BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047254
(836 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P6I|A Chain A, Crystal Structure Of Symfoil-4t Permutation #2: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
Length = 142
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 90 GKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDS 149
G V G +R H IQ +++P + +V LK E ++ R GT++ SD+
Sbjct: 17 GGTVDGTRDRSDTH---IQFQISP--EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDT 71
Query: 150 HMQSNIEDEVNEQ------EKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLL 203
H+Q I E N + E R+N D + G R R + + F ++SP + E LL
Sbjct: 72 HIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG-TRDRSDTHIQF-QISPEGNGEVLL 129
Query: 204 NST 206
ST
Sbjct: 130 KST 132
>pdb|3P6J|A Chain A, Crystal Structure Of Symfoil-4t Permutation #3: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
Length = 142
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 100 FKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEV 159
+K+ IQ +++P + +V LK E ++ R GT++ SD+H+Q I E
Sbjct: 14 YKKGDTHIQFQISP--EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEG 71
Query: 160 NEQ------EKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNST 206
N + E R+N D + G R R + + F ++SP + E LL ST
Sbjct: 72 NGEVLLKSTETGQYLRINPDGTVDG-TRDRSDTHIQF-QISPEGNGEVLLKST 122
>pdb|3SNV|A Chain A, Crystal Structure Of Symfoil-4t Permutation #1: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
pdb|3SNV|B Chain B, Crystal Structure Of Symfoil-4t Permutation #1: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
Length = 143
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 93 VSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQ 152
V G +R H IQ +++P + +V LK E ++ R GT++ SD+H+Q
Sbjct: 30 VDGTRDRSDTH---IQFQISP--EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQ 84
Query: 153 SNIEDEVNEQ------EKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNST 206
I E N + E R+N D + G R R + + F ++SP + E LL ST
Sbjct: 85 FQISPEGNGEVLLKSTETGQYLRINPDGTVDG-TRDRSDTHIQF-QISPEGNGEVLLKST 142
>pdb|2HGS|A Chain A, Human Glutathione Synthetase
Length = 474
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 630 AMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCS---S 686
A+ QI + T A FG +++RT PA +H +S L + A +ILS S +
Sbjct: 139 ALKQI-EINTISASFG---GLASRT---PAV--HRHVLSVLSKTKEAGKILSNNPSKGLA 189
Query: 687 IGCEHKWSIYDQVHGQRHSRAAQKRIN--DLIYVHYNLRLRECHIKRRSDDSISLEGAL 743
+G W +Y + A +K N D + L R H+ RR+ + IS +G+L
Sbjct: 190 LGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLARNIHVIRRTFEDISEKGSL 248
>pdb|3O4B|A Chain A, Crystal Structure Of Symfoil-4t: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 113 PCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQ------EKDA 166
P + + V LK E ++ R GT++ SD+H+Q I E N + E
Sbjct: 10 PPGNYKKPVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQ 69
Query: 167 LHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNST 206
R+N D + G R R + + F ++SP + E LL ST
Sbjct: 70 YLRINPDGTVDG-TRDRSDTHIQF-QISPEGNGEVLLKST 107
>pdb|3O4C|A Chain A, Crystal Structure Of Symfoil-4v: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 113 PCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQ------EKDA 166
P + + V LK E ++ R GT++ SD H+Q I E N + E
Sbjct: 10 PPGNYKKPVLLKSTETGQYLRINPDGTVDGTRDRSDVHIQFQISPEGNGEVLLKSTETGQ 69
Query: 167 LHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNST 206
R+N D + G R R ++ + F ++SP + E LL ST
Sbjct: 70 YLRINPDGTVDG-TRDRSDVHIQF-QISPEGNGEVLLKST 107
>pdb|1XW2|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
pdb|1XWQ|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
Length = 405
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 520 VVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKL--AIQSFHGDDVRKYGPFWNV 573
+ + VN + + Q L PY N +Y+A AI GDD+R G W +
Sbjct: 29 IQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTQGQSWGM 84
>pdb|1H12|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
pdb|1H13|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
Length = 405
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 520 VVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKL--AIQSFHGDDVRKYGPFWNV 573
+ + VN + + Q L PY N +Y+A AI GDD+R G W +
Sbjct: 29 IQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQSWGM 84
>pdb|1XWT|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
Length = 405
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 520 VVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKL--AIQSFHGDDVRKYGPFWNV 573
+ + VN + + Q L PY N +Y+A AI GDD+R G W +
Sbjct: 29 IQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQSWGM 84
>pdb|1H14|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
Length = 405
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 520 VVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKL--AIQSFHGDDVRKYGPFWNV 573
+ + VN + + Q L PY N +Y+A AI GDD+R G W +
Sbjct: 29 IQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQSWGM 84
>pdb|2A8Z|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
pdb|2B4F|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase In Complex
With Substrate
Length = 405
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 520 VVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKL--AIQSFHGDDVRKYGPFWNV 573
+ + VN + + Q L PY N +Y+A AI GDD+R G W +
Sbjct: 29 IQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQSWGM 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,633,703
Number of Sequences: 62578
Number of extensions: 1009803
Number of successful extensions: 2273
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2268
Number of HSP's gapped (non-prelim): 17
length of query: 836
length of database: 14,973,337
effective HSP length: 107
effective length of query: 729
effective length of database: 8,277,491
effective search space: 6034290939
effective search space used: 6034290939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)