BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047259
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
++ G +YFT S Y + + G+L+KYDP +ETT+L + + G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191
Query: 65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
+S D +FV+V E + +YWL+GP++G E ++ +P P NI DG FWV+
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
++ G +YFT S Y + + G+L+KYDP +ETT+L + + G
Sbjct: 123 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 182
Query: 65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
+S D +FV+V E + +YWL+GP++G E ++ +P P NI DG FWV+
Sbjct: 183 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
++ G +YFT S Y + G+L KYDP +ETT+L + + G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
+S D +FV+V E + +YWL+GP++G E ++ +P P NI DG FWV+
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
ND++ S G YFT + Y+ P G + P+ T + + ANG
Sbjct: 138 NDMVFDSKGGFYFT-DFRGYST----------NPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 63 VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP------GGPDNINLAPDGS 116
+ALS DE + V E+ R R L+ ++ F +P GPD+ + D +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDN 245
Query: 117 FWVALIKMNQTGVRAIQSCP---------DKWKLLQA-YPELI---NLLIPLGND 158
+VA+ + V + P D+ +L++ +P+ I N LI ND
Sbjct: 246 LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
+D++ S G YFT + Y+ P G + P+ T + + ANG
Sbjct: 138 DDMVFDSKGGFYFT-DFRGYST----------NPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 63 VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP------GGPDNINLAPDGS 116
+ALS DE + V E+ R R L+ ++ F +P GPD+ + D +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDN 245
Query: 117 FWVALIKMNQTGVRAIQSCP---------DKWKLLQA-YPELI---NLLIPLGND 158
+VA+ + V + P D+ +L++ +P+ I N LI ND
Sbjct: 246 LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 169
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 230 GMDFDEDNNLLVA 242
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
+D + S G YFT + Y+ P G + P+ T + + ANG
Sbjct: 138 DDXVFDSKGGFYFT-DFRGYST----------NPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 63 VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP------GGPDNINLAPDGS 116
+ALS DE + V E+ R R L+ ++ F +P GPD+ + D +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDN 245
Query: 117 FWVA 120
+VA
Sbjct: 246 LYVA 249
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F NG+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMSFDEDNNLLVA 240
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 49 ETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRY-----WLKGPRQGRLESFIEHLP 103
+ V+ EGF FANG+ +S D +V + E + Y W P R+ SF +
Sbjct: 212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL--RVLSFDTLV- 268
Query: 104 GGPDNINLAP-DGSFWVA 120
DNI++ P G WV
Sbjct: 269 ---DNISVDPVTGDLWVG 283
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 10 DGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHEGFYFANG 62
+G+L+ T + + PA+Y + + E GQ+++ D F F NG
Sbjct: 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------TAFQFPNG 176
Query: 63 VALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPD 114
+A+ + ++V E+ + Y +KGP + + H+P GG D ++ D
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236
Query: 115 GSFWVA 120
+ VA
Sbjct: 237 NNLLVA 242
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 118 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 167
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F +G+A+ + ++V E+ + Y +KGP + + H+P GG D
Sbjct: 168 AFQFPDGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 227
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 228 GMDFDEDNNLLVA 240
>pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis, Using X-Rays From The
Compact L Source
Length = 142
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 62 GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVAL 121
G A++ E F V ES K Y P G++ L G P +N P G+ W+
Sbjct: 57 GTAVTAGETFGEV-ESTKSVSDLY---APISGKVSEVNSDLDGTPQLVNSDPYGAGWLLD 112
Query: 122 IKMNQTGVRAIQSC 135
I+++ + V A++S
Sbjct: 113 IQVDSSDVAALESA 126
>pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis
Length = 155
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 62 GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVAL 121
G A++ E F V ES K Y P G++ L G P +N P G+ W+
Sbjct: 70 GTAVTAGETFGEV-ESTKSVSDLY---APISGKVSEVNSDLDGTPQLVNSDPYGAGWLLD 125
