Query 047258
Match_columns 172
No_of_seqs 37 out of 39
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 16:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047258.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047258hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0fi_ g.3.15.2 (I:) Haemadin 29.0 4.5 0.00033 25.7 -0.4 10 4-13 42-51 (57)
2 d1gvna_ a.8.2.1 (A:) Plasmid m 5.9 79 0.0058 21.4 0.7 9 7-15 59-67 (88)
3 d2qtva2 b.2.8.1 (A:2-44,A:391- 4.7 99 0.0072 23.0 0.7 7 8-14 1-7 (176)
4 d1pvc1_ b.121.4.1 (1:) Poliovi 4.3 86 0.0063 25.0 0.0 19 34-52 47-65 (279)
5 d2i5ha1 e.71.1.1 (A:16-195) Hy 3.9 1.1E+02 0.0083 22.7 0.4 16 37-52 96-111 (180)
6 d1fpn1_ b.121.4.1 (1:) Rhinovi 3.7 1E+02 0.0075 24.4 0.0 19 34-52 46-64 (269)
7 d1oopa_ b.121.4.1 (A:) Swine v 3.5 1.1E+02 0.0079 24.2 0.0 21 32-52 43-63 (271)
8 d1d4m1_ b.121.4.1 (1:) Human e 3.5 1.1E+02 0.0079 24.5 0.0 19 34-52 57-75 (284)
9 d1hlva2 a.4.1.7 (A:67-131) DNA 3.4 1.6E+02 0.012 17.6 0.8 11 6-16 5-15 (65)
10 d1ncqa_ b.121.4.1 (A:) Rhinovi 3.3 1.1E+02 0.0083 24.1 -0.0 16 37-52 47-62 (273)
No 1
>d1e0fi_ g.3.15.2 (I:) Haemadin {Indian leech (Haemadipsa sylvestris) [TaxId: 13555]}
Probab=28.96 E-value=4.5 Score=25.67 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=8.3
Q ss_pred CCCchhhhhh
Q 047258 4 SPSIRFEELE 13 (172)
Q Consensus 4 s~kSEFEELE 13 (172)
-.+|||||.|
T Consensus 42 kpssefeefe 51 (57)
T d1e0fi_ 42 KPSSEFEEFE 51 (57)
T ss_dssp CCCCCSCCCC
T ss_pred Ccccccceee
Confidence 4679999988
No 2
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=5.85 E-value=79 Score=21.36 Aligned_cols=9 Identities=44% Similarity=0.674 Sum_probs=6.9
Q ss_pred chhhhhhhh
Q 047258 7 IRFEELEAL 15 (172)
Q Consensus 7 SEFEELEAv 15 (172)
--||||||+
T Consensus 59 ~sleELeai 67 (88)
T d1gvna_ 59 YSLEELQAV 67 (88)
T ss_dssp SCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 348999986
No 3
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.68 E-value=99 Score=23.04 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=5.2
Q ss_pred hhhhhhh
Q 047258 8 RFEELEA 14 (172)
Q Consensus 8 EFEELEA 14 (172)
||||||+
T Consensus 1 df~~~E~ 7 (176)
T d2qtva2 1 DFETNED 7 (176)
T ss_dssp CHHHHHH
T ss_pred ChhHhhc
Confidence 5788876
No 4
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]}
Probab=4.27 E-value=86 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCCCChhhhhhhhhccccc
Q 047258 34 DVPEDPAFVNFFSITMTVG 52 (172)
Q Consensus 34 d~~dd~~~~nfFs~a~~iG 52 (172)
..-+|.++||||+=+++|+
T Consensus 47 hsrsEtsIEnFl~RsacV~ 65 (279)
T d1pvc1_ 47 RSRSESTIESFFARGACVA 65 (279)
T ss_dssp CBCGGGBHHHHHCSCEEEE
T ss_pred cCcchhhHHHhhccceEEE
Confidence 3456779999998888776
No 5
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.85 E-value=1.1e+02 Score=22.73 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=10.8
Q ss_pred CChhhhhhhhhccccc
Q 047258 37 EDPAFVNFFSITMTVG 52 (172)
Q Consensus 37 dd~~~~nfFs~a~~iG 52 (172)
+|.-|++||+.|-.|.
T Consensus 96 ne~~FV~FfN~A~pit 111 (180)
T d2i5ha1 96 DEKKYVDFFNKADSIT 111 (180)
T ss_dssp THHHHHHHHC--CCBC
T ss_pred ChhhheeeeecCCccc
Confidence 4557999999987765
No 6
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}
Probab=3.68 E-value=1e+02 Score=24.42 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCCCChhhhhhhhhccccc
Q 047258 34 DVPEDPAFVNFFSITMTVG 52 (172)
Q Consensus 34 d~~dd~~~~nfFs~a~~iG 52 (172)
..-+|.++||||+=+++|+
T Consensus 46 ~s~sEtsIE~F~gRsacV~ 64 (269)
T d1fpn1_ 46 QTRDEMSLESFLGRSGCIH 64 (269)
T ss_dssp CBCGGGBHHHHHCSCEEEE
T ss_pred cCccceehHhhhcceeEEE
Confidence 4456779999998888875
No 7
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=3.54 E-value=1.1e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.3
Q ss_pred CCCCCCChhhhhhhhhccccc
Q 047258 32 AADVPEDPAFVNFFSITMTVG 52 (172)
Q Consensus 32 ~~d~~dd~~~~nfFs~a~~iG 52 (172)
....-.|.++||||+=+++||
T Consensus 43 n~hs~sETsIE~F~~RsacV~ 63 (271)
T d1oopa_ 43 NYHSRSESTVENFLCRSACVF 63 (271)
T ss_dssp CCCCCGGGBHHHHHCSCEEEE
T ss_pred CcCCccccchhhhhhhhheeE
Confidence 345557889999998888877
No 8
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
Probab=3.53 E-value=1.1e+02 Score=24.46 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.0
Q ss_pred CCCCChhhhhhhhhccccc
Q 047258 34 DVPEDPAFVNFFSITMTVG 52 (172)
Q Consensus 34 d~~dd~~~~nfFs~a~~iG 52 (172)
..-+|.++||||+=++++|
T Consensus 57 hs~sEtsIE~FlgRsacV~ 75 (284)
T d1d4m1_ 57 HSRSESTVENFLGRSACVY 75 (284)
T ss_dssp CCCGGGBHHHHHCSCEEEE
T ss_pred cCcchhhHHHHhhhhheeE
Confidence 4456778999998888776
No 9
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.43 E-value=1.6e+02 Score=17.62 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=7.4
Q ss_pred Cchhhhhhhhh
Q 047258 6 SIRFEELEALL 16 (172)
Q Consensus 6 kSEFEELEAvP 16 (172)
++.|||||.+-
T Consensus 5 ~~~~~~lE~~L 15 (65)
T d1hlva2 5 LSPYDKLEGLL 15 (65)
T ss_dssp CCTTHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 46788887653
No 10
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=3.33 E-value=1.1e+02 Score=24.07 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred CChhhhhhhhhccccc
Q 047258 37 EDPAFVNFFSITMTVG 52 (172)
Q Consensus 37 dd~~~~nfFs~a~~iG 52 (172)
+|.++|+||+=++++|
T Consensus 47 sETsiE~F~~Rsa~V~ 62 (273)
T d1ncqa_ 47 SETDVECFLGRAACVH 62 (273)
T ss_dssp GGGBHHHHSCSCEEEE
T ss_pred cccchhhhhhhhheEE
Done!