Query 047259
Match_columns 225
No_of_seqs 134 out of 1563
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 4.9E-37 1.1E-41 259.6 18.9 211 1-213 162-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 5.2E-25 1.1E-29 181.9 17.6 152 1-202 87-245 (246)
3 COG3386 Gluconolactonase [Carb 99.9 2.6E-24 5.6E-29 182.4 20.8 170 1-216 112-301 (307)
4 PF03088 Str_synth: Strictosid 99.9 2.3E-22 5E-27 139.5 9.3 87 3-89 1-88 (89)
5 COG4257 Vgb Streptogramin lyas 99.7 5.2E-16 1.1E-20 126.5 14.6 159 2-222 64-227 (353)
6 KOG4499 Ca2+-binding protein R 99.7 1.9E-15 4.2E-20 120.7 16.1 153 2-203 111-275 (310)
7 PF08450 SGL: SMP-30/Gluconola 99.6 2.2E-14 4.7E-19 118.4 17.8 159 1-217 1-168 (246)
8 PLN02919 haloacid dehalogenase 99.6 6.1E-14 1.3E-18 136.5 21.9 161 1-217 684-892 (1057)
9 PLN02919 haloacid dehalogenase 99.5 8.7E-12 1.9E-16 121.6 21.1 158 1-215 569-772 (1057)
10 COG4257 Vgb Streptogramin lyas 99.4 6.8E-12 1.5E-16 102.7 14.2 155 2-215 150-307 (353)
11 TIGR02604 Piru_Ver_Nterm putat 99.4 4.2E-11 9E-16 104.7 18.9 179 1-210 15-210 (367)
12 PF01731 Arylesterase: Arylest 99.3 1.6E-11 3.4E-16 84.7 9.9 82 3-88 1-84 (86)
13 PF10282 Lactonase: Lactonase, 99.3 1.8E-10 4E-15 99.8 16.9 163 1-218 145-327 (345)
14 PRK11028 6-phosphogluconolacto 99.2 2.4E-09 5.3E-14 91.9 18.9 160 2-216 128-307 (330)
15 COG3386 Gluconolactonase [Carb 99.1 3.3E-09 7.2E-14 90.3 15.7 159 3-214 28-194 (307)
16 PF10282 Lactonase: Lactonase, 99.1 2.2E-08 4.7E-13 86.9 20.4 163 3-217 90-279 (345)
17 TIGR02604 Piru_Ver_Nterm putat 99.0 1.2E-08 2.5E-13 89.3 16.2 99 1-124 73-204 (367)
18 TIGR03606 non_repeat_PQQ dehyd 99.0 2.2E-08 4.8E-13 89.2 17.9 177 1-204 31-250 (454)
19 PRK11028 6-phosphogluconolacto 99.0 5.1E-08 1.1E-12 83.7 19.8 157 2-214 37-206 (330)
20 COG3391 Uncharacterized conser 99.0 4E-08 8.6E-13 86.4 19.2 163 1-214 117-284 (381)
21 TIGR02658 TTQ_MADH_Hv methylam 98.9 1E-07 2.3E-12 82.4 17.8 121 12-182 14-150 (352)
22 PF03022 MRJP: Major royal jel 98.9 9.5E-08 2.1E-12 80.9 16.2 147 1-203 62-255 (287)
23 COG3391 Uncharacterized conser 98.9 1.6E-07 3.5E-12 82.6 17.9 157 1-215 75-241 (381)
24 PF07995 GSDH: Glucose / Sorbo 98.9 8.1E-08 1.8E-12 82.9 15.0 159 2-206 4-204 (331)
25 COG2706 3-carboxymuconate cycl 98.9 6.7E-07 1.5E-11 75.8 19.2 168 2-221 147-329 (346)
26 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 2E-06 4.4E-11 71.5 20.9 101 2-123 33-134 (300)
27 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 8.1E-06 1.8E-10 67.8 19.9 137 39-216 138-282 (300)
28 COG2706 3-carboxymuconate cycl 98.6 6E-06 1.3E-10 70.1 17.3 164 2-217 91-278 (346)
29 PF02239 Cytochrom_D1: Cytochr 98.6 2.9E-06 6.3E-11 74.4 15.0 152 4-215 41-204 (369)
30 PF05096 Glu_cyclase_2: Glutam 98.6 2.7E-05 5.9E-10 64.5 19.5 157 1-216 46-206 (264)
31 KOG1214 Nidogen and related ba 98.5 2.5E-06 5.3E-11 79.2 13.5 156 1-215 1069-1228(1289)
32 PF02239 Cytochrom_D1: Cytochr 98.4 2.8E-05 6.2E-10 68.1 17.9 137 37-215 15-160 (369)
33 TIGR02658 TTQ_MADH_Hv methylam 98.4 8.5E-05 1.8E-09 64.5 19.0 80 1-89 48-137 (352)
34 KOG4659 Uncharacterized conser 98.4 1.5E-05 3.2E-10 77.1 15.2 153 1-213 476-691 (1899)
35 KOG4659 Uncharacterized conser 98.3 7.7E-06 1.7E-10 79.0 11.8 197 2-220 367-629 (1899)
36 KOG1520 Predicted alkaloid syn 98.3 3.6E-06 7.8E-11 72.5 8.6 131 58-217 115-253 (376)
37 PF06433 Me-amine-dh_H: Methyl 98.2 6.6E-05 1.4E-09 64.3 15.3 152 11-219 3-171 (342)
38 PRK05137 tolB translocation pr 98.2 0.00023 4.9E-09 63.7 19.5 140 37-216 225-369 (435)
39 PRK04792 tolB translocation pr 98.2 0.0002 4.4E-09 64.4 19.1 140 37-216 241-385 (448)
40 PF06977 SdiA-regulated: SdiA- 98.2 0.00013 2.9E-09 60.4 16.1 187 3-211 25-248 (248)
41 PRK05137 tolB translocation pr 98.2 0.00029 6.4E-09 63.0 19.4 79 37-119 269-349 (435)
42 PRK04792 tolB translocation pr 98.2 0.00034 7.4E-09 62.9 19.6 79 37-119 285-365 (448)
43 PF01436 NHL: NHL repeat; Int 98.2 3.5E-06 7.7E-11 45.6 3.8 28 57-85 1-28 (28)
44 PF07995 GSDH: Glucose / Sorbo 98.2 5.6E-05 1.2E-09 65.3 13.3 80 3-86 117-212 (331)
45 PRK03629 tolB translocation pr 98.1 0.00084 1.8E-08 60.1 19.9 80 37-120 266-347 (429)
46 PRK02889 tolB translocation pr 98.1 0.00082 1.8E-08 60.0 19.7 77 37-117 219-297 (427)
47 PRK04043 tolB translocation pr 98.1 0.00093 2E-08 59.6 19.5 81 37-121 212-295 (419)
48 PRK00178 tolB translocation pr 98.1 0.0011 2.3E-08 59.1 20.0 80 37-120 222-304 (430)
49 PF03088 Str_synth: Strictosid 98.1 1.7E-05 3.6E-10 55.2 6.6 86 107-215 1-89 (89)
50 PRK03629 tolB translocation pr 98.1 0.00093 2E-08 59.8 19.4 78 37-118 222-301 (429)
51 KOG1214 Nidogen and related ba 98.0 9E-05 1.9E-09 69.2 12.7 127 53-219 1063-1192(1289)
52 TIGR03032 conserved hypothetic 98.0 0.00036 7.7E-09 59.1 14.8 110 1-125 153-263 (335)
53 PRK04922 tolB translocation pr 98.0 0.001 2.2E-08 59.5 18.8 79 37-119 227-307 (433)
54 PRK04922 tolB translocation pr 98.0 0.0011 2.4E-08 59.3 18.9 78 37-118 271-350 (433)
55 PF07433 DUF1513: Protein of u 98.0 0.0015 3.3E-08 55.3 17.9 104 5-123 56-182 (305)
56 TIGR02800 propeller_TolB tol-p 97.9 0.0022 4.9E-08 56.5 19.6 78 37-118 213-292 (417)
57 PF05096 Glu_cyclase_2: Glutam 97.9 0.00031 6.8E-09 58.3 12.7 139 37-215 109-263 (264)
58 KOG1446 Histone H3 (Lys4) meth 97.9 0.0032 7E-08 52.8 18.0 144 37-220 121-269 (311)
59 COG2133 Glucose/sorbosone dehy 97.9 0.0016 3.4E-08 57.3 17.1 77 2-82 179-263 (399)
60 PRK01742 tolB translocation pr 97.9 0.0018 4E-08 57.8 18.0 76 37-116 227-304 (429)
61 PRK00178 tolB translocation pr 97.9 0.0033 7.1E-08 56.0 19.6 78 37-118 266-345 (430)
62 smart00135 LY Low-density lipo 97.8 6.8E-05 1.5E-09 44.1 5.6 38 52-89 3-40 (43)
63 TIGR02800 propeller_TolB tol-p 97.8 0.0048 1E-07 54.4 19.9 82 37-122 257-340 (417)
64 PRK04043 tolB translocation pr 97.8 0.0027 5.8E-08 56.7 18.1 150 36-221 255-408 (419)
65 PRK02888 nitrous-oxide reducta 97.8 0.00084 1.8E-08 61.9 14.0 88 38-125 296-396 (635)
66 cd00200 WD40 WD40 domain, foun 97.7 0.0043 9.2E-08 49.8 16.4 83 37-123 156-239 (289)
67 PF03022 MRJP: Major royal jel 97.7 0.0033 7.2E-08 53.3 15.8 82 3-89 4-97 (287)
68 PRK01029 tolB translocation pr 97.7 0.01 2.2E-07 53.1 19.5 80 37-116 210-293 (428)
69 PRK02889 tolB translocation pr 97.7 0.0051 1.1E-07 55.0 17.5 80 37-120 175-257 (427)
70 cd00200 WD40 WD40 domain, foun 97.7 0.015 3.2E-07 46.6 18.7 150 3-213 13-165 (289)
71 COG3211 PhoX Predicted phospha 97.6 0.00065 1.4E-08 61.4 10.9 69 57-125 416-521 (616)
72 PF05787 DUF839: Bacterial pro 97.6 0.00098 2.1E-08 61.0 11.9 130 56-201 348-520 (524)
73 PRK01742 tolB translocation pr 97.5 0.014 3E-07 52.2 18.4 79 37-119 183-263 (429)
74 COG2133 Glucose/sorbosone dehy 97.5 0.003 6.5E-08 55.6 13.6 127 54-207 127-263 (399)
75 KOG0279 G protein beta subunit 97.4 0.019 4.1E-07 47.8 16.2 50 161-215 214-264 (315)
76 PF13449 Phytase-like: Esteras 97.4 0.019 4.2E-07 49.5 17.1 135 59-215 86-253 (326)
77 PF05787 DUF839: Bacterial pro 97.4 0.0025 5.4E-08 58.4 11.8 117 2-120 352-519 (524)
78 PF06977 SdiA-regulated: SdiA- 97.4 0.0015 3.2E-08 54.2 9.3 104 3-123 121-241 (248)
79 PRK01029 tolB translocation pr 97.4 0.016 3.4E-07 52.0 16.5 96 4-118 285-385 (428)
80 PF07433 DUF1513: Protein of u 97.3 0.017 3.6E-07 49.1 15.2 140 39-201 29-180 (305)
81 PF01436 NHL: NHL repeat; Int 97.3 0.00033 7.2E-09 37.7 3.1 19 1-19 3-21 (28)
82 PRK02888 nitrous-oxide reducta 97.3 0.014 3E-07 54.1 15.4 154 36-218 213-409 (635)
83 PF02333 Phytase: Phytase; In 97.3 0.017 3.7E-07 50.7 15.1 140 39-217 130-294 (381)
84 KOG0318 WD40 repeat stress pro 97.2 0.033 7.1E-07 50.1 16.2 71 1-89 192-266 (603)
85 KOG0266 WD40 repeat-containing 97.2 0.047 1E-06 49.3 17.8 100 3-123 207-308 (456)
86 TIGR03606 non_repeat_PQQ dehyd 97.2 0.011 2.4E-07 53.1 13.2 74 49-123 21-105 (454)
87 TIGR03032 conserved hypothetic 97.2 0.0014 2.9E-08 55.6 6.9 57 2-78 205-261 (335)
88 PTZ00421 coronin; Provisional 97.1 0.11 2.3E-06 47.5 19.5 84 37-123 97-188 (493)
89 PTZ00420 coronin; Provisional 97.1 0.12 2.6E-06 48.0 19.8 62 58-123 126-187 (568)
90 COG3490 Uncharacterized protei 97.1 0.023 4.9E-07 47.7 13.1 172 35-210 137-345 (366)
91 KOG4499 Ca2+-binding protein R 97.1 0.0052 1.1E-07 50.1 9.0 112 2-123 160-275 (310)
92 KOG0266 WD40 repeat-containing 97.0 0.083 1.8E-06 47.7 17.3 122 54-217 200-322 (456)
93 PF13360 PQQ_2: PQQ-like domai 97.0 0.13 2.9E-06 41.3 17.7 51 37-89 45-95 (238)
94 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.019 4.2E-07 48.6 12.0 129 60-214 140-280 (336)
95 PRK11138 outer membrane biogen 97.0 0.093 2E-06 46.2 17.3 127 37-213 265-394 (394)
96 COG3211 PhoX Predicted phospha 97.0 0.01 2.3E-07 53.9 11.0 120 2-123 419-574 (616)
97 PF14269 Arylsulfotran_2: Aryl 97.0 0.043 9.3E-07 46.8 14.4 125 1-178 145-298 (299)
98 KOG0291 WD40-repeat-containing 96.9 0.094 2E-06 49.2 16.9 101 3-123 354-455 (893)
99 COG3204 Uncharacterized protei 96.9 0.068 1.5E-06 45.0 14.3 115 59-213 182-312 (316)
100 PTZ00420 coronin; Provisional 96.9 0.24 5.2E-06 46.0 19.2 52 37-89 147-198 (568)
101 PF13449 Phytase-like: Esteras 96.8 0.02 4.4E-07 49.4 11.6 110 2-124 87-235 (326)
102 PF13360 PQQ_2: PQQ-like domai 96.8 0.19 4E-06 40.5 17.0 133 37-213 2-140 (238)
103 PTZ00421 coronin; Provisional 96.8 0.37 8E-06 44.1 19.7 85 35-122 145-230 (493)
104 PF06433 Me-amine-dh_H: Methyl 96.8 0.059 1.3E-06 46.5 13.6 167 4-222 40-222 (342)
105 PF08662 eIF2A: Eukaryotic tra 96.7 0.073 1.6E-06 42.4 13.2 78 39-123 84-163 (194)
106 PRK13616 lipoprotein LpqB; Pro 96.7 0.092 2E-06 49.0 15.3 133 36-211 428-565 (591)
107 KOG2055 WD40 repeat protein [G 96.7 0.12 2.7E-06 45.8 14.9 140 39-223 281-427 (514)
108 KOG0289 mRNA splicing factor [ 96.6 0.17 3.7E-06 44.7 15.1 134 36-210 367-502 (506)
109 KOG1446 Histone H3 (Lys4) meth 96.6 0.34 7.3E-06 41.0 16.3 63 57-123 187-252 (311)
110 KOG0263 Transcription initiati 96.5 0.067 1.5E-06 49.9 13.0 139 34-217 513-653 (707)
111 PF14583 Pectate_lyase22: Olig 96.5 0.11 2.3E-06 45.7 13.3 160 35-213 57-234 (386)
112 TIGR02276 beta_rpt_yvtn 40-res 96.4 0.018 3.8E-07 33.5 6.0 42 67-112 1-42 (42)
113 KOG0291 WD40-repeat-containing 96.4 0.37 8E-06 45.4 17.0 100 4-123 440-541 (893)
114 PF00058 Ldl_recept_b: Low-den 96.4 0.018 3.8E-07 34.0 5.7 40 11-67 1-42 (42)
115 TIGR03300 assembly_YfgL outer 96.4 0.39 8.5E-06 41.8 16.7 125 36-210 249-376 (377)
116 KOG2110 Uncharacterized conser 96.2 0.63 1.4E-05 40.3 16.3 136 38-216 106-251 (391)
117 KOG1273 WD40 repeat protein [G 96.2 0.3 6.5E-06 41.6 14.0 55 34-89 41-96 (405)
118 PF00058 Ldl_recept_b: Low-den 96.2 0.018 3.8E-07 34.0 5.0 40 71-113 2-42 (42)
119 COG3823 Glutamine cyclotransfe 96.2 0.27 5.9E-06 39.6 13.0 118 60-215 131-261 (262)
120 COG0823 TolB Periplasmic compo 96.1 0.29 6.2E-06 43.9 14.7 102 38-178 218-323 (425)
121 TIGR02276 beta_rpt_yvtn 40-res 95.9 0.034 7.5E-07 32.2 5.5 41 9-66 1-42 (42)
122 COG1520 FOG: WD40-like repeat 95.9 0.43 9.3E-06 41.7 14.7 134 36-212 76-216 (370)
123 KOG0315 G-protein beta subunit 95.9 0.8 1.7E-05 37.9 15.5 88 35-123 143-235 (311)
124 COG4946 Uncharacterized protei 95.9 0.42 9.2E-06 42.9 14.1 85 34-122 377-462 (668)
125 TIGR03118 PEPCTERM_chp_1 conse 95.6 0.28 6.1E-06 41.7 11.5 134 55-213 20-170 (336)
126 COG3823 Glutamine cyclotransfe 95.6 0.63 1.4E-05 37.6 12.9 80 37-123 67-149 (262)
127 PRK13616 lipoprotein LpqB; Pro 95.6 1.6 3.4E-05 40.9 17.5 72 37-116 378-460 (591)
128 PF02897 Peptidase_S9_N: Proly 95.5 1.6 3.5E-05 38.5 20.8 143 37-217 149-313 (414)
129 TIGR03300 assembly_YfgL outer 95.4 1.3 2.7E-05 38.6 15.7 49 37-89 74-124 (377)
130 KOG2139 WD40 repeat protein [G 95.3 1.8 3.8E-05 37.7 16.1 133 59-219 282-437 (445)
131 KOG1215 Low-density lipoprotei 95.2 0.85 1.8E-05 44.7 15.1 157 2-215 482-641 (877)
132 COG0823 TolB Periplasmic compo 95.1 0.17 3.6E-06 45.4 9.2 83 36-122 260-344 (425)
133 PRK11138 outer membrane biogen 95.1 2.1 4.5E-05 37.7 16.1 132 37-214 78-224 (394)
134 KOG0282 mRNA splicing factor [ 95.0 0.27 5.8E-06 43.9 10.0 136 37-214 279-416 (503)
135 KOG0303 Actin-binding protein 95.0 1.1 2.3E-05 39.4 13.4 84 34-123 150-236 (472)
136 PF08662 eIF2A: Eukaryotic tra 95.0 0.26 5.6E-06 39.2 9.3 60 2-77 103-163 (194)
137 PF05694 SBP56: 56kDa selenium 95.0 0.12 2.5E-06 46.1 7.7 69 58-126 312-397 (461)
138 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 1.3 2.9E-05 40.8 14.3 42 160-203 481-523 (527)
139 KOG0973 Histone transcription 94.7 0.41 8.9E-06 46.4 11.0 103 4-125 134-241 (942)
140 KOG2055 WD40 repeat protein [G 94.5 3 6.4E-05 37.4 15.0 85 36-120 235-320 (514)
141 COG3292 Predicted periplasmic 94.5 0.34 7.3E-06 44.4 9.4 92 4-123 169-266 (671)
142 KOG0294 WD40 repeat-containing 94.4 2.9 6.2E-05 35.8 14.6 29 58-88 169-197 (362)
143 PF05694 SBP56: 56kDa selenium 94.4 0.11 2.3E-06 46.3 5.9 59 2-77 314-393 (461)
144 KOG2139 WD40 repeat protein [G 94.3 1.1 2.5E-05 38.8 11.8 99 5-123 201-301 (445)
145 KOG0286 G-protein beta subunit 94.3 2.9 6.3E-05 35.4 15.7 84 37-123 208-293 (343)
146 PRK10115 protease 2; Provision 94.3 5.2 0.00011 38.2 18.5 52 37-90 152-209 (686)
147 KOG0318 WD40 repeat stress pro 94.2 4.4 9.5E-05 37.0 16.0 84 36-123 340-425 (603)
148 COG3204 Uncharacterized protei 93.9 3.6 7.7E-05 35.0 16.3 160 4-216 90-266 (316)
149 cd00216 PQQ_DH Dehydrogenases 93.8 2.4 5.1E-05 38.7 13.9 43 160-204 415-458 (488)
150 PHA02713 hypothetical protein; 93.7 4 8.8E-05 37.9 15.3 137 37-213 366-533 (557)
151 KOG0640 mRNA cleavage stimulat 93.6 2.7 5.9E-05 35.9 12.6 69 52-123 167-236 (430)
152 COG4247 Phy 3-phytase (myo-ino 93.6 3.8 8.2E-05 34.3 13.8 83 39-124 127-226 (364)
153 PF14583 Pectate_lyase22: Olig 93.4 0.91 2E-05 40.0 9.9 62 28-89 158-225 (386)
154 KOG0272 U4/U6 small nuclear ri 93.2 5.2 0.00011 35.4 14.1 99 4-123 308-408 (459)
155 KOG0271 Notchless-like WD40 re 93.2 0.87 1.9E-05 39.8 9.2 95 3-121 371-469 (480)
156 COG4946 Uncharacterized protei 93.2 1.8 3.8E-05 39.1 11.3 82 39-123 60-147 (668)
157 KOG0271 Notchless-like WD40 re 93.0 5.1 0.00011 35.2 13.5 34 55-89 155-188 (480)
158 KOG0289 mRNA splicing factor [ 92.9 6.6 0.00014 35.0 15.5 60 60-123 350-409 (506)
159 PLN00181 protein SPA1-RELATED; 92.8 10 0.00022 36.8 18.8 100 4-123 488-596 (793)
160 KOG1407 WD40 repeat protein [F 92.6 4.7 0.0001 33.7 12.3 81 38-123 87-167 (313)
161 KOG0278 Serine/threonine kinas 92.6 1.8 3.9E-05 35.9 9.8 61 60-123 227-287 (334)
162 KOG0293 WD40 repeat-containing 92.6 3.5 7.5E-05 36.6 12.0 80 39-122 292-373 (519)
163 KOG0282 mRNA splicing factor [ 92.4 2.1 4.6E-05 38.3 10.7 61 62-123 390-452 (503)
164 KOG0639 Transducin-like enhanc 92.3 2.8 6.1E-05 38.1 11.3 60 59-125 511-574 (705)
165 PF06739 SBBP: Beta-propeller 92.3 0.1 2.2E-06 30.0 1.7 18 1-18 14-31 (38)
166 COG3490 Uncharacterized protei 92.1 0.84 1.8E-05 38.6 7.5 124 59-202 116-244 (366)
167 smart00135 LY Low-density lipo 92.1 0.34 7.4E-06 27.7 4.0 29 1-46 10-39 (43)
168 KOG3881 Uncharacterized conser 92.0 1.7 3.6E-05 38.0 9.5 88 32-123 220-310 (412)
169 PF02333 Phytase: Phytase; In 91.8 4.5 9.7E-05 35.7 12.1 67 56-123 206-280 (381)
170 COG1520 FOG: WD40-like repeat 91.8 3.3 7.1E-05 36.1 11.5 103 65-213 65-171 (370)
171 PF02897 Peptidase_S9_N: Proly 91.3 9.9 0.00021 33.5 17.1 140 37-213 201-357 (414)
172 KOG0293 WD40 repeat-containing 91.0 6.9 0.00015 34.8 12.2 105 10-123 224-332 (519)
173 KOG1539 WD repeat protein [Gen 90.9 4.6 0.0001 38.7 11.8 84 36-123 513-596 (910)
174 KOG0646 WD40 repeat protein [G 90.5 12 0.00027 33.5 13.4 136 36-216 101-250 (476)
175 PF00930 DPPIV_N: Dipeptidyl p 90.4 4.4 9.6E-05 35.1 10.9 84 35-123 257-347 (353)
176 PLN00181 protein SPA1-RELATED; 90.4 18 0.00039 35.0 19.2 54 35-89 595-649 (793)
177 KOG0918 Selenium-binding prote 90.3 1.4 2.9E-05 38.9 7.3 20 58-77 389-408 (476)
178 PHA02713 hypothetical protein; 90.3 15 0.00034 34.1 16.5 155 37-214 319-489 (557)
179 PF06739 SBBP: Beta-propeller 90.2 0.28 6E-06 28.2 2.1 19 105-123 14-32 (38)
180 KOG2919 Guanine nucleotide-bin 90.2 7.6 0.00017 33.5 11.4 136 37-214 132-282 (406)
181 KOG1274 WD40 repeat protein [G 89.8 19 0.00042 35.0 14.9 97 4-123 18-116 (933)
182 KOG1215 Low-density lipoprotei 89.8 12 0.00025 36.8 14.3 124 53-218 475-603 (877)
183 PF05935 Arylsulfotrans: Aryls 89.7 16 0.00034 33.4 16.4 147 37-215 127-303 (477)
184 KOG2048 WD40 repeat protein [G 89.5 19 0.0004 33.9 15.5 134 37-212 404-547 (691)
185 KOG0275 Conserved WD40 repeat- 88.9 11 0.00024 32.5 11.5 102 1-123 350-457 (508)
186 KOG0279 G protein beta subunit 88.8 3.1 6.8E-05 35.0 8.0 69 2-89 195-263 (315)
187 PF01731 Arylesterase: Arylest 88.7 2.3 4.9E-05 29.3 6.2 49 160-214 35-85 (86)
188 PF09826 Beta_propel: Beta pro 88.6 20 0.00044 33.1 15.7 106 81-217 249-359 (521)
189 KOG0918 Selenium-binding prote 88.6 2.1 4.5E-05 37.8 7.2 29 61-89 315-343 (476)
190 KOG4497 Uncharacterized conser 88.5 4.8 0.0001 34.8 9.1 81 36-120 69-150 (447)
191 KOG0772 Uncharacterized conser 88.3 12 0.00025 34.3 11.8 64 59-123 270-337 (641)
192 KOG0288 WD40 repeat protein Ti 88.2 18 0.00039 32.1 14.7 84 37-123 321-407 (459)
193 KOG1445 Tumor-specific antigen 88.1 7.7 0.00017 36.4 10.7 78 39-121 701-782 (1012)
194 KOG1538 Uncharacterized conser 87.9 25 0.00053 33.5 13.9 64 2-85 15-80 (1081)
195 KOG1274 WD40 repeat protein [G 87.7 29 0.00063 33.9 16.2 49 40-89 120-169 (933)
196 KOG0263 Transcription initiati 87.5 27 0.00058 33.3 14.7 79 35-119 472-551 (707)
197 KOG4441 Proteins containing BT 87.5 15 0.00032 34.4 12.8 139 37-214 348-500 (571)
198 KOG4441 Proteins containing BT 87.4 16 0.00035 34.1 12.9 125 37-201 395-529 (571)
199 PF10647 Gmad1: Lipoprotein Lp 87.3 15 0.00033 30.3 14.6 79 38-124 2-86 (253)
200 KOG0319 WD40-repeat-containing 86.9 29 0.00063 33.1 13.9 148 5-217 25-183 (775)
201 COG3292 Predicted periplasmic 86.6 13 0.00028 34.6 11.2 28 58-88 290-317 (671)
202 KOG2106 Uncharacterized conser 86.3 27 0.00058 32.0 13.2 79 36-119 220-303 (626)
203 KOG0772 Uncharacterized conser 85.8 16 0.00034 33.5 11.2 87 34-123 335-429 (641)
204 KOG1273 WD40 repeat protein [G 85.7 22 0.00049 30.6 14.6 70 105-213 155-226 (405)
205 KOG0640 mRNA cleavage stimulat 85.3 11 0.00023 32.4 9.5 98 3-123 176-281 (430)
206 PF07494 Reg_prop: Two compone 84.8 1.1 2.3E-05 22.9 2.2 16 107-122 8-23 (24)
207 KOG3881 Uncharacterized conser 84.8 11 0.00023 33.2 9.4 61 59-123 204-268 (412)
208 PF10647 Gmad1: Lipoprotein Lp 84.8 21 0.00046 29.5 14.9 65 59-123 113-185 (253)
209 KOG2096 WD40 repeat protein [G 84.5 26 0.00056 30.3 14.3 70 3-88 90-163 (420)
210 PRK13684 Ycf48-like protein; P 84.5 26 0.00056 30.3 16.0 68 49-123 205-279 (334)
211 PHA02790 Kelch-like protein; P 84.4 32 0.00069 31.3 16.3 76 38-121 331-414 (480)
212 PHA03098 kelch-like protein; P 84.3 33 0.00072 31.4 15.7 141 37-215 357-513 (534)
213 PF14517 Tachylectin: Tachylec 83.9 11 0.00023 30.9 8.7 65 55-121 127-195 (229)
214 KOG0302 Ribosome Assembly prot 83.9 30 0.00065 30.5 12.9 59 31-89 227-289 (440)
215 KOG0283 WD40 repeat-containing 82.7 46 0.001 31.9 14.9 136 35-213 389-532 (712)
216 KOG1009 Chromatin assembly com 82.2 12 0.00025 33.2 8.7 57 57-117 123-179 (434)
217 PF00930 DPPIV_N: Dipeptidyl p 81.8 8.3 0.00018 33.4 8.0 61 5-78 286-348 (353)
218 KOG4378 Nuclear protein COP1 [ 81.5 13 0.00028 33.9 8.9 60 60-123 211-270 (673)
219 KOG0268 Sof1-like rRNA process 81.5 1.4 3E-05 38.3 2.9 52 36-88 208-259 (433)
220 KOG4328 WD40 protein [Function 81.5 30 0.00065 31.2 11.0 116 59-211 371-493 (498)
221 PF07676 PD40: WD40-like Beta 81.1 4.9 0.00011 22.6 4.3 23 57-79 8-30 (39)
222 KOG0973 Histone transcription 80.6 43 0.00093 33.1 12.6 65 58-126 130-194 (942)
223 cd00216 PQQ_DH Dehydrogenases 80.5 45 0.00099 30.4 18.9 52 36-89 118-184 (488)
224 KOG0296 Angio-associated migra 79.8 42 0.0009 29.5 12.7 58 31-89 163-221 (399)
225 PHA03098 kelch-like protein; P 79.6 50 0.0011 30.2 16.3 139 37-214 310-465 (534)
226 KOG0286 G-protein beta subunit 79.5 38 0.00083 28.9 16.5 88 34-123 73-165 (343)
227 PF00400 WD40: WD domain, G-be 79.0 8.6 0.00019 21.1 5.6 31 55-86 9-39 (39)
228 PF14870 PSII_BNR: Photosynthe 78.6 41 0.0009 28.8 13.7 83 37-123 123-206 (302)
229 PF04762 IKI3: IKI3 family; I 78.6 71 0.0015 31.9 13.9 51 35-86 94-148 (928)
230 TIGR02608 delta_60_rpt delta-6 77.9 7 0.00015 24.4 4.5 46 107-182 4-49 (55)
231 PF14269 Arylsulfotran_2: Aryl 77.5 44 0.00095 28.5 17.5 123 59-215 145-291 (299)
232 PHA02790 Kelch-like protein; P 77.3 57 0.0012 29.7 16.0 81 37-123 286-371 (480)
233 KOG0281 Beta-TrCP (transducin 77.0 10 0.00022 33.1 6.6 57 58-123 321-378 (499)
234 KOG0310 Conserved WD40 repeat- 76.4 60 0.0013 29.4 12.1 30 60-89 113-142 (487)
235 KOG2314 Translation initiation 75.9 21 0.00046 33.0 8.6 84 37-123 471-557 (698)
236 KOG0265 U5 snRNP-specific prot 75.7 51 0.0011 28.2 11.1 56 33-89 191-247 (338)
237 PF11768 DUF3312: Protein of u 75.4 10 0.00022 34.9 6.6 53 34-88 277-329 (545)
238 KOG2919 Guanine nucleotide-bin 75.3 33 0.00072 29.7 9.2 32 57-88 250-281 (406)
239 PF13970 DUF4221: Domain of un 75.3 36 0.00078 29.2 9.9 60 160-219 114-192 (333)
240 smart00564 PQQ beta-propeller 75.2 6.9 0.00015 20.8 3.7 14 37-50 15-28 (33)
241 KOG0284 Polyadenylation factor 75.2 28 0.00061 31.0 8.9 99 3-123 184-284 (464)
242 KOG1963 WD40 repeat protein [G 74.9 44 0.00095 32.3 10.8 81 32-114 267-356 (792)
243 PF01011 PQQ: PQQ enzyme repea 74.8 6.8 0.00015 22.1 3.7 14 37-50 9-22 (38)
244 COG4246 Uncharacterized protei 74.4 12 0.00026 31.4 6.2 77 3-89 77-164 (340)
245 PF13570 PQQ_3: PQQ-like domai 74.3 13 0.00029 20.9 5.1 22 191-213 18-39 (40)
246 KOG0315 G-protein beta subunit 73.6 53 0.0011 27.5 16.6 84 37-123 104-187 (311)
247 KOG4378 Nuclear protein COP1 [ 73.6 72 0.0016 29.3 11.2 111 63-219 170-286 (673)
248 TIGR02171 Fb_sc_TIGR02171 Fibr 73.4 41 0.00088 33.2 10.3 53 38-90 329-387 (912)
249 KOG0265 U5 snRNP-specific prot 73.2 59 0.0013 27.9 11.1 63 58-123 48-110 (338)
250 PF05935 Arylsulfotrans: Aryls 72.6 76 0.0017 28.9 13.0 38 38-76 167-208 (477)
251 KOG0275 Conserved WD40 repeat- 72.2 65 0.0014 28.0 11.9 33 55-88 346-378 (508)
252 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.1 76 0.0016 29.4 11.7 83 35-123 438-523 (527)
253 smart00284 OLF Olfactomedin-li 72.0 58 0.0012 27.2 15.3 137 37-212 93-251 (255)
254 KOG2110 Uncharacterized conser 71.2 45 0.00098 29.2 9.2 68 4-89 178-249 (391)
255 PLN00033 photosystem II stabil 71.0 77 0.0017 28.3 16.7 84 37-123 258-347 (398)
256 KOG0301 Phospholipase A2-activ 70.0 1E+02 0.0022 29.4 14.6 111 56-213 178-288 (745)
257 KOG0296 Angio-associated migra 68.6 83 0.0018 27.7 17.6 138 35-213 125-273 (399)
258 KOG2096 WD40 repeat protein [G 68.3 81 0.0017 27.4 11.9 64 60-124 281-352 (420)
259 TIGR03074 PQQ_membr_DH membran 66.4 1E+02 0.0022 30.1 11.5 107 69-214 194-345 (764)
260 KOG1539 WD repeat protein [Gen 66.0 41 0.00088 32.7 8.5 68 3-87 580-647 (910)
261 KOG2315 Predicted translation 65.4 1.2E+02 0.0025 28.2 15.2 80 38-124 251-333 (566)
262 KOG1034 Transcriptional repres 64.8 21 0.00045 30.9 5.8 73 10-87 305-382 (385)
263 TIGR03803 Gloeo_Verruco Gloeo_ 64.7 23 0.00049 19.8 4.6 31 10-53 1-31 (34)
264 KOG2394 WD40 protein DMR-N9 [G 64.6 25 0.00054 32.4 6.5 66 2-87 293-361 (636)
265 KOG2048 WD40 repeat protein [G 63.7 1E+02 0.0022 29.2 10.4 51 37-88 496-548 (691)
266 KOG0278 Serine/threonine kinas 63.5 89 0.0019 26.2 14.7 81 37-123 164-244 (334)
