BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047258
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
          Crystal Structures Of Plant And Mammalian 4-
          Hydroxyphenylpyruvate Dioxygenases
 pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
          Crystal Structures Of Plant And Mammalian 4-
          Hydroxyphenylpyruvate Dioxygenases
          Length = 393

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 27 STPSNAADVPEDPAFVNFFSITMTVGNSSNVA 58
          +T SN    PE   F++F S+T  VGN+   A
Sbjct: 2  TTYSNKGPKPERGRFLHFHSVTFWVGNAKQAA 33


>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
           Tuberculosis
 pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
           Tuberculosis
          Length = 646

 Score = 27.3 bits (59), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 22  DGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSS 81
           +GPL +     ADV  D A ++++   M+ G+ +  A  V   +++ T   P+ P     
Sbjct: 534 NGPLAAFVHALADVGFDVAVLDYYEHAMSAGDDAQAAAYV---EASVTIASPAQPGEAGR 590

Query: 82  H 82
           H
Sbjct: 591 H 591


>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
           Complexed With Ketoisocaproate (Kic)
 pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
           Complexed With Ketoisocaproate (Kic)
 pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
           Complexed With Bromopyruvate
 pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
           Complexed With Bromopyruvate
 pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
           Complexed With Citrate And Mn2+
 pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
           Complexed With Citrate And Mn2+
          Length = 644

 Score = 27.3 bits (59), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 22  DGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTTYVPSHPASVSS 81
           +GPL +     ADV  D A ++++   M+ G+ +  A  V   +++ T   P+ P     
Sbjct: 532 NGPLAAFVHALADVGFDVAVLDYYEHAMSAGDDAQAAAYV---EASVTIASPAQPGEAGR 588

Query: 82  H 82
           H
Sbjct: 589 H 589


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.126    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,273,740
Number of Sequences: 62578
Number of extensions: 134076
Number of successful extensions: 166
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)