Query 047258
Match_columns 172
No_of_seqs 37 out of 39
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2868 Decapping enzyme compl 96.4 0.014 3.1E-07 53.0 7.6 154 1-171 144-327 (335)
2 COG5088 SOH1 Rad5p-binding pro 30.2 31 0.00068 27.4 1.4 17 1-17 9-26 (114)
3 KOG4672 Uncharacterized conser 14.8 4.6E+02 0.01 25.5 6.0 25 134-158 330-354 (487)
4 KOG1945 Protein phosphatase 1 7.1 3.2E+02 0.0069 25.9 2.1 21 136-156 33-53 (377)
5 TIGR03883 DUF2342_F420 unchara 6.5 1.9E+02 0.0042 26.6 0.3 19 6-26 234-252 (346)
6 PF15453 Pilt: Protein incorpo 6.4 3.5E+02 0.0076 25.1 1.9 26 142-172 45-73 (319)
7 PHA03301 envelope glycoprotein 6.4 3.5E+02 0.0075 23.8 1.8 17 142-158 188-204 (226)
8 PF05798 Phage_FRD3: Bacteriop 6.3 1.2E+02 0.0027 22.5 -0.8 11 18-28 39-49 (75)
9 TIGR03624 putative hydrolase. 6.2 2.1E+02 0.0045 26.3 0.3 20 5-26 232-251 (345)
10 PF11386 VERL: Vitelline envel 5.5 1.8E+02 0.0039 21.9 -0.3 16 11-26 20-35 (78)
No 1
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=96.36 E-value=0.014 Score=52.97 Aligned_cols=154 Identities=19% Similarity=0.065 Sum_probs=86.5
Q ss_pred CCCCCCchhhhhhhhhhhhccCCCCCCCCCCCCCCCCChhhhhhhhhcccccCCCCcccccccccCCCcc--cCCCC---
Q 047258 1 KVKSPSIRFEELEALLTMAVMDGPLESTPSNAADVPEDPAFVNFFSITMTVGNSSNVAICVQPYQSNTTT--YVPSH--- 75 (172)
Q Consensus 1 kv~s~kSEFEELEAvPt~a~~eGPLEps~s~~~d~~dd~~~~nfFs~a~~iG~~s~~~~~~q~~qs~~~s--v~ss~--- 75 (172)
|.++.+.+++++++-..+++|++..+. +||+-++++|+..+.++|--... .+.++++++.- .+..+
T Consensus 144 ~~sss~~~~~s~~~p~~i~~m~~~a~~--------~~ep~~v~~~~~~~~l~nl~~~~-~~~p~~s~s~~~~qP~~~~~l 214 (335)
T KOG2868|consen 144 ANSSSQIPPNSVVAPRDIFNMLEKAKD--------PDEPKGVPVKSPTVDLKNLIKES-AGIPIHSSSQRQNQPEQIKQL 214 (335)
T ss_pred ccCCccCCcccccCchhhhhhhhhccC--------CCCCcccccCCcccchhhhcccc-cCCccccccccccCcchhccc
Confidence 456789999999999999999999665 68888889988888888544332 44555553111 01000
Q ss_pred --CCCcccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCc---------------CCCC------CCCCCCCCCCCC
Q 047258 76 --PASVSSHIVPTLQIPSPPLSAPTPLMPPIDTSESGKLTPNL---------------PVSS------STPTASPLNPPL 132 (172)
Q Consensus 76 --~p~~~~s~~Pt~q~p~ps~sss~ppld~~~~~~s~~~~tnL---------------p~sS------~~PtApPlhP~~ 132 (172)
.....+....-++-.... .+..+..|...- -.+..-+| ..+| .+++.+.|....
