Query 047258
Match_columns 172
No_of_seqs 37 out of 39
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e0f_I Haemadin, factor IIA; c 29.0 9.6 0.00033 25.7 -0.4 10 4-13 42-51 (57)
2 3bpj_A Eukaryotic translation 11.4 71 0.0024 22.2 0.8 14 3-16 10-23 (80)
3 1q2f_A PNC27; P53 protein, MDM 6.1 1.8E+02 0.0061 17.7 0.9 13 3-15 2-14 (32)
4 3cmn_A Putative hydrolase; PSI 4.6 1.5E+02 0.005 26.3 -0.4 16 6-23 251-266 (372)
5 2ko5_A Ring finger protein Z; 4.3 5E+02 0.017 19.2 2.5 19 120-138 78-97 (99)
6 2lug_A Myelin basic protein; i 3.8 5.4E+02 0.018 15.8 1.9 16 35-50 6-21 (36)
7 2ou1_A Apolipoprotein A-II; hi 3.6 1.7E+02 0.0058 20.9 -0.6 14 40-53 59-72 (77)
8 1r4v_A Hypothetical protein AQ 3.2 2.1E+02 0.0073 23.1 -0.5 13 40-52 31-43 (171)
9 3vbh_A EV71, genome polyprotei 3.1 2.7E+02 0.0092 23.9 0.0 18 35-52 74-91 (297)
10 2ka4_B P113, signal transducer 3.1 3.8E+02 0.013 18.1 0.8 7 137-143 36-42 (57)
No 1
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=28.96 E-value=9.6 Score=25.67 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=8.3
Q ss_pred CCCchhhhhh
Q 047258 4 SPSIRFEELE 13 (172)
Q Consensus 4 s~kSEFEELE 13 (172)
-.+|||||.|
T Consensus 42 kpssefeefe 51 (57)
T 1e0f_I 42 KPSSEFEEFE 51 (57)
T ss_dssp CCCCCSCCCC
T ss_pred Ccccccceee
Confidence 4679999988
No 2
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=11.43 E-value=71 Score=22.20 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=11.5
Q ss_pred CCCCchhhhhhhhh
Q 047258 3 KSPSIRFEELEALL 16 (172)
Q Consensus 3 ~s~kSEFEELEAvP 16 (172)
|.+|.|||||..+=
T Consensus 10 P~Tk~dF~~~~~~l 23 (80)
T 3bpj_A 10 PSSRDDFTEFGKLL 23 (80)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 67899999998753
No 3
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=6.15 E-value=1.8e+02 Score=17.66 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=8.9
Q ss_pred CCCCchhhhhhhh
Q 047258 3 KSPSIRFEELEAL 15 (172)
Q Consensus 3 ~s~kSEFEELEAv 15 (172)
+..+-||+||=.-
T Consensus 2 plsqq~FadLW~~ 14 (32)
T 1q2f_A 2 PLSQETFSDLWKL 14 (32)
T ss_dssp CCSSTTTTTHHHH
T ss_pred CccHHHHHHHHHH
Confidence 4456788888654
No 4
>3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein, 10492M, structural genomics, protein structure initiative; 2.25A {Chloroflexus aurantiacus j-10-fl} SCOP: d.92.1.16
Probab=4.59 E-value=1.5e+02 Score=26.34 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=12.6
Q ss_pred CchhhhhhhhhhhhccCC
Q 047258 6 SIRFEELEALLTMAVMDG 23 (172)
Q Consensus 6 kSEFEELEAvPt~a~~eG 23 (172)
|--|++||++ |+++||
T Consensus 251 r~al~rLetl--laLvEG 266 (372)
T 3cmn_A 251 RAVFDRIQAL--MSLIEG 266 (372)
T ss_dssp HHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHH--HHHHhh
Confidence 4568899987 788887
No 5
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=4.33 E-value=5e+02 Score=19.23 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=10.7
Q ss_pred CCCCCCCCC-CCCCCCCCCC
Q 047258 120 SSTPTASPL-NPPLSLQWPN 138 (172)
Q Consensus 120 S~~PtApPl-hP~~~~~~pY 138 (172)
+..|+|||. ++.....++|
T Consensus 78 ~~~PSAPP~~~~~~~~pppy 97 (99)
T 2ko5_A 78 SAAPTAPPTGAADSIRPPPY 97 (99)
T ss_dssp TTSCCCCCCSCCSCCSCCSS
T ss_pred CcCCCCCCcccCCCCCCCCC
Confidence 457888873 3334344555
No 6
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=3.79 E-value=5.4e+02 Score=15.82 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=12.1
Q ss_pred CCCChhhhhhhhhccc
Q 047258 35 VPEDPAFVNFFSITMT 50 (172)
Q Consensus 35 ~~dd~~~~nfFs~a~~ 50 (172)
..||.+.+.||....+
T Consensus 6 ~~ddnpvvhffknivs 21 (36)
T 2lug_A 6 TQDENPVVHFFKNIVT 21 (36)
T ss_dssp SCCCCHHHHHHHHHHC
T ss_pred ccCCCchhHhhhhccC
Confidence 4578899999976544
No 7
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=3.60 E-value=1.7e+02 Score=20.89 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=10.5
Q ss_pred hhhhhhhhcccccC
Q 047258 40 AFVNFFSITMTVGN 53 (172)
Q Consensus 40 ~~~nfFs~a~~iG~ 53 (172)
.+.||||..|..|.
T Consensus 59 dl~nFlS~~~~~~~ 72 (77)
T 2ou1_A 59 ELVNFLSYFVELGT 72 (77)
T ss_dssp HTTC-CHHHHHHHH
T ss_pred HHHHHHHHHcCccc
Confidence 57899999998873
No 8
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=3.19 E-value=2.1e+02 Score=23.06 Aligned_cols=13 Identities=8% Similarity=0.439 Sum_probs=10.2
Q ss_pred hhhhhhhhccccc
Q 047258 40 AFVNFFSITMTVG 52 (172)
Q Consensus 40 ~~~nfFs~a~~iG 52 (172)
-|++||..++.+.
T Consensus 31 kferlFR~aagLD 43 (171)
T 1r4v_A 31 KLDHYFRTELDID 43 (171)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccC
Confidence 6888888887765
No 9
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=3.13 E-value=2.7e+02 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.5
Q ss_pred CCCChhhhhhhhhccccc
Q 047258 35 VPEDPAFVNFFSITMTVG 52 (172)
Q Consensus 35 ~~dd~~~~nfFs~a~~iG 52 (172)
.-.|..+||||+-+.+|+
T Consensus 74 s~sEtsIE~Fl~RsacV~ 91 (297)
T 3vbh_A 74 STAETTLDSFFSRAGLVG 91 (297)
T ss_dssp BCGGGBHHHHHCSCEEEE
T ss_pred CCCcceeeeeeeeeeEEE
Confidence 345778999999888887
No 10
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=3.11 E-value=3.8e+02 Score=18.08 Aligned_cols=7 Identities=71% Similarity=1.497 Sum_probs=4.0
Q ss_pred CCCCCcc
Q 047258 137 PNGGPVL 143 (172)
Q Consensus 137 pYGtPlL 143 (172)
+||.|||
T Consensus 36 pngdPlL 42 (57)
T 2ka4_B 36 PNGDPLL 42 (57)
T ss_dssp CSSCSTT
T ss_pred cCCCccc
Confidence 4566655
Done!