Query 047253
Match_columns 679
No_of_seqs 295 out of 1348
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 94.8 0.076 2.6E-06 41.4 6.6 58 71-154 16-73 (76)
2 1wj2_A Probable WRKY transcrip 94.1 0.071 2.4E-06 41.7 5.0 58 71-154 19-76 (78)
3 2rpr_A Flywch-type zinc finger 83.3 1.3 4.3E-05 35.7 4.5 24 123-155 51-74 (87)
4 3j20_Q 30S ribosomal protein S 74.1 2.6 8.9E-05 37.4 3.8 84 165-248 24-149 (158)
5 3kks_A Integrase, IN; beta-str 70.1 9.2 0.00032 33.3 6.8 66 275-350 2-67 (152)
6 3u5c_N S27A, YS15, 40S ribosom 69.8 7.2 0.00024 34.3 5.6 84 165-248 24-142 (151)
7 1ex4_A Integrase; SH3-like dom 66.3 20 0.0007 34.2 9.0 64 276-349 10-73 (239)
8 2xzm_O RPS13E; ribosome, trans 62.7 12 0.00043 32.8 5.6 78 171-248 33-144 (153)
9 1x9b_A Hypothetical membrane p 53.4 9.8 0.00033 26.3 2.7 44 390-433 8-51 (53)
10 3hot_A Transposable element ma 51.7 24 0.00082 35.7 6.9 57 287-346 185-252 (345)
11 1je8_A Nitrate/nitrite respons 51.7 39 0.0013 26.2 6.6 73 149-235 4-76 (82)
12 1cxq_A Avian sarcoma virus int 50.0 41 0.0014 29.5 7.5 70 276-350 12-81 (162)
13 3hph_A Integrase, IN; protein- 49.2 28 0.00095 32.6 6.4 66 276-351 61-126 (219)
14 2lju_A Putative oxidoreductase 45.9 21 0.0007 29.7 4.1 34 42-79 54-87 (108)
15 1c0m_A Protein (integrase); HI 42.7 52 0.0018 31.2 7.4 70 276-350 11-80 (238)
16 2x78_A Integrase; viral protei 38.8 60 0.002 29.5 6.9 69 276-350 14-83 (200)
17 1tc3_C Protein (TC3 transposas 38.2 50 0.0017 21.8 4.8 43 167-220 4-46 (51)
18 3l3u_A POL polyprotein; DNA in 37.0 58 0.002 28.5 6.2 64 275-348 9-72 (163)
19 1bco_A MUA domain II, bacterio 32.4 68 0.0023 32.2 6.5 71 275-348 16-94 (327)
20 2l69_A Rossmann 2X3 fold prote 29.7 36 0.0012 27.0 2.9 29 53-81 7-35 (134)
21 2jya_A AGR_C_3324P, uncharacte 29.6 20 0.00068 29.7 1.5 32 44-79 48-79 (106)
22 3f2k_A Histone-lysine N-methyl 25.8 2.2E+02 0.0076 26.5 8.6 63 284-349 64-136 (226)
23 3av9_A Integrase, IN; protein- 24.4 1.2E+02 0.004 27.2 6.0 65 276-350 30-94 (183)
24 2l0z_A Glycoprotein G2; zinc-b 23.2 22 0.00076 23.6 0.5 16 562-577 20-35 (42)
25 3ulq_B Transcriptional regulat 21.8 1.7E+02 0.0059 22.9 5.8 58 166-235 27-84 (90)
26 1c6v_A Protein (SIV integrase) 20.0 1.7E+02 0.0059 25.0 6.2 62 276-347 10-71 (164)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=94.78 E-value=0.076 Score=41.36 Aligned_cols=58 Identities=19% Similarity=0.503 Sum_probs=40.1
Q ss_pred cCceEEEcceecccCCCcceEEEEEeeccCCCCCccCCCCCCCCCCCCccccCccceEEEEEeecCCCCcEEEEecCCCC
Q 047253 71 CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFANNH 150 (679)
Q Consensus 71 ~GF~ir~~~s~~~~~~~k~~~~~~f~C~r~G~~~~k~~~~~~~~r~~~s~r~gCpa~i~v~~~~~~~~~~w~V~~~~~~H 150 (679)
-||..|+--.+.-++. ..-+.+|.|+ ..||||+=.|.+.. .+....++....+|
T Consensus 16 DGy~WRKYGQK~ikgs--~~PRsYYrCt----------------------~~gC~a~K~Ver~~--~d~~~~~~tY~G~H 69 (76)