267 PRK13684 Ycf48-like protein; P 63.5 98 0.0021 26.7 15.8 83 37-123 151-234 (334)
268 KOG1009 Chromatin assembly com 63.5 25 0.00055 31.1 6.2 34 37-70 144-178 (434)
269 KOG1272 WD40-repeat-containing 63.1 59 0.0013 29.5 8.5 89 30-123 255-354 (545)
270 PF14517 Tachylectin: Tachylec 62.6 50 0.0011 27.1 7.5 30 57-88 177-206 (229)
271 KOG0299 U3 snoRNP-associated p 61.8 87 0.0019 28.3 9.3 91 31-123 341-446 (479)
272 KOG0322 G-protein beta subunit 61.5 23 0.0005 29.8 5.4 67 3-86 255-321 (323)
273 KOG0283 WD40 repeat-containing 61.3 1.6E+02 0.0035 28.4 14.2 53 36-89 430-482 (712)
274 KOG0268 Sof1-like rRNA process 60.5 97 0.0021 27.3 9.1 60 61-124 191-250 (433)
275 KOG0272 U4/U6 small nuclear ri 60.1 93 0.002 27.9 9.1 83 37-123 368-450 (459)
276 KOG0316 Conserved WD40 repeat- 58.9 1.1E+02 0.0023 25.6 12.3 54 61-123 149-203 (307)
277 KOG0273 Beta-transducin family 58.7 1.4E+02 0.0029 27.3 10.0 87 32-123 292-379 (524)
278 KOG0288 WD40 repeat protein Ti 58.5 40 0.00087 30.0 6.6 45 33-77 404-451 (459)
279 KOG0294 WD40 repeat-containing 58.3 1.1E+02 0.0024 26.5 9.0 171 31-216 100-284 (362)
280 KOG0273 Beta-transducin family 57.8 1.5E+02 0.0033 27.0 14.7 98 70-212 422-522 (524)
281 KOG2106 Uncharacterized conser 57.8 1.6E+02 0.0034 27.3 16.9 58 160-221 470-528 (626)
282 KOG4649 PQQ (pyrrolo-quinoline 57.7 1.2E+02 0.0026 25.8 12.0 22 67-89 197-218 (354)
283 KOG2111 Uncharacterized conser 57.5 1.2E+02 0.0027 26.1 9.1 67 5-89 187-257 (346)
284 KOG0276 Vesicle coat complex C 57.3 1.8E+02 0.0039 27.7 12.3 31 54-84 348-378 (794)
285 KOG3914 WD repeat protein WDR4 57.2 23 0.0005 31.2 4.9 50 36-86 127-179 (390)
286 KOG1407 WD40 repeat protein [F 57.0 1.2E+02 0.0026 25.6 14.5 85 35-123 125-209 (313)
287 KOG0643 Translation initiation 56.9 1.2E+02 0.0026 25.7 15.5 109 60-208 96-215 (327)
288 KOG0295 WD40 repeat-containing 56.4 1.4E+02 0.0031 26.3 11.9 51 69-123 303-354 (406)
289 KOG0771 Prolactin regulatory e 55.2 1.5E+02 0.0033 26.3 11.7 28 57-85 186-214 (398)
290 KOG2394 WD40 protein DMR-N9 [G 54.4 40 0.00087 31.1 6.1 61 59-123 292-352 (636)
291 TIGR03548 mutarot_permut cycli 54.4 1.3E+02 0.0029 25.4 14.4 52 37-89 138-195 (323)
292 PF02191 OLF: Olfactomedin-lik 54.3 1.3E+02 0.0027 25.0 11.6 108 61-204 72-190 (250)
293 KOG0639 Transducin-like enhanc 54.1 22 0.00048 32.5 4.5 69 3-89 513-582 (705)
294 KOG0316 Conserved WD40 repeat- 54.0 1.3E+02 0.0028 25.1 12.6 65 34-99 77-142 (307)
295 KOG2321 WD40 repeat protein [G 54.0 2E+02 0.0042 27.1 11.8 55 34-89 193-259 (703)
296 PLN02193 nitrile-specifier pro 52.4 1.8E+02 0.0039 26.3 14.1 52 38-89 193-253 (470)
297 KOG1036 Mitotic spindle checkp 52.3 1.5E+02 0.0033 25.4 14.1 56 33-89 70-125 (323)
298 KOG0647 mRNA export protein (c 52.1 1.6E+02 0.0034 25.4 10.3 149 57-220 27-191 (347)
299 KOG4547 WD40 repeat-containing 52.0 2E+02 0.0044 26.7 14.0 87 33-123 75-164 (541)
300 smart00284 OLF Olfactomedin-li 50.0 1.5E+02 0.0033 24.7 10.0 102 4-123 132-244 (255)
301 KOG0285 Pleiotropic regulator 49.1 1.4E+02 0.0029 26.5 8.2 67 4-88 156-223 (460)
302 KOG0322 G-protein beta subunit 48.3 33 0.00072 28.9 4.3 57 59-119 253-309 (323)
303 PLN02153 epithiospecifier prot 48.0 1.8E+02 0.0038 24.9 14.4 53 37-89 49-110 (341)
304 KOG4649 PQQ (pyrrolo-quinoline 46.2 1.9E+02 0.004 24.6 13.0 52 37-89 114-166 (354)
305 KOG0277 Peroxisomal targeting 45.8 1.2E+02 0.0026 25.5 7.1 52 36-87 36-90 (311)
306 KOG1445 Tumor-specific antigen 45.7 2.8E+02 0.0061 26.6 11.4 57 32-89 144-201 (1012)
307 KOG0645 WD40 repeat protein [G 45.7 1.9E+02 0.0041 24.6 12.4 114 62-217 19-139 (312)
308 PLN02193 nitrile-specifier pro 45.4 2.4E+02 0.0051 25.6 13.4 51 37-89 243-303 (470)
309 PF05567 Neisseria_PilC: Neiss 45.3 68 0.0015 27.8 6.1 53 36-89 179-240 (335)
310 PF14339 DUF4394: Domain of un 45.0 1.7E+02 0.0036 24.2 7.9 52 37-89 47-104 (236)
311 PF02191 OLF: Olfactomedin-lik 44.8 1.8E+02 0.0039 24.1 16.3 139 37-212 88-246 (250)
312 KOG2315 Predicted translation 43.3 1.4E+02 0.0029 27.8 7.7 43 34-78 332-375 (566)
313 KOG0649 WD40 repeat protein [G 43.1 2E+02 0.0044 24.1 16.2 100 3-125 118-228 (325)
314 KOG3567 Peptidylglycine alpha- 42.7 45 0.00097 30.2 4.5 20 105-124 468-487 (501)
315 PF13964 Kelch_6: Kelch motif 41.9 72 0.0016 18.6 4.3 37 7-54 8-44 (50)
316 PF08553 VID27: VID27 cytoplas 41.6 86 0.0019 30.7 6.6 49 37-87 597-646 (794)
317 KOG0284 Polyadenylation factor 40.9 2.7E+02 0.0059 25.0 9.0 62 58-123 139-200 (464)
318 PF04351 PilP: Pilus assembly 40.3 74 0.0016 24.1 4.9 49 104-182 89-138 (149)
319 KOG2321 WD40 repeat protein [G 39.4 3.4E+02 0.0073 25.7 15.5 57 160-216 196-261 (703)
320 KOG1034 Transcriptional repres 38.8 2.4E+02 0.0052 24.7 8.1 87 36-126 113-203 (385)
321 KOG1963 WD40 repeat protein [G 38.4 3.9E+02 0.0085 26.2 10.6 61 59-124 253-313 (792)
322 KOG0650 WD40 repeat nucleolar 37.4 3.7E+02 0.008 25.6 10.6 87 34-123 493-587 (733)
323 PLN00033 photosystem II stabil 36.3 3.1E+02 0.0068 24.4 17.1 58 62-123 243-300 (398)
324 PF15390 DUF4613: Domain of un 35.9 3.9E+02 0.0084 25.4 10.0 70 54-123 335-404 (671)
325 PTZ00486 apyrase Superfamily; 35.9 1.4E+02 0.0031 26.1 6.5 45 160-204 134-183 (352)
326 COG4993 Gcd Glucose dehydrogen 35.6 1.4E+02 0.003 28.4 6.6 19 160-178 281-300 (773)
327 KOG0641 WD40 repeat protein [G 35.4 2.6E+02 0.0056 23.2 15.3 29 59-88 91-121 (350)
328 PF11768 DUF3312: Protein of u 35.3 3.8E+02 0.0082 25.1 10.6 60 58-123 260-319 (545)
329 COG5354 Uncharacterized protei 35.1 3.7E+02 0.0081 24.9 12.7 122 38-206 255-382 (561)
330 KOG0310 Conserved WD40 repeat- 33.4 3.8E+02 0.0082 24.5 16.0 81 40-124 135-217 (487)
331 KOG0264 Nucleosome remodeling 33.2 2.4E+02 0.0052 25.4 7.5 69 3-88 276-347 (422)
332 KOG0307 Vesicle coat complex C 33.1 1.6E+02 0.0034 29.7 6.9 56 33-88 179-240 (1049)
333 TIGR03547 muta_rot_YjhT mutatr 33.0 3.1E+02 0.0067 23.3 14.4 39 161-201 168-207 (346)
334 KOG0299 U3 snoRNP-associated p 32.8 3.8E+02 0.0083 24.4 12.7 66 5-88 208-274 (479)
335 PF12894 Apc4_WD40: Anaphase-p 32.7 1.1E+02 0.0023 18.3 3.8 28 61-89 15-42 (47)
336 KOG4532 WD40-like repeat conta 32.5 3.2E+02 0.0069 23.3 17.0 53 35-89 137-189 (344)
337 KOG2314 Translation initiation 32.4 99 0.0021 28.9 5.1 58 1-72 494-552 (698)
338 KOG0269 WD40 repeat-containing 32.3 3.4E+02 0.0074 26.4 8.7 55 35-89 107-165 (839)
339 KOG0281 Beta-TrCP (transducin 31.3 3.7E+02 0.0081 23.8 9.9 34 191-224 406-439 (499)
340 KOG1408 WD40 repeat protein [F 31.0 1.1E+02 0.0023 29.7 5.2 48 39-87 664-712 (1080)
341 KOG0319 WD40-repeat-containing 29.4 5.4E+02 0.012 25.0 14.0 89 35-123 386-483 (775)
342 PF06079 Apyrase: Apyrase; In 29.1 2.9E+02 0.0062 23.6 7.0 46 160-206 73-122 (291)
343 KOG0643 Translation initiation 28.9 3.7E+02 0.0079 22.9 17.7 112 63-214 58-178 (327)
344 PF15492 Nbas_N: Neuroblastoma 28.8 85 0.0018 26.5 3.8 28 61-89 47-74 (282)
345 PF08553 VID27: VID27 cytoplas 28.5 5.8E+02 0.013 25.2 13.0 86 36-124 502-598 (794)
346 KOG1063 RNA polymerase II elon 27.9 2.8E+02 0.0061 26.7 7.3 71 4-87 530-601 (764)
347 KOG1332 Vesicle coat complex C 27.7 1.6E+02 0.0035 24.7 5.2 52 37-88 79-134 (299)
348 KOG0306 WD40-repeat-containing 27.5 6E+02 0.013 24.9 14.8 59 60-125 511-572 (888)
349 KOG0285 Pleiotropic regulator 26.7 4.6E+02 0.0099 23.3 9.6 52 37-89 214-266 (460)
350 TIGR03548 mutarot_permut cycli 26.4 3.9E+02 0.0085 22.5 15.3 81 37-123 87-180 (323)
351 KOG4547 WD40 repeat-containing 26.4 5.4E+02 0.012 24.0 13.6 50 37-89 123-173 (541)
352 PRK14131 N-acetylneuraminic ac 26.0 4.4E+02 0.0095 22.9 11.2 40 37-76 188-228 (376)
353 KOG1188 WD40 repeat protein [G 25.7 4.6E+02 0.01 23.0 11.7 150 34-220 46-203 (376)
354 COG5276 Uncharacterized conser 25.5 4.5E+02 0.0097 22.8 11.5 60 59-123 88-147 (370)
355 COG1770 PtrB Protease II [Amin 25.4 6.2E+02 0.013 24.4 18.4 30 60-89 176-209 (682)
356 PF12120 Arr-ms: Rifampin ADP- 24.9 49 0.0011 23.1 1.5 37 12-52 32-68 (100)
357 COG5276 Uncharacterized conser 23.6 4.9E+02 0.011 22.6 17.6 58 58-123 129-190 (370)
358 PF14339 DUF4394: Domain of un 23.5 4.3E+02 0.0092 21.8 11.2 60 58-121 27-92 (236)
359 PF06903 VirK: VirK protein; 23.0 1.7E+02 0.0037 20.7 4.0 18 2-19 46-63 (100)
360 PRK14131 N-acetylneuraminic ac 22.2 5.2E+02 0.011 22.4 14.4 39 161-201 189-228 (376)
361 KOG0646 WD40 repeat protein [G 22.2 6.1E+02 0.013 23.2 15.1 111 75-212 193-306 (476)
362 PTZ00486 apyrase Superfamily; 22.1 2.3E+02 0.0049 24.9 5.3 28 61-89 113-144 (352)
363 PLN02153 epithiospecifier prot 22.0 5E+02 0.011 22.1 15.1 17 38-54 101-117 (341)
364 COG4222 Uncharacterized protei 21.9 2.4E+02 0.0051 25.2 5.5 20 160-179 165-184 (391)
365 PF10584 Proteasome_A_N: Prote 21.4 22 0.00047 18.0 -0.6 9 64-73 7-15 (23)
366 KOG0305 Anaphase promoting com 21.2 4.1E+02 0.009 24.5 7.0 49 39-88 198-247 (484)
367 PF05567 Neisseria_PilC: Neiss 21.2 3.8E+02 0.0083 23.2 6.7 54 160-215 180-241 (335)
368 KOG0303 Actin-binding protein 20.9 6.2E+02 0.013 22.8 10.2 60 60-123 134-193 (472)
369 KOG0295 WD40 repeat-containing 20.9 4.6E+02 0.0099 23.2 6.8 52 37-89 313-365 (406)
370 PRK10115 protease 2; Provision 20.9 7.5E+02 0.016 23.7 18.9 51 37-87 198-254 (686)
371 KOG4497 Uncharacterized conser 20.7 4.6E+02 0.0099 23.1 6.7 20 59-78 135-154 (447)
372 KOG1408 WD40 repeat protein [F 20.4 3.7E+02 0.0081 26.2 6.6 47 40-88 620-671 (1080)
373 KOG3914 WD repeat protein WDR4 20.2 6.2E+02 0.013 22.5 14.3 105 3-124 66-182 (390)
374 PF13970 DUF4221: Domain of un 20.0 5.5E+02 0.012 21.8 13.4 53 37-90 66-125 (333)
375 TIGR03547 muta_rot_YjhT mutatr 20.0 5.4E+02 0.012 21.8 13.6 38 38-76 85-125 (346)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=259.61 Aligned_cols=211 Identities=37% Similarity=0.649 Sum_probs=194.8
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
|.||+.++++|.|||||++.+|++.+++.++++++++||+++||+.++..+++.+++.+|||+++|||++++.+|++...
T Consensus 162 f~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ 241 (376)
T KOG1520|consen 162 FLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTA 241 (376)
T ss_pred ecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccc
Confidence 78999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh----ccCC
Q 047259 81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL----IPLG 156 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~----~~~~ 156 (225)
+|.||.+.+...++.++|++++||+||||..+++|++||+.+..++...+++..+|++|+++..+|..+..+ .+..
T Consensus 242 ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~ 321 (376)
T KOG1520|consen 242 RIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGK 321 (376)
T ss_pred eeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCC
Confidence 999999999888888999988999999999999999999999999999999999999999999987776543 2223
Q ss_pred CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259 157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
+ +..|.+.|.+|++++++++++|+.+..++.+.+++|+||+++...++|+++++.
T Consensus 322 p--~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 322 P--HSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred C--ceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence 3 678888999999999999999998888888888899999999999999999874
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.93 E-value=5.2e-25 Score=181.93 Aligned_cols=152 Identities=32% Similarity=0.501 Sum_probs=121.8
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
.|||++++++|+||||++..... .....|+||+++++ ++++.+.+++..||||+++||++.|||+++..+
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred CCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 48999999999999999973210 00112999999998 899999999999999999999999999999999
Q ss_pred EEEEEEecC--CCCCceeEEeccC--CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 81 RCRRYWLKG--PRQGRLESFIEHL--PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 81 ~I~~~~~~~--~~~~~~~~~~~~~--~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
+|++|+++. ..+...+++++.. .+.||||++|++|+|||+.+.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--------------------------------- 203 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--------------------------------- 203 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------------------------------
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------------------------------
Confidence 999999973 2355667776432 246999999999999999987
Q ss_pred CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe---CCEEEEeeC
Q 047259 157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF---EDNLYMASI 202 (225)
Q Consensus 157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~---~~~Lyv~~~ 202 (225)
.++|.+++++|+++..+..|.. .+|.+++. .++|||++.
T Consensus 204 ---~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 ---GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ---TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred ---CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 6799999999999999999832 57888874 489999975
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.6e-24 Score=182.36 Aligned_cols=170 Identities=26% Similarity=0.407 Sum_probs=131.8
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCC
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
.|||+.++++|+|||++++. +. .+..+....|+||++|+. +.++.+..+ +..||||+|||||+.||++|+..
T Consensus 112 r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 48999999999999999982 11 223345678899999986 555555554 99999999999999999999999
Q ss_pred CEEEEEEecC--CCCCcee--EEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259 80 FRCRRYWLKG--PRQGRLE--SFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL 155 (225)
Q Consensus 80 ~~I~~~~~~~--~~~~~~~--~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~ 155 (225)
++|+||+.+. ....... ++.+..+|.|||+++|++|+||++....
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~------------------------------- 233 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG------------------------------- 233 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC-------------------------------
Confidence 9999999872 2233333 3333467899999999999999744330
Q ss_pred CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCCCCe------------EEEEeCCCcc
Q 047259 156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQSKF------------VGKLPLNTPE 216 (225)
Q Consensus 156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~~~~------------i~~~~~~~~~ 216 (225)
.++|.+++|+|+++..+..|.. .+|.+++.+ ++|||++...+. +..++.....
T Consensus 234 ----g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~~~~~~~~~~~G~lf~~~~~~~G 301 (307)
T COG3386 234 ----GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGMSRMLTADPLGGGLFSLRLEVKG 301 (307)
T ss_pred ----CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCCCccccccccCceEEEEecccCC
Confidence 4599999999999999999853 356666654 999999988854 7777666553
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.88 E-value=2.3e-22 Score=139.52 Aligned_cols=87 Identities=55% Similarity=0.990 Sum_probs=73.9
Q ss_pred CcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
||++++++ |.|||||++.+|.+.+++.+++++.++|+|++||+.+++++++++++.+||||++++|+++|+|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 89999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q 047259 82 CRRYWLKG 89 (225)
Q Consensus 82 I~~~~~~~ 89 (225)
|+||+++|
T Consensus 81 i~rywl~G 88 (89)
T PF03088_consen 81 ILRYWLKG 88 (89)
T ss_dssp EEEEESSS
T ss_pred EEEEEEeC
Confidence 99999875
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.70 E-value=5.2e-16 Score=126.54 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=128.5
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
|.||+.++||.+|||.+. +|.|-++|+.+|+++... .....|.||...|||. +||+|++.
T Consensus 64 p~dvapapdG~VWft~qg-----------------~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~- 124 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQG-----------------TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL- 124 (353)
T ss_pred ccccccCCCCceEEecCc-----------------cccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-
Confidence 678999999999999987 678999999999988764 5568899999999998 99999987
Q ss_pred EEEEEEecCCCCCceeEEe---ccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259 81 RCRRYWLKGPRQGRLESFI---EHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN 157 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~---~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~ 157 (225)
.|.|++.++. ..+.|. +...+.-+-..+|++|+||.+...
T Consensus 125 aI~R~dpkt~---evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~---------------------------------- 167 (353)
T COG4257 125 AIGRLDPKTL---EVTRFPLPLEHADANLETAVFDPWGNLWFTGQI---------------------------------- 167 (353)
T ss_pred eeEEecCccc---ceEEeecccccCCCcccceeeCCCccEEEeecc----------------------------------
Confidence 9999998642 344443 112233456789999999998754
Q ss_pred CcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCcccccCCC
Q 047259 158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTPEAELAPK 222 (225)
Q Consensus 158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~ 222 (225)
+.--|+||.-..++++..|.|. .+.++|. .+|.+|+++...+.|.+++.-+..+|..|.
T Consensus 168 ---G~yGrLdPa~~~i~vfpaPqG~---gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~ 227 (353)
T COG4257 168 ---GAYGRLDPARNVISVFPAPQGG---GPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ 227 (353)
T ss_pred ---ccceecCcccCceeeeccCCCC---CCcceEECCCCcEEEEeccccceEEcccccCCcceecC
Confidence 2234899998889999999885 4566665 589999999999999999988888887664
No 6
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.69 E-value=1.9e-15 Score=120.72 Aligned_cols=153 Identities=20% Similarity=0.291 Sum_probs=121.3
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
.||--++|+|+.|..-|.. ++. . .+...|.+|.+-+. ++++++...+..+|||+|+.|.+..|+.|+.+..
T Consensus 111 ~NDgkvdP~Gryy~GtMad-~~~------~-le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMAD-FGD------D-LEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred cccCccCCCCceeeeeecc-ccc------c-ccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 4788899999999988862 221 1 13346778887775 8999999999999999999999999999999999
Q ss_pred EEEEE--ecCCCCCceeEEecc------CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259 82 CRRYW--LKGPRQGRLESFIEH------LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI 153 (225)
Q Consensus 82 I~~~~--~~~~~~~~~~~~~~~------~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~ 153 (225)
|..|+ ..++.+.+..++.+- .+-.||||++|.+|+|||+.+.
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------------------------------ 231 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------------------------------ 231 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------------------------------
Confidence 96655 555556666665541 2237999999999999999998
Q ss_pred cCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCC
Q 047259 154 PLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQ 203 (225)
Q Consensus 154 ~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~ 203 (225)
.+.|+++||. ||++..+..|.- .+|.+++.+ +-||++...
T Consensus 232 ------g~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 232 ------GGTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred ------CcEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEehh
Confidence 7899999996 999999999854 478888755 467887643
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.64 E-value=2.2e-14 Score=118.43 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=115.4
Q ss_pred CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEe-cCCCEEEEEeCC
Q 047259 1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALS-KDENFVVVCESW 78 (225)
Q Consensus 1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~-~dg~~Lyv~~~~ 78 (225)
+|++++.++ +|+||++|.. .+.|+++++++++.+...... |+|++++ +++ .|||++..
T Consensus 1 l~Egp~~d~~~g~l~~~D~~-----------------~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~ 60 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIP-----------------GGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG 60 (246)
T ss_dssp CEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT
T ss_pred CCcceEEECCCCEEEEEEcC-----------------CCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC
Confidence 578999998 8999999987 689999999877766544333 9999999 664 59999975
Q ss_pred CCEEEEEEecCCCCCceeEEecc-----CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259 79 KFRCRRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI 153 (225)
Q Consensus 79 ~~~I~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~ 153 (225)
. +..+++++ +..+.+... ....|+++++|++|+||+++......
T Consensus 61 ~--~~~~d~~~---g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~-------------------------- 109 (246)
T PF08450_consen 61 G--IAVVDPDT---GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA-------------------------- 109 (246)
T ss_dssp C--EEEEETTT---TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT--------------------------
T ss_pred c--eEEEecCC---CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcc--------------------------
Confidence 4 44457654 345555542 12368999999999999999874310
Q ss_pred cCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCccc
Q 047259 154 PLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEA 217 (225)
Q Consensus 154 ~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~ 217 (225)
.....+.|++++++|++...... +..+.+++.. ++.||+++...++|.+++++....
T Consensus 110 --~~~~~g~v~~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 110 --SGIDPGSVYRIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp --TCGGSEEEEEEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred --ccccccceEEECCCCeEEEEecC-----cccccceEECCcchheeecccccceeEEEecccccc
Confidence 11002899999999887555442 3446666653 568999999999999999986554
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.62 E-value=6.1e-14 Score=136.47 Aligned_cols=161 Identities=22% Similarity=0.226 Sum_probs=118.9
Q ss_pred CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe---------------cCccccceeE
Q 047259 1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH---------------EGFYFANGVA 64 (225)
Q Consensus 1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---------------~~~~~pnGi~ 64 (225)
.|.+|++++ +|.+|+++.+ +++|+++|..++.+.... ..+..|+||+
T Consensus 684 ~P~gVa~dp~~g~LyVad~~-----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIa 746 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAG-----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGIS 746 (1057)
T ss_pred CCeEEEEecCCCeEEEEECC-----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEE
Confidence 378999999 6799999987 567788877656554332 1346799999
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec----------------c-----CCCCCCceEECCCCCEEEEeec
Q 047259 65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE----------------H-----LPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----------------~-----~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
++||++.|||+++.+++|++|+++++. ...+.. . ....|.++++|++|++||++..