T Consensus 215 ~~~ep~at~~~~~~~~~~~~-~s~~~~~~~~qe--~~~s~s~i~~~~~~~~~~s~t~~~~~s~~~~~~~~~~~~~l~~~~ 291 (335)
T KOG2868|consen 215 TEQEPKATAAPDELPKALIL-SSESPLNDLQQE--FINSTSAIPIAQVSTKPLSPTEGDVSSALIEGQILPTLPALFVVG 291 (335)
T ss_pred cccCcccccCccccCCcccc-cccCChhhhhhh--hhhcccCcchhhccccccCCCCCCCccccccCCcccccccccccC
Confidence 111111111222111111 111111111100 01111122 1111 166666666655
Q ss_pred C--CCCCCCCCcccCCCCCCCCCCCCCCcCCCCCCcccccC
Q 047258 133 S--LQWPNGGPVLQTFPPPTPPPSLTPAFTSNNGPFISKKK 171 (172)
Q Consensus 133 ~--~~~pYGtPlLQPFPPP~PppSLtPa~~~~~~pviSRDk 171 (172)
. +++.||+++++.|..+++++.|... +. ++.|++
T Consensus 292 s~~q~~~~~~~~~~~~~~~~~~pt~p~~--p~---~~~~~~ 327 (335)
T KOG2868|consen 292 SGEQPPSLNPEQFISPNAPTPSPTLPFQ--PQ---QAYVTA 327 (335)
T ss_pred CCCCCcccCcccccCCCCCCCCCCcCCC--Cc---ccccch
Confidence 4 5699999999999999999999888 32 555554
No 2
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=30.21 E-value=31 Score=27.39 Aligned_cols=17 Identities=41% Similarity=0.514 Sum_probs=13.8
Q ss_pred CCCCCCchhh-hhhhhhh
Q 047258 1 KVKSPSIRFE-ELEALLT 17 (172)
Q Consensus 1 kv~s~kSEFE-ELEAvPt 17 (172)
|+|+.+|.|| |||=|=.
T Consensus 9 ~~p~s~sRFE~ELEFvQ~ 26 (114)
T COG5088 9 ATPSSDSRFEVELEFVQS 26 (114)
T ss_pred CCCCCCchhHHHHHHHHH
Confidence 6888999998 8887743
No 3
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=14.82 E-value=4.6e+02 Score=25.55 Aligned_cols=25 Identities=48% Similarity=0.980 Sum_probs=13.4
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCC
Q 047258 134 LQWPNGGPVLQTFPPPTPPPSLTPA 158 (172)
Q Consensus 134 ~~~pYGtPlLQPFPPP~PppSLtPa 158 (172)
.|++||-|.=-.||||.+++-.-|-
T Consensus 330 ~q~p~~Pp~~~l~Pppp~p~p~~PP 354 (487)
T KOG4672|consen 330 FQPPYGPPPGMLFPPPPPPPPMRPP 354 (487)
T ss_pred CCCCCCCCCcccCCCCCCCCCCCCC
Confidence 5666775553346665555444443
No 4
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=7.06 E-value=3.2e+02 Score=25.86 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.0
Q ss_pred CCCCCCcccCCCCCCCCCCCC
Q 047258 136 WPNGGPVLQTFPPPTPPPSLT 156 (172)
Q Consensus 136 ~pYGtPlLQPFPPP~PppSLt 156 (172)
+.+=.|-||+-|||.+|+-+.
T Consensus 33 ~s~~~p~~q~~ppp~~p~~~~ 53 (377)
T KOG1945|consen 33 PSFYSPRLQRQPPPPLPPKPP 53 (377)
T ss_pred CCcCCcccCCCCCCCCCCCcc
Confidence 455689999999888877554
No 5
>TIGR03883 DUF2342_F420 uncharacterized protein, coenzyme F420 biosynthesis associated. protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure.