T 2ayd_A 16 DGYRWRKYGQKSVKGS--PYPRSYYRCS----------------------SPGCPVKKHVERSS--HDTKLLITTYEGKH 69 (76)
T ss_dssp CSSCEEEEEEECCTTC--SSCEEEEEEC----------------------STTCCCEEEEEECS--SSTTEEEEEEESCC
T ss_pred CCchhhhCcccccCCC--CCceeEeEcC----------------------CCCCCceeeEEEEC--CCCCEEEEEEccCc
Confidence 4777777544333322 3346678884 23799998888864 35678888889999
Q ss_pred CCCC
Q 047253 151 NHEL 154 (679)
Q Consensus 151 NH~l 154 (679)
||++
T Consensus 70 ~H~~ 73 (76)
T 2ayd_A 70 DHDM 73 (76)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9997
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=94.07 E-value=0.071 Score=41.68 Aligned_cols=58 Identities=26% Similarity=0.521 Sum_probs=39.8
Q ss_pred cCceEEEcceecccCCCcceEEEEEeeccCCCCCccCCCCCCCCCCCCccccCccceEEEEEeecCCCCcEEEEecCCCC
Q 047253 71 CGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAYMRISKVTELGAPEWRVTGFANNH 150 (679)
Q Consensus 71 ~GF~ir~~~s~~~~~~~k~~~~~~f~C~r~G~~~~k~~~~~~~~r~~~s~r~gCpa~i~v~~~~~~~~~~w~V~~~~~~H 150 (679)
-||.+|+--.+.-++. ..-+.+|.|+. .||||+=.|.+.. .+....++....+|
T Consensus 19 DGy~WRKYGQK~ikgs--~~PRsYYrCt~----------------------~gC~a~K~Ver~~--~d~~~~~~tY~G~H 72 (78)
T 1wj2_A 19 DGYRWRKYGQKVVKGN--PYPRSYYKCTT----------------------PGCGVRKHVERAA--TDPKAVVTTYEGKH 72 (78)
T ss_dssp SSSCBCCCEEECCTTC--SSCEEEEEEEC----------------------SSCEEEEEEEEET--TTTSEEEEEEESCC
T ss_pred CCchhhhCcccccCCC--cCeeEEeecCc----------------------CCCCcEeeEEEEc--CCCCEEEEEEeeEc
Confidence 4677666443333322 34467888852 3699999898864 35667888889999
Q ss_pred CCCC
Q 047253 151 NHEL 154 (679)
Q Consensus 151 NH~l 154 (679)
||++
T Consensus 73 ~H~~ 76 (78)
T 1wj2_A 73 NHDL 76 (78)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9987
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=83.27 E-value=1.3 Score=35.68 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=16.1
Q ss_pred CccceEEEEEeecCCCCcEEEEecCCCCCCCCC
Q 047253 123 GCQAYMRISKVTELGAPEWRVTGFANNHNHELL 155 (679)
Q Consensus 123 gCpa~i~v~~~~~~~~~~w~V~~~~~~HNH~l~ 155 (679)
+|+|++.... +. |. ....||||+.
T Consensus 51 kCrARi~T~~------~~--~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 51 GCRSRAITQG------HR--IM-VMRSHCHQPD 74 (87)
T ss_dssp CCCCEEEEET------TE--EE-ECSCCSSCCC
T ss_pred CCCEEEEEcC------CC--EE-CCCCcCCCCc
Confidence 7999987532 22 22 4577999873
No 4
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.10 E-value=2.6 Score=37.43 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=56.0
Q ss_pred cccCCC-hhhHHHHHHHhhcCCCHHHHHHHHHHhhcCCCC-----------------------CCCcchhhhhhHHHhhh
Q 047253 165 AYRTIS-ETDKSRILMFAKTGISVQQMMRLMELEKCVEPG-----------------------YLPFTEKDVRNLLQSIR 220 (679)
Q Consensus 165 s~R~i~-~~~k~~i~~l~~~gi~~~~i~~~l~~~~g~~~~-----------------------~~~~~~~dv~N~~~~~r 220 (679)
++-+++ ++..+.|..|.+.|.+|++|--+|+.++|+..- -.+-...|++++..++.
