Query 047256
Match_columns 383
No_of_seqs 295 out of 1040
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928 Alpha-1,4-N-acetylgluc 100.0 1.4E-64 3E-69 495.1 22.6 288 91-382 119-406 (409)
2 PF04572 Gb3_synth: Alpha 1,4- 100.0 9.4E-30 2E-34 222.3 9.1 120 254-381 1-131 (135)
3 PF04488 Gly_transf_sug: Glyco 99.8 8.7E-20 1.9E-24 151.8 7.5 94 117-231 2-97 (103)
4 PF05704 Caps_synth: Capsular 99.6 3E-15 6.4E-20 145.5 10.8 125 115-274 60-190 (276)
5 COG3774 OCH1 Mannosyltransfera 99.5 4.7E-14 1E-18 139.9 10.5 177 115-356 95-280 (347)
6 PF12919 TcdA_TcdB: TcdA/TcdB 97.7 1.4E-05 3.1E-10 83.8 1.8 58 160-223 175-232 (514)
7 PRK15382 non-LEE encoded effec 93.9 0.11 2.3E-06 49.9 5.4 77 201-279 182-280 (326)
8 PRK15383 type III secretion sy 93.7 0.12 2.6E-06 49.5 5.4 77 201-279 190-288 (335)
9 cd06429 GT8_like_1 GT8_like_1 93.6 0.87 1.9E-05 44.1 11.4 139 119-272 13-177 (257)
10 PRK15384 type III secretion sy 93.4 0.15 3.3E-06 48.9 5.5 77 201-279 187-285 (336)
11 PRK15171 lipopolysaccharide 1, 91.4 0.33 7.2E-06 48.7 5.5 100 114-232 35-142 (334)
12 cd02537 GT8_Glycogenin Glycoge 90.9 0.29 6.3E-06 46.5 4.3 85 214-309 93-180 (240)
13 cd06914 GT8_GNT1 GNT1 is a fun 90.8 0.77 1.7E-05 45.1 7.2 104 203-309 81-188 (278)
14 cd04194 GT8_A4GalT_like A4GalT 90.8 0.53 1.2E-05 44.4 6.0 136 120-273 16-180 (248)
15 PF01501 Glyco_transf_8: Glyco 84.2 0.98 2.1E-05 41.6 3.3 70 201-270 85-179 (250)
16 cd00505 Glyco_transf_8 Members 82.5 8.5 0.00018 36.4 9.1 172 117-312 14-214 (246)
17 PLN00176 galactinol synthase 82.2 1.8 3.9E-05 43.7 4.5 69 204-272 105-207 (333)
18 PF03407 Nucleotid_trans: Nucl 75.2 13 0.00027 34.1 7.6 110 198-312 53-174 (212)
19 COG1442 RfaJ Lipopolysaccharid 69.1 8.8 0.00019 38.6 5.3 93 121-231 19-118 (325)
20 cd06430 GT8_like_2 GT8_like_2 50.1 7.9 0.00017 38.6 1.2 30 203-232 85-118 (304)
21 cd06431 GT8_LARGE_C LARGE cata 40.5 14 0.0003 36.2 1.2 30 203-232 85-119 (280)
22 cd06432 GT8_HUGT1_C_like The C 40.0 15 0.00032 35.3 1.3 95 119-232 16-117 (248)
23 PLN02659 Probable galacturonos 31.9 23 0.00051 37.9 1.3 35 198-232 327-365 (534)
24 PLN02870 Probable galacturonos 31.9 24 0.00052 37.8 1.4 34 199-232 327-364 (533)
25 KOG1928 Alpha-1,4-N-acetylgluc 30.7 19 0.00042 37.0 0.5 24 300-323 335-358 (409)
26 PLN02829 Probable galacturonos 29.3 28 0.00061 37.9 1.4 35 198-232 440-478 (639)
27 PLN02867 Probable galacturonos 29.2 27 0.00059 37.4 1.3 35 198-232 328-366 (535)
28 PLN02523 galacturonosyltransfe 26.6 33 0.00072 36.9 1.4 34 199-232 361-398 (559)
29 PF07801 DUF1647: Protein of u 26.2 62 0.0013 28.8 2.8 49 119-171 76-124 (142)
30 PLN02910 polygalacturonate 4-a 25.8 35 0.00075 37.3 1.4 35 198-232 458-496 (657)
31 PLN03181 glycosyltransferase; 23.8 84 0.0018 32.9 3.6 72 199-272 184-268 (453)
32 PLN02769 Probable galacturonos 23.4 41 0.00088 36.8 1.3 35 198-232 435-473 (629)
33 PF10632 He_PIG_assoc: He_PIG 22.5 23 0.0005 23.0 -0.5 16 249-264 3-19 (29)
34 PLN03182 xyloglucan 6-xylosylt 21.9 1.4E+02 0.0031 31.2 4.8 72 199-271 183-266 (429)
35 PLN02718 Probable galacturonos 20.9 51 0.0011 35.9 1.4 102 121-232 328-439 (603)
36 PLN02742 Probable galacturonos 20.4 53 0.0011 35.3 1.4 35 198-232 336-374 (534)
37 TIGR02537 arch_flag_Nterm arch 20.3 89 0.0019 19.7 1.9 18 10-27 2-19 (26)
No 1
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-64 Score=495.09 Aligned_cols=288 Identities=50% Similarity=0.923 Sum_probs=259.7
Q ss_pred cceeEEEeccCccceecCCCCCCCCchhHhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHH
Q 047256 91 ERTAWFRKKLPEFDILKSDNLTEQFHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSF 170 (383)
Q Consensus 91 ~r~i~F~~t~~~~~~~~~~~~~~~~~~Rq~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~ 170 (383)
...+++++.+..|.+ .|..+...|+.||+|||||||++||++||+|+++++++..++.++++++++++++..+.+|++.
T Consensus 119 ~~~~~~~~c~~~~fm-~w~S~~~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~ 197 (409)
T KOG1928|consen 119 VNSFFRKECSVRFFM-TWISPAESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPF 197 (409)
T ss_pred cchhhccCCceeEEE-EecccccCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchh
Confidence 444555553322221 1223668999999999999999999999999999999888999999999999999999999999
Q ss_pred HhcCCCchhhhhhhhcCCCCCCCCCchhHHHHHHHHHHHHHcCcEEEeCCccccccchhhhhhhccccccccCCCcccee
Q 047256 171 LFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLRNSIAAQSIDVVSGNWTRLN 250 (383)
Q Consensus 171 lf~~TPl~~w~~~~~~g~~~~~~~~~~a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpld~l~~~~g~e~~~~~~~~~~~l~ 250 (383)
++++||.+.|++.|++|+.+++++++.++.||+.|+++||||||||||||||+||++..+.|.+|... ...+|..+|
T Consensus 198 llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~---~~~~~~~ln 274 (409)
T KOG1928|consen 198 LLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDP---ATQAWTRLN 274 (409)
T ss_pred hHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccc---hhhHHHhhc
Confidence 99999999999999999999999999888999999999999999999999999999999999999322 235678999
Q ss_pred ceeeEecCCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHhCCCCCceEECCCCceeccCccccccccccCCCcch
Q 047256 251 NAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQAD 330 (383)
Q Consensus 251 navm~~~pghp~l~~~l~~~~~~yd~~~w~~tGP~llTrvl~~~~~~~~~~i~IlP~~~FyPi~~~~~~~~F~~p~~~~~ 330 (383)
||||+++++|||+.+||++|+.+|||++||++||+++|||++++|+..+.+++|.|+.+|||++|.+++.||..|..+-+
T Consensus 275 navl~F~k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~ 354 (409)
T KOG1928|consen 275 NAVLIFDKNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWD 354 (409)
T ss_pred CceeecCCCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhh
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999998887766
Q ss_pred hHHHHHHhhhccCCcEEEEeecCCcCCcccCCCCHHHHHHHhcCCCcccccc
Q 047256 331 SRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGSVMGRMISQHCVICDQIYS 382 (383)
Q Consensus 331 ~~~~~~~l~~l~~~Sy~IHlwn~~~~~~~i~~gS~~~~La~~~CP~~~~~~~ 382 (383)
..|..+++..+.++||++|+||+.+++++|++||++++|+++|||+|++++.
