccCC
Q 047252 96 PISRSTNCA 104 (105)
Q Consensus 96 ~i~~~~dC~ 104 (105)
||+++|||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.63 E-value=4.2e-16 Score=95.70 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=53.4
Q ss_pred chhhhccccccHHHHcCCC---CCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCC
Q 047252 19 CGQVDASLASCISYLTAGG---SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMN 94 (105)
Q Consensus 19 C~~~~~~l~~C~~yl~~~~---~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p 94 (105)
|+..+..|+||++|+++++ .|+..||+++|+++ + .|+|.+.....++.||.+++++||++||+++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------L--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------c--CCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 5555589999999999765 47889999999842 3 38888765555556999999999999999987
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.56 E-value=7.8e-16 Score=97.67 Aligned_cols=67 Identities=34% Similarity=0.707 Sum_probs=45.6
Q ss_pred hcccccc---HHHHcCCCCCChhhhhhhhhccccCCCcccccccceeecccc-ccCCCCCHHHHhhchhcCCCCCCC
Q 047252 23 DASLASC---ISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAA-ARYPNIKEDAASSLPTKCGVQMNI 95 (105)
Q Consensus 23 ~~~l~~C---~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~-~~~~~in~~~a~~LP~~Cgv~~pf 95 (105)
...|.+| ..|+.++..|++.||+++|++.+ .+..++|+.+++.. ..+ +||.+|+.+||++||++.+.
T Consensus 23 ~~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg~~~~~ 93 (96)
T PF14368_consen 23 ANSLLPCCPCLCYVTGGPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACGVPVPP 93 (96)
T ss_dssp HCCCCHH--HHHHHCC-----HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCTSS-S-
T ss_pred HHHHhccccchhccCCCCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcCCCCCC
Confidence 3357777 78998777899999999999853 35677888777665 344 79999999999999999884
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.51 E-value=8.1e-15 Score=87.00 Aligned_cols=61 Identities=36% Similarity=0.794 Sum_probs=50.8
Q ss_pred ccccHHHHcCC-CCCChhhhhhhhhccccCCCcccccccceeeccccccCCCC-CHHHHhhchhcCCC
Q 047252 26 LASCISYLTAG-GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNI-KEDAASSLPTKCGV 91 (105)
Q Consensus 26 l~~C~~yl~~~-~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv 91 (105)
|.||++|++|+ ..|+++||++++++++. +++++|.++++......++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 67999999987 47899999999998763 6778899888765554344 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.36 E-value=7.2e-13 Score=80.12 Aligned_cols=60 Identities=28% Similarity=0.612 Sum_probs=47.0
Q ss_pred ccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCC-CCCHHHHhhchhcCCCCCC
Q 047252 24 ASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP-NIKEDAASSLPTKCGVQMN 94 (105)
Q Consensus 24 ~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~-~in~~~a~~LP~~Cgv~~p 94 (105)
..|.+|++|++++.+||.+||+.+|+. ..|+|.+.....+. .||.++|++||++||+++|
T Consensus 4 ~~L~~C~~ai~~~~~Ps~~CC~~Lk~~-----------~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGSPPSAACCAKLKEQ-----------QSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCCCCCHHHHHHHhcC-----------CCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence 389999999998888999999999971 24666542222332 4999999999999999885
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.06 E-value=2e-10 Score=69.23 Aligned_cols=68 Identities=43% Similarity=0.832 Sum_probs=51.6
Q ss_pred chhhhccccccHHHHcCC---CCCChhhhhhhhhccccCCCcccccccceeecccc--ccCCC---CCHHHHhhchhcCC
Q 047252 19 CGQVDASLASCISYLTAG---GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAA--ARYPN---IKEDAASSLPTKCG 90 (105)
Q Consensus 19 C~~~~~~l~~C~~yl~~~---~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~--~~~~~---in~~~a~~LP~~Cg 90 (105)
|..+...+.+|.+|+++. ..|+.+||++++.++ ...|+|..... ..+.. ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 566677788999999975 368899999999984 23678765332 22211 59999999999999
Q ss_pred CCCCC
Q 047252 91 VQMNI 95 (105)
Q Consensus 91 v~~pf 95 (105)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99875
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.00 E-value=6e-12 Score=79.17 Aligned_cols=67 Identities=30% Similarity=0.717 Sum_probs=52.1
Q ss_pred ccccccHHHHcCCC-CCChhhhhhhhhccccCCCcccccccceeeccccccC----------CCCCHHHHhhchhcCCCC
Q 047252 24 ASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARY----------PNIKEDAASSLPTKCGVQ 92 (105)
Q Consensus 24 ~~l~~C~~yl~~~~-~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~----------~~in~~~a~~LP~~Cgv~ 92 (105)
..+.+|.+|++++. .|+..||++|++|. +++.|..++...... .+++..+|.+||+.||++