T Consensus 24 ~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~iLk~~gl~p~iPEDL~~Lt~RI~ 103 (158)
T 3j20_Q 24 IWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAV 103 (158)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHHHHHHHTCSCSSCHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 333344 456677888999999999999999998886311 01223467888766554
Q ss_pred cc------------------CCcchHHHHHHHHHhhccCCCCcEEE
Q 047253 221 KL------------------DPEDESVDLLRMCRNIKEKDPNFRYE 248 (679)
Q Consensus 221 ~~------------------~~~~d~~~ll~~~~~~~~~np~~~~~ 248 (679)
.. ...+--..|++|+++...--|+|.|.
T Consensus 104 ~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~Y~ 149 (158)
T 3j20_Q 104 NLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYD 149 (158)
T ss_dssp HHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCC
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEC
Confidence 21 01234567899998877777787775
No 5
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=70.05 E-value=9.2 Score=33.26 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=46.6
Q ss_pred CcEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHHH
Q 047253 275 GDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKE 350 (679)
Q Consensus 275 ~dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~~ 350 (679)
.+++.+|.|+..+ .+.++.+|..-+.+ +++.+ .+++.+...-+|..+....+ |++|.||+......
T Consensus 2 n~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 2 SHLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CCEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred CcEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 3678899998743 26677788876655 45544 47777777666666555554 99999999988764
No 6
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=69.83 E-value=7.2 Score=34.25 Aligned_cols=84 Identities=27% Similarity=0.389 Sum_probs=55.8
Q ss_pred cccCCC-hhhHHHHHHHhhcCCCHHHHHHHHHHhhcCCC----------------CCCCcchhhhhhHHHhh---hcc--
Q 047253 165 AYRTIS-ETDKSRILMFAKTGISVQQMMRLMELEKCVEP----------------GYLPFTEKDVRNLLQSI---RKL-- 222 (679)
Q Consensus 165 s~R~i~-~~~k~~i~~l~~~gi~~~~i~~~l~~~~g~~~----------------~~~~~~~~dv~N~~~~~---r~~-- 222 (679)
++-+++ ++..+.|..|.+.|.+|++|--+|+.++|+.. +-.+-...|++|++.+. |+-
T Consensus 24 ~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lrkHLe 103 (151)
T 3u5c_N 24 AWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLE 103 (151)
T ss_dssp SSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 333344 45667788899999999999999999998631 11233457888886553 211
Q ss_pred -------------CCcchHHHHHHHHHhhccCCCCcEEE
Q 047253 223 -------------DPEDESVDLLRMCRNIKEKDPNFRYE 248 (679)
Q Consensus 223 -------------~~~~d~~~ll~~~~~~~~~np~~~~~ 248 (679)
..++-...|..|.+....--|+|.|+
T Consensus 104 ~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~WkY~ 142 (151)
T 3u5c_N 104 RNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYE 142 (151)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCC
T ss_pred HccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCC
Confidence 01223456777888887777887765
No 7
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=66.35 E-value=20 Score=34.18 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=36.8
Q ss_pred cEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHH
Q 047253 276 DAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLK 349 (679)
Q Consensus 276 dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~ 349 (679)
.++.+|.|+..++ +.++.+|..- ..++++.+- +++.....-++..+... ..|++|.||+.....
T Consensus 10 ~~w~~D~t~~~g~-----~~l~~vD~~S-r~i~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 10 GIWQLDCTHLEGK-----VILVAVHVAS-GYIEAEVIP-AETGQETAYFLLKLAGR---WPVKTIHTDNGSNFT 73 (239)
T ss_dssp GEEEEEEEEETTE-----EEEEEECTTT-CCEEEECCS-SSSTTHHHHHHHHHHHH---SCCCEEEECCCHHHH
T ss_pred CEEEEeccccCCe-----EEEEEEECCC-CeEEEEEeC-CCCHHHHHHHHHHHHHh---cCCcEEEecCcHHHH
Confidence 5788899988332 3445555554 445666544 45554444333332222 246899999987754
No 8
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=62.67 E-value=12 Score=32.78 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=53.5
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHhhcCCC----------------CCCCcchhhhhhHHHhh---hcc---C-----
Q 047253 171 ETDKSRILMFAKTGISVQQMMRLMELEKCVEP----------------GYLPFTEKDVRNLLQSI---RKL---D----- 223 (679)
Q Consensus 171 ~~~k~~i~~l~~~gi~~~~i~~~l~~~~g~~~----------------~~~~~~~~dv~N~~~~~---r~~---~----- 223 (679)
++..+.|..|.+.|.+|++|--+|+.++|+.. +-.+-...|++|++.+. |+- .