T Consensus 355 ~~~~~~~~~~~~k~Sy~vHlWNk~S~k~~ie~gS~~~~L~s~~Cp~~~~~s~ 406 (409)
T KOG1928|consen 355 RKFVDEETLKMLKNSYAVHLWNKFSRKLKIEEGSAVAKLVSKHCPRCYSATG 406 (409)
T ss_pred hhhhHHHHHHHhccCeEEEeeeccccccccccchHHHHHHHhcCCcccchhh
Confidence 7776777788889999999999999999999999999999999999998754
No 2
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=99.96 E-value=9.4e-30 Score=222.30 Aligned_cols=120 Identities=38% Similarity=0.812 Sum_probs=107.0
Q ss_pred eEecCCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHhCCCC---------CceEECCCCceeccCcccccccccc
Q 047256 254 LIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPG---------YNFTILPPTAFYPVNWNRIGGLFKV 324 (383)
Q Consensus 254 m~~~pghp~l~~~l~~~~~~yd~~~w~~tGP~llTrvl~~~~~~~~---------~~i~IlP~~~FyPi~~~~~~~~F~~ 324 (383)
|+++++|||++++|++++.+||++.|+.+||.++|||++++|+..+ .+++|+|+++||||+|.+|++||+.
T Consensus 1 m~F~~~H~~~~~~l~df~~~Y~~~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~ 80 (135)
T PF04572_consen 1 MAFDKGHPFLWECLEDFVKNYDGNKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEP 80 (135)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcC
Confidence 6899999999999999999999999999999999999999998643 4799999999999999999999986
Q ss_pred CCCcchhHHHHHHhhhccCCcEEEEeecCCcCCcccCCCC--HHHHHHHhcCCCccccc
Q 047256 325 PQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGS--VMGRMISQHCVICDQIY 381 (383)
Q Consensus 325 p~~~~~~~~~~~~l~~l~~~Sy~IHlwn~~~~~~~i~~gS--~~~~La~~~CP~~~~~~ 381 (383)
+....+. ...++||+||+||+++++.++++|| +|++||++|||+|.+..
T Consensus 81 ~~~~~~~--------~~~~~Sy~vHlWN~~s~~~~i~~~S~~~y~~La~~~CP~~~~~~ 131 (135)
T PF04572_consen 81 PSTEEVM--------EWLKNSYAVHLWNKMSSGLPIEPGSNTLYAKLARQHCPRTYAAA 131 (135)
T ss_pred CcchHHH--------HHhhCceEEEecccccCCccccCCcHHHHHHHHHHhChHHHHHH
Confidence 6543221 2246999999999999999999999 99999999999998653
No 3
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.80 E-value=8.7e-20 Score=151.81 Aligned_cols=94 Identities=33% Similarity=0.567 Sum_probs=75.3
Q ss_pred hhHhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHHHhcCCC-chhhhhhhhcCCCCCCCCC
Q 047256 117 GREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTP-AGAWFDEMKSGNKDPGEIP 195 (383)
Q Consensus 117 ~Rq~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~lf~~TP-l~~w~~~~~~g~~~~~~~~ 195 (383)
.|+.|+|||++++||++++.+++++.. |+.+..+|+..++.++| +..+|. +++++..+
T Consensus 2 ~~~~~~i~s~~~~nP~~~~~~~~d~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~ 60 (103)
T PF04488_consen 2 ERFQCSIESWARHNPDYEYILWTDESD----------------NVRVKRIDIEFLFEKTPWFLELYN-----KWEPGRYP 60 (103)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCc----------------chhhhHHHHHHHHhCChHHHHHHh-----hhhccccc
Confidence 689999999999999999999987522 45566688999999888 334443 22223334
Q ss_pred chhHHHHHHHHHHHHHcCcEEEeCCccccccc-hhhh
Q 047256 196 LAQNLSNLIRLAVLYKYGGVYLDTDFILLKSF-EGLR 231 (383)
Q Consensus 196 ~~a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpl-d~l~ 231 (383)
.++++||++||++||++||||+|+|++|+||+ +.+.
T Consensus 61 ~~~~~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence 46899999999999999999999999999999 7764
No 4
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=99.60 E-value=3e-15 Score=145.52 Aligned_cols=125 Identities=20% Similarity=0.330 Sum_probs=88.1
Q ss_pred CchhHhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCC
Q 047256 115 FHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEI 194 (383)
Q Consensus 115 ~~~Rq~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~ 194 (383)
+...|.| ++|+.+++|+++|.+++.. + ++.+ +++++++. +++..|.+.
T Consensus 60 P~~Vk~c-i~s~~k~~~~~~Vi~lt~~--N------i~~Y-----------v~~P~~i~--------~k~~~g~i~---- 107 (276)
T PF05704_consen 60 PEIVKKC-INSWRKNAPDYEVILLTED--N------IKDY-----------VDIPDFIL--------EKYEKGKIS---- 107 (276)
T ss_pred CHHHHHH-HHHHHHHCCCCeEEEEChH--H------HHHH-----------cCCchhHH--------HHHHcCCCc----
Confidence 4556777 9999999999999999853 1 1211 23333332 344566553
Q ss_pred CchhHHHHHHHHHHHHHcCcEEEeCCccccccchhhh---hhhccccccccCCCccce---eceeeEecCCCHHHHHHHH
Q 047256 195 PLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLR---NSIAAQSIDVVSGNWTRL---NNAVLIFDMNHPLLFKFIE 268 (383)
Q Consensus 195 ~~~a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpld~l~---~~~g~e~~~~~~~~~~~l---~navm~~~pghp~l~~~l~ 268 (383)
.+|+||++|+.+|++|||+|+|++++|.+|++++. +++.+..... ....... .|.+|++.+|||+++.+.+
T Consensus 108 --~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~~~~~ff~~~~~~~-~~~~~~~~~w~~~fi~a~~~n~~~~~~~~ 184 (276)
T PF05704_consen 108 --PAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEIFDSDFFSFSRPDK-DYNPISISSWTNFFIAAKKGNPFIKFWRD 184 (276)
T ss_pred --hhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHHhcCCeeEEeccCc-CcccchHHHhHhhheeECCCCHHHHHHHH
Confidence 38999999999999999999999999999999864 2444422110 1111223 4459999999999999999
Q ss_pred HHHHhc
Q 047256 269 EFAATF 274 (383)
Q Consensus 269 ~~~~~y 274 (383)
.+.+-+
T Consensus 185 ~~~~yw 190 (276)
T PF05704_consen 185 LLLEYW 190 (276)
T ss_pred HHHHHH
Confidence 887643
No 5
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=4.7e-14 Score=139.93 Aligned_cols=177 Identities=23% Similarity=0.355 Sum_probs=121.2
Q ss_pred CchhHhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCC
Q 047256 115 FHGREVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEI 194 (383)
Q Consensus 115 ~~~Rq~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~ 194 (383)
++..-.-+..++...|||++..++++.... +++...+ .|+-+..+ .+
T Consensus 95 ~P~~~~~~~~~~~~~~PdY~yi~~tD~~~~--------~~v~h~~-------------------~~~~~ay~------~y 141 (347)
T COG3774 95 FPEYVNKLFNRWRSLHPDYRYILWTDEMRE--------PLVEHDY-------------------PWFLDAYR------RY 141 (347)
T ss_pred CCHHHHHHHHHHHhcCCCeEEEecchhhhh--------HHHhhcc-------------------HHHHHHHH------cc