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~ 84 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS 84 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccHHHHhcccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence 45999999999865 57889999999984 356666666544431 258899999999999999
Q ss_pred CCCCCCCCccC
Q 047252 93 MNIPISRSTNC 103 (105)
Q Consensus 93 ~pf~i~~~~dC 103 (105)
++| +||
T Consensus 85 ~~~-----~~C 90 (90)
T PF00234_consen 85 PPY-----TDC 90 (90)
T ss_dssp SSS-----S-G
T ss_pred CCC-----CCC
Confidence 997 666
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=93.56 E-value=0.13 Score=32.43 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=45.5
Q ss_pred chhhhccccccHHHHcC-----CCCCChhhhhhhhhccccCCCcccccccceeeccccccCC-CCCHH-HHhhchhcCCC
Q 047252 19 CGQVDASLASCISYLTA-----GGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP-NIKED-AASSLPTKCGV 91 (105)
Q Consensus 19 C~~~~~~l~~C~~yl~~-----~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~-~in~~-~a~~LP~~Cgv 91 (105)
|-.-...|.-|.+-+.. +.+|..+||.-++.|.+. .-+.|.|-.-.++.++ ++|.. +..-|-..||-
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CGk 77 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCGR 77 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHcC
Confidence 44333467778887743 224557999999998753 2357888643333331 33333 44455567999
Q ss_pred CCCCCCCCCccC
Q 047252 92 QMNIPISRSTNC 103 (105)
Q Consensus 92 ~~pf~i~~~~dC 103 (105)
..| ++|.|
T Consensus 78 ~~P----~gf~C 85 (85)
T cd01958 78 NVP----PGFTC 85 (85)
T ss_pred cCC----CCCcC
Confidence 987 45554
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=93.08 E-value=0.046 Score=34.50 Aligned_cols=71 Identities=27% Similarity=0.519 Sum_probs=45.0
Q ss_pred ccccccHHHHcC-----CCCCChhhhhhhhhccccCCCcccccccceee--ccccccCCCCCHH-HHhhchhcCCCCCCC
Q 047252 24 ASLASCISYLTA-----GGSPSAVCCDGLKNLKTITPPTADRRAACDCV--KAAAARYPNIKED-AASSLPTKCGVQMNI 95 (105)
Q Consensus 24 ~~l~~C~~yl~~-----~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl--~~~~~~~~~in~~-~a~~LP~~Cgv~~pf 95 (105)
..|.-|.+.+.- +.++..+||.-++.|.+. .-+.|.|- |.....+-++|.. .+..|-..||...|
T Consensus 7 lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p- 79 (85)
T PF14547_consen 7 LKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP- 79 (85)
T ss_pred hhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc-
Confidence 377788888821 224567999999998753 23578884 4322221133332 55577788999987
Q ss_pred CCCCCccCC
Q 047252 96 PISRSTNCA 104 (105)
Q Consensus 96 ~i~~~~dC~ 104 (105)
++|.|.
T Consensus 80 ---~gf~C~ 85 (85)
T PF14547_consen 80 ---SGFTCP 85 (85)
T ss_pred ---CCCcCC
Confidence 677763
No 10
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=25.78 E-value=54 Score=18.94 Aligned_cols=16 Identities=13% Similarity=0.547 Sum_probs=13.2
Q ss_pred CCCChhhhhhhhhccc
Q 047252 37 GSPSAVCCDGLKNLKT 52 (105)
Q Consensus 37 ~~P~~~CC~~l~~l~~ 52 (105)
...+++||..+..+.+
T Consensus 26 ~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 26 KNIGPECCKAINKMGK 41 (70)
T ss_pred CCCChHHHHHHHHHhH
Confidence 4788999999998754
No 11
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=25.61 E-value=19 Score=18.31 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=8.4
Q ss_pred CCChhhhhhhhh
Q 047252 38 SPSAVCCDGLKN 49 (105)
Q Consensus 38 ~P~~~CC~~l~~ 49 (105)
.=|+.||.|++-
T Consensus 8 rcpp~ccmgl~c 19 (33)
T PF08094_consen 8 RCPPQCCMGLRC 19 (33)
T ss_dssp SSSSSB-TTEEE
T ss_pred CCCchheeeeee
Confidence 456789999975
No 12
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=24.32 E-value=53 Score=20.67 Aligned_cols=60 Identities=27% Similarity=0.580 Sum_probs=37.3
Q ss_pred ccccccHHHHcC----CCC-----------CChhhhhhhhhccccCCCccccccccee--ecccccc-----------CC
Q 047252 24 ASLASCISYLTA----GGS-----------PSAVCCDGLKNLKTITPPTADRRAACDC--VKAAAAR-----------YP 75 (105)
Q Consensus 24 ~~l~~C~~yl~~----~~~-----------P~~~CC~~l~~l~~~a~t~~~~~~~C~C--l~~~~~~-----------~~ 75 (105)
..|.+|..|+.- .+. ....||.-++.+.. -|+| ++..+.. +.
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~----------qcrC~al~~~~~~~~~~~~~~~~~~~ 82 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPE----------QCRCEALRQMVQGVIQQQQQQQEQQQ 82 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcH----------hhhHHHHHHHHHHHHHhhhccccccC
Confidence 468899999862 111 12489999998753 4555 4322111 11
Q ss_pred ----CCCHHHHhhchhcCCCCC
Q 047252 76 ----NIKEDAASSLPTKCGVQM 93 (105)
Q Consensus 76 ----~in~~~a~~LP~~Cgv~~ 93 (105)
..-...|..||+.||+..
T Consensus 83 ~~~~~~~~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 83 GQEVERMRQAAQNLPSMCNLYP 104 (110)
T ss_pred cChHHHHHHHHHhhchhcCCCC
Confidence 123457889999999986
Done!