T Consensus 747 vspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~ 823 (1057)
T PLN02919 747 LSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY 823 (1057)
T ss_pred EeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence 999999999999999999999987421 111110 0 0125999999999999999988
Q ss_pred CCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC------CC----CcccceeEEEE-
Q 047259 124 MNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP------NA----TYISFVTSAVE- 192 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p------~g----~~~~~~t~~~~- 192 (225)
.++|.++|+++..+..+... +| ..+..+.+++.
T Consensus 824 ------------------------------------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 824 ------------------------------------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ------------------------------------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 66899999876554444321 11 12456777765
Q ss_pred eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259 193 FEDNLYMASIQSKFVGKLPLNTPEA 217 (225)
Q Consensus 193 ~~~~Lyv~~~~~~~i~~~~~~~~~~ 217 (225)
.+|+|||++..+++|.++++.+...
T Consensus 868 ~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEECCCCEEEEEECCCCcc
Confidence 4789999999999999999987543
No 9
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.46 E-value=8.7e-12 Score=121.60 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=111.8
Q ss_pred CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-Eec--------------CccccceeE
Q 047259 1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHE--------------GFYFANGVA 64 (225)
Q Consensus 1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~--------------~~~~pnGi~ 64 (225)
||.++++++ +|+|||+|.+ +++|.++|.+ +.+.. +.. .+..|.||+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~-----------------n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIa 630 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSN-----------------HNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLA 630 (1057)
T ss_pred CCceEEEECCCCeEEEEECC-----------------CCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEE
Confidence 788999997 5789999997 6789999986 44433 221 135799999
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc----------------CCCCCCceEECC-CCCEEEEeecCCch
Q 047259 65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH----------------LPGGPDNINLAP-DGSFWVALIKMNQT 127 (225)
Q Consensus 65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~----------------~~g~Pd~i~~d~-~G~l~v~~~~~~~~ 127 (225)
++++++.|||+|+.+++|.+++..+. ..+++... .-..|.++++|+ +|.+||++.+
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---- 703 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---- 703 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----
Confidence 99998889999999999999998642 23333210 012588999999 6889999987
Q ss_pred hhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC------CC-----CcccceeEEEEe--C
Q 047259 128 GVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP------NA-----TYISFVTSAVEF--E 194 (225)
Q Consensus 128 ~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p------~g-----~~~~~~t~~~~~--~ 194 (225)
..+|.++|+.+..+..+... ++ ..+..+++++.. +
T Consensus 704 --------------------------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG 751 (1057)
T PLN02919 704 --------------------------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL 751 (1057)
T ss_pred --------------------------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCC
Confidence 45677777653333333210 01 113455666543 4
Q ss_pred CEEEEeeCCCCeEEEEeCCCc
Q 047259 195 DNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 195 ~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
++|||++..+++|.++++++.
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCC
Confidence 679999999999999998753
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.42 E-value=6.8e-12 Score=102.69 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=116.7
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
.|...+|++|++|||.+... .| ++|+.++.+++.. .....|+||+..|||. +|+++...+
T Consensus 150 let~vfD~~G~lWFt~q~G~---------------yG---rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagn 210 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIGA---------------YG---RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGN 210 (353)
T ss_pred ccceeeCCCccEEEeecccc---------------ce---ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEecccc
Confidence 36778999999999987522 23 6677666666553 3457899999999997 999999999
Q ss_pred EEEEEEecCCCCCceeEEec--cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259 81 RCRRYWLKGPRQGRLESFIE--HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND 158 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~ 158 (225)
.|.|+++.. +..+++.. .+...-..+-.|+.|++|++.++
T Consensus 211 aiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg----------------------------------- 252 (353)
T COG4257 211 AIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG----------------------------------- 252 (353)
T ss_pred ceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccC-----------------------------------
Confidence 999999864 24444432 11223578899999999999888
Q ss_pred cceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259 159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
.+.+.+|||.-+.=..+..|..+ ...-+.-++..+++|++++..+.|.+|+..+.
T Consensus 253 -~g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred -CceeeEeCcccccceeeeCCCCC-CCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 77999999986655678887654 33344445667999999999999999976554
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.39 E-value=4.2e-11 Score=104.73 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=114.9
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCc-EEEEEeCCC--C---eEEEEecCccccceeEEecCCCEEEE
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHG-QLLKYDPEL--E---ETTVLHEGFYFANGVALSKDENFVVV 74 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~--~---~~~~~~~~~~~pnGi~~~~dg~~Lyv 74 (225)
.|-+|+++++|+||++++.. |... .......+ +|++++..+ | +++++++++..|+||++.++| |||
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~-y~~~-----~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV 86 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGIT-YSRP-----AGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV 86 (367)
T ss_pred CCceeeECCCCCEEEEeCCc-CCCC-----CCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE
Confidence 37789999999999999852 2111 11112234 898887532 3 456778999999999999987 999
Q ss_pred EeCCCCEEEEEE-ecCC--CCCceeEEeccCC-------CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259 75 CESWKFRCRRYW-LKGP--RQGRLESFIEHLP-------GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQA 144 (225)
Q Consensus 75 ~~~~~~~I~~~~-~~~~--~~~~~~~~~~~~~-------g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~ 144 (225)
++. .+|+++. .++. ..+..++++...+ ..+.++++++||+||++.......+.. .+.
T Consensus 87 ~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~----~~~------- 153 (367)
T TIGR02604 87 ATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT----RPG------- 153 (367)
T ss_pred eCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec----cCC-------
Confidence 875 4799985 3332 2225566665332 238899999999999998853211100 000
Q ss_pred hhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEE
Q 047259 145 YPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKL 210 (225)
Q Consensus 145 ~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~ 210 (225)
.+... . ... .+.|+|++|+|...+.+.. | +..+.+++. ..|.||+++.......++
T Consensus 154 ~~~~~-~---~~~--~g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d~~G~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 154 TSDES-R---QGL--GGGLFRYNPDGGKLRVVAH--G--FQNPYGHSVDSWGDVFFCDNDDPPLCRV 210 (367)
T ss_pred CccCc-c---ccc--CceEEEEecCCCeEEEEec--C--cCCCccceECCCCCEEEEccCCCceeEE
Confidence 00000 0 011 5799999999987788774 3 344555555 478999998765554443
No 12
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=99.33 E-value=1.6e-11 Score=84.74 Aligned_cols=82 Identities=30% Similarity=0.557 Sum_probs=68.7
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhh--hcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYK--DLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~--~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
|||++....++|+|+++. ++ ..|+. +.+.+.+.|.|+.||++ +++.+++++.+||||+++||++.|||++...+
T Consensus 1 NDIvavG~~sFy~TNDhy-f~-~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHY-FT-DPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCEEEECcCcEEEECchh-hC-cHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 789988888999999982 32 23332 44456789999999974 78889999999999999999999999999999
Q ss_pred EEEEEEec
Q 047259 81 RCRRYWLK 88 (225)
Q Consensus 81 ~I~~~~~~ 88 (225)
.|..|..+
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99999864
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=1.8e-10 Score=99.85 Aligned_cols=163 Identities=20% Similarity=0.285 Sum_probs=108.4
Q ss_pred CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC--CCCeEEE----EecCccccceeEEecCCCEEE
Q 047259 1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP--ELEETTV----LHEGFYFANGVALSKDENFVV 73 (225)
Q Consensus 1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~~~~~~~----~~~~~~~pnGi~~~~dg~~Ly 73 (225)
+|+.+.++|||+ +|++|.+ ..+|+.|+. .+++++. .......|..|+|+||++++|
T Consensus 145 h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE
T ss_pred cceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE
Confidence 467899999986 8888886 345655554 3333544 245678899999999999999
Q ss_pred EEeCCCCEEEEEEecCCCCCceeEEe--ccCC----C--CCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259 74 VCESWKFRCRRYWLKGPRQGRLESFI--EHLP----G--GPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQA 144 (225)
Q Consensus 74 v~~~~~~~I~~~~~~~~~~~~~~~~~--~~~~----g--~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~ 144 (225)
|+....+.|..|+++.. .+..+... ...+ + .|.+|++++||+ |||+..+..
T Consensus 208 v~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~------------------- 267 (345)
T PF10282_consen 208 VVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN------------------- 267 (345)
T ss_dssp EEETTTTEEEEEEEETT-TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-------------------
T ss_pred EecCCCCcEEEEeeccc-CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-------------------
Confidence 99999999999998721 12222211 1121 1 477899999997 788876621
Q ss_pred hhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCC-CCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCcccc
Q 047259 145 YPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPN-ATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTPEAE 218 (225)
Q Consensus 145 ~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~-g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~~~ 218 (225)
.-.++.+|++ |++...-..+. |+ .|..+.. ++++|||++..++.|.+|+++.+.-.
T Consensus 268 ---------------sI~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 268 ---------------SISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp ---------------EEEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred ---------------EEEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 4567778654 66543322222 43 2444444 68999999999999999998755433
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.20 E-value=2.4e-09 Score=91.89 Aligned_cols=160 Identities=12% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEE------EecCccccceeEEecCCCEEE
Q 047259 2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTV------LHEGFYFANGVALSKDENFVV 73 (225)
Q Consensus 2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~------~~~~~~~pnGi~~~~dg~~Ly 73 (225)
|+.++++++|+ +|+++.. .+.|..||.++ +.+.. .......|.+++++|||++||
T Consensus 128 ~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred ccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 56778888874 6677665 45666666543 43321 123356799999999999999
Q ss_pred EEeCCCCEEEEEEecCCCCCceeEEec--cCC------CCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259 74 VCESWKFRCRRYWLKGPRQGRLESFIE--HLP------GGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQA 144 (225)
Q Consensus 74 v~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~------g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~ 144 (225)
+++...+.|..|+++.. .+..+.... ..| ..|.+|+++++|+ +|+++....
T Consensus 191 v~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~------------------- 250 (330)
T PRK11028 191 CVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS------------------- 250 (330)
T ss_pred EEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC-------------------
Confidence 99999999999998731 112222211 111 1344689999997 788754311
Q ss_pred hhhhhhhhccCCCCcceEEEEECCCCcEEEEEE-CCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259 145 YPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 145 ~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~-~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
.-.|+.+++++.....+. .+.+. .+..+. +++++||+++..++.|.+++++...
T Consensus 251 ---------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 251 ---------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred ---------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 456677777764333332 22232 122233 4578999999989999999887543
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.3e-09 Score=90.31 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=109.3
Q ss_pred CcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
++...+++. .||++|-. .++|+++++.+++.+........++++.++.++. |.+++.+
T Consensus 28 EgP~w~~~~~~L~w~DI~-----------------~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~~~g--- 86 (307)
T COG3386 28 EGPVWDPDRGALLWVDIL-----------------GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEHG--- 86 (307)
T ss_pred cCccCcCCCCEEEEEeCC-----------------CCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEEccc---
Confidence 344445544 37777665 6799999998788888877778899999998875 8888764
Q ss_pred EEEEEecCCCCCce-eEEeccC----CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 82 CRRYWLKGPRQGRL-ESFIEHL----PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 82 I~~~~~~~~~~~~~-~~~~~~~----~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
+.+++.+. +.. +.+.+.. ...|+...++++|++|+++.... . . ..+ ...
T Consensus 87 ~~~~~~~~---~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~-~-~----~~~-----------------~~~ 140 (307)
T COG3386 87 VRLLDPDT---GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYF-D-L----GKS-----------------EER 140 (307)
T ss_pred cEEEeccC---CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCcc-c-c----Ccc-----------------ccC
Confidence 44455442 122 4444322 24689999999999999998820 0 0 000 012
Q ss_pred CCcceEEEEECCCCcEEEEEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCC
Q 047259 157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
+ .+.|+++||+|++++.+... +..+++++ +++..||++++..++|.+++++.
T Consensus 141 ~--~G~lyr~~p~g~~~~l~~~~----~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 141 P--TGSLYRVDPDGGVVRLLDDD----LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred C--cceEEEEcCCCCEEEeecCc----EEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 2 77999999998887666541 22233344 45679999999999999999984
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=2.2e-08 Score=86.91 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=102.9
Q ss_pred CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEE--EEEeCCCCeEEEEe--------------cCccccceeEE
Q 047259 3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQL--LKYDPELEETTVLH--------------EGFYFANGVAL 65 (225)
Q Consensus 3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~~~--------------~~~~~pnGi~~ 65 (225)
-.++++++|+ ||+++-+ .|.| +.++.+ |++.... +....|..+.+
T Consensus 90 ~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred EEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEE
Confidence 4578888886 6666543 3444 555543 5554431 23467889999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCC--CCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHH
Q 047259 66 SKDENFVVVCESWKFRCRRYWLKGPR--QGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLL 142 (225)
Q Consensus 66 ~~dg~~Lyv~~~~~~~I~~~~~~~~~--~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~ 142 (225)
+|||++|||++.+.++|+.|+++... +.....+.-.....|..|+++++|+ +||+.-...
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~----------------- 214 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN----------------- 214 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT-----------------
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC-----------------
Confidence 99999999999999999999997532 2221112111234699999999986 677764411
Q ss_pred HhhhhhhhhhccCCCCcceEEEEEC-CCCcE--EEEEEC-CCCC-cccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259 143 QAYPELINLLIPLGNDAGARIVKVD-THGKI--IMDFND-PNAT-YISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 143 ~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~--~~~~~~-p~g~-~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
.-.++.++ .+|++ +..+.. |.+- ....++.+.. ++.+||+++-..+.|.+|+++..
T Consensus 215 -----------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 215 -----------------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp -----------------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred -----------------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 44566777 45644 333332 2221 0124555554 47899999999999999999765
Q ss_pred cc
Q 047259 216 EA 217 (225)
Q Consensus 216 ~~ 217 (225)
..
T Consensus 278 ~g 279 (345)
T PF10282_consen 278 TG 279 (345)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.04 E-value=1.2e-08 Score=89.33 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=71.3
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEE-eCC-----CCeEEEEecC--------ccccceeEEe
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKY-DPE-----LEETTVLHEG--------FYFANGVALS 66 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~-----~~~~~~~~~~--------~~~pnGi~~~ 66 (225)
+|++|++.++| ||+++.. +|+++ |.+ +++.+.++++ ...+++++++
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~-------------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g 132 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPP-------------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG 132 (367)
T ss_pred CccceeEecCC-EEEeCCC-------------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC
Confidence 47889998888 9998654 56666 221 1144444433 2458999999
Q ss_pred cCCCEEEEEeCC-------------------CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecC
Q 047259 67 KDENFVVVCESW-------------------KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKM 124 (225)
Q Consensus 67 ~dg~~Lyv~~~~-------------------~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~ 124 (225)
|||+ ||++... .++|+||++++. ..++++.. ...|.|+++|++|++|++++..
T Consensus 133 pDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 133 PDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 9996 9998762 157999999863 45666643 3469999999999999999863
No 18
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.04 E-value=2.2e-08 Score=89.16 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=103.2
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-------ec-CccccceeEEecCC---
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-------HE-GFYFANGVALSKDE--- 69 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-------~~-~~~~pnGi~~~~dg--- 69 (225)
+|-+|++.+||++|||+.. .|+|++++..++..+.+ .. +....-||+++||=
T Consensus 31 ~Pw~maflPDG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~ 93 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQE 93 (454)
T ss_pred CceEEEEcCCCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcccc
Confidence 4788999999999999764 58999998754433222 11 45678999999872
Q ss_pred ---CEEEEEeCC---------CCEEEEEEecC--CCCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhhhh
Q 047259 70 ---NFVVVCESW---------KFRCRRYWLKG--PRQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGVRA 131 (225)
Q Consensus 70 ---~~Lyv~~~~---------~~~I~~~~~~~--~~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~~~ 131 (225)
++|||+.+. ..+|.|+.++. ..+...+++....|. .-..|++++||.||++.........
T Consensus 94 ~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~-- 171 (454)
T TIGR03606 94 KGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQG-- 171 (454)
T ss_pred CCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCc--
Confidence 479998632 46899998863 223333344433332 2357999999999999887421000
Q ss_pred hhcChhHHHH-HHhhhhhhhhhc-cCCCCcceEEEEECCCCcE-----------EEEEECCCCCcccceeEEEE-eCCEE
Q 047259 132 IQSCPDKWKL-LQAYPELINLLI-PLGNDAGARIVKVDTHGKI-----------IMDFNDPNATYISFVTSAVE-FEDNL 197 (225)
Q Consensus 132 ~~~~~~~r~~-~~~~p~~~~~~~-~~~~~~~~~V~~~d~~G~~-----------~~~~~~p~g~~~~~~t~~~~-~~~~L 197 (225)
+...+.. ...+|.. ..+. .+.....++|+|+++||++ -++++. | +.++-.++. .+++|
T Consensus 172 ---~n~~~~~~aQ~~~~~-~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G--~RNp~Gla~dp~G~L 243 (454)
T TIGR03606 172 ---ANFFLPNQAQHTPTQ-QELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--G--HRNPQGLAFTPDGTL 243 (454)
T ss_pred ---ccccCcchhcccccc-ccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--e--ccccceeEECCCCCE
Confidence 0000000 0000100 0000 0111127899999999973 123332 1 223334443 37899
Q ss_pred EEeeCCC
Q 047259 198 YMASIQS 204 (225)
Q Consensus 198 yv~~~~~ 204 (225)
|+++.+.
T Consensus 244 w~~e~Gp 250 (454)
T TIGR03606 244 YASEQGP 250 (454)
T ss_pred EEEecCC
Confidence 9998776
No 19
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.04 E-value=5.1e-08 Score=83.71 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=100.0
Q ss_pred CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEE--EEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEe
Q 047259 2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQL--LKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCE 76 (225)
Q Consensus 2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~ 76 (225)
|+.++++++|+ ||++... .+.| |.++ ++++++... .....|.+|+++||+++||++.
T Consensus 37 ~~~l~~spd~~~lyv~~~~-----------------~~~i~~~~~~-~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRP-----------------EFRVLSYRIA-DDGALTFAAESPLPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred CccEEECCCCCEEEEEECC-----------------CCcEEEEEEC-CCCceEEeeeecCCCCceEEEECCCCCEEEEEE
Confidence 56788888886 6776543 3445 5554 245554432 2234789999999999999999
Q ss_pred CCCCEEEEEEecCC-CCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259 77 SWKFRCRRYWLKGP-RQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP 154 (225)
Q Consensus 77 ~~~~~I~~~~~~~~-~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~ 154 (225)
...++|..|+++.. .......... ....|-+++++++|+ +||++....
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~----------------------------- 148 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKED----------------------------- 148 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCC-----------------------------
Confidence 98999999998631 1211111111 112478899999986 677776511
Q ss_pred CCCCcceEEEEECCCCcEEE----EEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCC
Q 047259 155 LGNDAGARIVKVDTHGKIIM----DFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 155 ~~~~~~~~V~~~d~~G~~~~----~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
.-.|+.++.+|++.. ....+.|. .+..++ +++.+||+++..++.|.+++++.
T Consensus 149 -----~v~v~d~~~~g~l~~~~~~~~~~~~g~---~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 149 -----RIRLFTLSDDGHLVAQEPAEVTTVEGA---GPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred -----EEEEEEECCCCcccccCCCceecCCCC---CCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 345555665565432 22333343 233333 45678999999999999999874
No 20
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=4e-08 Score=86.43 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=110.5
Q ss_pred CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259 1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
.|.+++++++| .+|+++... ..+.+..+|..++++.........|.|++++|+|+.+|+++...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred CCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCC
Confidence 47899999998 799999961 26799999998777766655555789999999999999999999
Q ss_pred CEEEEEEecCCCCCcee--EEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 80 FRCRRYWLKGPRQGRLE--SFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 80 ~~I~~~~~~~~~~~~~~--~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
++|..++.++....... ... .....|.+++++++|. +||+.....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~------------------------------- 229 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG------------------------------- 229 (381)
T ss_pred CeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCC-------------------------------
Confidence 99999997653111100 001 1334799999999997 899887721
Q ss_pred CCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259 157 NDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 157 ~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
...|.++|... ++.. ...+.++..+......+.+..+|+.....+.+.+++...
T Consensus 230 ---~~~v~~id~~~~~v~~-~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 230 ---SNNVLKIDTATGNVTA-TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred ---CceEEEEeCCCceEEE-eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 25788888764 4433 222222211111122345666777766666666665544
No 21
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=1e-07 Score=82.45 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=89.7
Q ss_pred cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCEE
Q 047259 12 SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------WKFRC 82 (225)
Q Consensus 12 ~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------~~~~I 82 (225)
++|++|.... +. .|+|+.+|.+++++...++....|+|+ ++|||+.||||++ ..+.|
T Consensus 14 ~v~V~d~~~~------------~~-~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 14 RVYVLDPGHF------------AA-TTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred EEEEECCccc------------cc-CceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEE
Confidence 6999988621 11 389999999888887777788899997 9999999999999 89999
Q ss_pred EEEEecCCCCCceeEEecc-----CCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 83 RRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
..||..+.... .++-... ....|..+++++||+ |||++..+
T Consensus 80 ~v~D~~t~~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-------------------------------- 126 (352)
T TIGR02658 80 EVIDPQTHLPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-------------------------------- 126 (352)
T ss_pred EEEECccCcEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCC--------------------------------
Confidence 99998752111 1111110 112456999999997 78887662
Q ss_pred CCcceEEEEECCC-CcEEEEEECCCCC
Q 047259 157 NDAGARIVKVDTH-GKIIMDFNDPNAT 182 (225)
Q Consensus 157 ~~~~~~V~~~d~~-G~~~~~~~~p~g~ 182 (225)
...|.++|.. ++++..+..|++.
T Consensus 127 ---~~~V~VvD~~~~kvv~ei~vp~~~ 150 (352)
T TIGR02658 127 ---SPAVGVVDLEGKAFVRMMDVPDCY 150 (352)
T ss_pred ---CCEEEEEECCCCcEEEEEeCCCCc
Confidence 4578888875 7888888877765
No 22
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.91 E-value=9.5e-08 Score=80.87 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=92.5
Q ss_pred CCCcEEEcCC------CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc-----------------
Q 047259 1 FTNDVIEASD------GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF----------------- 57 (225)
Q Consensus 1 ~pndv~~~~d------G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~----------------- 57 (225)
|.||++++.. +-+|+||++ .+.|..||..+++...+..+.
T Consensus 62 ~lndl~VD~~~~~~~~~~aYItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 62 FLNDLVVDVRDGNCDDGFAYITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF 124 (287)
T ss_dssp GEEEEEEECTTTTS-SEEEEEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE
T ss_pred ccceEEEEccCCCCcceEEEEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceE
Confidence 4688888882 469999998 235555565544433222111
Q ss_pred ---cccceeEEec---CCCEEEEEeCCCCEEEEEEec---CCCCCc-------eeEEeccCCCCCCceEECCCCCEEEEe
Q 047259 58 ---YFANGVALSK---DENFVVVCESWKFRCRRYWLK---GPRQGR-------LESFIEHLPGGPDNINLAPDGSFWVAL 121 (225)
Q Consensus 58 ---~~pnGi~~~~---dg~~Lyv~~~~~~~I~~~~~~---~~~~~~-------~~~~~~~~~g~Pd~i~~d~~G~l~v~~ 121 (225)
....||+++| ||++||+......+++++..+ ...... .+.+. ..++..+|+++|++|+||.++
T Consensus 125 ~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~ 203 (287)
T PF03022_consen 125 QWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTD 203 (287)
T ss_dssp EETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEE
T ss_pred ecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEec
Confidence 1256889877 889999999988999999864 111111 11221 122356899999999999999
Q ss_pred ecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-----cEEEEEECCCCCcccceeEEEEeC--
Q 047259 122 IKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-----KIIMDFNDPNATYISFVTSAVEFE-- 194 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-----~~~~~~~~p~g~~~~~~t~~~~~~-- 194 (225)
.. ...|.+.++++ +....+.+++. +..+.++....
T Consensus 204 ~~------------------------------------~~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~ 245 (287)
T PF03022_consen 204 VE------------------------------------QNAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEG 245 (287)
T ss_dssp CC------------------------------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--
T ss_pred CC------------------------------------CCeEEEEeCCCCcCccchheeEEcCce--eeccceeeecccc
Confidence 88 67899999998 45455666543 45677776544
Q ss_pred -CEEEEeeCC
Q 047259 195 -DNLYMASIQ 203 (225)
Q Consensus 195 -~~Lyv~~~~ 203 (225)
|.||+.+..
T Consensus 246 ~g~L~v~snr 255 (287)
T PF03022_consen 246 DGYLWVLSNR 255 (287)
T ss_dssp TS-EEEEE-S
T ss_pred CceEEEEECc
Confidence 999998743
No 23
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.6e-07 Score=82.59 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=109.9
Q ss_pred CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--
Q 047259 1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES-- 77 (225)
Q Consensus 1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~-- 77 (225)
+|+++++.++|+ +|+++.. ...|..+|..+.++.........|.+++++++++.+||++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~-----------------~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~ 137 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGD-----------------SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN 137 (381)
T ss_pred cccceeeCCCCCeEEEecCC-----------------CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc
Confidence 478899999886 9999875 56888888654444443334459999999999999999999
Q ss_pred CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
+++.|..++..+...... ++. ...|.+++++++|. +|+++..
T Consensus 138 ~~~~vsvid~~t~~~~~~-~~v---G~~P~~~a~~p~g~~vyv~~~~--------------------------------- 180 (381)
T COG3391 138 GNNTVSVIDAATNKVTAT-IPV---GNTPTGVAVDPDGNKVYVTNSD--------------------------------- 180 (381)
T ss_pred CCceEEEEeCCCCeEEEE-Eec---CCCcceEEECCCCCeEEEEecC---------------------------------
Confidence 579999999875322222 222 22589999999998 9999955
Q ss_pred CCcceEEEEECCCCcEEEEEECCCC--CcccceeEEE--EeCCEEEEeeCCC--CeEEEEeCCCc
Q 047259 157 NDAGARIVKVDTHGKIIMDFNDPNA--TYISFVTSAV--EFEDNLYMASIQS--KFVGKLPLNTP 215 (225)
Q Consensus 157 ~~~~~~V~~~d~~G~~~~~~~~p~g--~~~~~~t~~~--~~~~~Lyv~~~~~--~~i~~~~~~~~ 215 (225)
.+.|..+|.++..+.. ..+.. .....+-.+. +.+.++|+....+ +.+.+++....
T Consensus 181 ---~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 181 ---DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred ---CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 5678888887765443 22110 0122233333 3567799999888 58888877664
No 24
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.88 E-value=8.1e-08 Score=82.93 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=100.1
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE-EEE-------ecCccccceeEEecC---CC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET-TVL-------HEGFYFANGVALSKD---EN 70 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~-------~~~~~~pnGi~~~~d---g~ 70 (225)
|-.|++.|||++|+++. .|+|++++.+ +.. ..+ ..+....-||+++|+ .+
T Consensus 4 P~~~a~~pdG~l~v~e~------------------~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~ 64 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAER------------------SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNG 64 (331)
T ss_dssp EEEEEEETTSCEEEEET------------------TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-
T ss_pred ceEEEEeCCCcEEEEeC------------------CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCC
Confidence 56899999999999966 4899999844 554 222 134467789999994 45
Q ss_pred EEEEEeCCC--------CEEEEEEecCC--CCCceeEEeccCCC------CCCceEECCCCCEEEEeecCCchhhhhhhc
Q 047259 71 FVVVCESWK--------FRCRRYWLKGP--RQGRLESFIEHLPG------GPDNINLAPDGSFWVALIKMNQTGVRAIQS 134 (225)
Q Consensus 71 ~Lyv~~~~~--------~~I~~~~~~~~--~~~~~~~~~~~~~g------~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~ 134 (225)
+|||+.+.. .+|.|+..+.. .....++++...+. ....|++++||.|||+.......- ...
T Consensus 65 ~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~---~~~ 141 (331)
T PF07995_consen 65 YLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDD---NAQ 141 (331)
T ss_dssp EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGG---GGC
T ss_pred EEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcc---ccc
Confidence 799998854 68999998743 33444444433222 235699999999999998743200 000
Q ss_pred ChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcE-------------EEEEECCCCCcccceeEEEEe-C-CEEEE
Q 047259 135 CPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKI-------------IMDFNDPNATYISFVTSAVEF-E-DNLYM 199 (225)
Q Consensus 135 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~-------------~~~~~~p~g~~~~~~t~~~~~-~-~~Lyv 199 (225)
......++|+|++++|++ .+.++. | +..+-.++.+ . |.||+
T Consensus 142 --------------------~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 142 --------------------DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp --------------------STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEE
T ss_pred --------------------ccccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCcEEE
Confidence 111127899999999973 122221 2 4455566654 4 89999
Q ss_pred eeCCCCe
Q 047259 200 ASIQSKF 206 (225)
Q Consensus 200 ~~~~~~~ 206 (225)
++.+.+.
T Consensus 198 ~d~G~~~ 204 (331)
T PF07995_consen 198 ADNGPDG 204 (331)
T ss_dssp EEE-SSS
T ss_pred EccCCCC
Confidence 9977643
No 25
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=6.7e-07 Score=75.76 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=113.9
Q ss_pred CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEe
Q 047259 2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL----HEGFYFANGVALSKDENFVVVCE 76 (225)
Q Consensus 2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGi~~~~dg~~Lyv~~ 76 (225)
++-..++|+|+ ++++|-+ .-+|+.|+.+.|+++.. .....+|.-|+|.|+++..|+..
T Consensus 147 ~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~ 209 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN 209 (346)
T ss_pred cceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe
Confidence 44566788886 4444444 55777777666776553 35668899999999999999999
Q ss_pred CCCCEEEEEEecCCCCCceeEEec--cCC----C--CCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhh
Q 047259 77 SWKFRCRRYWLKGPRQGRLESFIE--HLP----G--GPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPE 147 (225)
Q Consensus 77 ~~~~~I~~~~~~~~~~~~~~~~~~--~~~----g--~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~ 147 (225)
.-++.|..+..++. .+..+.+.. .+| + .-..|.++++|+ ||+++-+ .