Confidence 445544558888899999999888764221 1221111 12222110 11
Q ss_pred CchhHHHHHHHHHHHHHcCcEEEeCCccccccchhhh-h---hhccccccccCCCccceeceeeEecCCCHHHHHHHHHH
Q 047256 195 PLAQNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLR-N---SIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEF 270 (383)
Q Consensus 195 ~~~a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpld~l~-~---~~g~e~~~~~~~~~~~l~navm~~~pghp~l~~~l~~~ 270 (383)
+..+.++|++||.+|++|||||+|+|.-|++++++++ + ++.... ...++|.+|++.||||+++.+++.+
T Consensus 142 p~~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~-------~~~v~n~~m~s~p~hp~~~~~i~~~ 214 (347)
T COG3774 142 PYGALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTI-------PLGVGNGVMGSAPGHPFLKKMIERL 214 (347)
T ss_pred CcchhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcC-------CCcccchhhccCCCCchHHHHHHHh
Confidence 2236899999999999999999999999999999987 3 333333 2468999999999999999999999
Q ss_pred HHhcC-----CCcccccccHHHHHHHHHHhCCCCCceEECCCCceeccCccccccccccCCCcchhHHHHHHhhhccCCc
Q 047256 271 AATFD-----GNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREA 345 (383)
Q Consensus 271 ~~~yd-----~~~w~~tGP~llTrvl~~~~~~~~~~i~IlP~~~FyPi~~~~~~~~F~~p~~~~~~~~~~~~l~~l~~~S 345 (383)
..+.. -..+..+||.+++.+.+++... .++..|+.+.-.+ ..++ ... +++
T Consensus 215 ~~~~~~~~p~~ti~~stGp~iL~~i~~~~~~~-------~~~~~~~~~~~~~-~~~~----------------~~~-~~~ 269 (347)
T COG3774 215 PYNIIWKFPYWTIQASTGPLILSEIHSAYTVQ-------TPPASFDAVNLSD-PAFT----------------NKR-NNQ 269 (347)
T ss_pred hhccccCCCceeeecCCCChhHHHHHHHhhcc-------CCccccceeEecc-hhhh----------------hhc-cce
Confidence 82211 1356689999999999988632 1566666554222 0111 122 389
Q ss_pred EEEEeecCCcC
Q 047256 346 YGVHLWNKQSN 356 (383)
Q Consensus 346 y~IHlwn~~~~ 356 (383)
|..|.+.+.|.
T Consensus 270 ~~~~~~g~~W~ 280 (347)
T COG3774 270 YFLHTGGSSWT 280 (347)
T ss_pred EEEeecCCccc
Confidence 99999999884
No 6
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=97.70 E-value=1.4e-05 Score=83.76 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=35.6
Q ss_pred cEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCCCchhHHHHHHHHHHHHHcCcEEEeCCccc
Q 047256 160 KVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLAQNLSNLIRLAVLYKYGGVYLDTDFIL 223 (383)
Q Consensus 160 nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~~~~a~~SD~lR~~lLyk~GGIYlD~Dv~~ 223 (383)
++.+..++.-.-|+..+...+|...-.- ++ .+|..||++|+.+|+++||||+|+|++.
T Consensus 175 ~~~l~d~~~~~~~~~~~~~~~Y~~El~l---Rg---N~AAASDilRl~iL~~~GGIY~D~D~LP 232 (514)
T PF12919_consen 175 KVDLRDISELQSFKDKENKDNYQQELLL---RG---NYAAASDILRLYILKEYGGIYLDVDMLP 232 (514)
T ss_dssp EEEGGGTT---SCCTHHHHHHHHHHHHT---S-----HHHHHHHHHHHHHHHH-EEEE-TT-EE
T ss_pred CccccccchhhcccchHHHHHHHHHHHH---Cc---ChhhHHHHHHHHHHHHhCCEEEecccCC
Confidence 3444444433344566667777652111 11 2689999999999999999999999887
No 7
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=93.89 E-value=0.11 Score=49.88 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCc-------------------EEEeCCccccccchhhh--hhhccccccccCCCccceeceeeEec-C
Q 047256 201 SNLIRLAVLYKYGG-------------------VYLDTDFILLKSFEGLR--NSIAAQSIDVVSGNWTRLNNAVLIFD-M 258 (383)
Q Consensus 201 SD~lR~~lLyk~GG-------------------IYlD~Dv~~lrpld~l~--~~~g~e~~~~~~~~~~~l~navm~~~-p 258 (383)
=|++|-+.|.|-|+ ||||+|+++..-+..+. +-+...-+. ......+.||+++.. .
T Consensus 182 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r--~~~~~slENg~I~VnRs 259 (326)
T PRK15382 182 FDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPDGIAVHVDC--NDDSKSLENGAIVVNRS 259 (326)
T ss_pred hHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEe--cCCccccccceEEEccC
Confidence 48999888887543 89999999988877642 211111000 011246888877765 5
Q ss_pred CCHHHHHHHHHHHHhcCCCcc
Q 047256 259 NHPLLFKFIEEFAATFDGNKW 279 (383)
Q Consensus 259 ghp~l~~~l~~~~~~yd~~~w 279 (383)
+||.+.+-++.|....++..+
T Consensus 260 nHPALl~GL~iMhsK~da~PY 280 (326)
T PRK15382 260 NHPALLAGLDIMKSKVDAHPY 280 (326)
T ss_pred CCHHHHhhhHHhhcCCCCCcc
Confidence 999999999999887766543
No 8
>PRK15383 type III secretion system protein; Provisional
Probab=93.72 E-value=0.12 Score=49.54 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCc-------------------EEEeCCccccccchhhh--hhhccccccccCCCccceeceeeEec-C
Q 047256 201 SNLIRLAVLYKYGG-------------------VYLDTDFILLKSFEGLR--NSIAAQSIDVVSGNWTRLNNAVLIFD-M 258 (383)
Q Consensus 201 SD~lR~~lLyk~GG-------------------IYlD~Dv~~lrpld~l~--~~~g~e~~~~~~~~~~~l~navm~~~-p 258 (383)
=|++|-+.|.|-|+ ||||+|+++..-+..+. +-+...-+. ..+...+.||+++.. .
T Consensus 190 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r--~~~~~slENg~I~VnRs 267 (335)
T PRK15383 190 FDFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSR--KDNHVSLENGIIAVNRS 267 (335)
T ss_pred hHHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEe--cCCceecccceEEEccC
Confidence 48999888887543 89999999988877642 211111000 011246888877765 5
Q ss_pred CCHHHHHHHHHHHHhcCCCcc
Q 047256 259 NHPLLFKFIEEFAATFDGNKW 279 (383)
Q Consensus 259 ghp~l~~~l~~~~~~yd~~~w 279 (383)
+||.+.+-++.|....++..+
T Consensus 268 nHPALl~GL~iMhsK~da~PY 288 (335)
T PRK15383 268 EHPALIKGLEIMHSKPYGDPY 288 (335)
T ss_pred CCHHHHhhhHHhhcCCCCCcc
Confidence 999999999999887766543
No 9
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=93.60 E-value=0.87 Score=44.12 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=76.0
Q ss_pred HhHHHHHHHHHCCC-CeEE--EEecCCCCCCCcccccccccC----CccEEEECCCHHHHhcC---CCchhhhhhhh--c
Q 047256 119 EVLGLESFFKAHPN-GCLM--ILSRTLDTPSGYRVLKPLLDG----KFKVAAVTPDLSFLFRN---TPAGAWFDEMK--S 186 (383)
Q Consensus 119 q~caIESaar~nP~-~~V~--ll~~~~~~~~~~~~l~~l~~~----~~nV~~~~idl~~lf~~---TPl~~w~~~~~--~ 186 (383)
-+.++-|...+|++ ..+. |+++... ...++.+.+. +-+|++..+|-..+... .++.+-..... .
