BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047254
(836 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4QLF8|MURG_HAEI8 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Haemophilus influenzae (strain 86-028NP)
GN=murG PE=3 SV=1
Length = 351
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 268 LELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWA-VTGCSVMADSWTDSES 326
LEL Q G+G V SQL +L Q +I +N+AE A WA V C A + + +
Sbjct: 210 LELRHQVGKGAVEEVSQLYGENLEQVKITEFIDNMAEAYA-WADVVICRSGALTVCEIAA 268
Query: 327 RTLINLFVSSPH-------GLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQV-I 378
+ +FV H +LS VDA I+E A ++L ++ + EN++Q+ +
Sbjct: 269 VGVAAIFVPFQHKDRQQYLNAKYLSDVDAAKIIEQADLTPEMLVNYLKNLTRENLLQMAL 328
Query: 379 TQNTPSYKSAGKMLEE 394
T S +A + + E
Sbjct: 329 KAKTMSMPNAAQRVAE 344
>sp|B2DCR8|CTX_SEPES SE-cephalotoxin OS=Sepia esculenta PE=1 SV=1
Length = 1052
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 436 IYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWF 495
IY H+R + F QG +L++ + ++ L+ I +R M+QS +W
Sbjct: 245 IYMHVRRI------FYQGTQLVLAYNSFKQMDPPEMKKYLNALIFIRNMYQSRVWHCKET 298
Query: 496 SKSDKGKEVENIV-LNAKFWKKVLYVVRSVN 525
+ + K++++IV NAKF + V+R +N
Sbjct: 299 TIAQSKKDIKDIVKTNAKF--GITTVLRKIN 327
>sp|P13535|MYH8_HUMAN Myosin-8 OS=Homo sapiens GN=MYH8 PE=1 SV=3
Length = 1937
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 365 VVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWK 424
++EEM +E + Q+IT+ + G ++ + + + A +CI + F+N+K W
Sbjct: 775 LLEEMRDEKLAQIITRTQAVCR--GFLMRVEYQKMLQRREALFCIQYNVRAFMNVKH-WP 831
Query: 425 CMEMAQKITKFIYNHI--RLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLR 482
M++ KI + + + + MK+EF + ++ L S + + LL + DL+
Sbjct: 832 WMKLFFKIKPLLKSAETEKEMATMKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQ 891
Query: 483 RMFQSE 488
QSE
Sbjct: 892 LQVQSE 897
>sp|P13542|MYH8_MOUSE Myosin-8 OS=Mus musculus GN=Myh8 PE=1 SV=2
Length = 1937
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 365 VVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWK 424
++EEM +E + Q+IT+ + G ++ + + + + +CI + F+N+K W
Sbjct: 775 LLEEMRDEKLAQIITRTQAVCR--GYLMRVEYQKMLLRRESIFCIQYNVRAFMNVKH-WP 831
Query: 425 CMEMAQKITKFIYNHI--RLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLR 482
M++ KI + + + + MK+EF + ++ L S + + LL + DL+
Sbjct: 832 WMKLFFKIKPLLKSAETEKEMATMKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQ 891
Query: 483 RMFQSE 488
QSE
Sbjct: 892 LQVQSE 897
>sp|A1AZL6|SYA_PARDP Alanine--tRNA ligase OS=Paracoccus denitrificans (strain Pd 1222)
GN=alaS PE=3 SV=1
Length = 885
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 303 AEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLL 362
A+ RA+WA +G + A W D ++ HG D T+I E
Sbjct: 427 AKARAAWAGSGETKDAAIWFD----------IAEEHGATEFLGYD-TEISEGQVLALVQD 475
Query: 363 DKVVEEMGEENVVQVITQNTPSYKSAG 389
VEE GE VQ++ TP Y AG
Sbjct: 476 GAAVEEAGEGQQVQIVVNQTPFYGEAG 502
>sp|Q076A3|MYH13_CANFA Myosin-13 OS=Canis familiaris GN=MYH13 PE=3 SV=1
Length = 1940
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 365 VVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWK 424
++EEM +E +V ++T+ + G ++ + K + + +CI + F+N+K W
Sbjct: 776 LLEEMRDEKLVTLMTRTQAICR--GYLMRVEFKKMMERRESIFCIQYNIRSFMNVKH-WP 832
Query: 425 CMEMAQKITKFIYNHI--RLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLR 482
M + KI + + R + MK++F + +E L S R + +LL + DL+
Sbjct: 833 WMNLFFKIKPLLKSAEAEREMATMKEDFERAKEELARSEARRKELEEKMVSLLQEKNDLQ 892
Query: 483 RMFQSE 488
QSE
Sbjct: 893 LQVQSE 898
>sp|Q076A4|MYH8_CANFA Myosin-8 OS=Canis familiaris GN=MYH8 PE=3 SV=1
Length = 1939
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 365 VVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWK 424
++EEM +E + Q+IT+ + G ++ + + + A +CI + F+N+K W
Sbjct: 777 LLEEMRDEKLSQIITRTQAVCR--GFLMRVEYQKMLQRREALFCIQYNIRAFMNVKH-WP 833
Query: 425 CMEMAQKITKFIYNHI--RLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLR 482
M + KI + + + + MK+EF + ++ L S + + LL + DL+
Sbjct: 834 WMRLFFKIKPLLKSAETEKEMATMKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQ 893
Query: 483 RMFQSE 488
QSE
Sbjct: 894 LQVQSE 899
>sp|P45065|MURG_HAEIN UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=murG PE=3 SV=1
Length = 351
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 268 LELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWA-VTGCSVMADSWTDSES 326
LE Q G+G V SQL +L Q +I +N+AE A WA V C A + + +
Sbjct: 210 LEFRHQVGKGAVEEVSQLYGENLEQVKITEFIDNMAEAYA-WADVVICRSGALTVCEIAA 268
Query: 327 RTLINLFVSSPH-------GLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQV-I 378
+FV H +LS V A I+E A ++L ++ + EN++Q+ +
Sbjct: 269 VGAAAIFVPFQHKDRQQYLNAKYLSDVGAAKIIEQADLTPEILVNYLKNLTRENLLQMAL 328
Query: 379 TQNTPSYKSAGKMLEE 394
T S +A + + E
Sbjct: 329 KAKTMSMPNAAQRVAE 344
>sp|A5UIR2|MURG_HAEIG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Haemophilus influenzae (strain PittGG)
GN=murG PE=3 SV=1
Length = 351
Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 268 LELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWA-VTGCSVMADSWTDSES 326
LE Q G+G V SQL +L Q +I +N+AE A WA V C A + + +
Sbjct: 210 LEFRHQVGKGAVEEVSQLYGENLEQVKITEFIDNMAEAYA-WADVVICRSGALTVCEIAA 268
Query: 327 RTLINLFVSSPH-------GLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQV-I 378
+FV H +LS V A I+E A ++L ++ + EN++Q+ +
Sbjct: 269 VGAAAIFVPFQHKDRQQYLNAKYLSDVGAAKIIEQADLTPEMLVNYLKNLTRENLLQMAL 328
Query: 379 TQNTPSYKSAGKMLEE 394
T S +A + + E
Sbjct: 329 KAKTMSMPNAAQRVAE 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 310,899,347
Number of Sequences: 539616
Number of extensions: 13282518
Number of successful extensions: 39697
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 39684
Number of HSP's gapped (non-prelim): 35
length of query: 836
length of database: 191,569,459
effective HSP length: 126
effective length of query: 710
effective length of database: 123,577,843
effective search space: 87740268530
effective search space used: 87740268530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)