T Consensus 210 EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg-~---------------------- 265 (346)
T COG2706 210 ELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG-H---------------------- 265 (346)
T ss_pred ccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC-C----------------------
Confidence 99999999888753 333333221 122 1 234689999998 5555544 1
Q ss_pred hhhhhccCCCCcceEEEEECCCCcEEEEEE-CCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccccCC
Q 047259 148 LINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAP 221 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~-~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~ 221 (225)
+ .-.+.++|++|..+..+. -+.+...+.--.+...++.|+++.-.++.|.+|.++.+.-++..
T Consensus 266 ---------d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 266 ---------D--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ---------C--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 1 457899999865444432 23332234333445678999999999999999999988776654
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.81 E-value=2e-06 Score=71.46 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=70.0
Q ss_pred CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
++.++++++|+ +|++... .+.|+.+|..+++..........+..++++||++.||++....+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD-----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CCceEECCCCCEEEEEECC-----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCC
Confidence 35567777775 5555443 56888899877766544444455788999999999999988788
Q ss_pred EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.|..+++.+. .....+ + ....|.+++++++|.++++...
T Consensus 96 ~l~~~d~~~~--~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 96 LVTVIDIETR--KVLAEI-P-VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred eEEEEECCCC--eEEeEe-e-CCCCcceEEECCCCCEEEEEec
Confidence 9999998642 111111 1 2335789999999998876654
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.66 E-value=8.1e-06 Score=67.80 Aligned_cols=137 Identities=15% Similarity=-0.032 Sum_probs=84.3
Q ss_pred EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-c---CCCCCCceEECCC
Q 047259 39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-H---LPGGPDNINLAPD 114 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~---~~g~Pd~i~~d~~ 114 (225)
.++.+|..+++..........|..+++++|++.||++....+.|..+++++...-....+.. . ....|.+++++++
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 35566776555443332335688999999999898887777899999987531111001110 0 1124678999999
Q ss_pred CCE-EEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE-
Q 047259 115 GSF-WVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV- 191 (225)
Q Consensus 115 G~l-~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~- 191 (225)
|+. |++... ...+.++|.+ ++++..+.. +. .+..+.
T Consensus 218 g~~~~~~~~~------------------------------------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~ 256 (300)
T TIGR03866 218 GKTAFVALGP------------------------------------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAF 256 (300)
T ss_pred CCEEEEEcCC------------------------------------CCeEEEEECCCCcEEEEEEe--CC---CcceEEE
Confidence 985 665544 2346666664 566554432 21 122333
Q ss_pred -EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259 192 -EFEDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 192 -~~~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
+.+..||+++-.++.|.++++.+..
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3567788887778889999888754
No 28
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=6e-06 Score=70.07 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=103.3
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE---ecCc----------cccceeEEecC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL---HEGF----------YFANGVALSKD 68 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~---~~~~----------~~pnGi~~~~d 68 (225)
|.-|+++++|++.|+-.+. .+.-+|+.+..+ |.+... .... ..+.-..++||
T Consensus 91 p~yvsvd~~g~~vf~AnY~--------------~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYH--------------SGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred CeEEEECCCCCEEEEEEcc--------------CceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 3567888888877775541 112344555443 543322 1111 22677889999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC-CCCCceEECCCCCE-EEEeecCCchhhhhhhcChhHHHHHHhhh
Q 047259 69 ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP-GGPDNINLAPDGSF-WVALIKMNQTGVRAIQSCPDKWKLLQAYP 146 (225)
Q Consensus 69 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-g~Pd~i~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~r~~~~~~p 146 (225)
+++|++++-+..+|..|+.+.+.+....... -.+ ..|+.|++-++|++ |+..--.
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G~GPRHi~FHpn~k~aY~v~EL~---------------------- 212 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPGAGPRHIVFHPNGKYAYLVNELN---------------------- 212 (346)
T ss_pred CCEEEEeecCCceEEEEEcccCccccccccc-cCCCCCcceEEEcCCCcEEEEEeccC----------------------
Confidence 9999999999999999999753333222211 123 47999999999985 5554221
Q ss_pred hhhhhhccCCCCcceEEEEECCC-CcE--EEEE-ECCCCCccc---ceeEEE--EeCCEEEEeeCCCCeEEEEeCCCccc
Q 047259 147 ELINLLIPLGNDAGARIVKVDTH-GKI--IMDF-NDPNATYIS---FVTSAV--EFEDNLYMASIQSKFVGKLPLNTPEA 217 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~V~~~d~~-G~~--~~~~-~~p~g~~~~---~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~~ 217 (225)
+.-.|+.+++. |++ ++.+ ..|++ |. +.+.+. .++..||+++-+.+.|+.|.++...-
T Consensus 213 ------------stV~v~~y~~~~g~~~~lQ~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 213 ------------STVDVLEYNPAVGKFEELQTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred ------------CEEEEEEEcCCCceEEEeeeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 15577888886 543 2222 23433 22 223332 35789999999999999998887644
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=2.9e-06 Score=74.36 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=92.4
Q ss_pred cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259 4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
.+.+++||+ +|+++. .|.|..+|..++++.........|.|+++|+||+++|++....+.+
T Consensus 41 ~~~~s~Dgr~~yv~~r------------------dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANR------------------DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEE-TT-SSEEEEEET------------------TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred EEEecCCCCEEEEEcC------------------CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCce
Confidence 345667775 666632 5789999998887666666677899999999999999999999999
Q ss_pred EEEEecCCCCCceeEEec-cCC-----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 83 RRYWLKGPRQGRLESFIE-HLP-----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~-----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
..+|.++ +.....+.. ..+ ..+.+|...+....|+.....
T Consensus 103 ~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-------------------------------- 148 (369)
T PF02239_consen 103 SVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-------------------------------- 148 (369)
T ss_dssp EEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--------------------------------
T ss_pred eEecccc--ccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--------------------------------
Confidence 9998754 222222111 111 112355556666666665441
Q ss_pred CCcceEEEEECCC-CcEE--EEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259 157 NDAGARIVKVDTH-GKII--MDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 157 ~~~~~~V~~~d~~-G~~~--~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
.+.|+.+|.+ .+.+ ..+. .++ + +-+... .+.+++++...++.|.+++..+.
T Consensus 149 ---~~~I~vVdy~d~~~~~~~~i~--~g~-~--~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 149 ---TGEIWVVDYSDPKNLKVTTIK--VGR-F--PHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp ---TTEEEEEETTTSSCEEEEEEE----T-T--EEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ---CCeEEEEEeccccccceeeec--ccc-c--ccccccCcccceeeecccccceeEEEeeccc
Confidence 4678888743 3322 2333 233 2 223332 35678888999999999986653
No 30
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.55 E-value=2.7e-05 Score=64.52 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=108.1
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCC
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESW 78 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~ 78 (225)
|.+++.+..+|.||-+... +| ..+|.++|..+|++... .+.-.+..||++-.| .||.-...
T Consensus 46 FTQGL~~~~~g~LyESTG~--yG-------------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk 108 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGL--YG-------------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWK 108 (264)
T ss_dssp EEEEEEEEETTEEEEEECS--TT-------------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESS
T ss_pred cCccEEecCCCEEEEeCCC--CC-------------cEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEec
Confidence 5677888778888888665 33 56899999998886543 455678999999965 59999999
Q ss_pred CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259 79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND 158 (225)
Q Consensus 79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~ 158 (225)
++..+.|+.++ +.....|. .++..=||+.|.+ .||+++..
T Consensus 109 ~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg~-~Li~SDGS----------------------------------- 148 (264)
T PF05096_consen 109 EGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDGK-RLIMSDGS----------------------------------- 148 (264)
T ss_dssp SSEEEEEETTT--TEEEEEEE---SSS--EEEECSS-CEEEE-SS-----------------------------------
T ss_pred CCeEEEEcccc--ceEEEEEe--cCCcceEEEcCCC-EEEEECCc-----------------------------------
Confidence 99999999875 33333443 3344458887753 79998865
Q ss_pred cceEEEEECCC-CcEEEEEECC-CCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259 159 AGARIVKVDTH-GKIIMDFNDP-NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 159 ~~~~V~~~d~~-G~~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
..+..+||+ -+.+..+... +|+.+...+.+...+|.||---|.+++|.+++..+..
T Consensus 149 --~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 149 --SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp --SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred --cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence 367888885 4565555432 4555667777877899999999999999999987643
No 31
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.51 E-value=2.5e-06 Score=79.16 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=109.2
Q ss_pred CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259 1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
.|++||++--+ ++|.||+-.. .-.|-.+|... +..++.+++-.|.+|++++=++-||++|+..
T Consensus 1069 SPEGiAVDh~~Rn~ywtDS~lD---------------~IevA~LdG~~-rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnR 1132 (1289)
T KOG1214|consen 1069 SPEGIAVDHIRRNMYWTDSVLD---------------KIEVALLDGSE-RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNR 1132 (1289)
T ss_pred Cccceeeeeccceeeeeccccc---------------hhheeecCCce-eeEEEeecccCcceEEeecccCceeeccccc
Confidence 48899999876 6999998621 12355666542 3334568899999999999888899999864
Q ss_pred --CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259 80 --FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG 156 (225)
Q Consensus 80 --~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 156 (225)
-+|-+.+++| .+.++|+...-++|+|+++|+.-+ |-.++.+
T Consensus 1133 enPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAG--------------------------------- 1176 (1289)
T KOG1214|consen 1133 ENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAG--------------------------------- 1176 (1289)
T ss_pred cCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecC---------------------------------
Confidence 4888999987 378888876668999999999765 5555655
Q ss_pred CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259 157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
..+..-+.++|.-.+++.. + +.-+-.++-.++.+|.++|..++|..+.+...
T Consensus 1177 ---t~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1177 ---TKRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred ---CcceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeecccc
Confidence 2234445566543333321 1 11223344456679999999999999887654
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.43 E-value=2.8e-05 Score=68.14 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=83.3
Q ss_pred CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~ 114 (225)
.|.|..+|.++.++....+ +...+.+++++|||+++||+.. ++.|..+|+... + +... .....|.++++++|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~---~--~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATG---K--VVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSS---S--EEEEEE-SSEEEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcc---c--EEEEEecCCCcceEEEcCC
Confidence 7899999998776544443 4444678999999999999975 689999998642 1 2221 13446999999999
Q ss_pred CC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC---CCCcccceeE
Q 047259 115 GS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP---NATYISFVTS 189 (225)
Q Consensus 115 G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p---~g~~~~~~t~ 189 (225)
|+ +|+++.. .+.|..+|.+ .+++..+... ....-+..+.
T Consensus 89 G~~~~v~n~~------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a 132 (369)
T PF02239_consen 89 GKYVYVANYE------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA 132 (369)
T ss_dssp TTEEEEEEEE------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred CCEEEEEecC------------------------------------CCceeEeccccccceeecccccccccccCCCcee
Confidence 98 6667666 5678889865 6777777542 1111223444
Q ss_pred EEE-eCCEEEEee-CCCCeEEEEeCCCc
Q 047259 190 AVE-FEDNLYMAS-IQSKFVGKLPLNTP 215 (225)
Q Consensus 190 ~~~-~~~~Lyv~~-~~~~~i~~~~~~~~ 215 (225)
+.. ..+..|+.+ ...++|+.++....
T Consensus 133 Iv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 133 IVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 443 344444444 44688888876553
No 33
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.37 E-value=8.5e-05 Score=64.50 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=60.5
Q ss_pred CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--------CccccceeEEecCCCE
Q 047259 1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--------GFYFANGVALSKDENF 71 (225)
Q Consensus 1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------~~~~pnGi~~~~dg~~ 71 (225)
.|+++ +.+|| .||++++. |.+ ...+.....|-.+|..+.+...-+. ....|+..+++|||++
T Consensus 48 ~P~~~-~spDg~~lyva~~~--~~R------~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTV--YSR------IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred CCcee-ECCCCCEEEEEecc--ccc------cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE
Confidence 47875 99998 59999985 222 1234557889999998776553322 2457789999999999
Q ss_pred EEEEeCC-CCEEEEEEecC
Q 047259 72 VVVCESW-KFRCRRYWLKG 89 (225)
Q Consensus 72 Lyv~~~~-~~~I~~~~~~~ 89 (225)
|||++.. .+.|..+|+..
T Consensus 119 l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred EEEecCCCCCEEEEEECCC
Confidence 9999866 89999999864
No 34
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.37 E-value=1.5e-05 Score=77.13 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=99.0
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-------------------e-cCcccc
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-------------------H-EGFYFA 60 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-------------------~-~~~~~p 60 (225)
||-+++++++|.+||.|.. +|=.+|.. |.++.+ . =.+.||
T Consensus 476 ~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWP 535 (1899)
T KOG4659|consen 476 FPKGIAFDKMGNLYFADGT-------------------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWP 535 (1899)
T ss_pred cCCceeEccCCcEEEeccc-------------------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecc
Confidence 7999999999999999986 22222221 222111 1 136799
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-----cCC---------------CCCCceEECCCCCEEEE
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-----HLP---------------GGPDNINLAPDGSFWVA 120 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-----~~~---------------g~Pd~i~~d~~G~l~v~ 120 (225)
..++++|=.+.|||-|. +-|+++++.. .+++..+ .++ -.+..|++..+|.|||+
T Consensus 536 T~LaV~Pmdnsl~Vld~--nvvlrit~~~----rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyva 609 (1899)
T KOG4659|consen 536 TSLAVDPMDNSLLVLDT--NVVLRITVVH----RVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVA 609 (1899)
T ss_pred cceeecCCCCeEEEeec--ceEEEEccCc----cEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEE
Confidence 99999996677999986 6888887653 2222221 011 14789999999999999
Q ss_pred eecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC----CC----------------
Q 047259 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND----PN---------------- 180 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~----p~---------------- 180 (225)
+...+- -.+|..+..+|++ ..+.. ++
T Consensus 610 EsD~rr---------------------------------iNrvr~~~tdg~i-~ilaGa~S~C~C~~~~~cdcfs~~~~~ 655 (1899)
T KOG4659|consen 610 ESDGRR---------------------------------INRVRKLSTDGTI-SILAGAKSPCSCDVAACCDCFSLRDVA 655 (1899)
T ss_pred eccchh---------------------------------hhheEEeccCceE-EEecCCCCCCCcccccCCccccccchh
Confidence 998531 2244555555532 23321 00
Q ss_pred --CCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 047259 181 --ATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 181 --g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
...++.++.++. .+|.+|+++.++-+|..+...
T Consensus 656 At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~ 691 (1899)
T KOG4659|consen 656 ATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSAR 691 (1899)
T ss_pred hhccccCCcceEEECCCCcEEEecCCchhhhhhhhc
Confidence 012566676665 589999999999988776543
No 35
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.30 E-value=7.7e-06 Score=78.96 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=113.4
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEeC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL----HEGFYFANGVALSKDENFVVVCES 77 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGi~~~~dg~~Lyv~~~ 77 (225)
|-.++..+||++|+.|-. .|=|+-++ |.++.+ ....++-.-||+||=...|||++.
T Consensus 367 Pvala~a~DGSl~VGDfN-------------------yIRRI~~d-g~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp 426 (1899)
T KOG4659|consen 367 PVALAYAPDGSLIVGDFN-------------------YIRRISQD-GQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDP 426 (1899)
T ss_pred eeeEEEcCCCcEEEccch-------------------heeeecCC-CceEEEEEecCCCccceeEEEecCcCceEEecCC
Confidence 456889999999999876 23344343 333322 234566778999995557999999
Q ss_pred CCCEEEEEEe-cC-CCCCceeEEecc----CC----------------CCCCceEECCCCCEEEEeecCC-----chhh-
Q 047259 78 WKFRCRRYWL-KG-PRQGRLESFIEH----LP----------------GGPDNINLAPDGSFWVALIKMN-----QTGV- 129 (225)
Q Consensus 78 ~~~~I~~~~~-~~-~~~~~~~~~~~~----~~----------------g~Pd~i~~d~~G~l~v~~~~~~-----~~~~- 129 (225)
...+|||+.- .+ ....+.++.++. +| -+|.||++|.+|.||+++...- +..+
T Consensus 427 ~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIs 506 (1899)
T KOG4659|consen 427 LSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIIS 506 (1899)
T ss_pred CcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEE
Confidence 9999999863 22 123445555531 11 1599999999999999987621 1111
Q ss_pred hhhhcChh------------HHHHHHhhhhhhh--hhcc---CCCCcceEEEEECCCCcEEEEEECCCCCcc--------
Q 047259 130 RAIQSCPD------------KWKLLQAYPELIN--LLIP---LGNDAGARIVKVDTHGKIIMDFNDPNATYI-------- 184 (225)
Q Consensus 130 ~~~~~~~~------------~r~~~~~~p~~~~--~~~~---~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~-------- 184 (225)
..+...+. +-.+-..+|-.++ |+-+ ..+ ...|+++++++++.-....|.-..+
T Consensus 507 tlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s 584 (1899)
T KOG4659|consen 507 TLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSAS 584 (1899)
T ss_pred EeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhh
Confidence 11111111 1111222333322 2111 122 5678888888888633322221111
Q ss_pred ---------cceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccccC
Q 047259 185 ---------SFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELA 220 (225)
Q Consensus 185 ---------~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~ 220 (225)
..-..++-..|.|||++..+.+|-++..-+.+-++.
T Consensus 585 kla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ 629 (1899)
T KOG4659|consen 585 KLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTIS 629 (1899)
T ss_pred hhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEE
Confidence 111122335799999999888777765555444443
No 36
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.29 E-value=3.6e-06 Score=72.46 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=92.8
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhhhhhh
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGVRAIQ 133 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~ 133 (225)
..|-||+++..++-|||||.-- -++.++++++. .+...+...| +.+++.++++|.+|.++...+.+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~---a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~----- 185 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGL---AELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDR----- 185 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCCCc---ceeccccccCeeeeecCceeEcCCCeEEEeccccccch-----
Confidence 5799999999997799999764 57788887642 2223322222 579999999999999999864321
Q ss_pred cChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEE----CCCCCcccceeEEEEeCCEEEEeeCCCCeEEE
Q 047259 134 SCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN----DPNATYISFVTSAVEFEDNLYMASIQSKFVGK 209 (225)
Q Consensus 134 ~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~----~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~ 209 (225)
|+++..+ +. .. +.|+++++|+.-|..+++- .|+|- .+..+++.+.+++...-+|.+
T Consensus 186 -----rd~~~a~------l~-g~--~~GRl~~YD~~tK~~~VLld~L~F~NGl------aLS~d~sfvl~~Et~~~ri~r 245 (376)
T KOG1520|consen 186 -----RDFVFAA------LE-GD--PTGRLFRYDPSTKVTKVLLDGLYFPNGL------ALSPDGSFVLVAETTTARIKR 245 (376)
T ss_pred -----hheEEee------ec-CC--CccceEEecCcccchhhhhhcccccccc------cCCCCCCEEEEEeeccceeee
Confidence 2221111 11 12 3899999999887766654 44442 234678999999999999999
Q ss_pred EeCCCccc
Q 047259 210 LPLNTPEA 217 (225)
Q Consensus 210 ~~~~~~~~ 217 (225)
+-+.++-+
T Consensus 246 ywi~g~k~ 253 (376)
T KOG1520|consen 246 YWIKGPKA 253 (376)
T ss_pred eEecCCcc
Confidence 99988776
No 37
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.25 E-value=6.6e-05 Score=64.28 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=98.0
Q ss_pred CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---------CCE
Q 047259 11 GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW---------KFR 81 (225)
Q Consensus 11 G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---------~~~ 81 (225)
-++|+.|..-. + ..++++.+|.+++++.=+++....+| ++++||++.+|++++. +.-
T Consensus 3 ~rvyV~D~~~~------------~-~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFF------------H-MTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGG------------G-SSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccc------------c-ccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 37899988511 1 25799999999888776666666666 7799999999999863 234
Q ss_pred EEEEEecCCCCCceeEEeccC-----CCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259 82 CRRYWLKGPRQGRLESFIEHL-----PGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL 155 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~~-----~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~ 155 (225)
|..||.++- ....++.+... ...+..+++..||+ +||.++.+
T Consensus 69 v~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP------------------------------- 116 (342)
T PF06433_consen 69 VEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP------------------------------- 116 (342)
T ss_dssp EEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS-------------------------------
T ss_pred EEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCC-------------------------------
Confidence 555665541 11122222211 12467889999987 67777663
Q ss_pred CCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCccccc
Q 047259 156 GNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPEAEL 219 (225)
Q Consensus 156 ~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~~~~ 219 (225)
...|.++|.+ ++++..+..|..- .+.+. +.. +.+-.+.+.+..+.++...++.
T Consensus 117 ----a~SVtVVDl~~~kvv~ei~~PGC~------~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 117 ----ATSVTVVDLAAKKVVGEIDTPGCW------LIYPSGNRG-FSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp ----SEEEEEEETTTTEEEEEEEGTSEE------EEEEEETTE-EEEEETTSCEEEEEETSTSSEE
T ss_pred ----CCeEEEEECCCCceeeeecCCCEE------EEEecCCCc-eEEEecCCceEEEEECCCCCEe
Confidence 5688999986 6888899987532 12232 333 4466678888888888776664
No 38
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00023 Score=63.68 Aligned_cols=140 Identities=12% Similarity=0.024 Sum_probs=80.9
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|..+++.+.+..........+|+|||+.|+++... ...|+.++++++ ..+.+. ..++......+++|
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~Lt-~~~~~~~~~~~spD 300 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG---TTTRLT-DSPAIDTSPSYSPD 300 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC---ceEEcc-CCCCccCceeEcCC
Confidence 568999998877776654333344578999999988766543 456999988753 333332 22333446788899
Q ss_pred CC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe
Q 047259 115 GS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF 193 (225)
Q Consensus 115 G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~ 193 (225)
|+ |+++.... ....|.++|.+|.....+....+. ...+ ...++
T Consensus 301 G~~i~f~s~~~----------------------------------g~~~Iy~~d~~g~~~~~lt~~~~~-~~~~-~~Spd 344 (435)
T PRK05137 301 GSQIVFESDRS----------------------------------GSPQLYVMNADGSNPRRISFGGGR-YSTP-VWSPR 344 (435)
T ss_pred CCEEEEEECCC----------------------------------CCCeEEEEECCCCCeEEeecCCCc-ccCe-EECCC
Confidence 87 43332110 034677777776544444432222 1111 12345
Q ss_pred CCEEEEeeCCC--CeEEEEeCCCcc
Q 047259 194 EDNLYMASIQS--KFVGKLPLNTPE 216 (225)
Q Consensus 194 ~~~Lyv~~~~~--~~i~~~~~~~~~ 216 (225)
++.|+++.... .+|.++++++..
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCc
Confidence 66776665433 367777765543
No 39
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.0002 Score=64.35 Aligned_cols=140 Identities=11% Similarity=0.004 Sum_probs=79.8
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|..+++.+.+..........+|+|||+.|+++... ...|+.++++++ ..+.+.. ........++.+|
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg---~~~~lt~-~~~~~~~p~wSpD 316 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK---ALTRITR-HRAIDTEPSWHPD 316 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC---CeEECcc-CCCCccceEECCC
Confidence 457999998777766654333333468999999988776433 346999988753 3333222 2233456788999
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF 193 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~ 193 (225)
|+..+...... ....|+++|.+ |+. ..+.. .+.....+ ...++
T Consensus 317 G~~I~f~s~~~---------------------------------g~~~Iy~~dl~~g~~-~~Lt~-~g~~~~~~-~~SpD 360 (448)
T PRK04792 317 GKSLIFTSERG---------------------------------GKPQIYRVNLASGKV-SRLTF-EGEQNLGG-SITPD 360 (448)
T ss_pred CCEEEEEECCC---------------------------------CCceEEEEECCCCCE-EEEec-CCCCCcCe-eECCC
Confidence 87433322210 03467888876 444 33332 12111111 22345
Q ss_pred CCEEEEeeCCCC--eEEEEeCCCcc
Q 047259 194 EDNLYMASIQSK--FVGKLPLNTPE 216 (225)
Q Consensus 194 ~~~Lyv~~~~~~--~i~~~~~~~~~ 216 (225)
++.||+++...+ .|+++++++..
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCC
Confidence 677777755433 67777776554
No 40
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.00013 Score=60.39 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=97.2
Q ss_pred CcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCC
Q 047259 3 NDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 3 ndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
.+++.+++. +||..... .+.|+.++.+ |++... ..+..-+.||++..++. +.+++-..
T Consensus 25 SGLTy~pd~~tLfaV~d~-----------------~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~ 85 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDE-----------------PGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERD 85 (248)
T ss_dssp EEEEEETTTTEEEEEETT-----------------TTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTT
T ss_pred cccEEcCCCCeEEEEECC-----------------CCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCC
Confidence 478899874 56666554 5789999986 654332 35667799999998874 77777778
Q ss_pred CEEEEEEecCC--CCCce--eEEeccCC--C--CCCceEECCC-CCEEEEeecCCchhhhhhh--cC--------hhHH-
Q 047259 80 FRCRRYWLKGP--RQGRL--ESFIEHLP--G--GPDNINLAPD-GSFWVALIKMNQTGVRAIQ--SC--------PDKW- 139 (225)
Q Consensus 80 ~~I~~~~~~~~--~~~~~--~~~~~~~~--g--~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~--~~--------~~~r- 139 (225)
++|+.++++.. ..... +.+.-..+ + .-.|+++|+. ++||++.-.....++++-. .. ..+.
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 99999998532 11111 11110111 1 2478999997 5688775332111222111 00 0111
Q ss_pred -HHHHhhhhhhh-------hhccCCCCcceEEEEECCCCcEEEEEECCCC-----CcccceeEEEE-eCCEEEEeeCCCC
Q 047259 140 -KLLQAYPELIN-------LLIPLGNDAGARIVKVDTHGKIIMDFNDPNA-----TYISFVTSAVE-FEDNLYMASIQSK 205 (225)
Q Consensus 140 -~~~~~~p~~~~-------~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g-----~~~~~~t~~~~-~~~~Lyv~~~~~~ 205 (225)
+.....|+.+. ++.-... ..+++++|.+|+++..+....| +.++.+=+++. .+|+|||++= -+
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~e--s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pN 242 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDE--SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PN 242 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETT--TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TT
T ss_pred ccceeccccceEEcCCCCeEEEEECC--CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-Cc
Confidence 11111222221 1111232 6689999999999999987654 23556667765 4799999984 56
Q ss_pred eEEEEe
Q 047259 206 FVGKLP 211 (225)
Q Consensus 206 ~i~~~~ 211 (225)
..++|.
T Consensus 243 lfy~f~ 248 (248)
T PF06977_consen 243 LFYRFE 248 (248)
T ss_dssp EEEEEE
T ss_pred eEEEeC
Confidence 777763
No 41
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00029 Score=62.98 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=52.4
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|.++++.+.+...........|+|||+.|+++.. +...|+++++++. ..+.+.. ..+.-....+.++
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~---~~~~lt~-~~~~~~~~~~Spd 344 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS---NPRRISF-GGGRYSTPVWSPR 344 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC---CeEEeec-CCCcccCeEECCC
Confidence 45799999887887777655555667899999998866543 3458999988753 2333321 1222345778899
Q ss_pred CCEEE
Q 047259 115 GSFWV 119 (225)
Q Consensus 115 G~l~v 119 (225)
|+..+
T Consensus 345 G~~ia 349 (435)
T PRK05137 345 GDLIA 349 (435)
T ss_pred CCEEE
Confidence 87443
No 42
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00034 Score=62.93 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=52.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|.++++.+.+.........++|+|||++|+++.. +...|++++++++ ..+.+.. ........++.+|
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~-~g~~~~~~~~SpD 360 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTF-EGEQNLGGSITPD 360 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEec-CCCCCcCeeECCC
Confidence 45799999887887777655555677899999998876653 3457888888653 2322221 1122335688999
Q ss_pred CCEEE
Q 047259 115 GSFWV 119 (225)
Q Consensus 115 G~l~v 119 (225)
|+..+
T Consensus 361 G~~l~ 365 (448)
T PRK04792 361 GRSMI 365 (448)
T ss_pred CCEEE
Confidence 97433
No 43
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.16 E-value=3.5e-06 Score=45.59 Aligned_cols=28 Identities=32% Similarity=0.613 Sum_probs=25.0
Q ss_pred ccccceeEEecCCCEEEEEeCCCCEEEEE
Q 047259 57 FYFANGVALSKDENFVVVCESWKFRCRRY 85 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~ 85 (225)
+..|.||+++++|+ |||+|+++++|++|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35799999998876 99999999999886
No 44
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.16 E-value=5.6e-05 Score=65.32 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=51.4
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC-------------eEEEEecCccccceeEEecCC
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE-------------ETTVLHEGFYFANGVALSKDE 69 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~pnGi~~~~dg 69 (225)
..|++++||.||++..... -....++ .....|.|++++.+.. ..++.+.++..|.|++|+|..
T Consensus 117 ~~l~fgpDG~LYvs~G~~~--~~~~~~~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~t 192 (331)
T PF07995_consen 117 GGLAFGPDGKLYVSVGDGG--NDDNAQD--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNT 192 (331)
T ss_dssp EEEEE-TTSEEEEEEB-TT--TGGGGCS--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTT
T ss_pred ccccCCCCCcEEEEeCCCC--Ccccccc--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCC
Confidence 4689999999999977521 1111111 1345899999998632 245677899999999999993
Q ss_pred CEEEEEeCCCC---EEEEEE
Q 047259 70 NFVVVCESWKF---RCRRYW 86 (225)
Q Consensus 70 ~~Lyv~~~~~~---~I~~~~ 86 (225)
..||++|.+.. .|.++.