T Consensus 13 ~~v~i~S~l~nn~~~~~~~fhvvtd~~s----~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T cd06429 13 AAVVINSSISNNKDPSNLVFHIVTDNQN----YGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSN 88 (257)
T ss_pred HHHHHHHHHHhCCCCCceEEEEecCccC----HHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhhhccccccc
Confidence 56778888999987 5444 4555432 1223333322 33778888875444221 12222221100 0
Q ss_pred CCCCCCCCCchhHHHHHHHHHH---HHHcC-cEEEeCCccccccchhhhhh------hccccccccCCCccceeceeeEe
Q 047256 187 GNKDPGEIPLAQNLSNLIRLAV---LYKYG-GVYLDTDFILLKSFEGLRNS------IAAQSIDVVSGNWTRLNNAVLIF 256 (383)
Q Consensus 187 g~~~~~~~~~~a~~SD~lR~~l---Lyk~G-GIYlD~Dv~~lrpld~l~~~------~g~e~~~~~~~~~~~l~navm~~ 256 (383)
-+..+.+ .-..+-++|+.+ |-..+ =+|||+|++|.+++++|.+. +|+-. ..+|.|||..
T Consensus 89 ~~~~~~~---~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~--------dyfNsGV~li 157 (257)
T cd06429 89 LKQRKPE---YISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVE--------TSWNPGVNVV 157 (257)
T ss_pred cccCCcc---ccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEh--------hhcccceEEE
Confidence 0000011 123567888877 33333 59999999999999998541 22211 1578899887
Q ss_pred cC----CCHHHHHHHHHHHH
Q 047256 257 DM----NHPLLFKFIEEFAA 272 (383)
Q Consensus 257 ~p----ghp~l~~~l~~~~~ 272 (383)
.- .+-+.+.+++.+..
T Consensus 158 nl~~wr~~~i~~~~~~~~~~ 177 (257)
T cd06429 158 NLTEWRRQNVTETYEKWMEL 177 (257)
T ss_pred eHHHHHhccHHHHHHHHHHH
Confidence 63 45566666665543
No 10
>PRK15384 type III secretion system protein; Provisional
Probab=93.37 E-value=0.15 Score=48.91 Aligned_cols=77 Identities=26% Similarity=0.488 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCc-------------------EEEeCCccccccchhhh--hhhccccccccCCCccceeceeeEec-C
Q 047256 201 SNLIRLAVLYKYGG-------------------VYLDTDFILLKSFEGLR--NSIAAQSIDVVSGNWTRLNNAVLIFD-M 258 (383)
Q Consensus 201 SD~lR~~lLyk~GG-------------------IYlD~Dv~~lrpld~l~--~~~g~e~~~~~~~~~~~l~navm~~~-p 258 (383)
=|++|-+.|.|-|+ ||||+|+++..-+..+. +-+...-+. ..+...+.||+++.. .
T Consensus 187 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r--~~~~~slENg~I~VnRs 264 (336)
T PRK15384 187 FDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVER--IDGRASMENGIIAVDRN 264 (336)
T ss_pred hHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCCceEEEEEe--cCCceecccceEEEccC
Confidence 48999888887543 89999999988877642 211111000 011246888877765 5
Q ss_pred CCHHHHHHHHHHHHhcCCCcc
Q 047256 259 NHPLLFKFIEEFAATFDGNKW 279 (383)
Q Consensus 259 ghp~l~~~l~~~~~~yd~~~w 279 (383)
+||.+.+-++.|....++..+
T Consensus 265 nHPALl~GL~iMhsK~da~PY 285 (336)
T PRK15384 265 NHPALLAGLEIMHTKFDADPY 285 (336)
T ss_pred CCHHHHhhHHHhhcCCCCCcc
Confidence 999999999999887766543
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=91.40 E-value=0.33 Score=48.68 Aligned_cols=100 Identities=14% Similarity=0.236 Sum_probs=60.6
Q ss_pred CCchhHhHHHHHHHHHCCCC--eEEEEecCCCCCCCcccccccccC-CccEEEECCCHHHHhcCCCchhhhhhhhcCCCC
Q 047256 114 QFHGREVLGLESFFKAHPNG--CLMILSRTLDTPSGYRVLKPLLDG-KFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKD 190 (383)
Q Consensus 114 ~~~~Rq~caIESaar~nP~~--~V~ll~~~~~~~~~~~~l~~l~~~-~~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~ 190 (383)
.+-.--+-+|-|+..+||+. ++.|++++... .....+..+.++ +.+|.+..+|.+.+ ++-|. .
T Consensus 35 ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~-e~~~~l~~l~~~~~~~i~~~~id~~~~-~~~~~--------~---- 100 (334)
T PRK15171 35 NFLFGCGVSIASVLLNNPDKSLVFHVFTDYISD-ADKQRFSALAKQYNTRINIYLINCERL-KSLPS--------T---- 100 (334)
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCH-HHHHHHHHHHHhcCCeEEEEEeCHHHH-hCCcc--------c----
Confidence 34444556799999999985 45667654332 111234455444 34788888876533 32221 0
Q ss_pred CCCCCchhHHHHHHHHHH---HH-HcC-cEEEeCCccccccchhhhh
Q 047256 191 PGEIPLAQNLSNLIRLAV---LY-KYG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 191 ~~~~~~~a~~SD~lR~~l---Ly-k~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
..+ ..+=+.|+.+ |- .+. =+|||+|++|..++++|.+
T Consensus 101 -~~~----s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 101 -KNW----TYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred -CcC----CHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 111 3566778844 32 233 4999999999999998753
No 12
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=90.94 E-value=0.29 Score=46.50 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=53.3
Q ss_pred cEEEeCCccccccchhhhhh---hccccccccCCCccceeceeeEecCCCHHHHHHHHHHHHhcCCCcccccccHHHHHH
Q 047256 214 GVYLDTDFILLKSFEGLRNS---IAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRV 290 (383)
Q Consensus 214 GIYlD~Dv~~lrpld~l~~~---~g~e~~~~~~~~~~~l~navm~~~pghp~l~~~l~~~~~~yd~~~w~~tGP~llTrv 290 (383)
=+|+|+|++++++++++.+. ++..... .....+|.|||.+.++....+.+++.+.+... ....--.++..+
T Consensus 93 vlylD~D~~v~~~i~~Lf~~~~~~~a~~d~---~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~---~~~~DQdiLN~~ 166 (240)
T cd02537 93 VVFLDADTLVLRNIDELFDLPGEFAAAPDC---GWPDLFNSGVFVLKPSEETFNDLLDALQDTPS---FDGGDQGLLNSY 166 (240)
T ss_pred EEEEeCCeeEccCHHHHhCCCCceeeeccc---CccccccceEEEEcCCHHHHHHHHHHHhccCC---CCCCCHHHHHHH
Confidence 38999999999999998653 2222110 10136899999999998888889888765321 111223455554
Q ss_pred HHHHhCCCCCceEECCCCc
Q 047256 291 VQRVQTRPGYNFTILPPTA 309 (383)
Q Consensus 291 l~~~~~~~~~~i~IlP~~~ 309 (383)
++.. ..+..+|..+
T Consensus 167 ~~~~-----~~~~~l~~~y 180 (240)
T cd02537 167 FSDR-----GIWKRLPFTY 180 (240)
T ss_pred HcCC-----CCEeECCcce
Confidence 4321 1266666653
No 13
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=90.76 E-value=0.77 Score=45.10 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=60.4
Q ss_pred HHHHHHHH--HcC-cEEEeCCccccccchhhhhhh-ccccccccCCCccceeceeeEecCCCHHHHHHHHHHHHhcCCCc
Q 047256 203 LIRLAVLY--KYG-GVYLDTDFILLKSFEGLRNSI-AAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKFIEEFAATFDGNK 278 (383)
Q Consensus 203 ~lR~~lLy--k~G-GIYlD~Dv~~lrpld~l~~~~-g~e~~~~~~~~~~~l~navm~~~pghp~l~~~l~~~~~~yd~~~ 278 (383)
+.|+.+.- +|- -+|||+|++|+++++.|.+.- ...-. .+...| .+|.|||...|.-....++++.+.+......