Query: 122 IKMNQTGVRAIQSC 135
I+++ + V A++S
Sbjct: 126 IQVDSSDVAALESA 139
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 10 DGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHEGFYFANG 62
+G+L+ T + + PA+Y + + E GQ+++ D F F NG
Sbjct: 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------TAFQFPNG 176
Query: 63 VALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPD 114
+A+ + ++V E+ + Y +KGP + + H+P GG + ++ D
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGANGMDFDED 236
Query: 115 GSFWVA 120
+ VA
Sbjct: 237 NNLLVA 242
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHE 55
ND +G+L+ T + + PA+Y + + E GQ+++ D
Sbjct: 120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------T 169
Query: 56 GFYFANGVALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPD 107
F F +G+A+ + ++V E+ + Y +KGP + + H+P GG +
Sbjct: 170 AFQFPDGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAN 229
Query: 108 NINLAPDGSFWVA 120
++ D + VA
Sbjct: 230 GMDFDEDNNLLVA 242
>pdb|3RWL|A Chain A, Structure Of P450pyr Hydroxylase
Length = 426
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 74 VCESWKFR------CRRY----WLKGPRQGRLESFIEHLPGGPDNINLAPD---GSFWVA 120
V ESW R C Y W + + I L P N+ P+ G+ +
Sbjct: 203 VVESWDQRKTELLECAAYFQVLWNERVNKDPGNDLISMLAHSPATRNMTPEEYLGNVLLL 262
Query: 121 LIKMNQT-------GVRAIQSCPDKWKLLQAYPELINLLIP 154
++ N T GV A+ PD++ L+A P L+ ++P
Sbjct: 263 IVGGNDTTRNSMTGGVLALHKNPDQFAKLKANPALVETMVP 303
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 107 DNINLAPDGS--FWVALIKMN------QTGVRAIQS-CPDKWKLLQAYPELINLLIPLGN 157
+ +++APDG+ + AL N Q G+ +I C D + A P I I G
Sbjct: 214 NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGA 273
Query: 158 DAGARIVK 165
D GA++V+
Sbjct: 274 DCGAKVVE 281
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 107 DNINLAPDGS--FWVALIKMN------QTGVRAIQS-CPDKWKLLQAYPELINLLIPLGN 157
+ +++APDG+ + AL N Q G+ +I C D + A P I I G
Sbjct: 214 NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGA 273
Query: 158 DAGARIVK 165
D GA++V+
Sbjct: 274 DCGAKVVE 281
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI--NLA 112
+G FA+G A++ DEN V +S K + + G R + + + H G + L
Sbjct: 448 KGNEFASGTAINYDENLVTDKKSSKQELAKNCVVGTR-FKSQPVVRHSEGLWMHFGDRLV 506
Query: 113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH 169
DG F + + T + L + +I+ P G D +RI + H
Sbjct: 507 TDGRFRIIVFAGKATDATQMSRIKKFAAYLDSENSVISRYTPKGADRNSRIDVITIH 563
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI--NLA 112
+G FA+G A++ DEN V +S K + + G R + + + H G + L
Sbjct: 447 KGNEFASGTAINYDENLVTDKKSSKQELAKNCVVGTR-FKSQPVVRHSEGLWMHFGDRLV 505
Query: 113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH 169
DG F + + T + L + +I+L P +D +RI + H
Sbjct: 506 TDGRFRIIVFAGKATDATQMSRIKKFSAYLDSENSVISLYTPKVSDRNSRIDVITIH 562
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 10 DGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHEGFYFANG 62
+G+L+ T + + PA+Y + + E GQ+++ D F F +G
Sbjct: 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------TAFQFPDG 176
Query: 63 VALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPD 114
+A+ + ++V E+ + Y +KGP + + H+P GG + ++ D
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGANGMDFDED 236
Query: 115 GSFWVA 120
+ VA
Sbjct: 237 NNLLVA 242
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 10 DGSLYFTVSSKKYTPAEYYKDLVEG-------KPHGQLLKYDPELEETTVLHEGFYFANG 62
+G+L+ T + + PA+Y + + E GQ+++ D F F +G
Sbjct: 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD----------TAFQFPDG 176
Query: 63 VALSKDENF----VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPD 114
+A+ + ++V E+ + Y +KGP + + H+P GG + ++ D
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGANGMDFDED 236
Query: 115 GSFWVA 120
+ VA
Sbjct: 237 NNLLVA 242
>pdb|3D33|A Chain A, Crystal Structure Of A Duf3244 Family Protein With An
Immunoglobulin- Like Beta-Sandwich Fold (Bvu_0276) From
Bacteroides Vulgatus Atcc 8482 At 1.70 A Resolution
pdb|3D33|B Chain B, Crystal Structure Of A Duf3244 Family Protein With An
Immunoglobulin- Like Beta-Sandwich Fold (Bvu_0276) From
Bacteroides Vulgatus Atcc 8482 At 1.70 A Resolution
Length = 108
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKY 43
+ ND+ E S Y T+S + PAE YK + G P G L Y
Sbjct: 65 YENDIPEVQ--SAYITISIANF-PAEEYKLEITGTPSGHLTGY 104
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG----GPDNINLAP 113
+ NG L+K + ++ C R R G G ES + G P+++ LAP