T Consensus 193 g~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 193 GRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TEEEEEEE-SSSSEEEEEE-
T ss_pred CcEEEEccCCCCCcEEEEec
Confidence 45999997654 555554
No 45
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00084 Score=60.06 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=53.5
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEE-EEeC-CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVV-VCES-WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Ly-v~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
..+||.+|.++++.+.+...........|+|||+.|+ +++. +..+|++++++++ ..+.+.. ..+.....++.+|
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt~-~~~~~~~~~~SpD 341 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRITW-EGSQNQDADVSSD 341 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEeec-CCCCccCEEECCC
Confidence 3469999998888887766655667899999999774 4443 2348888888753 2333321 2223456788999
Q ss_pred CCEEEE
Q 047259 115 GSFWVA 120 (225)
Q Consensus 115 G~l~v~ 120 (225)
|+..+.
T Consensus 342 G~~Ia~ 347 (429)
T PRK03629 342 GKFMVM 347 (429)
T ss_pred CCEEEE
Confidence 975443
No 46
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00082 Score=60.03 Aligned_cols=77 Identities=17% Similarity=0.044 Sum_probs=49.7
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|..+++.+.+.........++|+|||+.|+++.. +...|+.++.++. ..+.+.. ..+......+.+|
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~wSpD 294 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---GLRRLTQ-SSGIDTEPFFSPD 294 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC---CcEECCC-CCCCCcCeEEcCC
Confidence 45799999887777666433334457899999998876543 3457888887653 2333322 2233345789999
Q ss_pred CCE
Q 047259 115 GSF 117 (225)
Q Consensus 115 G~l 117 (225)
|+.
T Consensus 295 G~~ 297 (427)
T PRK02889 295 GRS 297 (427)
T ss_pred CCE
Confidence 973
No 47
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00093 Score=59.63 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=52.2
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|..+|+.+.+...........|+|||+.|.++.. ++..|+.++++++ ..+.+.. .++.-....+.+|
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g---~~~~LT~-~~~~d~~p~~SPD 287 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK---TLTQITN-YPGIDVNGNFVED 287 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC---cEEEccc-CCCccCccEECCC
Confidence 45899999988888887653333334789999998876654 3468999998753 3333322 2222224578888
Q ss_pred CC-EEEEe
Q 047259 115 GS-FWVAL 121 (225)
Q Consensus 115 G~-l~v~~ 121 (225)
|+ |+++.
T Consensus 288 G~~I~F~S 295 (419)
T PRK04043 288 DKRIVFVS 295 (419)
T ss_pred CCEEEEEE
Confidence 85 55554
No 48
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.0011 Score=59.12 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=51.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.++.++++.+.+..........+|+|||+.|+++... ...|+.++++++ ..+.+.. ..+......+.+|
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~~spD 297 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR---QLSRVTN-HPAIDTEPFWGKD 297 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEccc-CCCCcCCeEECCC
Confidence 457999998877776664333334468999999988765543 348999998753 2333322 2233445678888
Q ss_pred CC-EEEE
Q 047259 115 GS-FWVA 120 (225)
Q Consensus 115 G~-l~v~ 120 (225)
|+ |+++
T Consensus 298 g~~i~f~ 304 (430)
T PRK00178 298 GRTLYFT 304 (430)
T ss_pred CCEEEEE
Confidence 87 4444
No 49
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.06 E-value=1.7e-05 Score=55.16 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=54.9
Q ss_pred CceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCccc
Q 047259 107 DNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYIS 185 (225)
Q Consensus 107 d~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~ 185 (225)
|+++++++ |.+|+++...+.... .++..++. ..+ .|+++++||..+.+.++.+ | +.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~------~~~~~~le-----------~~~--~GRll~ydp~t~~~~vl~~--~--L~ 57 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRR------DWVYDLLE-----------GRP--TGRLLRYDPSTKETTVLLD--G--LY 57 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TT------GHHHHHHH-----------T-----EEEEEEETTTTEEEEEEE--E--ES
T ss_pred CceeEecCCCEEEEEeCccccCcc------ceeeeeec-----------CCC--CcCEEEEECCCCeEEEehh--C--CC
Confidence 57899998 999999998653221 12222222 122 8999999999877666664 2 34
Q ss_pred ceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259 186 FVTSAVE--FEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 186 ~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
.+++++. ++..|+|++....+|.|+.+.++
T Consensus 58 fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 58 FPNGVALSPDESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp SEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred ccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence 4566654 46789999999999999998764
No 50
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.00093 Score=59.76 Aligned_cols=78 Identities=10% Similarity=-0.037 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...|+.++..+|+.+.+.........++|+|||+.|+++... ...|+.++++++ ..+.+.. ........++.+|
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg---~~~~lt~-~~~~~~~~~wSPD 297 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---QIRQVTD-GRSNNTEPTWFPD 297 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEccC-CCCCcCceEECCC
Confidence 457888888777766665433334568999999989876443 347999998753 3333322 2223457788999
Q ss_pred CCEE
Q 047259 115 GSFW 118 (225)
Q Consensus 115 G~l~ 118 (225)
|+..
T Consensus 298 G~~I 301 (429)
T PRK03629 298 SQNL 301 (429)
T ss_pred CCEE
Confidence 9743
No 51
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.04 E-value=9e-05 Score=69.16 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=90.9
Q ss_pred EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhh
Q 047259 53 LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRA 131 (225)
Q Consensus 53 ~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~ 131 (225)
+-.++..|.|||++--++-+|++|+...+|-.-.++|. ..+++....--.|.+|++|+ .|+||.+++...
T Consensus 1063 ~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~---~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe------ 1133 (1289)
T KOG1214|consen 1063 VNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGS---ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE------ 1133 (1289)
T ss_pred ecccCCCccceeeeeccceeeeeccccchhheeecCCc---eeeEEEeecccCcceEEeecccCceeecccccc------
Confidence 34678899999999999999999999999988888873 33344332334699999998 689999998821
Q ss_pred hhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEE
Q 047259 132 IQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGK 209 (225)
Q Consensus 132 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~ 209 (225)
...|.+.+.||+-.+++-.-+ +..+.+++ +....|-..+.+.+++--
T Consensus 1134 ----------------------------nPkIets~mDG~NrRilin~D---igLPNGLtfdpfs~~LCWvDAGt~rleC 1182 (1289)
T KOG1214|consen 1134 ----------------------------NPKIETSSMDGENRRILINTD---IGLPNGLTFDPFSKLLCWVDAGTKRLEC 1182 (1289)
T ss_pred ----------------------------CCcceeeccCCccceEEeecc---cCCCCCceeCcccceeeEEecCCcceeE
Confidence 557899999998766654311 22233333 345677777888888877
Q ss_pred EeCCCccccc
Q 047259 210 LPLNTPEAEL 219 (225)
Q Consensus 210 ~~~~~~~~~~ 219 (225)
+..++...+.
T Consensus 1183 ~~p~g~gRR~ 1192 (1289)
T KOG1214|consen 1183 TLPDGTGRRV 1192 (1289)
T ss_pred ecCCCCcchh
Confidence 7776665544
No 52
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.01 E-value=0.00036 Score=59.09 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
+.|+++....---|+|--+..--...|- +....|-+. +|..++ +++++++.+|.+..|.. | .||+++++.+
T Consensus 153 HLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-idv~s~--evl~~GLsmPhSPRWhd-g-rLwvldsgtG 223 (335)
T TIGR03032 153 HLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-IDIPSG--EVVASGLSMPHSPRWYQ-G-KLWLLNSGRG 223 (335)
T ss_pred eecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-EEeCCC--CEEEcCccCCcCCcEeC-C-eEEEEECCCC
Confidence 4689999643347878554211112221 122344332 455444 57789999999999985 3 4999999999
Q ss_pred EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE-EEEeecCC
Q 047259 81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF-WVALIKMN 125 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l-~v~~~~~~ 125 (225)
+|.++++++ |..++.+ ..||+|.|+++. |++ +|+....|
T Consensus 224 ev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 224 ELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred EEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 999999863 3566665 589999999999 765 55555555
No 53
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.001 Score=59.47 Aligned_cols=79 Identities=14% Similarity=0.016 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...|+.+|..+++.+.+.........++|+|||+.|+++.+ +...|+.++++++ ..+.+.. ..+.....++++|
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g---~~~~lt~-~~~~~~~~~~spD 302 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR---QLTRLTN-HFGIDTEPTWAPD 302 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC---CeEECcc-CCCCccceEECCC
Confidence 45789999877776665433233347899999998876644 3447999998753 3333221 2223346789999
Q ss_pred CCEEE
Q 047259 115 GSFWV 119 (225)
Q Consensus 115 G~l~v 119 (225)
|+..+
T Consensus 303 G~~l~ 307 (433)
T PRK04922 303 GKSIY 307 (433)
T ss_pred CCEEE
Confidence 97433
No 54
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.0011 Score=59.30 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|..+++++.+.........++|+|||+.|+++... ...|+.++++++ ..+.+. .........++.++
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt-~~g~~~~~~~~SpD 346 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLT-FQGNYNARASVSPD 346 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEee-cCCCCccCEEECCC
Confidence 457999998878877765544445678999999988666432 346888887653 232222 11223446889999
Q ss_pred CCEE
Q 047259 115 GSFW 118 (225)
Q Consensus 115 G~l~ 118 (225)
|+..
T Consensus 347 G~~I 350 (433)
T PRK04922 347 GKKI 350 (433)
T ss_pred CCEE
Confidence 9743
No 55
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.97 E-value=0.0015 Score=55.32 Aligned_cols=104 Identities=17% Similarity=0.112 Sum_probs=64.3
Q ss_pred EEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeCCC-
Q 047259 5 VIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV---LHEGFYFANGVALSKDENFVVVCESWK- 79 (225)
Q Consensus 5 v~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~dg~~Lyv~~~~~- 79 (225)
-++++||+ ||.|+.. + +...|.|-.||.. ...+. ..+..-.|.-|.+.|||+.|.|++-+-
T Consensus 56 g~fs~dG~~LytTEnd--~-----------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 56 GVFSPDGRLLYTTEND--Y-----------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred EEEcCCCCEEEEeccc--c-----------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 35678886 6666554 1 3468999999986 33333 345667899999999999899998431
Q ss_pred ----------------CEEEEEEecCCC-CCceeEEeccCC-CCCCceEECCCCCEEEEeec
Q 047259 80 ----------------FRCRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 80 ----------------~~I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~ 123 (225)
-.|..++...+. +++.+ +.+... -.-..++++++|.+|++...
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEec
Confidence 133333322111 11111 100001 12578999999999999876
No 56
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.94 E-value=0.0022 Score=56.54 Aligned_cols=78 Identities=18% Similarity=0.090 Sum_probs=49.0
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...|+.+|..+++.+.+.........++|+|||+.|+++... ...|+.+++.++ ..+.+.. ..+......+.++
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~---~~~~l~~-~~~~~~~~~~s~d 288 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK---QLTRLTN-GPGIDTEPSWSPD 288 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC---CEEECCC-CCCCCCCEEECCC
Confidence 357899998777666554433344568999999988876543 347999988653 2222221 2222335677888
Q ss_pred CCEE
Q 047259 115 GSFW 118 (225)
Q Consensus 115 G~l~ 118 (225)
|+..
T Consensus 289 g~~l 292 (417)
T TIGR02800 289 GKSI 292 (417)
T ss_pred CCEE
Confidence 8743
No 57
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.92 E-value=0.00031 Score=58.26 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=78.9
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCC-CCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~ 114 (225)
.+..+.||.++-+...-.+-....-||+ .||+.||++|- +.+|+.+++++-. ....++-.+..| ..-+-+.+- +
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 5677888876432222221122334555 66777999985 6799999987521 112222111111 123445554 6
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEEC--------CCCCc--
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFND--------PNATY-- 183 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~--------p~g~~-- 183 (225)
|.||.-.+. ...|+++||. |+++..+.. .+...
T Consensus 185 G~IyANVW~------------------------------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~ 228 (264)
T PF05096_consen 185 GKIYANVWQ------------------------------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQP 228 (264)
T ss_dssp TEEEEEETT------------------------------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--
T ss_pred CEEEEEeCC------------------------------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccc
Confidence 889988877 4589999997 999988732 00110
Q ss_pred -ccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259 184 -ISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 184 -~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
..-.++++. ..++|||+.-.-+++..+++.++
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e~ 263 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVEK 263 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE-
T ss_pred cCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEec
Confidence 123455565 46999999999999999988654
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0032 Score=52.83 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=92.2
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC--CCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP--GGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~--g~Pd~i~~d~~ 114 (225)
...|..||.+..+..-+. .+..+.=+|++|.|- ++.+..++..|..||+.--..+..++|.-..+ ....+|.+.++
T Consensus 121 D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d 198 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD 198 (311)
T ss_pred CCeEEeeEecCCCCceEE-ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC
Confidence 556777776544443332 244567789999983 66666677799999987322455556542212 24679999999
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECC-CCCcccceeEEEE
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDP-NATYISFVTSAVE 192 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p-~g~~~~~~t~~~~ 192 (225)
|...+-... .+.+..+|. +|.++..++.. +...++ -.++.
T Consensus 199 GK~iLlsT~------------------------------------~s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~f 240 (311)
T KOG1446|consen 199 GKSILLSTN------------------------------------ASFIYLLDAFDGTVKSTFSGYPNAGNLP--LSATF 240 (311)
T ss_pred CCEEEEEeC------------------------------------CCcEEEEEccCCcEeeeEeeccCCCCcc--eeEEE
Confidence 985554444 345666775 79988888753 322233 33333
Q ss_pred -eCCEEEEeeCCCCeEEEEeCCCcccccC
Q 047259 193 -FEDNLYMASIQSKFVGKLPLNTPEAELA 220 (225)
Q Consensus 193 -~~~~Lyv~~~~~~~i~~~~~~~~~~~~~ 220 (225)
.++...++....++|.+..+.+..+-.+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 5677778888888998888866554443
No 59
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.0016 Score=57.34 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=49.4
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEE--------EEEeCCCCeEEEEecCccccceeEEecCCCEEE
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQL--------LKYDPELEETTVLHEGFYFANGVALSKDENFVV 73 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v--------~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Ly 73 (225)
.-.|+++|||.||+|.-.... .. ..++. ....|.+ +..|+.....++..-++..|.|++|+|..+.||
T Consensus 179 g~~l~f~pDG~Lyvs~G~~~~-~~-~aq~~--~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 179 GGRLVFGPDGKLYVTTGSNGD-PA-LAQDN--VSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred cccEEECCCCcEEEEeCCCCC-cc-cccCc--cccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 346899999999999766211 00 00000 0113434 444544344456677899999999999956699
Q ss_pred EEeCCCCEE
Q 047259 74 VCESWKFRC 82 (225)
Q Consensus 74 v~~~~~~~I 82 (225)
+++-+...+
T Consensus 255 ~~e~g~d~~ 263 (399)
T COG2133 255 TTEHGPDAL 263 (399)
T ss_pred EEecCCCcc
Confidence 999887444
No 60
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0018 Score=57.81 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=47.2
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--EEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF--RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...|+.+|..+++.+.+......-..++|+|||+.|+++....+ .|+.+++++. ..+.+.. ..+.....++.+|
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~wSpD 302 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG---TPSQLTS-GAGNNTEPSWSPD 302 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC---CeEeecc-CCCCcCCEEECCC
Confidence 45688888876765555432223346899999998877654333 6778887643 2333321 2233446788888
Q ss_pred CC
Q 047259 115 GS 116 (225)
Q Consensus 115 G~ 116 (225)
|+
T Consensus 303 G~ 304 (429)
T PRK01742 303 GQ 304 (429)
T ss_pred CC
Confidence 87
No 61
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0033 Score=56.01 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=50.7
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.+|.++++.+.+...........|+|||+.||++.. +...|++++++++ ..+.+.. .........++++
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~~~~lt~-~~~~~~~~~~Spd 341 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---RAERVTF-VGNYNARPRLSAD 341 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEeec-CCCCccceEECCC
Confidence 45799999988887776655445567899999998866543 2457999887653 2322221 1122345678888
Q ss_pred CCEE
Q 047259 115 GSFW 118 (225)
Q Consensus 115 G~l~ 118 (225)
|+..
T Consensus 342 g~~i 345 (430)
T PRK00178 342 GKTL 345 (430)
T ss_pred CCEE
Confidence 8743
No 62
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.83 E-value=6.8e-05 Score=44.13 Aligned_cols=38 Identities=24% Similarity=0.102 Sum_probs=34.1
Q ss_pred EEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 52 VLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 52 ~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
++..++..|+||++++.++.||++|...+.|.+++++|
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 34467889999999999999999999999999999876
No 63
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.83 E-value=0.0048 Score=54.41 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=51.5
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
...||.++..++..+.+...........|+|||+.|+++.. +...|+.+++++. ..+.+.. ........+++++
T Consensus 257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~---~~~~l~~-~~~~~~~~~~spd 332 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG---EVRRLTF-RGGYNASPSWSPD 332 (417)
T ss_pred CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEeec-CCCCccCeEECCC
Confidence 45789999877776666544333446789999998865543 3348999988653 2322221 2233457788999
Q ss_pred CCEEEEee
Q 047259 115 GSFWVALI 122 (225)
Q Consensus 115 G~l~v~~~ 122 (225)
|+.++...
T Consensus 333 g~~i~~~~ 340 (417)
T TIGR02800 333 GDLIAFVH 340 (417)
T ss_pred CCEEEEEE
Confidence 87544433
No 64
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.0027 Score=56.70 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=81.8
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
....||.++.++++.+.+......-....|+|||+.||++.. +...|++++++++ ..+.+... +. .+..+++
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g---~~~rlt~~--g~-~~~~~SP 328 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG---SVEQVVFH--GK-NNSSVST 328 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC---CeEeCccC--CC-cCceECC
Confidence 357899999877877776544333345689999998877653 3348999998753 33222211 21 2358899
Q ss_pred CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe
Q 047259 114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF 193 (225)
Q Consensus 114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~ 193 (225)
||+..+-....... ........|..+|.++.....+... +. ...++ ..++
T Consensus 329 DG~~Ia~~~~~~~~---------------------------~~~~~~~~I~v~d~~~g~~~~LT~~-~~-~~~p~-~SPD 378 (419)
T PRK04043 329 YKNYIVYSSRETNN---------------------------EFGKNTFNLYLISTNSDYIRRLTAN-GV-NQFPR-FSSD 378 (419)
T ss_pred CCCEEEEEEcCCCc---------------------------ccCCCCcEEEEEECCCCCeEECCCC-CC-cCCeE-ECCC
Confidence 99844333321100 0000024677788764433444431 21 11122 2345
Q ss_pred CCEEEEeeCC--CCeEEEEeCCCcccccCC
Q 047259 194 EDNLYMASIQ--SKFVGKLPLNTPEAELAP 221 (225)
Q Consensus 194 ~~~Lyv~~~~--~~~i~~~~~~~~~~~~~~ 221 (225)
+..|+++... ...+..+++++..++..|
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 5666555432 224777777776555443
No 65
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.77 E-value=0.00084 Score=61.90 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=64.9
Q ss_pred cEEEEEeCCC-----CeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC------CCCceeEEecc--CCC
Q 047259 38 GQLLKYDPEL-----EETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP------RQGRLESFIEH--LPG 104 (225)
Q Consensus 38 g~v~~~d~~~-----~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~~~~~~~~--~~g 104 (225)
++|-.+|..+ .++...+.-...|.|++++|||+++|++.-.++.|..|+.+.. ++......... +.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888765 2455556677899999999999999999999999999998641 11111111211 233
Q ss_pred CCCceEECCCCCEEEEeecCC
Q 047259 105 GPDNINLAPDGSFWVALIKMN 125 (225)
Q Consensus 105 ~Pd~i~~d~~G~l~v~~~~~~ 125 (225)
.|-..++|++|+.|++.+-.+
T Consensus 376 GPLHTaFDg~G~aytslf~ds 396 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDS 396 (635)
T ss_pred CcceEEECCCCCEEEeEeecc
Confidence 699999999999999998754
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.72 E-value=0.0043 Score=49.78 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=53.5
Q ss_pred CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259 37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG 115 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G 115 (225)
.|.|..+|..+++...... .......++++|+++.++++.. .+.|..|++... .....+. ........+++++++
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~--~~~~~~~-~~~~~i~~~~~~~~~ 231 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG--KCLGTLR-GHENGVNSVAFSPDG 231 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCC--ceecchh-hcCCceEEEEEcCCC
Confidence 6678888876444333332 3346789999999987777765 788999988642 1111121 123346788999998
Q ss_pred CEEEEeec
Q 047259 116 SFWVALIK 123 (225)
Q Consensus 116 ~l~v~~~~ 123 (225)
.++++...
T Consensus 232 ~~~~~~~~ 239 (289)
T cd00200 232 YLLASGSE 239 (289)
T ss_pred cEEEEEcC
Confidence 88877653
No 67
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.70 E-value=0.0033 Score=53.28 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=55.1
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-------cCccccceeEEecCC-----C
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-------EGFYFANGVALSKDE-----N 70 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-------~~~~~pnGi~~~~dg-----~ 70 (225)
.++.+|++|+||+-|++....... ....+.-+|+.+|..++++.... ...++-|.|+++... .
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~-----~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQP-----PKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSST-----TGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCC-----CCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcce
Confidence 578999999999999983211000 00134568999999888754321 234567889999832 5
Q ss_pred EEEEEeCCCCEEEEEEecC
Q 047259 71 FVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 71 ~Lyv~~~~~~~I~~~~~~~ 89 (225)
++|++|.+...|..|++..
T Consensus 79 ~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp EEEEEETTTCEEEEEETTT
T ss_pred EEEEeCCCcCcEEEEEccC
Confidence 8999999999999999874
No 68
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.01 Score=53.14 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEE--EEecCCCCCceeEEeccCCCCCCceEEC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRR--YWLKGPRQGRLESFIEHLPGGPDNINLA 112 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~--~~~~~~~~~~~~~~~~~~~g~Pd~i~~d 112 (225)
...||.++.++|+.+.+...-......+|+|||+.|.++.. +...|+. ++++.+..+..+.+.....+.....++.
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 56789999887777666543334456899999988866653 2335555 3444321233333332222233467889
Q ss_pred CCCC
Q 047259 113 PDGS 116 (225)
Q Consensus 113 ~~G~ 116 (225)
+||+
T Consensus 290 PDG~ 293 (428)
T PRK01029 290 PDGT 293 (428)
T ss_pred CCCC
Confidence 9997
No 69
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.67 E-value=0.0051 Score=54.97 Aligned_cols=80 Identities=19% Similarity=0.011 Sum_probs=49.2
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
..+|+.+|.+....+.+......-..++|+|||+.|+++.. ....|+.++++++ ....+. ..++.....++.+|
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l~-~~~g~~~~~~~SPD 250 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVVA-NFKGSNSAPAWSPD 250 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEee-cCCCCccceEECCC
Confidence 45788888763333444433334457899999998866543 2357999998753 333333 23444456788888
Q ss_pred CC-EEEE
Q 047259 115 GS-FWVA 120 (225)
Q Consensus 115 G~-l~v~ 120 (225)
|+ |+++
T Consensus 251 G~~la~~ 257 (427)
T PRK02889 251 GRTLAVA 257 (427)
T ss_pred CCEEEEE
Confidence 86 4433
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.65 E-value=0.015 Score=46.56 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=86.2
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF-ANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
..+.+.++|++.++-.. .|.+..++..+++.......... ...+.+.++++.++++. ..+.
T Consensus 13 ~~~~~~~~~~~l~~~~~-----------------~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~ 74 (289)
T cd00200 13 TCVAFSPDGKLLATGSG-----------------DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKT 74 (289)
T ss_pred EEEEEcCCCCEEEEeec-----------------CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCe
Confidence 35667777765555432 56777777655543333333333 35899999997555554 4789
Q ss_pred EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcce
Q 047259 82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGA 161 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~ 161 (225)
|..+++... .....+. ........+.+.++++++++... .+
T Consensus 75 i~i~~~~~~--~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~------------------------------------~~ 115 (289)
T cd00200 75 IRLWDLETG--ECVRTLT-GHTSYVSSVAFSPDGRILSSSSR------------------------------------DK 115 (289)
T ss_pred EEEEEcCcc--cceEEEe-ccCCcEEEEEEcCCCCEEEEecC------------------------------------CC
Confidence 999988642 1222232 12234567888888887777653 34
Q ss_pred EEEEECCC-CcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCC
Q 047259 162 RIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 162 ~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~ 213 (225)
.|..++.. ++....+....+ .++.+... ++.++++....+.|..+++.
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTD----WVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred eEEEEECCCcEEEEEeccCCC----cEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 55666654 555555542221 24444433 24454554456677777765
No 71
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.63 E-value=0.00065 Score=61.44 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=52.4
Q ss_pred ccccceeEEecCCCEEEEEeCCCC----------------EEEEEEecCC----CCCceeEEecc----CCC--------
Q 047259 57 FYFANGVALSKDENFVVVCESWKF----------------RCRRYWLKGP----RQGRLESFIEH----LPG-------- 104 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~----------------~I~~~~~~~~----~~~~~~~~~~~----~~g-------- 104 (225)
+..|.+|++.|+...+|++.+++. +|+||-+.+. ....+++|+.. ...
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 347999999999888999988654 7899887631 35567788742 111
Q ss_pred -----CCCceEECCCCCEEEEeecCC
Q 047259 105 -----GPDNINLAPDGSFWVALIKMN 125 (225)
Q Consensus 105 -----~Pd~i~~d~~G~l~v~~~~~~ 125 (225)
.||||++|+.|+||++.-+..
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cccccCCCceEECCCCCEEEEecCCC
Confidence 399999999999999987643
No 72
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.59 E-value=0.00098 Score=61.03 Aligned_cols=130 Identities=20% Similarity=0.234 Sum_probs=75.8
Q ss_pred CccccceeEEecCCCEEEEEeCCCC-------------------EEEEEEecCC----CCCceeEEecc-C---------
Q 047259 56 GFYFANGVALSKDENFVVVCESWKF-------------------RCRRYWLKGP----RQGRLESFIEH-L--------- 102 (225)
Q Consensus 56 ~~~~pnGi~~~~dg~~Lyv~~~~~~-------------------~I~~~~~~~~----~~~~~~~~~~~-~--------- 102 (225)
.+..|.||.++|....||++.+... +|+++.+++. .....++|... .
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 4557999999998888999987655 8999998743 12234444421 1
Q ss_pred -------CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEE
Q 047259 103 -------PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIM 174 (225)
Q Consensus 103 -------~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~ 174 (225)
-..||||++|++|+||++.=....... ++...+.+..... ... ....+...++. |++..
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~-----------l~g~t~~G~~~~~-~~~-~G~~~~~~~~~~g~~~r 494 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNN-----------LPGVTPDGEVYDF-ARN-DGNNVWAYDPDTGELKR 494 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCCCCCcc-----------cccccccCceeee-eec-ccceeeeccccccceee
Confidence 125999999999999999755321100 0000111100000 000 01114445554 77777
Q ss_pred EEECCCCCcccceeEEEE--eCCEEEEee
Q 047259 175 DFNDPNATYISFVTSAVE--FEDNLYMAS 201 (225)
Q Consensus 175 ~~~~p~g~~~~~~t~~~~--~~~~Lyv~~ 201 (225)
.+..|.|. .+|+.++ ++..|||.-
T Consensus 495 f~~~P~ga---E~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 495 FLVGPNGA---EITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eccCCCCc---ccccceECCCCCEEEEEE
Confidence 77778776 4455554 467888753
No 73
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.54 E-value=0.014 Score=52.18 Aligned_cols=79 Identities=14% Similarity=-0.026 Sum_probs=48.4
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
..+|+.+|.+......+......-..++|+|||+.|+++... ...|+.+++.++ ..+.+. ..++.-..+++.+|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l~-~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVVA-SFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEEe-cCCCccCceeECCC
Confidence 367888887644444444444455789999999988555432 357999988642 333333 23333346788888
Q ss_pred CCEEE
Q 047259 115 GSFWV 119 (225)
Q Consensus 115 G~l~v 119 (225)
|+..+
T Consensus 259 G~~La 263 (429)
T PRK01742 259 GSRLA 263 (429)
T ss_pred CCEEE
Confidence 87433
No 74
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.003 Score=55.59 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=72.9
Q ss_pred ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhh
Q 047259 54 HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGV 129 (225)
Q Consensus 54 ~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~ 129 (225)
++++..+.|+++..++ +|++.+. .+.+|+....++....++...+|+ .-..|++++||.|||+.....+...
T Consensus 127 a~~~~~~~~~a~~~~~--~~~~n~~--~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~ 202 (399)
T COG2133 127 AQGRLVYFGISEPGGG--LYVANRV--AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPAL 202 (399)
T ss_pred cccceeeeEEEeecCC--ceEEEEE--EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCccc
Confidence 4667788999997653 7888653 667777221344444444444554 2467999999999999987522110
Q ss_pred hhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCc----ccceeEEEEe--CCEEEEeeCC
Q 047259 130 RAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATY----ISFVTSAVEF--EDNLYMASIQ 203 (225)
Q Consensus 130 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~----~~~~t~~~~~--~~~Lyv~~~~ 203 (225)
+.+ + .. ..++|++++.+|.+...-..++.++ ..++.+++.+ .+.||+++.+
T Consensus 203 ---aq~----------~--------~~--~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g 259 (399)
T COG2133 203 ---AQD----------N--------VS--LAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHG 259 (399)
T ss_pred ---ccC----------c--------cc--cccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecC
Confidence 000 0 01 1455666665544322222211111 2344455543 5899999999
Q ss_pred CCeE
Q 047259 204 SKFV 207 (225)
Q Consensus 204 ~~~i 207 (225)
.+.+
T Consensus 260 ~d~~ 263 (399)
T COG2133 260 PDAL 263 (399)
T ss_pred CCcc
Confidence 8776
No 75
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.44 E-value=0.019 Score=47.78 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=32.2
Q ss_pred eEEEEECC-CCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259 161 ARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 161 ~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
+.+.-.|- +|+-+..+.. +..+..+++..++.|++-.-...|-+.++...