T Consensus 81 ~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~A-ap~~~~-~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~ 158 (278)
T cd06914 81 LTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFA-APRAYW-KFASHLMVIKPSKEAFKELMTEILPAYLNKK 158 (278)
T ss_pred HHHHHhccccceeeEEEecCChhhhcChHHHhcCCccccee-eecCcc-eecceeEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 66665533 232 589999999999999976421 00000 011123 7999999999999888888888765321110
Q ss_pred ccccccHHHHHHHHHHhCCCCCceEECCCCc
Q 047256 279 WGHNGPYLVSRVVQRVQTRPGYNFTILPPTA 309 (383)
Q Consensus 279 w~~tGP~llTrvl~~~~~~~~~~i~IlP~~~ 309 (383)
...--.++..++....+....++.++|...
T Consensus 159 -~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~ 188 (278)
T cd06914 159 -NEYDMDLINEEFYNSKQLFKPSVLVLPHRQ 188 (278)
T ss_pred -CCCChHHHHHHHhCCccccCcceEEcCccc
Confidence 001125566655433111122477777653
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=90.75 E-value=0.53 Score=44.43 Aligned_cols=136 Identities=20% Similarity=0.239 Sum_probs=79.1
Q ss_pred hHHHHHHHHHCC--CCeEEEEecCCCCCCCcccccccccC-CccEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCCCc
Q 047256 120 VLGLESFFKAHP--NGCLMILSRTLDTPSGYRVLKPLLDG-KFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPL 196 (383)
Q Consensus 120 ~caIESaar~nP--~~~V~ll~~~~~~~~~~~~l~~l~~~-~~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~~~ 196 (383)
+.++.|+.++++ ...+.|++++... .....++.+... +.+|.++.++.+.... -+. ....+
T Consensus 16 ~~~l~Sl~~~~~~~~~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~i~~~~~~~-~~~------------~~~~~-- 79 (248)
T cd04194 16 AVTIKSILANNSKRDYDFYILNDDISE-ENKKKLKELLKKYNSSIEFIKIDNDDFKF-FPA------------TTDHI-- 79 (248)
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCH-HHHHHHHHHHHhcCCeEEEEEcCHHHHhc-CCc------------ccccc--
Confidence 445899999999 5566777755321 112334444432 4577887777543321 110 00111
Q ss_pred hhHHHHHHHHHHHHHcC----cEEEeCCccccccchhhhh------hhccccc-cc-----------cCCCccceeceee
Q 047256 197 AQNLSNLIRLAVLYKYG----GVYLDTDFILLKSFEGLRN------SIAAQSI-DV-----------VSGNWTRLNNAVL 254 (383)
Q Consensus 197 ~a~~SD~lR~~lLyk~G----GIYlD~Dv~~lrpld~l~~------~~g~e~~-~~-----------~~~~~~~l~navm 254 (383)
..+-+.|+.+-.-.. =+|+|+|+++++++++|.+ .+|.-.+ .. .......+|.|||
T Consensus 80 --~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv~ 157 (248)
T cd04194 80 --SYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVL 157 (248)
T ss_pred --cHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecch
Confidence 245678888776555 5899999999999998754 1222111 00 0011236899999
Q ss_pred EecCC----CHHHHHHHHHHHHh
Q 047256 255 IFDMN----HPLLFKFIEEFAAT 273 (383)
Q Consensus 255 ~~~pg----hp~l~~~l~~~~~~ 273 (383)
..... +.+..++++.+.++
T Consensus 158 l~nl~~~r~~~~~~~~~~~~~~~ 180 (248)
T cd04194 158 LINLKKWREENITEKLLELIKEY 180 (248)
T ss_pred heeHHHHHHhhhHHHHHHHHHhC
Confidence 88754 34666777766543
No 15
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=84.22 E-value=0.98 Score=41.59 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=38.6
Q ss_pred HHHHHHHHHHH---cC-cEEEeCCccccccchhhhh------hhccccc---------------cccCCCccceeceeeE
Q 047256 201 SNLIRLAVLYK---YG-GVYLDTDFILLKSFEGLRN------SIAAQSI---------------DVVSGNWTRLNNAVLI 255 (383)
Q Consensus 201 SD~lR~~lLyk---~G-GIYlD~Dv~~lrpld~l~~------~~g~e~~---------------~~~~~~~~~l~navm~ 255 (383)
+=+.|+.+... ++ =+|+|+|++++++++.+.+ .++.-.. ....+....+|.|||.
T Consensus 85 ~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~l 164 (250)
T PF01501_consen 85 ATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVML 164 (250)
T ss_dssp GGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEEE
T ss_pred HHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEEE
Confidence 33446544433 33 4999999999999998754 1211111 0001223579999999
Q ss_pred ecCCCHHHHHHHHHH
Q 047256 256 FDMNHPLLFKFIEEF 270 (383)
Q Consensus 256 ~~pghp~l~~~l~~~ 270 (383)
+.+...--..+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (250)
T PF01501_consen 165 FNPSKWRKENILQKL 179 (250)
T ss_dssp EEHHHHHHHHHHHHH
T ss_pred Eeechhhhhhhhhhh
Confidence 987665433344333
No 16
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=82.54 E-value=8.5 Score=36.37 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=87.7
Q ss_pred hhHhHHHHHHHHHCCC-CeEEEEecCCCCCCCccccccccc-CCccEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCC
Q 047256 117 GREVLGLESFFKAHPN-GCLMILSRTLDTPSGYRVLKPLLD-GKFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEI 194 (383)
Q Consensus 117 ~Rq~caIESaar~nP~-~~V~ll~~~~~~~~~~~~l~~l~~-~~~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~ 194 (383)
.--..++-|+.+++++ ..+.|+++.... .....++.+.+ .+.++.++.++...... -+ . . + ..
T Consensus 14 ~~~~v~i~Sl~~~~~~~~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~----~---~-~----~~- 78 (246)
T cd00505 14 RGAIVLMKSVLRHRTKPLRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVDILDSVD-SE----H---L-K----RP- 78 (246)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEEccccH-HHHHHHHHHHhccCceEEEEeccccCcch-hh----h---h-c----Cc-
Confidence 3346779999999885 455666654321 11223443332 24567777776443221 00 0 0 0 00
Q ss_pred CchhHHHHHHHHHH--HHH-cC-cEEEeCCccccccchhhhhh------hcccccccc-------------CCCccceec
Q 047256 195 PLAQNLSNLIRLAV--LYK-YG-GVYLDTDFILLKSFEGLRNS------IAAQSIDVV-------------SGNWTRLNN 251 (383)
Q Consensus 195 ~~~a~~SD~lR~~l--Lyk-~G-GIYlD~Dv~~lrpld~l~~~------~g~e~~~~~-------------~~~~~~l~n 251 (383)
-..+=+.|+.+ |-. +. =+|||+|+++++++++|.+. +|.-.+... ......+|.