T Consensus 33 eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lRkHLe~n~kD~~ 112 (153)
T 2xzm_O 33 STVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKD 112 (153)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHcccchh
Confidence 45667788899999999999999999888631 11233557888886652 321 0
Q ss_pred -------CcchHHHHHHHHHhhccCCCCcEEE
Q 047253 224 -------PEDESVDLLRMCRNIKEKDPNFRYE 248 (679)
Q Consensus 224 -------~~~d~~~ll~~~~~~~~~np~~~~~ 248 (679)
.+.-...|..|.+....--|+|.|+
T Consensus 113 sK~~L~LiESkI~RL~rYYk~~~~LP~~WkY~ 144 (153)
T 2xzm_O 113 SKYRLILVESRIHRLSRYYKLNQKLPPKWKYN 144 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCC
Confidence 1223446777888877777887764
No 9
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=53.37 E-value=9.8 Score=26.31 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=34.0
Q ss_pred HHhhhccCCCHHHHHHHHHHhHhhcCCCccHHHHHHHHhhcccc
Q 047253 390 EFYRLYNLESIEDFEMGWRDMVNSFGLHTNRHIANLFALRMQWA 433 (679)
Q Consensus 390 ~~~~~~~~~t~~eF~~~w~~l~~~~~~~~~~~l~~~~~~re~W~ 433 (679)
.|..++++++..+|.....+|...-.--+..|...+-+.+++|-
T Consensus 8 ~Fe~~InS~SK~~Fv~nL~ELE~is~rlg~~Y~~~LeeaK~kWk 51 (53)
T 1x9b_A 8 KFESMINSPSKSVFVRNLNELEALAVRLGKSYRIQLDQAKEKWK 51 (53)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHHHHhCCccHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence 57788999999999999988865322224578888888888884
No 10
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=51.72 E-value=24 Score=35.68 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=35.6
Q ss_pred CCCCCcceEEEEEecCCcceeeeecccc---ccchhhHHHHHHHHHHHhc----C----CCCceecccccH
Q 047253 287 TALDMPLGIWVGVNNYGVPCFFGCTLLR---EENLRSFSWALKAFLAFMD----G----KAPQTILTDQNM 346 (679)
Q Consensus 287 n~y~~pl~~~~gvd~~~~~~~~~~al~~---~E~~es~~w~l~~f~~~~~----~----~~p~~iitD~~~ 346 (679)
+..+.-++...+++..| ++++.++. .-+.+.|.-+|+.++..+. . ..+.+|+.|...
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 34555666677777776 45666665 4567778777777655432 1 234578899755
No 11
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.71 E-value=39 Score=26.19 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=38.1
Q ss_pred CCCCCCCCCCccCCCccccCCChhhHHHHHHHhhcCCCHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHhhhccCCcchH
Q 047253 149 NHNHELLEPNQVRFLPAYRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDES 228 (679)
Q Consensus 149 ~HNH~l~~~~~~~~l~s~R~i~~~~k~~i~~l~~~gi~~~~i~~~l~~~~g~~~~~~~~~~~dv~N~~~~~r~~~~~~d~ 228 (679)
.|+|++..+.. ....-..|++.++..+.. .-.|.+.++|.+.+. ++...|++.+.+.++.......
T Consensus 4 ~~~~~~~~~~~--~~~~~~~Lt~~e~~vl~l-~~~g~s~~eIA~~l~-----------is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 4 SHHHHHHGSAT--TERDVNQLTPRERDILKL-IAQGLPNKMIARRLD-----------ITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp ---------------CCGGGSCHHHHHHHHH-HTTTCCHHHHHHHHT-----------SCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCCCCCchH--HHHHHccCCHHHHHHHHH-HHcCCCHHHHHHHHC-----------cCHHHHHHHHHHHHHHHcCCCH
Confidence 56666644332 233446688888876665 478999999988773 3566677776666544333333
Q ss_pred HHHHHHH
Q 047253 229 VDLLRMC 235 (679)
Q Consensus 229 ~~ll~~~ 235 (679)
..++.+.