T Consensus 214 g~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 214 GEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred ceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence 34444333 3555555442 23456677888899999888888888877654
No 76
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.41 E-value=0.019 Score=49.45 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=76.9
Q ss_pred ccceeEEecCCCEEEEEeCCC------CEEEEEEecCCCCCceeEEecc-----------CCCCCCceEECCCCC-EEEE
Q 047259 59 FANGVALSKDENFVVVCESWK------FRCRRYWLKGPRQGRLESFIEH-----------LPGGPDNINLAPDGS-FWVA 120 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~------~~I~~~~~~~~~~~~~~~~~~~-----------~~g~Pd~i~~d~~G~-l~v~ 120 (225)
-+.||++.++|. +||++... .+|++|+.+|.......+-... ......+|++.++|+ ||++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 567999977776 99999999 9999999885321211111100 012357899999998 8888
Q ss_pred eecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--CcEEEEEECCCCC-----cccceeEEEE-
Q 047259 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--GKIIMDFNDPNAT-----YISFVTSAVE- 192 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G~~~~~~~~p~g~-----~~~~~t~~~~- 192 (225)
.-.+..+ .+.... + ... ...+++++|+. |+....+..+-.. .-..++.++.
T Consensus 165 ~E~~l~~-------d~~~~~----------~--~~~--~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al 223 (326)
T PF13449_consen 165 MESPLKQ-------DGPRAN----------P--DNG--SPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL 223 (326)
T ss_pred ECccccC-------CCcccc----------c--ccC--ceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE
Confidence 7663110 000000 0 001 13678889975 5444443322110 1235666654
Q ss_pred eCCEEEEeeCC-------CCeEEEEeCCCc
Q 047259 193 FEDNLYMASIQ-------SKFVGKLPLNTP 215 (225)
Q Consensus 193 ~~~~Lyv~~~~-------~~~i~~~~~~~~ 215 (225)
.+++|+|=+=. ..+|.++++...
T Consensus 224 ~d~~lLvLER~~~~~~~~~~ri~~v~l~~a 253 (326)
T PF13449_consen 224 PDGRLLVLERDFSPGTGNYKRIYRVDLSDA 253 (326)
T ss_pred CCCcEEEEEccCCCCccceEEEEEEEcccc
Confidence 57778887643 456666666544
No 77
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.39 E-value=0.0025 Score=58.39 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=69.3
Q ss_pred CCcEEEcC-CCcEEEEcCCCCCCcchh---hhhcccCCCCcEEEEEeCCCC-------eEEEEec---------------
Q 047259 2 TNDVIEAS-DGSLYFTVSSKKYTPAEY---YKDLVEGKPHGQLLKYDPELE-------ETTVLHE--------------- 55 (225)
Q Consensus 2 pndv~~~~-dG~iy~td~~~~~~~~~~---~~~~~~~~~~g~v~~~d~~~~-------~~~~~~~--------------- 55 (225)
|+++.+.+ +|.+||+.+... .+... ..........|.||+++...+ +++.++.
T Consensus 352 pEgi~~~p~~g~vY~a~T~~~-~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~ 430 (524)
T PF05787_consen 352 PEGITVNPDDGEVYFALTNNS-GRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKC 430 (524)
T ss_pred ccCeeEeCCCCEEEEEEecCC-CCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcc
Confidence 78999988 579999987632 11000 011223567899999998755 4555332
Q ss_pred ---CccccceeEEecCCCEEEEEeCCCCE------------EEEEEe--------cCCCCCceeEEecc-CCCCCCceEE
Q 047259 56 ---GFYFANGVALSKDENFVVVCESWKFR------------CRRYWL--------KGPRQGRLESFIEH-LPGGPDNINL 111 (225)
Q Consensus 56 ---~~~~pnGi~~~~dg~~Lyv~~~~~~~------------I~~~~~--------~~~~~~~~~~~~~~-~~g~Pd~i~~ 111 (225)
.+..|.+|+++++|+ |||++-..+. ++.+.. .+...+....|... .....-|+++
T Consensus 431 ~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~f 509 (524)
T PF05787_consen 431 DDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCF 509 (524)
T ss_pred cCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceE
Confidence 256899999999998 7777643332 222211 11123344444421 1124578999
Q ss_pred CCCCC-EEEE
Q 047259 112 APDGS-FWVA 120 (225)
Q Consensus 112 d~~G~-l~v~ 120 (225)
++||+ |||.
T Consensus 510 spDg~tlFvn 519 (524)
T PF05787_consen 510 SPDGRTLFVN 519 (524)
T ss_pred CCCCCEEEEE
Confidence 99997 5553
No 78
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.38 E-value=0.0015 Score=54.22 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=58.4
Q ss_pred CcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC--CCCeEEEEe--------cCccccceeEEecCCCE
Q 047259 3 NDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP--ELEETTVLH--------EGFYFANGVALSKDENF 71 (225)
Q Consensus 3 ndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~~~~~~~~~--------~~~~~pnGi~~~~dg~~ 71 (225)
++|+.++. +++|+..-. ....||.++. ......... -.+.-+.+++++|..+.
T Consensus 121 EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~ 184 (248)
T PF06977_consen 121 EGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGH 184 (248)
T ss_dssp EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCe
Confidence 57888885 467776332 1345777765 212222211 12345899999999989
Q ss_pred EEEEeCCCCEEEEEEecCCCCCceeEEeccCC------CCCCceEECCCCCEEEEeec
Q 047259 72 VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP------GGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 72 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~------g~Pd~i~~d~~G~l~v~~~~ 123 (225)
|||-...+.+|..++.+|...+... +..... ..|.||++|++|+||++.-+
T Consensus 185 lliLS~es~~l~~~d~~G~~~~~~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 185 LLILSDESRLLLELDRQGRVVSSLS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred EEEEECCCCeEEEECCCCCEEEEEE-eCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 9999999999999997663111111 111111 14899999999999998743
No 79
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.016 Score=51.95 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=57.8
Q ss_pred cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC--CCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 047259 4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE--LEETTVLHEGFYFANGVALSKDENFVVVCESW-- 78 (225)
Q Consensus 4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~-- 78 (225)
.+.+.|||+ |+|+... .+..+||.++.+ +++.+.+.........++|+|||+.|+++...
T Consensus 285 ~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g 349 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG 349 (428)
T ss_pred CeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence 356677775 5555332 113468887653 23344444333445678999999988766443
Q ss_pred CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEE
Q 047259 79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFW 118 (225)
Q Consensus 79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~ 118 (225)
...|+.++++++ ..+.+.. .+....+..+.+||+..
T Consensus 350 ~~~I~v~dl~~g---~~~~Lt~-~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 350 VRQICVYDLATG---RDYQLTT-SPENKESPSWAIDSLHL 385 (428)
T ss_pred CcEEEEEECCCC---CeEEccC-CCCCccceEECCCCCEE
Confidence 458999998753 3333332 22344678899999743
No 80
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.33 E-value=0.017 Score=49.13 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=80.3
Q ss_pred EEEEEeCCCCeEEEEe--cCccccce-eEEecCCCEEEEEeC----CCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259 39 QLLKYDPELEETTVLH--EGFYFANG-VALSKDENFVVVCES----WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL 111 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~--~~~~~pnG-i~~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~ 111 (225)
-.+.+|..+|+..... +....-+| -+||+||++||.+|. +.+.|-.|+.... ......|.. ..-.|=.+.+
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s-~GIGPHel~l 106 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPS-HGIGPHELLL 106 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecC-CCcChhhEEE
Confidence 4678888877765443 22233344 678999999999974 5789999998621 222222221 1125889999
Q ss_pred CCCC-CEEEEeecCCchhhhhhhcChhH-HH-HHHhhhhhhhhhccCCCCcceEEEEEC-CCCcEEEEEECCCCCcccce
Q 047259 112 APDG-SFWVALIKMNQTGVRAIQSCPDK-WK-LLQAYPELINLLIPLGNDAGARIVKVD-THGKIIMDFNDPNATYISFV 187 (225)
Q Consensus 112 d~~G-~l~v~~~~~~~~~~~~~~~~~~~-r~-~~~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~~~~~~~p~g~~~~~~ 187 (225)
.+|| .|.|++.+ +..+|.. |. +.. + . . ...+..+| .+|++++....|....--.+
T Consensus 107 ~pDG~tLvVANGG--------I~Thpd~GR~kLNl--~----t---M----~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 107 MPDGETLVVANGG--------IETHPDSGRAKLNL--D----T---M----QPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred cCCCCEEEEEcCC--------CccCcccCceecCh--h----h---c----CCceEEEecCCCceeeeeecCccccccce
Confidence 9999 78888887 2334332 11 110 0 0 1 33566674 46888888766542110011
Q ss_pred eEE-EEeCCEEEEee
Q 047259 188 TSA-VEFEDNLYMAS 201 (225)
Q Consensus 188 t~~-~~~~~~Lyv~~ 201 (225)
-=+ +..+|.++++.
T Consensus 166 RHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAM 180 (305)
T ss_pred eeEEecCCCcEEEEE
Confidence 112 23457777764
No 81
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.30 E-value=0.00033 Score=37.72 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.7
Q ss_pred CCCcEEEcCCCcEEEEcCC
Q 047259 1 FTNDVIEASDGSLYFTVSS 19 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~ 19 (225)
+|++|+++++|+||++|..
T Consensus 3 ~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp SEEEEEEETTSEEEEEECC
T ss_pred CCcEEEEeCCCCEEEEECC
Confidence 5899999999999999986
No 82
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.30 E-value=0.014 Score=54.08 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=84.5
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC------------------------------------
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK------------------------------------ 79 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~------------------------------------ 79 (225)
-.+.+-.+|.++.++.-.+.-...|.++++++||+++|++..++
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 36778888987554433233345899999999999999996221
Q ss_pred ---CEEEEEEecCCC-CC-ceeEEeccCCCCCCceEECCCCCEEEEeecCC--chhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259 80 ---FRCRRYWLKGPR-QG-RLESFIEHLPGGPDNINLAPDGSFWVALIKMN--QTGVRAIQSCPDKWKLLQAYPELINLL 152 (225)
Q Consensus 80 ---~~I~~~~~~~~~-~~-~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~--~~~~~~~~~~~~~r~~~~~~p~~~~~~ 152 (225)
++|..+|...+. .+ ....++ ..+-.|=|+++++||+..++..... .+++++ ..++..+
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv----~k~k~~~---------- 357 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV----RKLDDLF---------- 357 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEC----hhhhhhh----------
Confidence 233333322100 00 111111 1345799999999998555554422 112111 0000000
Q ss_pred ccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccc
Q 047259 153 IPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAE 218 (225)
Q Consensus 153 ~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~ 218 (225)
.+ +++++..++..+.. |. ...-.....+|..|.+-+....|.+.++.+..++
T Consensus 358 -------~~---~~~~~~~vvaevev--Gl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~ 409 (635)
T PRK02888 358 -------DG---KIKPRDAVVAEPEL--GL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRA 409 (635)
T ss_pred -------hc---cCCccceEEEeecc--CC--CcceEEECCCCCEEEeEeecceeEEEehHHHHHH
Confidence 00 12444445555544 32 1222233446789999999999999998875543
No 83
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.28 E-value=0.017 Score=50.66 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=80.7
Q ss_pred EEEEEeCCCCeEEEEe-------cCccccceeEEec---CCCEEEEEeCCCCEEEEEEecCCCCCc-----eeEEeccCC
Q 047259 39 QLLKYDPELEETTVLH-------EGFYFANGVALSK---DENFVVVCESWKFRCRRYWLKGPRQGR-----LESFIEHLP 103 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~-------~~~~~pnGi~~~~---dg~~Lyv~~~~~~~I~~~~~~~~~~~~-----~~~~~~~~~ 103 (225)
++|++|+.++.++.+. ..+.-|.|+|+.. +|+.-.+.....+.+..|.+.....+. .+.| .++
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence 6899998778776653 3344588999963 354222333455788888885211121 2333 256
Q ss_pred CCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--C-cEEEEEECC
Q 047259 104 GGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--G-KIIMDFNDP 179 (225)
Q Consensus 104 g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G-~~~~~~~~p 179 (225)
+.|.||++|.+ |.||+++-. ..||+++.+ + ..-..+...
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-------------------------------------~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-------------------------------------VGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-------------------------------------TEEEEEESSCCC-S--EEEEEB
T ss_pred CcceEEEEecccCCEEEecCc-------------------------------------cEEEEEecCCCCCCcceeeecc
Confidence 67999999975 889998855 367887754 2 222222211
Q ss_pred CCC-ccc---ceeEEEE--eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259 180 NAT-YIS---FVTSAVE--FEDNLYMASIQSKFVGKLPLNTPEA 217 (225)
Q Consensus 180 ~g~-~~~---~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~~ 217 (225)
.|. ... +++.... ..|.|.+++.+.+...+|++.+..+
T Consensus 251 ~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~ 294 (381)
T PF02333_consen 251 DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNA 294 (381)
T ss_dssp SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--
T ss_pred cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCc
Confidence 222 111 2332222 2478999999999999999987643
No 84
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.21 E-value=0.033 Score=50.06 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEe
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG----FYFANGVALSKDENFVVVCE 76 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~pnGi~~~~dg~~Lyv~~ 76 (225)
|-|++...|||+.|.|..+ .|.++.||.++|+..-..++ -..-.+|.|+||++. +++.
T Consensus 192 FV~~VRysPDG~~Fat~gs-----------------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~ 253 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS-----------------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTV 253 (603)
T ss_pred ceeeEEECCCCCeEEEecC-----------------CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce-EEEe
Confidence 6789999999999999887 78999999988875544432 234578999999984 4666
Q ss_pred CCCCEEEEEEecC
Q 047259 77 SWKFRCRRYWLKG 89 (225)
Q Consensus 77 ~~~~~I~~~~~~~ 89 (225)
+....+..++...
T Consensus 254 SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 254 SADKTIKIWDVST 266 (603)
T ss_pred cCCceEEEEEeec
Confidence 6666666666654
No 85
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.047 Score=49.28 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=66.7
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC-CCCe-EEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP-ELEE-TTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~-~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
+++++.+||++.++-+. ...|..+|. ..+. ++.+.....+.+.++|+|+++ ++++-+.++
T Consensus 207 ~~~~fs~d~~~l~s~s~-----------------D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~ 268 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSD-----------------DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDG 268 (456)
T ss_pred eeeEECCCCcEEEEecC-----------------CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCC
Confidence 56777777775555443 344555554 3334 344445567789999999995 889999999
Q ss_pred EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.|..+++.++ ...+.+.. ..+.-.++++.++|++.++...
T Consensus 269 tvriWd~~~~--~~~~~l~~-hs~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 269 TVRIWDVRTG--ECVRKLKG-HSDGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred cEEEEeccCC--eEEEeeec-cCCceEEEEECCCCCEEEEcCC
Confidence 9999998752 22333332 2233467899999998887743
No 86
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.18 E-value=0.011 Score=53.15 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=51.1
Q ss_pred eEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCc---e-eEEeccCCCCCCceEECCC-------CCE
Q 047259 49 ETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGR---L-ESFIEHLPGGPDNINLAPD-------GSF 117 (225)
Q Consensus 49 ~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~---~-~~~~~~~~g~Pd~i~~d~~-------G~l 117 (225)
+++++++++..|.+|++.|||+ |||++...++|++++..+..... . .+......+.+-+|+++++ +.|
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 4567889999999999999986 99999988999999865421110 1 1111111245678999865 368
Q ss_pred EEEeec
Q 047259 118 WVALIK 123 (225)
Q Consensus 118 ~v~~~~ 123 (225)
||+-..
T Consensus 100 Yvsyt~ 105 (454)
T TIGR03606 100 YISYTY 105 (454)
T ss_pred EEEEec
Confidence 998644
No 87
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.16 E-value=0.0014 Score=55.64 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW 78 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~ 78 (225)
|++...- +|+|||.|++ +|.|+++|+++|+.+.++....+|.||+|. |+.++|+-+.
T Consensus 205 PhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 205 PHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred CcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 3344333 6889999987 789999999889999998888899999999 7888887764
No 88
>PTZ00421 coronin; Provisional
Probab=97.14 E-value=0.11 Score=47.54 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=50.9
Q ss_pred CcEEEEEeCCCCe--------EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259 37 HGQLLKYDPELEE--------TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN 108 (225)
Q Consensus 37 ~g~v~~~d~~~~~--------~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~ 108 (225)
.|.|..||..++. +..+.........++|+|++..++++-+..+.|..+++... .....+. ........
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~~~l~-~h~~~V~s 173 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAVEVIK-CHSDQITS 173 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEEEEEc-CCCCceEE
Confidence 5666666654321 11222233445789999986547777777889999998642 1122221 12233467
Q ss_pred eEECCCCCEEEEeec
Q 047259 109 INLAPDGSFWVALIK 123 (225)
Q Consensus 109 i~~d~~G~l~v~~~~ 123 (225)
+++.++|++.++...
T Consensus 174 la~spdG~lLatgs~ 188 (493)
T PTZ00421 174 LEWNLDGSLLCTTSK 188 (493)
T ss_pred EEEECCCCEEEEecC
Confidence 889999998777655
No 89
>PTZ00420 coronin; Provisional
Probab=97.13 E-value=0.12 Score=48.02 Aligned_cols=62 Identities=5% Similarity=0.082 Sum_probs=43.5
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
...+.++|+|++..++++.+..+.|..+++.... ....+ . .+.....++++++|.++++...
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i-~-~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI-N-MPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE-e-cCCcEEEEEECCCCCEEEEEec
Confidence 4567899999998777777778899999986421 11111 1 2334568899999998887654
No 90
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.023 Score=47.75 Aligned_cols=172 Identities=12% Similarity=0.035 Sum_probs=83.1
Q ss_pred CCCcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCC-----------------CEEEEEEecCCCCCc
Q 047259 35 KPHGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWK-----------------FRCRRYWLKGPRQGR 94 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~-----------------~~I~~~~~~~~~~~~ 94 (225)
...|.|-.||.+ .....+. ...-.|.-+.|.+||++|.|++-+- -++.-++..++.+-+
T Consensus 137 ~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 137 PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 457888889876 3344332 3456799999999999888876421 112222211111111
Q ss_pred eeEEeccCC-CCCCceEECCCCCEEEEeecC--CchhhhhhhcChhHHHH-HHhhhhh--------hhhhccCCCCcceE
Q 047259 95 LESFIEHLP-GGPDNINLAPDGSFWVALIKM--NQTGVRAIQSCPDKWKL-LQAYPEL--------INLLIPLGNDAGAR 162 (225)
Q Consensus 95 ~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~--~~~~~~~~~~~~~~r~~-~~~~p~~--------~~~~~~~~~~~~~~ 162 (225)
++++...+. -.-..++.++||++|.++.-. ++..-..+.....-+.+ +..+|+. +.-+.-+.. .+.
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~--~gl 293 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR--DGL 293 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc--CCe
Confidence 111110000 024789999999999987642 21110011100000000 0011221 111111222 566
Q ss_pred EEEECCCCcEEEEEECCCCCcccce-----eEEEEeCCEEEEeeCCCCeEEEE
Q 047259 163 IVKVDTHGKIIMDFNDPNATYISFV-----TSAVEFEDNLYMASIQSKFVGKL 210 (225)
Q Consensus 163 V~~~d~~G~~~~~~~~p~g~~~~~~-----t~~~~~~~~Lyv~~~~~~~i~~~ 210 (225)
|..-+|.|....++.-..|.++... .+++...+-+-|++- .+++.-+
T Consensus 294 V~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg-~G~~~~~ 345 (366)
T COG3490 294 VALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSG-QGRIIFY 345 (366)
T ss_pred EEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecC-CceEEec
Confidence 7777788887777776677765322 222333445555554 4444433
No 91
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.0052 Score=50.14 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=65.6
Q ss_pred CCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259 2 TNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 2 pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~ 80 (225)
+|+++.+.|- .+|++|+- .|....|-.+.-.+....+=..+|.+.. -......|.|++++.+|+ |||+..+.+
T Consensus 160 sNgl~Wd~d~K~fY~iDsl-n~~V~a~dyd~~tG~~snr~~i~dlrk~----~~~e~~~PDGm~ID~eG~-L~Va~~ng~ 233 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSL-NYEVDAYDYDCPTGDLSNRKVIFDLRKS----QPFESLEPDGMTIDTEGN-LYVATFNGG 233 (310)
T ss_pred CccccccccCcEEEEEccC-ceEEeeeecCCCcccccCcceeEEeccC----CCcCCCCCCcceEccCCc-EEEEEecCc
Confidence 6899999876 58999886 2433222222111111111111222100 012356899999999987 999999999
Q ss_pred EEEEEEecCCCCCceeEEeccCCC-CCCceEECCC--CCEEEEeec
Q 047259 81 RCRRYWLKGPRQGRLESFIEHLPG-GPDNINLAPD--GSFWVALIK 123 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~i~~d~~--G~l~v~~~~ 123 (225)
+|.++++.+++ -...+. +|. .-..+++... .-+||+...
T Consensus 234 ~V~~~dp~tGK--~L~eik--lPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 234 TVQKVDPTTGK--ILLEIK--LPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEEEECCCCCc--EEEEEE--cCCCceEEEEecCCCccEEEEEehh
Confidence 99999997531 111111 332 2346677765 357888766
No 92
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.083 Score=47.71 Aligned_cols=122 Identities=18% Similarity=0.143 Sum_probs=81.4
Q ss_pred ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhh
Q 047259 54 HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQ 133 (225)
Q Consensus 54 ~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~ 133 (225)
.+.....++++|+||++ ..++-+.+..|..+++... ....+++.. .......+++.++|++.++.....
T Consensus 200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~-~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~-------- 268 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD-GRNLKTLKG-HSTYVTSVAFSPDGNLLVSGSDDG-------- 268 (456)
T ss_pred cccccceeeeEECCCCc-EEEEecCCceEEEeeccCC-CeEEEEecC-CCCceEEEEecCCCCEEEEecCCC--------
Confidence 34556789999999998 6788888888888888321 123445543 333457899999998888776611
Q ss_pred cChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeC
Q 047259 134 SCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPL 212 (225)
Q Consensus 134 ~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~ 212 (225)
.-+|+.+.. |+.+..+..-.+ .++.+.. .++.++++......|.+.++
T Consensus 269 --------------------------tvriWd~~~-~~~~~~l~~hs~----~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 269 --------------------------TVRIWDVRT-GECVRKLKGHSD----GISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred --------------------------cEEEEeccC-CeEEEeeeccCC----ceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 234444433 788888876443 3555554 35555555556888888888
Q ss_pred CCccc
Q 047259 213 NTPEA 217 (225)
Q Consensus 213 ~~~~~ 217 (225)
.+...
T Consensus 318 ~~~~~ 322 (456)
T KOG0266|consen 318 ETGSK 322 (456)
T ss_pred CCCce
Confidence 87763
No 93
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.99 E-value=0.13 Score=41.30 Aligned_cols=51 Identities=16% Similarity=-0.070 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+.|+.+|..+|++.-..+............ ++.+||.... ++|+.++..+
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~v~v~~~~-~~l~~~d~~t 95 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGAPVVD-GGRVYVGTSD-GSLYALDAKT 95 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSGEEEE-TTEEEEEETT-SEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEeeccccccceeeec-ccccccccce-eeeEecccCC
Confidence 6799999987787543322211111112223 3458888743 4999999654
No 94
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.99 E-value=0.019 Score=48.56 Aligned_cols=129 Identities=11% Similarity=0.164 Sum_probs=81.4
Q ss_pred cceeEEecC--CCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCC--CCCceEECCCCCEEEEeecCCchhhhhhhc
Q 047259 60 ANGVALSKD--ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPG--GPDNINLAPDGSFWVALIKMNQTGVRAIQS 134 (225)
Q Consensus 60 pnGi~~~~d--g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g--~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~ 134 (225)
-.|+|+... +.+||.++..+++|-.|+-.=.......-|.+- +|. .|-||.-- .|+|||+-......
T Consensus 140 YkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~------- 211 (336)
T TIGR03118 140 YKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD------- 211 (336)
T ss_pred eeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc-------
Confidence 357777743 578999999999999997431111111123321 232 47777555 37999997663210
Q ss_pred ChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEE--E-----eCCEEEEeeCCCCeE
Q 047259 135 CPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAV--E-----FEDNLYMASIQSKFV 207 (225)
Q Consensus 135 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~--~-----~~~~Lyv~~~~~~~i 207 (225)
.+. . ......+.|-+||++|++++.+.+ .|. +..+=.++ + ..+.|.|+++++.+|
T Consensus 212 ---~~d---~----------v~G~G~G~VdvFd~~G~l~~r~as-~g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~I 273 (336)
T TIGR03118 212 ---RND---E----------VAGAGLGYVNVFTLNGQLLRRVAS-SGR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTI 273 (336)
T ss_pred ---ccc---c----------ccCCCcceEEEEcCCCcEEEEecc-CCc-ccCCceeeeChhhhCCCCCCeEEeecCCcee
Confidence 000 0 011127899999999999999976 233 33333332 1 258999999999999
Q ss_pred EEEeCCC
Q 047259 208 GKLPLNT 214 (225)
Q Consensus 208 ~~~~~~~ 214 (225)
-.|+...
T Consensus 274 naFD~~s 280 (336)
T TIGR03118 274 NAYDPQS 280 (336)
T ss_pred EEecCCC
Confidence 9999863
No 95
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.98 E-value=0.093 Score=46.25 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=74.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CC-CCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LP-GGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~-g~Pd~i~~d~~ 114 (225)
.|.++.+|..+|+..= ......+..++.. ++.||+... .+.|+.++.+++ ..++... .. ......++ .+
T Consensus 265 ~g~l~ald~~tG~~~W-~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG----~~~W~~~~~~~~~~~sp~v-~~ 335 (394)
T PRK11138 265 NGNLVALDLRSGQIVW-KREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGG----VELWSQSDLLHRLLTAPVL-YN 335 (394)
T ss_pred CCeEEEEECCCCCEEE-eecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCC----cEEEcccccCCCcccCCEE-EC
Confidence 5788999988776321 1122333445544 346998875 578999998642 1222211 11 11122233 25
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF 193 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~ 193 (225)
|.+|+++.. +.+..+|+ +|+++.....+.+... +..+..
T Consensus 336 g~l~v~~~~-------------------------------------G~l~~ld~~tG~~~~~~~~~~~~~~---s~P~~~ 375 (394)
T PRK11138 336 GYLVVGDSE-------------------------------------GYLHWINREDGRFVAQQKVDSSGFL---SEPVVA 375 (394)
T ss_pred CEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCcce---eCCEEE
Confidence 788887543 56778887 5998887765433222 222346
Q ss_pred CCEEEEeeCCCCeEEEEeCC
Q 047259 194 EDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 194 ~~~Lyv~~~~~~~i~~~~~~ 213 (225)
+++|||++. ++.|..++++
T Consensus 376 ~~~l~v~t~-~G~l~~~~~~ 394 (394)
T PRK11138 376 DDKLLIQAR-DGTVYAITRP 394 (394)
T ss_pred CCEEEEEeC-CceEEEEeCC
Confidence 889999964 5677777653
No 96
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.98 E-value=0.01 Score=53.87 Aligned_cols=120 Identities=14% Similarity=0.214 Sum_probs=74.4
Q ss_pred CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC-------eEEEEec-----C------------
Q 047259 2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE-------ETTVLHE-----G------------ 56 (225)
Q Consensus 2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------~~~~~~~-----~------------ 56 (225)
|+++++.+ .|++|||....... ..-..........|.|++|-+.++ ++++.+. .
T Consensus 419 pE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~ 497 (616)
T COG3211 419 PEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN 497 (616)
T ss_pred ccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence 78899998 46899997762211 111112234567899999988766 6666532 2
Q ss_pred -ccccceeEEecCCCEEEEEeCCCC--------EEEEEEecCCCCCceeEEeccCC-CCCCceEECCCCC-EEEEeec
Q 047259 57 -FYFANGVALSKDENFVVVCESWKF--------RCRRYWLKGPRQGRLESFIEHLP-GGPDNINLAPDGS-FWVALIK 123 (225)
Q Consensus 57 -~~~pnGi~~~~dg~~Lyv~~~~~~--------~I~~~~~~~~~~~~~~~~~~~~~-g~Pd~i~~d~~G~-l~v~~~~ 123 (225)
+..|.+|+++|.|+ |||++-+.+ -+..+...+...+....|..... ..-.|.++.+||+ +||...-
T Consensus 498 ~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQH 574 (616)
T COG3211 498 WFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQH 574 (616)
T ss_pred cccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecC
Confidence 23399999999998 888775543 22222223334556666653211 1346889999986 7777544
No 97
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=96.96 E-value=0.043 Score=46.81 Aligned_cols=125 Identities=13% Similarity=0.188 Sum_probs=74.3
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC------------ccccceeEEe--
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG------------FYFANGVALS-- 66 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------------~~~pnGi~~~-- 66 (225)
+.|+|..+++|++.++-.+ ...|+++++.+|++.=...+ +.+-....+-
T Consensus 145 HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~ 207 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE 207 (299)
T ss_pred EeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEecc
Confidence 3688888999988777554 55788888777765433221 2333344444
Q ss_pred --cCCCEEEEEe---------CCCCEEEEEEecCCCCCceeEEecc----CCCCCCceEECCCCCEEEEeecCCchhhhh
Q 047259 67 --KDENFVVVCE---------SWKFRCRRYWLKGPRQGRLESFIEH----LPGGPDNINLAPDGSFWVALIKMNQTGVRA 131 (225)
Q Consensus 67 --~dg~~Lyv~~---------~~~~~I~~~~~~~~~~~~~~~~~~~----~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~ 131 (225)
+++..+.+-+ ...++|+.++.........+.+... ......++..-++|+++|+...
T Consensus 208 ~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~-------- 279 (299)
T PF14269_consen 208 SNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN-------- 279 (299)
T ss_pred CCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC--------
Confidence 3443223332 1456777777764222222222200 1112345666677888888876
Q ss_pred hhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC
Q 047259 132 IQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND 178 (225)
Q Consensus 132 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~ 178 (225)
.+++.+++++|+++..+..