T Consensus 79 ---~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNs 155 (246)
T cd00505 79 ---IKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNS 155 (246)
T ss_pred ---cccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceee
Confidence 01233566655 222 33 48999999999999997541 222111000 001236899
Q ss_pred eeeEecCCCH----HHHHHHHHHHHhcCCCcccccccHHHHHHHHHHhCCCCCceEECCCCceec
Q 047256 252 AVLIFDMNHP----LLFKFIEEFAATFDGNKWGHNGPYLVSRVVQRVQTRPGYNFTILPPTAFYP 312 (383)
Q Consensus 252 avm~~~pghp----~l~~~l~~~~~~yd~~~w~~tGP~llTrvl~~~~~~~~~~i~IlP~~~FyP 312 (383)
|||.....-- ++.++++...+.- . .....-..++..++...+ ..+..+|..+=+.
T Consensus 156 GVmlinl~~~r~~~~~~~~~~~~~~~~-~-~~~~~DQd~LN~~~~~~~----~~i~~L~~~wN~~ 214 (246)
T cd00505 156 GVFVVNLSKERRNQLLKVALEKWLQSL-S-SLSGGDQDLLNTFFKQVP----FIVKSLPCIWNVR 214 (246)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHhhc-c-cCccCCcHHHHHHHhcCC----CeEEECCCeeeEE
Confidence 9999887654 3333433332221 1 122233566666664321 2367777664443
No 17
>PLN00176 galactinol synthase
Probab=82.25 E-value=1.8 Score=43.67 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=45.7
Q ss_pred HHHHHHHHcC-cEEEeCCccccccchhhhhh----hcccccc--------------------c-------cCC--Cccce
Q 047256 204 IRLAVLYKYG-GVYLDTDFILLKSFEGLRNS----IAAQSID--------------------V-------VSG--NWTRL 249 (383)
Q Consensus 204 lR~~lLyk~G-GIYlD~Dv~~lrpld~l~~~----~g~e~~~--------------------~-------~~~--~~~~l 249 (383)
+|+.-|.+|. =+|||+|+++++++++|.+. +++-.+. + ..+ ....+
T Consensus 105 l~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~~~~~yF 184 (333)
T PLN00176 105 LRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLYF 184 (333)
T ss_pred hhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccCCCCCeE
Confidence 5555566675 69999999999999998652 1110000 0 000 11368
Q ss_pred eceeeEecCCCHHHHHHHHHHHH
Q 047256 250 NNAVLIFDMNHPLLFKFIEEFAA 272 (383)
Q Consensus 250 ~navm~~~pghp~l~~~l~~~~~ 272 (383)
|.|+|.+.|.....+.+++.+..
T Consensus 185 NSGVlvinps~~~~~~ll~~l~~ 207 (333)
T PLN00176 185 NAGMFVFEPSLSTYEDLLETLKI 207 (333)
T ss_pred EeEEEEEEcCHHHHHHHHHHHHh
Confidence 99999999998877888876643
No 18
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=75.23 E-value=13 Score=34.13 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCCccccccchhhh-h----hhccccccc---cCCCccceeceeeEecCCCH---HHHHH
Q 047256 198 QNLSNLIRLAVLYKYGGVYLDTDFILLKSFEGLR-N----SIAAQSIDV---VSGNWTRLNNAVLIFDMNHP---LLFKF 266 (383)
Q Consensus 198 a~~SD~lR~~lLyk~GGIYlD~Dv~~lrpld~l~-~----~~g~e~~~~---~~~~~~~l~navm~~~pghp---~l~~~ 266 (383)
..+..+++-.+-.-+-=+|+|+|++.+|+..++. + .+...+... ..+....+|.|++.+.+.-. +++++
T Consensus 53 ~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w 132 (212)
T PF03407_consen 53 WLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDW 132 (212)
T ss_pred HHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHH
Confidence 4677777655544466799999999999776654 2 111111100 01112346888888877443 34444
Q ss_pred HHHHHHhcCCCcccccccHHHHHHHHHHhCC-CCCceEECCCCceec
Q 047256 267 IEEFAATFDGNKWGHNGPYLVSRVVQRVQTR-PGYNFTILPPTAFYP 312 (383)
Q Consensus 267 l~~~~~~yd~~~w~~tGP~llTrvl~~~~~~-~~~~i~IlP~~~FyP 312 (383)
++.+.+. +..| --.++..++.+.... .+..+.++|...|--
T Consensus 133 ~~~~~~~--~~~~---DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~ 174 (212)
T PF03407_consen 133 LERMAES--PGCW---DQQAFNELLREQAARYGGLRVRFLPPSLFPN 174 (212)
T ss_pred HHHHHhC--CCcc---hHHHHHHHHHhcccCCcCcEEEEeCHHHeec
Confidence 4444322 2222 246777777664321 335788899998843
No 19
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=69.14 E-value=8.8 Score=38.61 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=56.4
Q ss_pred HHHHHHHHHCC--CCeEEEEecCCCCCCCcccccccccCC-ccEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCCCch
Q 047256 121 LGLESFFKAHP--NGCLMILSRTLDTPSGYRVLKPLLDGK-FKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPLA 197 (383)
Q Consensus 121 caIESaar~nP--~~~V~ll~~~~~~~~~~~~l~~l~~~~-~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~~~~ 197 (383)
-||-|+..+|+ ..++.++..+...+ ....++.+++.+ -.+.+..+|.+.+-. .|. .. .++
T Consensus 19 vsI~SiL~~n~~~~~~fhil~~~i~~e-~~~~l~~~~~~f~~~i~~~~id~~~~~~-~~~--------~~----~~~--- 81 (325)
T COG1442 19 VSIYSLLEHNRKIFYKFHILVDGLNEE-DKKKLNETAEPFKSFIVLEVIDIEPFLD-YPP--------FT----KRF--- 81 (325)
T ss_pred HHHHHHHHhCccccEEEEEEecCCCHH-HHHHHHHHHHhhccceeeEEEechhhhc-ccc--------cc----cch---
Confidence 46999999999 66777888765531 112333333322 244555566554432 221 00 111
Q ss_pred hHHHHHHHHHHHHHcCc----EEEeCCccccccchhhh
Q 047256 198 QNLSNLIRLAVLYKYGG----VYLDTDFILLKSFEGLR 231 (383)
Q Consensus 198 a~~SD~lR~~lLyk~GG----IYlD~Dv~~lrpld~l~ 231 (383)
. .+=++||.+=--..- +|+|.|++|.++++.+.