T Consensus 70 ~~l~~~a 76 (82)
T 1je8_A 70 VEAAVWV 76 (82)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 12
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=50.04 E-value=41 Score=29.53 Aligned_cols=70 Identities=14% Similarity=0.035 Sum_probs=46.1
Q ss_pred cEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHHH
Q 047253 276 DAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKE 350 (679)
Q Consensus 276 dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~~ 350 (679)
+++.+|.|+..... +-.+.++.+|..-..+ +|+.+- +.+.+...-+|+......+ .|.+|.||+.....+
T Consensus 12 ~~~~~D~~~~~~~~-g~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 12 QIWQTDFTLEPRMA-PRSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CEEEEEEEECGGGT-TSCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CEEEeeeeecccCC-CCEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 57788888754332 3356677788876554 556554 6777766666655555443 588999999988753
No 13
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=49.19 E-value=28 Score=32.56 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=44.6
Q ss_pred cEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHHHH
Q 047253 276 DAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKEA 351 (679)
Q Consensus 276 dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~~A 351 (679)
+++.+|.|+..++ +.++.+|..-.-+ +++. +.+.+.+...-++..+....| |++|.||+.....+.
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5666888765443 5677788877765 4444 556666666666655555554 999999999887643
No 14
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=45.91 E-value=21 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHHhcCceEEEcc
Q 047253 42 STNDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHR 79 (679)
Q Consensus 42 ~~~~~~P~vGm~F~S~eea~~fy~~yA~~~GF~ir~~~ 79 (679)
+..+..-.+.+.|+|.|+|..| |.++|....+..
T Consensus 54 sS~D~~~qv~L~F~skE~Aiay----Aek~G~~y~V~e 87 (108)
T 2lju_A 54 GSHDTKQQVCLSFTTRELAIAY----AVAHKIDYTVLQ 87 (108)
T ss_dssp SSCCCCCCSCEEESSHHHHHHH----HHHTTCEEEEEC
T ss_pred CCCCccccceEecCCHHHHHHH----HHHcCCEEEEec
Confidence 4444556688999999999865 999998877654
No 15
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=42.69 E-value=52 Score=31.21 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=48.0
Q ss_pred cEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHHH
Q 047253 276 DAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKE 350 (679)
Q Consensus 276 dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~~ 350 (679)
+++.+|.||..... .-.+.++.+|..-.. ++|+.+- +++.+...-+|+......+ .|.+|.||+.....+
T Consensus 11 ~~w~~D~~~~~~~~-g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 11 QIWQTDFTLEPRMA-PRSWLAVTVDTASSA-IVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp SEEEEEEEECGGGC-SSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHS
T ss_pred CEEEEeeccccccC-CCEEEEEEEECCCCC-EEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCcccc
Confidence 67888988865332 235667777776554 4566654 7777777777766655554 488999999888653
No 16
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=38.81 E-value=60 Score=29.54 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=44.5
Q ss_pred cEEEEcc-cccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHHH
Q 047253 276 DAVVFDT-THRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKE 350 (679)
Q Consensus 276 dvl~~D~-Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~~ 350 (679)
+++.+|. ++.... ++..+.++.+|..-..+ +++.+ .+.+.+...-+| ..+.....|++|.||+.....+
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l---~~~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATVKSL---NVLTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHH---HHHTTTCCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHHHHH---HHHHHhCCCcEEEecCCcceeh
Confidence 6788887 554433 44667778888876654 45555 666666554444 3333335789999999887654
No 17
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.19 E-value=50 Score=21.83 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=30.5
Q ss_pred cCCChhhHHHHHHHhhcCCCHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHhhh
Q 047253 167 RTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIR 220 (679)
Q Consensus 167 R~i~~~~k~~i~~l~~~gi~~~~i~~~l~~~~g~~~~~~~~~~~dv~N~~~~~r 220 (679)
+.++++++..|..+...|.+..+|...+. +....|++++...+
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lg-----------is~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKIS-----------RSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHT-----------CCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHC-----------cCHHHHHHHHhhHH
Confidence 35778888888888888999988877652 35566666665443
No 18
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=36.98 E-value=58 Score=28.46 Aligned_cols=64 Identities=17% Similarity=0.027 Sum_probs=43.0
Q ss_pred CcEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHH
Q 047253 275 GDAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCL 348 (679)
Q Consensus 275 ~dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~ 348 (679)
.+++.+|.||..++ +.++.+|....-+ +++.+ .+++.+...-++..+....+ +++|.||+....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f 72 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNF 72 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhh
Confidence 36788999987543 5777888877655 55544 56677776666655544443 578999987653
No 19
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=32.37 E-value=68 Score=32.20 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=47.7
Q ss_pred CcEEEEcccccCCC----CCC--cceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCc--eecccccH
Q 047253 275 GDAVVFDTTHRLTA----LDM--PLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQ--TILTDQNM 346 (679)
Q Consensus 275 ~dvl~~D~Ty~tn~----y~~--pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~--~iitD~~~ 346 (679)
++++.+|.|+..-. .+. -....+.+|..-. .++|+.+...++.++..-+|.......+ .|. .|.+|+-.