Probab=6.48 E-value=1.9e+02 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=14.5
Q ss_pred CchhhhhhhhhhhhccCCCCC
Q 047258 6 SIRFEELEALLTMAVMDGPLE 26 (172)
Q Consensus 6 kSEFEELEAvPt~a~~eGPLE 26 (172)
|--|++||++ |++|||=-|
T Consensus 234 ~aal~rLet~--maLvEGwvd 252 (346)
T TIGR03883 234 REALDRLQAL--MTLLEGHAD 252 (346)
T ss_pred HHHHHHHHHH--HHHHhhHHH
Confidence 4568999987 889998543
No 6
>PF15453 Pilt: Protein incorporated later into Tight Junctions
Probab=6.44 E-value=3.5e+02 Score=25.08 Aligned_cols=26 Identities=42% Similarity=0.779 Sum_probs=17.9
Q ss_pred cccCCCCCCCCCCCCCCcCCCCCCcc--c-ccCC
Q 047258 142 VLQTFPPPTPPPSLTPAFTSNNGPFI--S-KKKV 172 (172)
Q Consensus 142 lLQPFPPP~PppSLtPa~~~~~~pvi--S-RDkV 172 (172)
-|-|+|.|.||..|=|. +-|| | -|||
T Consensus 45 kl~pYptp~pp~plYpg-----rkViefssedKv 73 (319)
T PF15453_consen 45 KLSPYPTPPPPHPLYPG-----RKVIEFSSEDKV 73 (319)
T ss_pred hcCCCCCCCCCCcCCCC-----ceeeecccccce
Confidence 36677878888878776 5553 3 6776
No 7
>PHA03301 envelope glycoprotein L; Provisional
Probab=6.36 E-value=3.5e+02 Score=23.85 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.9
Q ss_pred cccCCCCCCCCCCCCCC
Q 047258 142 VLQTFPPPTPPPSLTPA 158 (172)
Q Consensus 142 lLQPFPPP~PppSLtPa 158 (172)
-+|||++-+|++.++++
T Consensus 188 ~~qp~~~atp~~~~~~~ 204 (226)
T PHA03301 188 SPQPKSLATPPPVAAPS 204 (226)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 46999999999999886
No 8
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=6.28 E-value=1.2e+02 Score=22.51 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=8.2
Q ss_pred hhccCCCCCCC
Q 047258 18 MAVMDGPLEST 28 (172)
Q Consensus 18 ~a~~eGPLEps 28 (172)
..+++||||--
T Consensus 39 ~i~i~GPle~l 49 (75)
T PF05798_consen 39 QIVIEGPLEDL 49 (75)
T ss_pred EEEEeccHHHH
Confidence 45789999843
No 9
>TIGR03624 putative hydrolase. Members of this protein family have a phylogenetic distribution skewed toward the Actinobacteria (high GC Gram-positive bacteria), but with a few members occuring in the Archaea and Chloroflexi. The function is unknown.
Probab=6.16 E-value=2.1e+02 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=14.9
Q ss_pred CCchhhhhhhhhhhhccCCCCC
Q 047258 5 PSIRFEELEALLTMAVMDGPLE 26 (172)
Q Consensus 5 ~kSEFEELEAvPt~a~~eGPLE 26 (172)
.|--|++||++ |++|||=-+
T Consensus 232 Q~aal~rLet~--maLvEGwvd 251 (345)
T TIGR03624 232 QREALDRLETL--MTLVEGWAD 251 (345)
T ss_pred HHHHHHHHHHH--HHHHhhHHH
Confidence 35568999987 889998533
No 10
>PF11386 VERL: Vitelline envelope receptor for lysin; InterPro: IPR021526 VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation [].
Probab=5.53 E-value=1.8e+02 Score=21.87 Aligned_cols=16 Identities=31% Similarity=0.327 Sum_probs=12.7
Q ss_pred hhhhhhhhhccCCCCC
Q 047258 11 ELEALLTMAVMDGPLE 26 (172)
Q Consensus 11 ELEAvPt~a~~eGPLE 26 (172)
++--.|.|.||+||+.
T Consensus 20 ~~~~~pg~CVf~GPY~ 35 (78)
T PF11386_consen 20 KLLDSPGMCVFWGPYS 35 (78)
T ss_pred ccCCCCccEEEecCcc
Confidence 4446789999999975
Done!