T Consensus 82 s-~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf 118 (325)
T COG1442 82 S-KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELF 118 (325)
T ss_pred H-HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHH
Confidence 2 556778876555444 99999999999999875
No 20
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=50.12 E-value=7.9 Score=38.60 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=22.8
Q ss_pred HHHHHH---HHHc-CcEEEeCCccccccchhhhh
Q 047256 203 LIRLAV---LYKY-GGVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 203 ~lR~~l---Lyk~-GGIYlD~Dv~~lrpld~l~~ 232 (383)
+.|+.+ |-.. -=+|||+|++|++|+++|.+
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence 777754 3332 45999999999999998754
No 21
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=40.50 E-value=14 Score=36.21 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred HHHHHHHHH----cC-cEEEeCCccccccchhhhh
Q 047256 203 LIRLAVLYK----YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 203 ~lR~~lLyk----~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
++|+.+--- +. =+|||+|++|..++.+|.+
T Consensus 85 y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~ 119 (280)
T cd06431 85 LMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK 119 (280)
T ss_pred HHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence 468876332 33 4999999999999998754
No 22
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=39.97 E-value=15 Score=35.32 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHCC-CCeEEEEecCCCCCCCcccccccccC-CccEEEECCCHHHHhcCCCchhhhhhhhcCCCCCCCCCc
Q 047256 119 EVLGLESFFKAHP-NGCLMILSRTLDTPSGYRVLKPLLDG-KFKVAAVTPDLSFLFRNTPAGAWFDEMKSGNKDPGEIPL 196 (383)
Q Consensus 119 q~caIESaar~nP-~~~V~ll~~~~~~~~~~~~l~~l~~~-~~nV~~~~idl~~lf~~TPl~~w~~~~~~g~~~~~~~~~ 196 (383)
-+-++-|+..+|. ..++.|++++... .....+..+.++ +.+++++.+|....+...+. . .+
T Consensus 16 ~~v~l~Sll~nn~~~~~fyil~~~is~-e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~---------~----~~--- 78 (248)
T cd06432 16 LRIMMLSVMKNTKSPVKFWFIKNFLSP-QFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTE---------K----QR--- 78 (248)
T ss_pred HHHHHHHHHHcCCCCEEEEEEeCCCCH-HHHHHHHHHHHHhCCceEEEEecChhhhhcccc---------c----ch---
Confidence 3566899988874 3466667755332 122344455444 34667776664332221110 0 00
Q ss_pred hhHHHHHHHHHH---HHH-cC-cEEEeCCccccccchhhhh
Q 047256 197 AQNLSNLIRLAV---LYK-YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 197 ~a~~SD~lR~~l---Lyk-~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
...+ +.|+.+ |-+ .+ =+|||+|++|..++.+|.+
T Consensus 79 -~~~~-y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~ 117 (248)
T cd06432 79 -IIWG-YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMD 117 (248)
T ss_pred -hHHH-HHHHHHHHhhhhccCEEEEEcCCceecccHHHHHh
Confidence 0111 233322 222 33 5899999999999999754
No 23
>PLN02659 Probable galacturonosyltransferase
Probab=31.91 E-value=23 Score=37.85 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=26.8
Q ss_pred hHHHHHHHHHH--HHH-cC-cEEEeCCccccccchhhhh
Q 047256 198 QNLSNLIRLAV--LYK-YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 198 a~~SD~lR~~l--Lyk-~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
--...++|+.+ +.. .+ =+|||.|++|.+++.+|.+
T Consensus 327 lS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~ 365 (534)
T PLN02659 327 NSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWD 365 (534)
T ss_pred eeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHh
Confidence 35668899876 332 33 5899999999999999754
No 24
>PLN02870 Probable galacturonosyltransferase
Probab=31.88 E-value=24 Score=37.78 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH--H-cC-cEEEeCCccccccchhhhh
Q 047256 199 NLSNLIRLAVLY--K-YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 199 ~~SD~lR~~lLy--k-~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
-...++|+.+=- . .. =+|||.|++|.+++.+|.+
T Consensus 327 S~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~ 364 (533)
T PLN02870 327 SLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWD 364 (533)
T ss_pred CHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhh
Confidence 467889987733 2 22 4899999999999999754
No 25
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=30.74 E-value=19 Score=36.98 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=22.2
Q ss_pred CceEECCCCceeccCccccccccc
Q 047256 300 YNFTILPPTAFYPVNWNRIGGLFK 323 (383)
Q Consensus 300 ~~i~IlP~~~FyPi~~~~~~~~F~ 323 (383)
.++..++.+.|||++|.+|+++|.
T Consensus 335 ~~vn~~~i~~fy~iP~~ew~~~~~ 358 (409)
T KOG1928|consen 335 YPVNWLEIQAFYAIPWTEWDRKFV 358 (409)
T ss_pred CceeeeccccccccchhHhhhhhh
Confidence 479999999999999999999994
No 26
>PLN02829 Probable galacturonosyltransferase
Probab=29.35 E-value=28 Score=37.93 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=27.0
Q ss_pred hHHHHHHHHHH--HHH-cC-cEEEeCCccccccchhhhh
Q 047256 198 QNLSNLIRLAV--LYK-YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 198 a~~SD~lR~~l--Lyk-~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
-....++|+.+ +.. .. =||||.|++|.+++.+|.+
T Consensus 440 lS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 440 LSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred hhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 35678899977 443 22 4899999999999999754
No 27
>PLN02867 Probable galacturonosyltransferase
Probab=29.15 E-value=27 Score=37.43 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHcC----cEEEeCCccccccchhhhh
Q 047256 198 QNLSNLIRLAVLYKYG----GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 198 a~~SD~lR~~lLyk~G----GIYlD~Dv~~lrpld~l~~ 232 (383)
--.-.++|+.+=--+. =+|||.|++|.+++++|.+
T Consensus 328 lS~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwd 366 (535)
T PLN02867 328 LSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWE 366 (535)
T ss_pred hhHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHh
Confidence 3456788988755443 4899999999999999854
No 28
>PLN02523 galacturonosyltransferase
Probab=26.63 E-value=33 Score=36.90 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHH---cC-cEEEeCCccccccchhhhh
Q 047256 199 NLSNLIRLAVLYK---YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 199 ~~SD~lR~~lLyk---~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
-.+.++|+.+=-- .+ =+|||.|++|.+++.+|.+
T Consensus 361 S~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 361 SMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred hHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 4678899876432 33 5899999999999999754
No 29
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=26.22 E-value=62 Score=28.77 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHCCCCeEEEEecCCCCCCCcccccccccCCccEEEECCCHHHH
Q 047256 119 EVLGLESFFKAHPNGCLMILSRTLDTPSGYRVLKPLLDGKFKVAAVTPDLSFL 171 (383)
Q Consensus 119 q~caIESaar~nP~~~V~ll~~~~~~~~~~~~l~~l~~~~~nV~~~~idl~~l 171 (383)
-.-+|.|..+..|+-.++|..=++.. ..++.+.+...|++++..|...|
T Consensus 76 ~~~~i~si~~~~P~~k~ilY~LgL~~----~~i~~L~~~~~n~evr~Fn~s~Y 124 (142)
T PF07801_consen 76 SMKSISSIRKFYPNHKIILYDLGLSE----EQIKKLKKNFCNVEVRKFNFSKY 124 (142)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCCCCH----HHHHHHHhcCCceEEEECCCccC
Confidence 34568899999999999888755442 22444433336899999987543
No 30
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=25.82 E-value=35 Score=37.32 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHH--H-cC-cEEEeCCccccccchhhhh
Q 047256 198 QNLSNLIRLAVLY--K-YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 198 a~~SD~lR~~lLy--k-~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
.....++|+.+-- . .. =+|||.|++|.+++.+|.+
T Consensus 458 lS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~ 496 (657)
T PLN02910 458 LSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 496 (657)
T ss_pred hhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHh
Confidence 4677889987633 2 22 5999999999999999754
No 31
>PLN03181 glycosyltransferase; Provisional
Probab=23.83 E-value=84 Score=32.89 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcC----cEEEeCCccccccchhh--h-----h--hhccccccccCCCccceeceeeEecCCCHHHHH
Q 047256 199 NLSNLIRLAVLYKYG----GVYLDTDFILLKSFEGL--R-----N--SIAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFK 265 (383)
Q Consensus 199 ~~SD~lR~~lLyk~G----GIYlD~Dv~~lrpld~l--~-----~--~~g~e~~~~~~~~~~~l~navm~~~pghp~l~~ 265 (383)
.+-+++|=+++. |- =+|||.|.+.+.+--.| . | ..|..........|..+|+|++-.. +++.-.+
T Consensus 184 aKipalRaAM~a-~PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy~~qdw~GlN~GsFLIR-NcqWSl~ 261 (453)
T PLN03181 184 AKLPVVRAAMLA-HPEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIYEKRSWTALNAGVFLIR-NCQWSLD 261 (453)
T ss_pred hHHHHHHHHHHH-CCCceEEEEecCCceeecCCCCCCHhhcCCccccccCCcccccccccccccceeeeEEe-cCHHHHH
Confidence 577888877654 43 37999999999873222 1 2 1233322222345789999998776 9999999
Q ss_pred HHHHHHH
Q 047256 266 FIEEFAA 272 (383)
Q Consensus 266 ~l~~~~~ 272 (383)
+|+.-..