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 46788888865432 121 2455666776655 4578888888988888777766555443 577 89999876
Q ss_pred HH
Q 047253 347 CL 348 (679)
Q Consensus 347 ~~ 348 (679)
..
T Consensus 93 ~f 94 (327)
T 1bco_A 93 GA 94 (327)
T ss_dssp ST
T ss_pred hh
Confidence 54
No 20
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.73 E-value=36 Score=27.00 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=25.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCceEEEccee
Q 047253 53 RFPTHDAAYEYYSEFAKSCGFSIRRHRTE 81 (679)
Q Consensus 53 ~F~S~eea~~fy~~yA~~~GF~ir~~~s~ 81 (679)
+|.+.+|...-+...-+++||.+|.-+|-
T Consensus 7 vfstdeetlrkfkdiikkngfkvrtvrsp 35 (134)
T 2l69_A 7 VFSTDEETLRKFKDIIKKNGFKVRTVRSP 35 (134)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHhcCceEEEecCH
Confidence 68888999999999999999999987763
No 21
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=29.62 E-value=20 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhcCceEEEcc
Q 047253 44 NDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHR 79 (679)
Q Consensus 44 ~~~~P~vGm~F~S~eea~~fy~~yA~~~GF~ir~~~ 79 (679)
.+..-.+.+.|+|.|+|..| |.++|....+..
T Consensus 48 ~D~~~qv~L~F~skE~Aiay----Aek~G~~y~V~e 79 (106)
T 2jya_A 48 SDMKQQVKLTFETQEQAEAY----AQRKGIEYRVIL 79 (106)
T ss_dssp CCSEEEEEEEESSHHHHHHH----HHHHTCEEEECC
T ss_pred CCccccceEecCCHHHHHHH----HHHcCCEEEEeC
Confidence 33444578899999999865 999998887754
No 22
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=25.85 E-value=2.2e+02 Score=26.53 Aligned_cols=63 Identities=6% Similarity=0.020 Sum_probs=36.2
Q ss_pred ccCCCCCCcceEEEEEecCCcceeeeecccc---ccchhhHHHHHHHHHHHh----c---CCCCceecccccHHHH
Q 047253 284 HRLTALDMPLGIWVGVNNYGVPCFFGCTLLR---EENLRSFSWALKAFLAFM----D---GKAPQTILTDQNMCLK 349 (679)
Q Consensus 284 y~tn~y~~pl~~~~gvd~~~~~~~~~~al~~---~E~~es~~w~l~~f~~~~----~---~~~p~~iitD~~~~~~ 349 (679)
-.+++++.-+.+.++++..|...+ .++. .=+.+.|.-+++.+...+ + ...+.+++-|....-.