T Consensus 280 ----------------------------~g~~~E~~~~G~vv~~~~f 298 (299)
T PF14269_consen 280 ----------------------------NGRISEFTPDGEVVWEAQF 298 (299)
T ss_pred ----------------------------CceEEEECCCCCEEEEEEC
Confidence 6799999999999887653
No 98
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.93 E-value=0.094 Score=49.18 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=72.2
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
+.++..|||.+.+|-.. .|.|-.||..+|-+-... +.-..-.++.|+.+|+ ..++.+-.++
T Consensus 354 ~~l~YSpDgq~iaTG~e-----------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGt 415 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAE-----------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGT 415 (893)
T ss_pred eeEEECCCCcEEEeccC-----------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCe
Confidence 45777888887777443 678888887767665554 4456778999999998 7789999999
Q ss_pred EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
|..+|+.. -.+.++|....|-.-.-+++|+.|.|..+...
T Consensus 416 VRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 416 VRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 99999863 12445554222222356899999998887655
No 99
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.068 Score=45.02 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=69.5
Q ss_pred ccceeEEecCCCEEEEEeC-CCCEEEEEEecCCCCCceeEEeccCCC--------CCCceEECC-CCCEEEEeecCCchh
Q 047259 59 FANGVALSKDENFVVVCES-WKFRCRRYWLKGPRQGRLESFIEHLPG--------GPDNINLAP-DGSFWVALIKMNQTG 128 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~g--------~Pd~i~~d~-~G~l~v~~~~~~~~~ 128 (225)
+-.|+|++|+++.|||+-. ..-+|+.++.... ....-....+. --.|+.+|+ .|+++|-...
T Consensus 182 GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~---~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E----- 253 (316)
T COG3204 182 GFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS---SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE----- 253 (316)
T ss_pred CceeeecCCCCceEEEEEccCCcEEEEEecCCc---ccccccccCcccccceEeeccccceecCCCCcEEEEecC-----
Confidence 4469999999988888764 4456666653211 11111100110 135777776 4677776666
Q ss_pred hhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCC-----cccceeEEE-EeCCEEEEeeC
Q 047259 129 VRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNAT-----YISFVTSAV-EFEDNLYMASI 202 (225)
Q Consensus 129 ~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~-----~~~~~t~~~-~~~~~Lyv~~~ 202 (225)
...++++|.+|.+++.+..-.|. -++..-+++ +++|.|||.+=
T Consensus 254 -------------------------------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 254 -------------------------------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred -------------------------------CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 45899999999988887654332 133344444 45799999973
Q ss_pred CCCeEEEEeCC
Q 047259 203 QSKFVGKLPLN 213 (225)
Q Consensus 203 ~~~~i~~~~~~ 213 (225)
.+-.++|..+
T Consensus 303 -Pnlfy~F~~~ 312 (316)
T COG3204 303 -PNLFYRFTPQ 312 (316)
T ss_pred -CCcceecccC
Confidence 3555555444
No 100
>PTZ00420 coronin; Provisional
Probab=96.85 E-value=0.24 Score=45.99 Aligned_cols=52 Identities=8% Similarity=-0.129 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+.|..||..+++.............++|++||+ ++++....+.|..+++..
T Consensus 147 DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC
Confidence 6778888877665433333334567899999998 556666678899999864
No 101
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.85 E-value=0.02 Score=49.36 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=68.5
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-E--ecCc-------------cccceeEE
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-L--HEGF-------------YFANGVAL 65 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~--~~~~-------------~~pnGi~~ 65 (225)
+++|++.++|.+|+++-+.. ......+|++++.+ |++.. + ...+ ....||++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV 154 (326)
T ss_pred hhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEE
Confidence 46889988999999988721 01124688899876 65422 1 1111 23579999
Q ss_pred ecCCCEEEEEeCCC---------------CEEEEEEecCCCCCceeEEeccC--------CCCCCceEECCCCCEEEEee
Q 047259 66 SKDENFVVVCESWK---------------FRCRRYWLKGPRQGRLESFIEHL--------PGGPDNINLAPDGSFWVALI 122 (225)
Q Consensus 66 ~~dg~~Lyv~~~~~---------------~~I~~~~~~~~~~~~~~~~~~~~--------~g~Pd~i~~d~~G~l~v~~~ 122 (225)
+|||+.||++.... -+|++|++..... ....|.-.+ ...+..|+.-++|+++|-.-
T Consensus 155 ~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~-~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 155 SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGE-PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCc-cceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 99999887776432 4788888763110 112222111 12456778888999999876
Q ss_pred cC
Q 047259 123 KM 124 (225)
Q Consensus 123 ~~ 124 (225)
..
T Consensus 234 ~~ 235 (326)
T PF13449_consen 234 DF 235 (326)
T ss_pred cC
Confidence 63
No 102
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.83 E-value=0.19 Score=40.46 Aligned_cols=133 Identities=18% Similarity=0.133 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCeEEEEecCc-ccccee--EEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 37 HGQLLKYDPELEETTVLHEGF-YFANGV--ALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~-~~pnGi--~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
.|.|..+|+.+|+..--..-. .....+ ++ ++++.+|+++ ..+.|+.++..++ + ..+....++.......-.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~~l~~~d~~tG---~-~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVAS-GDGNLYALDAKTG---K-VLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEE-TTSEEEEEETTTS---E-EEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEc-CCCEEEEEECCCC---C-EEEEeeccccccceeeec
Confidence 467788887666532221111 123333 33 2455699984 6789999998542 2 122212222111222334
Q ss_pred CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEEC-CCCcEEEEE-ECCC-CCcccceeEE
Q 047259 114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVD-THGKIIMDF-NDPN-ATYISFVTSA 190 (225)
Q Consensus 114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~~~~~-~~p~-g~~~~~~t~~ 190 (225)
++.+|++... +.+..+| .+|+++... .... ..........
T Consensus 76 ~~~v~v~~~~-------------------------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 76 GGRVYVGTSD-------------------------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp TTEEEEEETT-------------------------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred ccccccccce-------------------------------------eeeEecccCCcceeeeeccccccccccccccCc
Confidence 5778887733 3788899 679998774 4321 1101122223
Q ss_pred EEeCCEEEEeeCCCCeEEEEeCC
Q 047259 191 VEFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 191 ~~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
...++.+|++.. +..|..+++.
T Consensus 119 ~~~~~~~~~~~~-~g~l~~~d~~ 140 (238)
T PF13360_consen 119 AVDGDRLYVGTS-SGKLVALDPK 140 (238)
T ss_dssp EEETTEEEEEET-CSEEEEEETT
T ss_pred eEecCEEEEEec-cCcEEEEecC
Confidence 345777777765 5677777655
No 103
>PTZ00421 coronin; Provisional
Probab=96.77 E-value=0.37 Score=44.05 Aligned_cols=85 Identities=9% Similarity=-0.039 Sum_probs=50.6
Q ss_pred CCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 35 KPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
...+.|..||..+++......+ ...-+.++|+|||+ ++++-+.++.|..+++... .....+..+.......+.+.+
T Consensus 145 s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDG--TIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred eCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCC--cEEEEEecCCCCcceEEEEcC
Confidence 3467788888776654444433 34568999999998 6667777889999998642 111122211111233455666
Q ss_pred CCCEEEEee
Q 047259 114 DGSFWVALI 122 (225)
Q Consensus 114 ~G~l~v~~~ 122 (225)
++...++..
T Consensus 222 ~~~~ivt~G 230 (493)
T PTZ00421 222 RKDLIITLG 230 (493)
T ss_pred CCCeEEEEe
Confidence 665555443
No 104
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.77 E-value=0.059 Score=46.47 Aligned_cols=167 Identities=20% Similarity=0.185 Sum_probs=92.3
Q ss_pred cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEE--EEec------CccccceeEEecCCCEEEE
Q 047259 4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETT--VLHE------GFYFANGVALSKDENFVVV 74 (225)
Q Consensus 4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~--~~~~------~~~~pnGi~~~~dg~~Lyv 74 (225)
.+++++||+ +|+.+.. |.+ ...+.++-.|-.||..+-+.+ +.+. .+.+++-++++.||+++||
T Consensus 40 ~~~~spdgk~~y~a~T~--~sR------~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETF--YSR------GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEEE-TTSSEEEEEEEE--EEE------TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE
T ss_pred ceeECCCCCEEEEEEEE--Eec------cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEE
Confidence 377888885 7776664 222 222344566888998754322 2222 2457889999999999999
Q ss_pred EeCC-CCEEEEEEecCCCCCceeEEec--cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh
Q 047259 75 CESW-KFRCRRYWLKGPRQGRLESFIE--HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL 151 (225)
Q Consensus 75 ~~~~-~~~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~ 151 (225)
.+.. ...|..+|++.+ + |.. ..||. -.+--.+..+++.-+...
T Consensus 112 ~N~TPa~SVtVVDl~~~---k---vv~ei~~PGC-~~iyP~~~~~F~~lC~DG--------------------------- 157 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAK---K---VVGEIDTPGC-WLIYPSGNRGFSMLCGDG--------------------------- 157 (342)
T ss_dssp EEESSSEEEEEEETTTT---E---EEEEEEGTSE-EEEEEEETTEEEEEETTS---------------------------
T ss_pred EccCCCCeEEEEECCCC---c---eeeeecCCCE-EEEEecCCCceEEEecCC---------------------------
Confidence 8865 568889998642 1 221 13441 112112222344333331
Q ss_pred hccCCCCcceEEEEECCCCcEEEEEE---CCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCcccccCCC
Q 047259 152 LIPLGNDAGARIVKVDTHGKIIMDFN---DPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTPEAELAPK 222 (225)
Q Consensus 152 ~~~~~~~~~~~V~~~d~~G~~~~~~~---~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~ 222 (225)
.-.-+.+|.+|++..... +++...+ ....+.. .++++|+.++ .+.|..+++.++.+++.++
T Consensus 158 --------sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~-f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 158 --------SLLTVTLDADGKEAQKSTKVFDPDDDPL-FEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp --------CEEEEEETSTSSEEEEEEEESSTTTS-B--S--EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEE
T ss_pred --------ceEEEEECCCCCEeEeeccccCCCCccc-ccccceECCCCeEEEEec-CCEEEEEeccCCcccccCc
Confidence 234477888998864432 2322211 1111222 3578888664 5889999998888776653
No 105
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.73 E-value=0.073 Score=42.35 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=50.2
Q ss_pred EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259 39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS 116 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~ 116 (225)
.|..||.+...+..+ . -...|.|.|+|+|++|.++..+ .+.|..++.+. .+.+..........++++|+|+
T Consensus 84 ~v~lyd~~~~~i~~~-~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr 156 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSF-G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGR 156 (194)
T ss_pred ccEEEcCcccEeEee-c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCC
Confidence 566666642222222 2 2456899999999988887754 45788888753 2222322223467899999999
Q ss_pred EEEEeec
Q 047259 117 FWVALIK 123 (225)
Q Consensus 117 l~v~~~~ 123 (225)
.+++...
T Consensus 157 ~~~ta~t 163 (194)
T PF08662_consen 157 YLATATT 163 (194)
T ss_pred EEEEEEe
Confidence 8887654
No 106
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.68 E-value=0.092 Score=49.02 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=75.7
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEE---EecCC--CCCceeEEeccCCCCCCceE
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRY---WLKGP--RQGRLESFIEHLPGGPDNIN 110 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~---~~~~~--~~~~~~~~~~~~~g~Pd~i~ 110 (225)
..+.++.++.+.++... ........+.|||||+++.+... ++|+.- ..+++ .+...+.+...+...+..+.
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 35566655555444433 22235889999999998866543 577763 32222 12222222222223357788
Q ss_pred ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEE
Q 047259 111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSA 190 (225)
Q Consensus 111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~ 190 (225)
+-.++.|.|...+. ...|++++.||.....+. .+........+
T Consensus 504 W~~~~~L~V~~~~~-----------------------------------~~~v~~v~vDG~~~~~~~--~~n~~~~v~~v 546 (591)
T PRK13616 504 WRTGDSLVVGRSDP-----------------------------------EHPVWYVNLDGSNSDALP--SRNLSAPVVAV 546 (591)
T ss_pred EecCCEEEEEecCC-----------------------------------CCceEEEecCCccccccC--CCCccCceEEE
Confidence 88899988764331 345888988987755432 33333344444
Q ss_pred EEeCCEEEEeeCCCCeEEEEe
Q 047259 191 VEFEDNLYMASIQSKFVGKLP 211 (225)
Q Consensus 191 ~~~~~~Lyv~~~~~~~i~~~~ 211 (225)
+-..+.||+++.. -+..++
T Consensus 547 aa~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 547 AASPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred ecCCceEEEEcCC--ceEEec
Confidence 4445789998644 355554
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.12 Score=45.78 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=89.9
Q ss_pred EEEEEeCCCCeEEEEecCcccc----ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEEC
Q 047259 39 QLLKYDPELEETTVLHEGFYFA----NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLA 112 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~~~~~~p----nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d 112 (225)
.+|.||..+++++.+-.....+ .--.+++|+++|. ..-..+.|..+...++ . ++.. .+|.-.+++++
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G~~G~I~lLhakT~---e---li~s~KieG~v~~~~fs 353 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIA-IAGNNGHIHLLHAKTK---E---LITSFKIEGVVSDFTFS 353 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEE-EcccCceEEeehhhhh---h---hhheeeeccEEeeEEEe
Confidence 5788888777766653222222 3345789988443 3445678888776532 1 2211 45677899999
Q ss_pred CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE
Q 047259 113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV 191 (225)
Q Consensus 113 ~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~ 191 (225)
+||+..++..+ .|.|+++|-. -+.+..+.+ +|. +.+.+.+.
T Consensus 354 Sdsk~l~~~~~------------------------------------~GeV~v~nl~~~~~~~rf~D-~G~-v~gts~~~ 395 (514)
T KOG2055|consen 354 SDSKELLASGG------------------------------------TGEVYVWNLRQNSCLHRFVD-DGS-VHGTSLCI 395 (514)
T ss_pred cCCcEEEEEcC------------------------------------CceEEEEecCCcceEEEEee-cCc-cceeeeee
Confidence 99986666655 4678887765 356666766 454 44444443
Q ss_pred EeCCEEEEeeCCCCeEEEEeCCCcccccCCCC
Q 047259 192 EFEDNLYMASIQSKFVGKLPLNTPEAELAPKA 223 (225)
Q Consensus 192 ~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~~ 223 (225)
--++.++-+....+-|=+|+.+..-+.-+||-
T Consensus 396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred cCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 34556556667788999999988888888763
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.59 E-value=0.17 Score=44.68 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=80.3
Q ss_pred CCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
.+|.|-.||.+++....-..+...| ..|.|+.+| +..++....++|..+|+.. ......|.-.....-..+.+|..
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred CCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh--hcccceeeccccccceeEEEcCC
Confidence 4777777887654432223344444 679999998 4556777778899999863 22333333111112567999999
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEe
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEF 193 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~ 193 (225)
|.+.+.... .-.|..+...- ++.+..+.++-. ...+.+-+.
T Consensus 444 Gt~L~~~g~------------------------------------~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg 485 (506)
T KOG0289|consen 444 GTYLGIAGS------------------------------------DLQVYICKKKTKSWTEIKELADHS--GLSTGVRFG 485 (506)
T ss_pred CCeEEeecc------------------------------------eeEEEEEecccccceeeehhhhcc--cccceeeec
Confidence 987776633 44677777543 344443333221 123444455
Q ss_pred CCEEEEeeCCCCeEEEE
Q 047259 194 EDNLYMASIQSKFVGKL 210 (225)
Q Consensus 194 ~~~Lyv~~~~~~~i~~~ 210 (225)
+..-|+++...+++.++
T Consensus 486 ~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRL 502 (506)
T ss_pred ccceEEeeccchhheEE
Confidence 67778888888888665
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.34 Score=40.97 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=42.8
Q ss_pred ccccceeEEecCCCEEEEEeCCCCEEEEEEe-cCCCCCceeEEecc--CCCCCCceEECCCCCEEEEeec
Q 047259 57 FYFANGVALSKDENFVVVCESWKFRCRRYWL-KGPRQGRLESFIEH--LPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~-~~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
...-+.|.+||||+.+.++... +.++.++. +|. ....|... ....|-..++.|||.+.++...
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 4455899999999988888765 56777764 332 22333321 1235678899999998888766
No 110
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.52 E-value=0.067 Score=49.91 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=86.9
Q ss_pred CCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 34 GKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
+.++.++|-.|.. .-.+..+..+.--.-+.|.|+.. ...+.+....+..++...+ ..+++|.++ .+--..+++.+
T Consensus 513 ~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH-~~~V~al~~Sp 587 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG--NSVRIFTGH-KGPVTALAFSP 587 (707)
T ss_pred CCceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC--cEEEEecCC-CCceEEEEEcC
Confidence 4567899998863 45566667777778899999975 3344455566666666532 357788643 33346899999
Q ss_pred CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEE
Q 047259 114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVE 192 (225)
Q Consensus 114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~ 192 (225)
.|+..++... .+.|...|- .|+.+..+....+. +..+.+
T Consensus 588 ~Gr~LaSg~e------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~t----i~SlsF 627 (707)
T KOG0263|consen 588 CGRYLASGDE------------------------------------DGLIKIWDLANGSLVKQLKGHTGT----IYSLSF 627 (707)
T ss_pred CCceEeeccc------------------------------------CCcEEEEEcCCCcchhhhhcccCc----eeEEEE
Confidence 9887776655 234444443 35655555433332 333444
Q ss_pred -eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259 193 -FEDNLYMASIQSKFVGKLPLNTPEA 217 (225)
Q Consensus 193 -~~~~Lyv~~~~~~~i~~~~~~~~~~ 217 (225)
.+|.+.++.-+.+.|...++.....
T Consensus 628 S~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred ecCCCEEEecCCCCeEEEEEchhhcc
Confidence 3677777777778777776655443
No 111
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.46 E-value=0.11 Score=45.67 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCcEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC-C-C-CceE
Q 047259 35 KPHGQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG-G-P-DNIN 110 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g-~-P-d~i~ 110 (225)
.+..++|.+|..+++.+++.++- ....|..++++.+.||... ...+|+++++++. ... ++.. .|. . . ....
T Consensus 57 dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~--e~~-~vy~-~p~~~~g~gt~v 131 (386)
T PF14583_consen 57 DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL--EER-VVYE-VPDDWKGYGTWV 131 (386)
T ss_dssp TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EE-EEEE---TTEEEEEEEE
T ss_pred CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC--cEE-EEEE-CCccccccccee
Confidence 34678999999999999987653 3344889999999875433 2358999999863 222 2332 221 1 1 2344
Q ss_pred ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCC--CCcc-c-
Q 047259 111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPN--ATYI-S- 185 (225)
Q Consensus 111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~--g~~~-~- 185 (225)
.+++++.++.....+. ...-+..+..+++++.. .+ +..|+++|.+ |+...++.... |.+. +
T Consensus 132 ~n~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~a-----------~p--~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 132 ANSDCTKLVGIEISRE-DWKPLTKWKGFREFYEA-----------RP--HCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp E-TTSSEEEEEEEEGG-G-----SHHHHHHHHHC----------------EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred eCCCccEEEEEEEeeh-hccCccccHHHHHHHhh-----------CC--CceEEEEECCCCceeEEEecCccccCcccCC
Confidence 5788888877654321 11111222334443332 22 6788999876 67665655432 2111 0
Q ss_pred -ceeEEEE-e-------CCEEEEeeCCCCeEEEEeCC
Q 047259 186 -FVTSAVE-F-------EDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 186 -~~t~~~~-~-------~~~Lyv~~~~~~~i~~~~~~ 213 (225)
.++.+.+ + +-+||+.+..+..+..+...
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~ 234 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR 234 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC
Confidence 1222222 1 23788887777766666544
No 112
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.43 E-value=0.018 Score=33.48 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=29.9
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259 67 KDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA 112 (225)
Q Consensus 67 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d 112 (225)
||+++|||++...+.|..++..+. .....+ ..+..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEE-ECCCCCceEEeC
Confidence 678899999999999999998532 221112 134579998875
No 113
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.42 E-value=0.37 Score=45.40 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=68.6
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I 82 (225)
-|++|+.|.|.+.-... .=.|+.|+.++|++.-+..+...| .|+.++|++. +.++-++...|
T Consensus 440 cvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTV 502 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTV 502 (893)
T ss_pred EEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceE
Confidence 46778888877764431 227888888889877777777666 7899999998 77888899998
Q ss_pred EEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeec
Q 047259 83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIK 123 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~ 123 (225)
.++++=. ..+..+++. .....-++++.|+|+ |-|+...
T Consensus 503 RiW~if~-s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 503 RIWDIFS-SSGTVETLE--IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred EEEEeec-cCceeeeEe--eccceeEEEEcCCCCeEEEEEec
Confidence 8888732 123444442 223345677777775 6666554
No 114
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=96.37 E-value=0.018 Score=34.04 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=29.5
Q ss_pred CcEEEEcCCCCCCcchhhhhcccCCCCc-EEEEEeCCCCeEEE-EecCccccceeEEec
Q 047259 11 GSLYFTVSSKKYTPAEYYKDLVEGKPHG-QLLKYDPELEETTV-LHEGFYFANGVALSK 67 (225)
Q Consensus 11 G~iy~td~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~ 67 (225)
|+||.||.+ .. .|.+.+.+....+. +.+++..|+||++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 579999998 33 77777776444444 457799999999975
No 115
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.37 E-value=0.39 Score=41.83 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=70.9
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCC-CCCceEECC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPG-GPDNINLAP 113 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g-~Pd~i~~d~ 113 (225)
..|.++.+|..+|+..-..+ ......++++ ++.||++. .++.|+.++.+++ . ..+.. ...+ .-....+ .
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG---~-~~W~~~~~~~~~~ssp~i-~ 319 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSG---S-ELWKNDELKYRQLTAPAV-V 319 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceEe--CCEEEEEC-CCCeEEEEECCCC---c-EEEccccccCCccccCEE-E
Confidence 36788999987775432222 2233444444 45699886 4679999998642 1 11211 1111 1112233 2
Q ss_pred CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEE
Q 047259 114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE 192 (225)
Q Consensus 114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~ 192 (225)
++.+|+.+. .+.|..+|++ |+++..+..+.+... +..+.
T Consensus 320 g~~l~~~~~-------------------------------------~G~l~~~d~~tG~~~~~~~~~~~~~~---~sp~~ 359 (377)
T TIGR03300 320 GGYLVVGDF-------------------------------------EGYLHWLSREDGSFVARLKTDGSGIA---SPPVV 359 (377)
T ss_pred CCEEEEEeC-------------------------------------CCEEEEEECCCCCEEEEEEcCCCccc---cCCEE
Confidence 457777642 4578888885 999888876443211 22234
Q ss_pred eCCEEEEeeCCCCeEEEE
Q 047259 193 FEDNLYMASIQSKFVGKL 210 (225)
Q Consensus 193 ~~~~Lyv~~~~~~~i~~~ 210 (225)
.+++||+++. ++.|..|
T Consensus 360 ~~~~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 360 VGDGLLVQTR-DGDLYAF 376 (377)
T ss_pred ECCEEEEEeC-CceEEEe
Confidence 5788999875 3556554
No 116
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.23 E-value=0.63 Score=40.30 Aligned_cols=136 Identities=17% Similarity=0.218 Sum_probs=86.5
Q ss_pred cEEEEEeCCCCeEEEEe--cCc-cccce-eEEecCCC--EE-EEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259 38 GQLLKYDPELEETTVLH--EGF-YFANG-VALSKDEN--FV-VVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN 110 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~--~~~-~~pnG-i~~~~dg~--~L-yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~ 110 (225)
..||.||.+ ..+.+- +.. ..|.| +|+++... +| |=..+..+.|+.|+... +.....+- -..+----++
T Consensus 106 e~IyIydI~--~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~-aH~~~lAala 180 (391)
T KOG2110|consen 106 ESIYIYDIK--DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTIN-AHKGPLAALA 180 (391)
T ss_pred ccEEEEecc--cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEE-ecCCceeEEE
Confidence 458888875 334432 222 45665 57777654 33 44445678999998753 22222221 1234456899
Q ss_pred ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEEC--CCCcEEEEEECCCCCccccee
Q 047259 111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVD--THGKIIMDFNDPNATYISFVT 188 (225)
Q Consensus 111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d--~~G~~~~~~~~p~g~~~~~~t 188 (225)
++++|.+..+... .|.|+|+= ++|+.+..++ .|...-.+.
T Consensus 181 fs~~G~llATASe------------------------------------KGTVIRVf~v~~G~kl~eFR--RG~~~~~Iy 222 (391)
T KOG2110|consen 181 FSPDGTLLATASE------------------------------------KGTVIRVFSVPEGQKLYEFR--RGTYPVSIY 222 (391)
T ss_pred ECCCCCEEEEecc------------------------------------CceEEEEEEcCCccEeeeee--CCceeeEEE
Confidence 9999999888776 56777743 6798877776 465333555
Q ss_pred EEEEe-CCEEEEeeCCCCeEEEEeCCCcc
Q 047259 189 SAVEF-EDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 189 ~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
.++++ ++.+.-++.....|-+|++....
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 56664 56666667778888888887654
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.3 Score=41.63 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=43.7
Q ss_pred CCCCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 34 GKPHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
+-.+|+|..||..+..+..+.+....| ..++||+||+ ..++.+..+.|..+|+..
T Consensus 41 Gc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 41 GCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred eccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccC
Confidence 455899999998877666666665555 6899999998 668888889999999864
No 118
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=96.20 E-value=0.018 Score=34.04 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=31.6
Q ss_pred EEEEEeCCCC-EEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 71 FVVVCESWKF-RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 71 ~Lyv~~~~~~-~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
.||++|...+ +|.+.+++|. ..++++...-..|.||++|+
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence 5999999999 9999999873 35555554445799999984
No 119
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.27 Score=39.65 Aligned_cols=118 Identities=11% Similarity=0.220 Sum_probs=69.2
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEeccCC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChh
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIEHLP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPD 137 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~ 137 (225)
-.|-.+..|++.|+.++- +..++.-++++- .....++-.++.| +.-+-+..- +|.+|.-.+.
T Consensus 131 GeGWgLt~d~~~LimsdG-satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~-------------- 194 (262)
T COG3823 131 GEGWGLTSDDKNLIMSDG-SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ-------------- 194 (262)
T ss_pred CcceeeecCCcceEeeCC-ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee--------------
Confidence 467777777777877764 445555555541 1222222222222 122333333 4777776666
Q ss_pred HHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC--------CCCcccceeEEEE--eCCEEEEeeCCCCe
Q 047259 138 KWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP--------NATYISFVTSAVE--FEDNLYMASIQSKF 206 (225)
Q Consensus 138 ~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p--------~g~~~~~~t~~~~--~~~~Lyv~~~~~~~ 206 (225)
..+|.|++|+ |+++..+... ++..-.-..+++. ..+++|++.-.-+.
T Consensus 195 ----------------------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~ 252 (262)
T COG3823 195 ----------------------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPL 252 (262)
T ss_pred ----------------------ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCce
Confidence 4589999997 8998887531 1211112333443 46799999998888
Q ss_pred EEEEeCCCc
Q 047259 207 VGKLPLNTP 215 (225)
Q Consensus 207 i~~~~~~~~ 215 (225)
+..+++.+.
T Consensus 253 lfEVk~~~a 261 (262)
T COG3823 253 LFEVKLDEA 261 (262)
T ss_pred eEEEEecCC
Confidence 888887653
No 120
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.15 E-value=0.29 Score=43.90 Aligned_cols=102 Identities=17% Similarity=0.056 Sum_probs=67.0
Q ss_pred cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--EEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259 38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF--RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG 115 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G 115 (225)
.++|+++.++++...+++-...-...+|+|||+.|.++...++ .|+.+++++.. ...+. ...+.-.+-.+.+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~Lt-~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRLT-NGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceecc-cCCccccCccCCCCC
Confidence 6799999887877777665555566999999999987776554 67777776532 22222 233333356677888
Q ss_pred CE--EEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC
Q 047259 116 SF--WVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND 178 (225)
Q Consensus 116 ~l--~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~ 178 (225)
+- |+++-+. ...|++++++|+-...+..
T Consensus 294 ~~ivf~Sdr~G-----------------------------------~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 294 SKIVFTSDRGG-----------------------------------RPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CEEEEEeCCCC-----------------------------------CcceEEECCCCCceeEeec
Confidence 73 3333331 3489999999876555544
No 121
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.95 E-value=0.034 Score=32.19 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEe
Q 047259 9 SDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALS 66 (225)
Q Consensus 9 ~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~ 66 (225)
++| +||+++.. .+.|..+|..+++..........|.+|+++
T Consensus 1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 345 59999876 678999998777766556667889999875
No 122
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.93 E-value=0.43 Score=41.69 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=75.3
Q ss_pred CCcEEEEEeCCCCeEE--EEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC--CCCceE
Q 047259 36 PHGQLLKYDPELEETT--VLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG--GPDNIN 110 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~--~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g--~Pd~i~ 110 (225)
..|.|+.+|+++++.. ....+ ....++-.+..||+ +|+..... .++.++.+++ +. ++....++ .-.+-+
T Consensus 76 ~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-~~y~ld~~~G---~~-~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 76 RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-KLYALDASTG---TL-VWSRNVGGSPYYASPP 149 (370)
T ss_pred CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccc-eEEEEECCCC---cE-EEEEecCCCeEEecCc
Confidence 3678999998877632 22222 23445544445887 99988765 8888988421 11 22212222 111224
Q ss_pred ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeE
Q 047259 111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTS 189 (225)
Q Consensus 111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~ 189 (225)
+-.+|.+|+.. . .+.+..++++ |+..-.+..+.+.-......