T Consensus 262 LLDaWa~ 268 (453)
T PLN03181 262 FMDAWAS 268 (453)
T ss_pred HHHHHHh
Confidence 9997653
No 32
>PLN02769 Probable galacturonosyltransferase
Probab=23.39 E-value=41 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=26.9
Q ss_pred hHHHHHHHHHH--HHH-cC-cEEEeCCccccccchhhhh
Q 047256 198 QNLSNLIRLAV--LYK-YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 198 a~~SD~lR~~l--Lyk-~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
.-...++|+.+ |.. .+ =+|||.|++|.+++.+|.+
T Consensus 435 iS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 435 LSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred ccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 35678899877 333 23 5999999999999999754
No 33
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=22.49 E-value=23 Score=22.98 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=12.4
Q ss_pred eece-eeEecCCCHHHH
Q 047256 249 LNNA-VLIFDMNHPLLF 264 (383)
Q Consensus 249 l~na-vm~~~pghp~l~ 264 (383)
||++ ++++.||+||+-
T Consensus 3 IN~~~v~G~rPg~pfl~ 19 (29)
T PF10632_consen 3 INSPRVFGARPGSPFLF 19 (29)
T ss_pred cccCcEEcccCCCcEEE
Confidence 5555 789999999864
No 34
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=21.89 E-value=1.4e+02 Score=31.16 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcC---cEEEeCCcccccc-----chhhh--hh--hccccccccCCCccceeceeeEecCCCHHHHHH
Q 047256 199 NLSNLIRLAVLYKYG---GVYLDTDFILLKS-----FEGLR--NS--IAAQSIDVVSGNWTRLNNAVLIFDMNHPLLFKF 266 (383)
Q Consensus 199 ~~SD~lR~~lLyk~G---GIYlD~Dv~~lrp-----ld~l~--~~--~g~e~~~~~~~~~~~l~navm~~~pghp~l~~~ 266 (383)
.+-+++|=+++.+-- =+|||.|.+.+.+ ++... |. .|++..-.....|..+|+|+|... +|+.-.++
T Consensus 183 aKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l~~~kdW~GLNtGsFLIR-NcqWSldl 261 (429)
T PLN03182 183 AKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELVYDQKSWIGLNTGSFLIR-NCQWSLDL 261 (429)
T ss_pred hHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhheeccccCccceeeEEEE-cCHHHHHH
Confidence 467788888875322 3799999998753 22111 21 244443233456889999988765 99999999
Q ss_pred HHHHH
Q 047256 267 IEEFA 271 (383)
Q Consensus 267 l~~~~ 271 (383)
++...
T Consensus 262 LDaWa 266 (429)
T PLN03182 262 LDAWA 266 (429)
T ss_pred HHHHH
Confidence 98754
No 35
>PLN02718 Probable galacturonosyltransferase
Probab=20.95 E-value=51 Score=35.92 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=52.7
Q ss_pred HHHHHHHHH--CCC-CeEEEEecCCCCCCCcccccccccC-CccEEEECCCHHHHhcCCCc--hhhhhhhhcCCCCCCCC
Q 047256 121 LGLESFFKA--HPN-GCLMILSRTLDTPSGYRVLKPLLDG-KFKVAAVTPDLSFLFRNTPA--GAWFDEMKSGNKDPGEI 194 (383)
Q Consensus 121 caIESaar~--nP~-~~V~ll~~~~~~~~~~~~l~~l~~~-~~nV~~~~idl~~lf~~TPl--~~w~~~~~~g~~~~~~~ 194 (383)
-+|-|+..+ +|+ ....|+++.... ..-..+..+-.. +.+|++..+|- |+.-|. .+.+.+..+ ..+.
T Consensus 328 VvInSil~Ns~np~~ivFHVvTD~is~-~~mk~wf~l~~~~~a~I~V~~Idd---f~~lp~~~~~~lk~l~s--~~~~-- 399 (603)
T PLN02718 328 VVVNSTISSSKEPEKIVFHVVTDSLNY-PAISMWFLLNPPGKATIQILNIDD---MNVLPADYNSLLMKQNS--HDPR-- 399 (603)
T ss_pred EEhhhhhhccCCCCcEEEEEEeCCCCH-HHHHHHHHhCCCCCcEEEEEecch---hccccccchhhhhhccc--cccc--
Confidence 457899887 666 234456654321 111111112222 34778877753 221111 011111111 1111
Q ss_pred CchhHHHHHHHHHHHHH---cC-cEEEeCCccccccchhhhh
Q 047256 195 PLAQNLSNLIRLAVLYK---YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 195 ~~~a~~SD~lR~~lLyk---~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
+-..+-++|+.+--- .+ =||||+|++|.+++.+|.+
T Consensus 400 --~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 400 --YISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred --cccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 124677889877332 22 4899999999999999754
No 36
>PLN02742 Probable galacturonosyltransferase
Probab=20.45 E-value=53 Score=35.28 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHH---cC-cEEEeCCccccccchhhhh
Q 047256 198 QNLSNLIRLAVLYK---YG-GVYLDTDFILLKSFEGLRN 232 (383)
Q Consensus 198 a~~SD~lR~~lLyk---~G-GIYlD~Dv~~lrpld~l~~ 232 (383)
.....++|+.+-.- .+ =||||+|++|.+++.+|.+
T Consensus 336 ~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~ 374 (534)
T PLN02742 336 LSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFS 374 (534)
T ss_pred ccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhc
Confidence 45778999887332 22 5999999999999999754
No 37
>TIGR02537 arch_flag_Nterm archaeal flagellin N-terminal-like domain. This model describes a hydrophobic N-terminal sequence of archaeal flagellins and other archaeal proteins. The sequence is directly analogous to bacterial sequences recognized by TIGR02532, which has cleavage motif resembling G^FxxxE followed by strongly hydrophobic sequence. Such sequences are the recognized for cleavage and methylation, and include pilins and other pilus components and competence and type II secretion secretion proteins. In the present family, the E is not conversed and sequence differs enough that there is no overlap between this family and TIGR02532.
Probab=20.31 E-value=89 Score=19.73 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.1
Q ss_pred ccccchhHHHHHHHHHHh
Q 047256 10 RVKSAILALVIFIATFFI 27 (383)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (383)
|+-|||+.++++.++.+.
T Consensus 2 rgis~I~~~iiliai~iv 19 (26)
T TIGR02537 2 KGISPIIGTIILIAITIV 19 (26)
T ss_pred CcchhHHHHHHHHHHHHH
Confidence 477899999988887543
Done!