Sbjct: 69 HHQNGHCLNK-QGHLIACSHGLRRLERQREPG---GEWESIADSFEGKKLNSPNDVCLAP 124
Query: 114 DGSFWVA 120
DGS W +
Sbjct: 125 DGSLWFS 131
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of
Human Sulfite Oxidase
Length = 82
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 98 FIEHLPGGPDNINLAPDG---SFWVALIKMNQTGVRAI 132
F++ PGGP + LA G FW NQ+ VR +
Sbjct: 36 FVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVREL 73
>pdb|1Q5M|A Chain A, Binary Complex Of Rabbit 20alpha-Hydroxysteroid
Dehydrogenase With Nadph
pdb|1Q5M|B Chain B, Binary Complex Of Rabbit 20alpha-Hydroxysteroid
Dehydrogenase With Nadph
Length = 322
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 134 SCPDKWKLLQA-YPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATY 183
S D K LQ Y +L + P G I+ D HGK I D D AT+
Sbjct: 97 SLEDSLKNLQLDYVDLYIIHFPTALKPGVEIIPTDEHGKAIFDTVDICATW 147
>pdb|1Q13|A Chain A, Crystal Structure Of Rabbit 20alpha Hyroxysteroid
Dehydrogenase In Ternary Complex With Nadp And
Testosterone
pdb|1Q13|B Chain B, Crystal Structure Of Rabbit 20alpha Hyroxysteroid
Dehydrogenase In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 134 SCPDKWKLLQA-YPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATY 183
S D K LQ Y +L + P G I+ D HGK I D D AT+
Sbjct: 98 SLEDSLKNLQLDYVDLYIIHFPTALKPGVEIIPTDEHGKAIFDTVDICATW 148
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 150 NLLIPLGNDAGARIVKVD-----THGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQS 204
NL + LG D G +++ VD + +++ +DP+ T + ED +YM +
Sbjct: 22 NLSVALG-DRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80
Query: 205 KFV 207
+V
Sbjct: 81 VYV 83
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 98 FIEHLPGGPDNINLAPDGS---FWVALIKMNQTGVRAIQSCPDKWKLLQAY 145
F+E PGGPD I LA G+ FW + A+ P +LLQ Y
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWA---------LYAVHGEPHVLELLQQY 77
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 98 FIEHLPGGPDNINLAPDGS---FWVALIKMNQTGVRAIQSCPDKWKLLQAY 145
F+E PGGPD I LA G+ FW + A+ P +LLQ Y
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWA---------LYAVHGEPHVLELLQQY 77
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 98 FIEHLPGGPDNINLAPDGS---FWVALIKMNQTGVRAIQSCPDKWKLLQAY 145
F+E PGGPD I LA G+ FW + A+ P +LLQ Y
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWA---------LYAVHGEPHVLELLQQY 77
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 98 FIEHLPGGPDNINLAPDGS---FWVALIKMNQTGVRAIQSCPDKWKLLQAY 145
F+E PGGPD I LA G+ FW + A+ P +LLQ Y
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWA---------LYAVHGEPHVLELLQQY 77
>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s
Subunit Of The First 80s In The Asymmetric Unit.
pdb|3O5H|F Chain F, Yeast 80s Ribosome. This Entry Consists Of The 60s
Subunit Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|E Chain E, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 176
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 31 LVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK 79
L+ G+ G+ + Y LE+ T+L G + NGV L + V+ S K
Sbjct: 42 LLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTK 90
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 98 FIEHLPGGPDNINLAPDGS---FWVALIKMNQTGVRAIQSCPDKWKLLQAY 145
F+E PGGPD I LA G+ FW + A+ P +LLQ Y
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWA---------LYAVHGEPHVLELLQQY 77
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 98 FIEHLPGGPDNINLAPDGS---FWVALIKMNQTGVRAIQSCPDKWKLLQAY 145
F+E PGGPD I LA G+ FW + A+ P +LLQ Y
Sbjct: 36 FVELHPGGPDKILLAAGGALEPFWA---------LYAVHGEPHVLELLQQY 77
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 32 VEGKPHGQLLKY--DPELEETTVLHEGFYFANGVALSKDENFV 72
+EGKP G + Y DPE E T H+G+Y +A ++ ++
Sbjct: 427 MEGKPVGLFVHYGKDPERTEET-WHDGYYHTGDMAWMDEDGYL 468
>pdb|1E58|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Length = 249
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 29 KDLVEGKPHGQLLK---YDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRY 85
K + E K G+LLK Y + T+VL + V D+ ++ V +SWK R Y
Sbjct: 32 KGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHY 91
Query: 86 WLKGPRQG 93
G QG
Sbjct: 92 ---GALQG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,708,490
Number of Sequences: 62578
Number of extensions: 340400
Number of successful extensions: 752
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 65
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)