Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>047258
KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAIC
VQPYQSNTTTYVPSHPASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLTPNLPVSS
STPTASPLNPPLSLQWPNGGPVLQTFPPPTPPPSLTPAFTSNNGPFISKKKV

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047258
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2201821 - symbol:DCP1 "decapping 1" species:37...   187  8.9e-18   2


>TAIR|locus:2201821 [details] [associations]
            symbol:DCP1 "decapping 1" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=NAS;IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0031087
            "deadenylation-independent decapping of nuclear-transcribed mRNA"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0042803
            "protein homodimerization activity" evidence=IPI] [GO:0050072
            "m7G(5')pppN diphosphatase activity" evidence=IDA] [GO:0000278
            "mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0006397 GO:GO:0016787
            GO:GO:0000932 EMBL:AC006932 eggNOG:NOG314415 InterPro:IPR010334
            PANTHER:PTHR16290 Pfam:PF06058 KO:K12611 EMBL:AF007109
            IPI:IPI00517774 PIR:T52141 RefSeq:NP_563814.1 UniGene:At.24949
            ProteinModelPortal:Q9SJF3 SMR:Q9SJF3 STRING:Q9SJF3 PaxDb:Q9SJF3
            PRIDE:Q9SJF3 EnsemblPlants:AT1G08370.1 GeneID:837357
            KEGG:ath:AT1G08370 GeneFarm:4938 TAIR:At1g08370
            HOGENOM:HOG000242228 InParanoid:Q9SJF3 OMA:MAVMDGP PhylomeDB:Q9SJF3
            ProtClustDB:CLSN2687726 Genevestigator:Q9SJF3 GermOnline:AT1G08370
            GO:GO:0031087 Uniprot:Q9SJF3
        Length = 367

 Score = 187 (70.9 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 41/76 (53%), Positives = 50/76 (65%)

Query:     1 KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAIC 60
             K  S    FEELEA  TMAVMDGPLE + S A D P+DPAFVNFFS TM +GN+++ +  
Sbjct:   145 KASSSKSEFEELEAKPTMAVMDGPLEPS-STARDAPDDPAFVNFFSSTMNLGNTASGSAS 203

Query:    61 VQPYQSNTTTYVPSHP 76
               PYQS+   + P  P
Sbjct:   204 -GPYQSSAIPHQPHQP 218

 Score = 53 (23.7 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query:   114 PNLPVSSSTPTASPLNPPLSL--QWPNGGPVLQ 144
             P+L    S PTA PLNP  +   Q   G PVLQ
Sbjct:   283 PHLIPGVSMPTAPPLNPNNASHQQRSYGTPVLQ 315

 Score = 35 (17.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query:   119 SSSTPTASPLNPPL---SLQWPNGGPVL 143
             S  TP   P  PP    SL     GPV+
Sbjct:   308 SYGTPVLQPFPPPTPPPSLAPAPTGPVI 335


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.126   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       141   0.00091  102 3  11 23  0.39    32
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.37u 0.09s 15.46t   Elapsed:  00:00:01
  Total cpu time:  15.37u 0.09s 15.46t   Elapsed:  00:00:01
  Start:  Sat May 11 00:29:02 2013   End:  Sat May 11 00:29:03 2013

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