T Consensus 64 ~~~~~~~~~vmv~~~~s~~G~~~~---~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~ 136 (226)
T 3f2k_A 64 PKPILHPKKVMVTIWWSAAGLIHY---SFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHV 136 (226)
T ss_dssp -----CCCEEEEEEEEETTEEEEE---EECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHH
T ss_pred cccccCCcceEEEEEeecCCcEEE---EEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccch
Confidence 345667778888888888876543 3443 456677777776654332 1 2344577788876543
No 23
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=24.37 E-value=1.2e+02 Score=27.22 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=36.8
Q ss_pred cEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHHHHH
Q 047253 276 DAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMCLKE 350 (679)
Q Consensus 276 dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~~~~ 350 (679)
+++.+|.|+..++ +.++.+|..-.. ++|+.+ .+.+.....-++..+.... .+++|.||+.....+
T Consensus 30 ~~w~~D~~~~~g~-----~~l~~vD~~Sr~-~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~ef~s 94 (183)
T 3av9_A 30 GIWQLDCTHLEGK-----VILVAVHVASGY-IEAEVI-PAETGQETAYFLLKLAGRW---PVKTVHTDNGSNFTS 94 (183)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTTE-EEEEEE-SSCCHHHHHHHHHHHHHHS---CCCEEECSSHHHHHC
T ss_pred CEEEEeccccCCc-----EEEEEEECCCCC-EEEEEe-CCccchHHHHHHHHHHHHc---CCcEEEecCchhcch
Confidence 5677777776332 234555655544 466654 4455554443333333333 358999999887653
No 24
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=23.23 E-value=22 Score=23.61 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=12.6
Q ss_pred CeEEEeccCccccCcc
Q 047253 562 GIISCSCHQFEFSGIL 577 (679)
Q Consensus 562 ~~~~CsC~~f~~~Gip 577 (679)
....|+|++|..-|.|
T Consensus 20 ~~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 20 SLGGCRCGKYPNLKKP 35 (42)
T ss_dssp TTSSBTTTTBCCCCCC
T ss_pred CCceeccccccCCCCc
Confidence 3567999999888766
No 25
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.79 E-value=1.7e+02 Score=22.92 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=37.2
Q ss_pred ccCCChhhHHHHHHHhhcCCCHHHHHHHHHHhhcCCCCCCCcchhhhhhHHHhhhccCCcchHHHHHHHH
Q 047253 166 YRTISETDKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSIRKLDPEDESVDLLRMC 235 (679)
Q Consensus 166 ~R~i~~~~k~~i~~l~~~gi~~~~i~~~l~~~~g~~~~~~~~~~~dv~N~~~~~r~~~~~~d~~~ll~~~ 235 (679)
...|++.++..+..+. .|.+.++|...|. ++.+.|++++.+..+...-.+...++.+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G~s~~eIA~~L~-----------iS~~TV~~~~~~i~~Klgv~~r~~lv~~a 84 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KGFTNQEIADALH-----------LSKRSIEYSLTSIFNKLNVGSRTEAVLIA 84 (90)
T ss_dssp --CCCHHHHHHHHHHH-TTCCHHHHHHHHT-----------CCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH-cCCCHHHHHHHHC-----------cCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3457777776555444 9999999988763 46778888877776544444444555444
No 26
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=20.04 E-value=1.7e+02 Score=24.95 Aligned_cols=62 Identities=16% Similarity=0.000 Sum_probs=35.6
Q ss_pred cEEEEcccccCCCCCCcceEEEEEecCCcceeeeeccccccchhhHHHHHHHHHHHhcCCCCceecccccHH
Q 047253 276 DAVVFDTTHRLTALDMPLGIWVGVNNYGVPCFFGCTLLREENLRSFSWALKAFLAFMDGKAPQTILTDQNMC 347 (679)
Q Consensus 276 dvl~~D~Ty~tn~y~~pl~~~~gvd~~~~~~~~~~al~~~E~~es~~w~l~~f~~~~~~~~p~~iitD~~~~ 347 (679)
+++.+|.|+..+ . +.++.+|..-+. ++++.+ .+.+.+.+.-++..+ .....|++|.+|+...
T Consensus 10 ~~w~~D~~~~~g----~-~~l~~iD~~Sr~-~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~i~sDnG~~ 71 (164)
T 1c6v_A 10 GTWQMDCTHLEG----K-IVIVAVHVASGF-IEAEVI-PQETGRQTALFLLKL---AGRWPITHLHTDNGAN 71 (164)
T ss_dssp TEEEEEEEEETT----E-EEEEEECTTSCC-EEEEEC-SSCSHHHHHHHHHHH---HTTSCCCEEECCCCSS
T ss_pred CEEEEeecccCC----E-EEEEEEEccCCE-EEEEEc-CCCchHHHHHHHHHH---HHhcCCCEEEeCCchh
Confidence 567788888722 2 344447776554 455544 455555554443333 3233479999998654
Done!