T Consensus 150 v~~~~~v~~~s-~------------------------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~ 192 (370)
T COG1520 150 VVGDGTVYVGT-D------------------------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGS 192 (370)
T ss_pred EEcCcEEEEec-C------------------------------------CCeEEEEEccCCcEEEEEecCCccccccccC
Confidence 44567777765 2 4578888887 88876665533100111111
Q ss_pred EEEeCCEEEEeeCC-CCeEEEEeC
Q 047259 190 AVEFEDNLYMASIQ-SKFVGKLPL 212 (225)
Q Consensus 190 ~~~~~~~Lyv~~~~-~~~i~~~~~ 212 (225)
....++.+|++... +.++..+++
T Consensus 193 ~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 193 PAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred ceeecceEEEecCCCcceEEEEEc
Confidence 12567888888664 446777776
No 123
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.92 E-value=0.8 Score=37.90 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCcEEEEEeCCCCeE--EEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEec--cCCCCCCce
Q 047259 35 KPHGQLLKYDPELEET--TVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIE--HLPGGPDNI 109 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~--~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~--~~~g~Pd~i 109 (225)
..+|+|..+|..+... +++.+....-..+++.|||+ ..++...++..+..++-+. .....+.... .-.+.--.+
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 3468888899765533 33456666778999999998 5566667778888877532 1222211111 112334567
Q ss_pred EECCCCCEEEEeec
Q 047259 110 NLAPDGSFWVALIK 123 (225)
Q Consensus 110 ~~d~~G~l~v~~~~ 123 (225)
.+.||+.+.++...
T Consensus 222 ~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 222 LLSPDVKYLATCSS 235 (311)
T ss_pred EECCCCcEEEeecC
Confidence 88888888888766
No 124
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.90 E-value=0.42 Score=42.88 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=61.8
Q ss_pred CCCCc-EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259 34 GKPHG-QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA 112 (225)
Q Consensus 34 ~~~~g-~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d 112 (225)
+...| .|..||.++++++....++..-..+.+++||+.+.+++ .+..||.++++. ++++..-....++--++++.
T Consensus 377 gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididn---gnv~~idkS~~~lItdf~~~ 452 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN---GNVRLIDKSEYGLITDFDWH 452 (668)
T ss_pred eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecC---CCeeEecccccceeEEEEEc
Confidence 45566 67888888888899889999999999999999776665 457999999985 34544322234556677777
Q ss_pred CCCCEEEEee
Q 047259 113 PDGSFWVALI 122 (225)
Q Consensus 113 ~~G~l~v~~~ 122 (225)
+++++..=.+
T Consensus 453 ~nsr~iAYaf 462 (668)
T COG4946 453 PNSRWIAYAF 462 (668)
T ss_pred CCceeEEEec
Confidence 7766544333
No 125
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.63 E-value=0.28 Score=41.70 Aligned_cols=134 Identities=12% Similarity=0.029 Sum_probs=75.2
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC-C--CCc-eeEEecc-----CCCCCCceEECCCCCEEEEeecCC
Q 047259 55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP-R--QGR-LESFIEH-----LPGGPDNINLAPDGSFWVALIKMN 125 (225)
Q Consensus 55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~--~~~-~~~~~~~-----~~g~Pd~i~~d~~G~l~v~~~~~~ 125 (225)
..+..|-||+++|.+ .+||++.+++....|+.+.. . ... ..+-+.. .++.|.|+.+.....+-|+.....
T Consensus 20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 457889999999987 59999999999999987621 1 111 1121111 134689999987655545543311
Q ss_pred chhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEE------EEEEC-CCCCcccceeEEE-EeCCEE
Q 047259 126 QTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKII------MDFND-PNATYISFVTSAV-EFEDNL 197 (225)
Q Consensus 126 ~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~------~~~~~-p~g~~~~~~t~~~-~~~~~L 197 (225)
. .-.||. ..+ .+.|....|.-... .++.. ..+.+.++...+. ..+.+|
T Consensus 99 ~-~a~Fif---------------------~tE--dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L 154 (336)
T TIGR03118 99 G-PSRFLF---------------------VTE--DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL 154 (336)
T ss_pred c-ceeEEE---------------------EeC--CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE
Confidence 0 000100 011 44554444431111 12221 2344343333222 136899
Q ss_pred EEeeCCCCeEEEEeCC
Q 047259 198 YMASIQSKFVGKLPLN 213 (225)
Q Consensus 198 yv~~~~~~~i~~~~~~ 213 (225)
|.+++.+++|-+|+-.
T Consensus 155 YaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 155 YAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeccCCCceEEecCc
Confidence 9999999999999543
No 126
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.63 Score=37.58 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=50.2
Q ss_pred CcEEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 37 HGQLLKYDPELEETTV---LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
...|.++|..+|+... +..+-.+..||.-..| .+|.-....+.-++|+.++ ......|. .+|.-=|++.|.
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd--~~y~LTw~egvaf~~d~~t--~~~lg~~~--y~GeGWgLt~d~ 140 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD--YFYQLTWKEGVAFKYDADT--LEELGRFS--YEGEGWGLTSDD 140 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccc--eEEEEEeccceeEEEChHH--hhhhcccc--cCCcceeeecCC
Confidence 5678888887665432 2224457789888754 7999999888888888764 11221222 223223666665
Q ss_pred CCCEEEEeec
Q 047259 114 DGSFWVALIK 123 (225)
Q Consensus 114 ~G~l~v~~~~ 123 (225)
+ +||.++..
T Consensus 141 ~-~LimsdGs 149 (262)
T COG3823 141 K-NLIMSDGS 149 (262)
T ss_pred c-ceEeeCCc
Confidence 4 58888765
No 127
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.57 E-value=1.6 Score=40.93 Aligned_cols=72 Identities=19% Similarity=0.136 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-----------CCEEEEEEecCCCCCceeEEeccCCCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW-----------KFRCRRYWLKGPRQGRLESFIEHLPGG 105 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~g~ 105 (225)
..+||.++.. +..+.+..+.. -....|+|||+.||+...+ .++|+.+++++. ..+. ...+.
T Consensus 378 ~s~Lwv~~~g-g~~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---e~~~---~~~g~ 449 (591)
T PRK13616 378 ASSLWVGPLG-GVAVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---AVAS---RVPGP 449 (591)
T ss_pred ceEEEEEeCC-CcceeeecCCC-CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---hhhh---ccCCC
Confidence 5678888764 44455544432 5678999998878776432 234444444321 1111 12345
Q ss_pred CCceEECCCCC
Q 047259 106 PDNINLAPDGS 116 (225)
Q Consensus 106 Pd~i~~d~~G~ 116 (225)
...+.+.+||.
T Consensus 450 Issl~wSpDG~ 460 (591)
T PRK13616 450 ISELQLSRDGV 460 (591)
T ss_pred cCeEEECCCCC
Confidence 77888999986
No 128
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.50 E-value=1.6 Score=38.50 Aligned_cols=143 Identities=15% Similarity=0.059 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC----------CCEEEEEEecCCCCCceeEEeccCCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA--NGVALSKDENFVVVCESW----------KFRCRRYWLKGPRQGRLESFIEHLPG 104 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p--nGi~~~~dg~~Lyv~~~~----------~~~I~~~~~~~~~~~~~~~~~~~~~g 104 (225)
.-.|+.+|..+|+.. .+.+..+ .+++|.+|++.+|.+... ..+|+++.+.+.......+|-...+.
T Consensus 149 ~~~l~v~Dl~tg~~l--~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 149 WYTLRVFDLETGKFL--PDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEEETTTTEEE--EEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred eEEEEEEECCCCcCc--CCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence 346888998877533 2333333 349999999888777643 44688888754322223344321111
Q ss_pred C-CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC------cEEEEEE
Q 047259 105 G-PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG------KIIMDFN 177 (225)
Q Consensus 105 ~-Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G------~~~~~~~ 177 (225)
. --++..+++|++.+....... +...|+.++.+. +......
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~~~--------------------------------~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSSGT--------------------------------SESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEESSS--------------------------------SEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cEEEEEEecCcccEEEEEEEccc--------------------------------cCCeEEEEeccccCCCcCCcEEEeC
Confidence 2 236788899986554433211 036777777653 3443333
Q ss_pred CCCCCcccceeEEEEeCCEEEEee---CCCCeEEEEeCCCccc
Q 047259 178 DPNATYISFVTSAVEFEDNLYMAS---IQSKFVGKLPLNTPEA 217 (225)
Q Consensus 178 ~p~g~~~~~~t~~~~~~~~Lyv~~---~~~~~i~~~~~~~~~~ 217 (225)
.-++. ...+...++.+|+.+ ....+|.++++.....
T Consensus 275 ~~~~~----~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 275 REDGV----EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp SSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred CCCce----EEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 22221 223334588888855 4457888888887763
No 129
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.40 E-value=1.3 Score=38.64 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCeEEE--EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTV--LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~--~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.|.|+.+|..+|+..= -... ....+++.+ ++.+|+... ++.|+.++.++
T Consensus 74 ~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v~--~~~v~v~~~-~g~l~ald~~t 124 (377)
T TIGR03300 74 DGTVVALDAETGKRLWRVDLDE-RLSGGVGAD--GGLVFVGTE-KGEVIALDAED 124 (377)
T ss_pred CCeEEEEEccCCcEeeeecCCC-CcccceEEc--CCEEEEEcC-CCEEEEEECCC
Confidence 5789999987776431 1111 222345554 456888764 57999999854
No 130
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.31 E-value=1.8 Score=37.74 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=79.4
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCC------CCCcee--EEecc-----------CCCCCCceEECCCCCEEE
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGP------RQGRLE--SFIEH-----------LPGGPDNINLAPDGSFWV 119 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~~~--~~~~~-----------~~g~Pd~i~~d~~G~l~v 119 (225)
.-.+-+|+|+|++|.++-++.-+|++..-++. ..+.++ ..++- ..|.+.-|++|+.|...+
T Consensus 282 rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 67788999999999999999999999876532 011112 22220 124578899999999888
Q ss_pred EeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEE--C-CCCCcccceeEE-EEeCC
Q 047259 120 ALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN--D-PNATYISFVTSA-VEFED 195 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~--~-p~g~~~~~~t~~-~~~~~ 195 (225)
+.+...+-+..+ ..-|.++|..-.....+. . -.|.....++.- ...++
T Consensus 362 v~fKg~~~v~~~----------------------------k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 362 VIFKGQSFVLLC----------------------------KLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred EEEcCCchhhhh----------------------------hhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 887743211110 223455554433222222 1 112211112211 12468
Q ss_pred EEEEeeCCCCeEEEEeCCCccccc
Q 047259 196 NLYMASIQSKFVGKLPLNTPEAEL 219 (225)
Q Consensus 196 ~Lyv~~~~~~~i~~~~~~~~~~~~ 219 (225)
.|....|..+++.+|++.--..++
T Consensus 414 ~lLsiaWsTGriq~ypl~f~~~~~ 437 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLTFQCFRD 437 (445)
T ss_pred cEEEEEeccCceEeeeeEEEeecc
Confidence 888889999999999987665544
No 131
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.16 E-value=0.85 Score=44.67 Aligned_cols=157 Identities=11% Similarity=0.154 Sum_probs=101.5
Q ss_pred CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-C
Q 047259 2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW-K 79 (225)
Q Consensus 2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~-~ 79 (225)
+.+++++- .+++|+||.+.. ...+..++.. .+..++...+..|..++++|-..++|+++++ .
T Consensus 482 ~~~lavD~~~~~~y~tDe~~~---------------~i~v~~~~g~-~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~ 545 (877)
T KOG1215|consen 482 PEGLAVDWIGDNIYWTDEGNC---------------LIEVADLDGS-SRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP 545 (877)
T ss_pred cCcEEEEeccCCceecccCCc---------------eeEEEEccCC-ceeEEEecCCCCccceeeccccCeeEEecCCCC
Confidence 45677777 347999988721 2333444432 2223334556899999999999999999998 4
Q ss_pred CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259 80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND 158 (225)
Q Consensus 80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~ 158 (225)
.+|.|-.+++. .........-..|+|++.|- +.++|.++...
T Consensus 546 ~~i~ra~~dg~---~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~---------------------------------- 588 (877)
T KOG1215|consen 546 PRIERASLDGS---ERAVLVTNGILWPNGLTIDYETDRLYWADAKL---------------------------------- 588 (877)
T ss_pred chhhhhcCCCC---CceEEEeCCccCCCcceEEeecceeEEEcccC----------------------------------
Confidence 46777777652 23333322235799999996 45788888662
Q ss_pred cceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259 159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
...+.+.+-+|+..+ +..... .+.+-.+....+++|-+++....+-+......
T Consensus 589 -~~~i~~~~~~g~~r~-~~~~~~--~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~ 641 (877)
T KOG1215|consen 589 -DYTIESANMDGQNRR-VVDSED--LPHPFGLSVFEDYIYWTDWSNRAISRAEKHKG 641 (877)
T ss_pred -CcceeeeecCCCceE-Eecccc--CCCceEEEEecceeEEeeccccceEeeecccC
Confidence 336788888887765 322121 33445556678899999988886666555444
No 132
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.07 E-value=0.17 Score=45.37 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK--FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
..-.||.+|..++....+.+....-..-.|+|||+.++++.... -+|+++++++. ..+.... ..+....-.+.+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~---~~~riT~-~~~~~~~p~~Sp 335 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS---QVTRLTF-SGGGNSNPVWSP 335 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC---ceeEeec-cCCCCcCccCCC
Confidence 35578999988676666666666666889999999886655433 37888888764 2222221 222334677788
Q ss_pred CCCEEEEee
Q 047259 114 DGSFWVALI 122 (225)
Q Consensus 114 ~G~l~v~~~ 122 (225)
||+..+-..
T Consensus 336 dG~~i~~~~ 344 (425)
T COG0823 336 DGDKIVFES 344 (425)
T ss_pred CCCEEEEEe
Confidence 888766665
No 133
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.06 E-value=2.1 Score=37.70 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=66.2
Q ss_pred CcEEEEEeCCCCeEE--EEecC---c-------cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC
Q 047259 37 HGQLLKYDPELEETT--VLHEG---F-------YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG 104 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~--~~~~~---~-------~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g 104 (225)
.|.|+.+|.++|+.. .-... . ....+++.+. +.+|+.. ..+.|+.++.+++.. .+....++
T Consensus 78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~v~v~~-~~g~l~ald~~tG~~----~W~~~~~~ 150 (394)
T PRK11138 78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG--GKVYIGS-EKGQVYALNAEDGEV----AWQTKVAG 150 (394)
T ss_pred CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC--CEEEEEc-CCCEEEEEECCCCCC----cccccCCC
Confidence 467888887767532 11111 0 1113455543 4588876 457899999864211 12111222
Q ss_pred CC-CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCC
Q 047259 105 GP-DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNAT 182 (225)
Q Consensus 105 ~P-d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~ 182 (225)
.. ....+. +|.+|+... .+.+..+|+ +|+++-.+......
T Consensus 151 ~~~ssP~v~-~~~v~v~~~-------------------------------------~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 151 EALSRPVVS-DGLVLVHTS-------------------------------------NGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ceecCCEEE-CCEEEEECC-------------------------------------CCEEEEEEccCCCEeeeecCCCCc
Confidence 11 111222 467777432 357888887 48887776542110
Q ss_pred c-ccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259 183 Y-ISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 183 ~-~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
. ....+.-+..++.+|++.. .+.+..+++.+
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~-~g~v~a~d~~~ 224 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGD-NGRVSAVLMEQ 224 (394)
T ss_pred ccccCCCCCEEECCEEEEEcC-CCEEEEEEccC
Confidence 0 0011111234667777653 45666665543
No 134
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.03 E-value=0.27 Score=43.88 Aligned_cols=136 Identities=12% Similarity=0.126 Sum_probs=88.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec--cCCCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE--HLPGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d~~ 114 (225)
...|-.+|.++|++..-..-...|+-+-+.||+.-+|++-..+.+|..+|+..+ . +..+ ..-+.-..|.+-++
T Consensus 279 D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---k--vvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---K--VVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---H--HHHHHHhhhhheeeeEEccC
Confidence 567778898899888777777889999999999668999999999999999742 1 1111 12234577888888
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeC
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFE 194 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~ 194 (225)
|+-+++..... .-+|+..+. +..+..+..+.- ..-+......+
T Consensus 354 g~rFissSDdk----------------------------------s~riWe~~~-~v~ik~i~~~~~--hsmP~~~~~P~ 396 (503)
T KOG0282|consen 354 GRRFISSSDDK----------------------------------SVRIWENRI-PVPIKNIADPEM--HTMPCLTLHPN 396 (503)
T ss_pred CceEeeeccCc----------------------------------cEEEEEcCC-Cccchhhcchhh--ccCcceecCCC
Confidence 98888877621 223443331 222233333221 22233233346
Q ss_pred CEEEEeeCCCCeEEEEeCCC
Q 047259 195 DNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 195 ~~Lyv~~~~~~~i~~~~~~~ 214 (225)
+..+.+....++|+.|....
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred CCeehhhccCceEEEEeccc
Confidence 67778888888888887543
No 135
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.03 E-value=1.1 Score=39.41 Aligned_cols=84 Identities=8% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec---cCCCCCCceE
Q 047259 34 GKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE---HLPGGPDNIN 110 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~~g~Pd~i~ 110 (225)
..+...|..++..+|+.-+....-..-..+.|+-||. ++++.....+|..+++..+ . +..+ +.+..|....
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~---~--~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG---T--VVSEGVAHEGAKPARAI 223 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC---c--EeeecccccCCCcceeE
Confidence 3556678888887776555445445567899999997 8899999999999998642 1 1221 2333566667
Q ss_pred ECCCCCEEEEeec
Q 047259 111 LAPDGSFWVALIK 123 (225)
Q Consensus 111 ~d~~G~l~v~~~~ 123 (225)
+-.+|.+..+.+.
T Consensus 224 fl~~g~i~tTGfs 236 (472)
T KOG0303|consen 224 FLASGKIFTTGFS 236 (472)
T ss_pred EeccCceeeeccc
Confidence 7778887777776
No 136
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.03 E-value=0.26 Score=39.20 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=40.7
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCES 77 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~ 77 (225)
.|.|...|+|++.++-.. +...|.|..||..+.+ .+. ........++|||||+++..+.+
T Consensus 103 ~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~--~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKK--KISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCE--EeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 467888899887666432 1236888899986433 332 23345789999999997766654
No 137
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.99 E-value=0.12 Score=46.11 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=36.7
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCC--ceeEEecc--------------CCCCCCceEECCCC-CEEEE
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQG--RLESFIEH--------------LPGGPDNINLAPDG-SFWVA 120 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~~--------------~~g~Pd~i~~d~~G-~l~v~ 120 (225)
..+..|.+|.|.++|||+.+..+.|++||+.+.... .-++++.+ +.|.|.=+.+..|| +|||+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 346889999999999999999999999999753111 11233321 22457888999999 59999
Q ss_pred eecCCc
Q 047259 121 LIKMNQ 126 (225)
Q Consensus 121 ~~~~~~ 126 (225)
..-...
T Consensus 392 nSLys~ 397 (461)
T PF05694_consen 392 NSLYSA 397 (461)
T ss_dssp ----HH
T ss_pred eecccc
Confidence 877543
No 138
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.73 E-value=1.3 Score=40.83 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=27.1
Q ss_pred ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC
Q 047259 160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ 203 (225)
Q Consensus 160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~ 203 (225)
.+.+..+|.+ |+++-.+..+.+- ...+... ..+|++||....
T Consensus 481 ~G~l~a~D~~TGe~lw~~~~g~~~-~a~P~ty-~~~G~qYv~~~~ 523 (527)
T TIGR03075 481 EGYFKAFDAKTGEELWKFKTGSGI-VGPPVTY-EQDGKQYVAVLS 523 (527)
T ss_pred CCeEEEEECCCCCEeEEEeCCCCc-eecCEEE-EeCCEEEEEEEe
Confidence 5678888875 9998888875332 2222221 358999998643
No 139
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.70 E-value=0.41 Score=46.36 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=66.1
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
|+..+|++.+.++.+- .+.|..|+..+-+... +-.....+-|+.|||=|+ -+-+.+.++.|
T Consensus 134 Dv~Wsp~~~~lvS~s~-----------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrti 195 (942)
T KOG0973|consen 134 DVNWSPDDSLLVSVSL-----------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTL 195 (942)
T ss_pred eeccCCCccEEEEecc-----------------cceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCCceE
Confidence 6777888877777665 6789999987554333 345567899999999998 45666666666
Q ss_pred EEEEecCCCCCce--eEEeccCCC--CCCceEECCCCCEEEEeecCC
Q 047259 83 RRYWLKGPRQGRL--ESFIEHLPG--GPDNINLAPDGSFWVALIKMN 125 (225)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~~~~g--~Pd~i~~d~~G~l~v~~~~~~ 125 (225)
..++......... +.|- ..++ +=..+.+.|||...++.++.+
T Consensus 196 kvwrt~dw~i~k~It~pf~-~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 196 KVWRTSDWGIEKSITKPFE-ESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred EEEEcccceeeEeeccchh-hCCCcceeeecccCCCcCeecchhhcc
Confidence 6665433111110 1111 1222 235677889999998888754
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.51 E-value=3 Score=37.38 Aligned_cols=85 Identities=9% Similarity=0.070 Sum_probs=46.8
Q ss_pred CCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
++-+||.+|.+....-.-+.-..+| .-.+|.|+|....++.....-++.||+......+.........-.-..+.+.++
T Consensus 235 ~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 235 GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD 314 (514)
T ss_pred CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC
Confidence 4557888886533211111112344 457888999866666666778899999753222222111111112357788888
Q ss_pred CCEEEE
Q 047259 115 GSFWVA 120 (225)
Q Consensus 115 G~l~v~ 120 (225)
+++.+.
T Consensus 315 ~~fia~ 320 (514)
T KOG2055|consen 315 SNFIAI 320 (514)
T ss_pred CCeEEE
Confidence 884443
No 141
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.47 E-value=0.34 Score=44.43 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=57.7
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-Cc-cccceeEEecCCCEEEEEeCCCCE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GF-YFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~-~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
.+..+.+|++|+...- -+++||..+++.-.+.. .. .--|-+..+-+|+ |||... .-
T Consensus 169 aLv~D~~g~lWvgT~d-------------------GL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd--qG 226 (671)
T COG3292 169 ALVFDANGRLWVGTPD-------------------GLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD--QG 226 (671)
T ss_pred eeeeeccCcEEEecCC-------------------cceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec--cc
Confidence 3566777888887553 35788876665444332 22 3456778888876 888875 46
Q ss_pred EEEEEecCCCCCceeEEeccCCCCCC----ceEECCCCCEEEEeec
Q 047259 82 CRRYWLKGPRQGRLESFIEHLPGGPD----NINLAPDGSFWVALIK 123 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~~~g~Pd----~i~~d~~G~l~v~~~~ 123 (225)
|++++..|..... ..+..|+ -+.-|++|++|++.-.
T Consensus 227 v~~~e~~G~~~sn------~~~~lp~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 227 VYLQEAEGWRASN------WGPMLPSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred eEEEchhhccccc------cCCCCcchheeeeecccCCCEEEeecc
Confidence 7888776531111 1233444 3567889999998754
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.41 E-value=2.9 Score=35.77 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=20.9
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
..+.-+.|+|.|.+.+|.-+ ++|-.|.++
T Consensus 169 ~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 169 NKATLVSWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred CcceeeEEcCCCCEEEEEec--cEEEEEecc
Confidence 34556999999987777654 577777665
No 143
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.35 E-value=0.11 Score=46.33 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEEEe----cC---------------cccc
Q 047259 2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTVLH----EG---------------FYFA 60 (225)
Q Consensus 2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~----~~---------------~~~p 60 (225)
+-|+.++-|++ |||++.. +|.|-.||..+ ...+++. .+ ...|
T Consensus 314 itDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp ---EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred eEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 46888999886 9999887 67777777532 2222211 11 1368
Q ss_pred ceeEEecCCCEEEEEeC
Q 047259 61 NGVALSKDENFVVVCES 77 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~ 77 (225)
+-|.+|-||++|||+.+
T Consensus 377 qMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTSSEEEEE--
T ss_pred CeEEEccCCeEEEEEee
Confidence 99999999999999986
No 144
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.32 E-value=1.1 Score=38.85 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=58.8
Q ss_pred EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEE
Q 047259 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCR 83 (225)
Q Consensus 5 v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~ 83 (225)
|...+||.+++|-+. ....|..+|++++....+. -++..-.-+-|||||+.||.+.. .++.
T Consensus 201 mqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~--davf 262 (445)
T KOG2139|consen 201 MQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC--DAVF 262 (445)
T ss_pred EEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc--ccee
Confidence 445556666666543 2567888888877766655 45566667899999996665554 2556
Q ss_pred EEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeec
Q 047259 84 RYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIK 123 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~ 123 (225)
|+.-... .-..+.+. ..+|.-.+-+.++.|+ |..+..+
T Consensus 263 rlw~e~q-~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 263 RLWQENQ-SWTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred eeehhcc-cceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 6552211 11122232 2445667788888886 3334333
No 145
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=94.31 E-value=2.9 Score=35.42 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC-CCCCCceEECCC
Q 047259 37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL-PGGPDNINLAPD 114 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~-~g~Pd~i~~d~~ 114 (225)
...-..+|..++...+.. ....--|.+.|.|+|. -|++-+.++....||+..+ -+..+|.... -..-..+++...
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEccc
Confidence 445566676656555544 4456789999999996 8899999999999999742 2333443211 123468899999
Q ss_pred CCEEEEeec
Q 047259 115 GSFWVALIK 123 (225)
Q Consensus 115 G~l~v~~~~ 123 (225)
|+|..+...
T Consensus 285 GRlLfagy~ 293 (343)
T KOG0286|consen 285 GRLLFAGYD 293 (343)
T ss_pred ccEEEeeec
Confidence 999998765
No 146
>PRK10115 protease 2; Provisional
Probab=94.28 E-value=5.2 Score=38.23 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeC-----CCCEEEEEEecCC
Q 047259 37 HGQLLKYDPELEETT-VLHEGFYFANGVALSKDENFVVVCES-----WKFRCRRYWLKGP 90 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~-~~~~~~~~pnGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~~ 90 (225)
.-.|+.+|..+|+.. ....+.. .+++|++|++.||++.. ....|+++++.++
T Consensus 152 ~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 345777777666411 1112222 56999999998877643 2368889888653
No 147
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=94.17 E-value=4.4 Score=36.95 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 36 PHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
-.|.|..|+..+|....+. ..-..-.+++.+..+. | ++-...+.|.++++.+.......++ .++..|-++++.+
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~-~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-L-FTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKGLAVLS 415 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCc-E-EEEecCCeEEEEecccCccccccee--ecCCCceeEEEcC
Confidence 3789999997766655543 2234667888887554 5 4555678999998865322222221 2455799999999
Q ss_pred CCCEEEEeec
Q 047259 114 DGSFWVALIK 123 (225)
Q Consensus 114 ~G~l~v~~~~ 123 (225)
+|.+-+....
T Consensus 416 d~~~avv~~~ 425 (603)
T KOG0318|consen 416 DGGTAVVACI 425 (603)
T ss_pred CCCEEEEEec
Confidence 9865444433
No 148
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=3.6 Score=34.96 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=93.7
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-E-ecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-L-HEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
++...|+-+-.|+.... ...|..++.+ |++-. + .+++.-|.+|.+-.+|+ .-+++...++
T Consensus 90 ~LTynp~~rtLFav~n~----------------p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~ 151 (316)
T COG3204 90 SLTYNPDTRTLFAVTNK----------------PAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRA 151 (316)
T ss_pred ceeeCCCcceEEEecCC----------------CceEEEEecC-CceEEEecccccCChhHeEEecCCE-EEEEehhcce
Confidence 56677776544444431 3467777775 55433 2 36788899999999886 6677778899
Q ss_pred EEEEEecCC-C---CCceeEEeccCCC---CCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259 82 CRRYWLKGP-R---QGRLESFIEHLPG---GPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI 153 (225)
Q Consensus 82 I~~~~~~~~-~---~~~~~~~~~~~~g---~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~ 153 (225)
++.+.++.. . .....+-.+.... .=.|++.|+. +++|++--..
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------------------- 202 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------------------- 202 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-----------------------------
Confidence 999888632 0 1111111111111 2368999986 4688876431
Q ss_pred cCCCCcceEEEEECCC--CcEEEEEECCCCC---cccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259 154 PLGNDAGARIVKVDTH--GKIIMDFNDPNAT---YISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 154 ~~~~~~~~~V~~~d~~--G~~~~~~~~p~g~---~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
+..|..++.. .-.+....+|... .+...|++..+ .+.|+|=+..+..+..+++.++.
T Consensus 203 ------P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 203 ------PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ------CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 3355555421 1111111222111 13345555554 58888888888888888888774
No 149
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.83 E-value=2.4 Score=38.69 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=28.7
Q ss_pred ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCC
Q 047259 160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQS 204 (225)
Q Consensus 160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~ 204 (225)
.+.+..+|.+ |+++-.++.+.+- ...+. +...++++||+....
T Consensus 415 dG~l~ald~~tG~~lW~~~~~~~~-~a~P~-~~~~~g~~yv~~~~g 458 (488)
T cd00216 415 DGYFRAFDATTGKELWKFRTPSGI-QATPM-TYEVNGKQYVGVMVG 458 (488)
T ss_pred CCeEEEEECCCCceeeEEECCCCc-eEcCE-EEEeCCEEEEEEEec
Confidence 4678889975 9998888875432 22222 124588999998655
No 150
>PHA02713 hypothetical protein; Provisional
Probab=93.66 E-value=4 Score=37.91 Aligned_cols=137 Identities=9% Similarity=0.074 Sum_probs=72.0
Q ss_pred CcEEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCC-----------------------CCEEEEEEecCC
Q 047259 37 HGQLLKYDPELEETTVLHEG---FYFANGVALSKDENFVVVCESW-----------------------KFRCRRYWLKGP 90 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~~Lyv~~~~-----------------------~~~I~~~~~~~~ 90 (225)
...+.+||+.+++|+.+..- .......++ +| .|||.--. .+.+.+|++..+
T Consensus 366 ~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td 442 (557)
T PHA02713 366 ERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN 442 (557)
T ss_pred CceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC
Confidence 34689999988888875431 112222333 34 59986422 246888988653
Q ss_pred CCCceeEEeccCCCC-CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC
Q 047259 91 RQGRLESFIEHLPGG-PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~g~-Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~ 169 (225)
.++......... .-+++ .-+|.|||........ . ....|.++||+
T Consensus 443 ---~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~----------------------------~--~~~~ve~Ydp~ 488 (557)
T PHA02713 443 ---IWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEK----------------------------N--VKTCIFRYNTN 488 (557)
T ss_pred ---eEeecCCCCcccccCcEE-EECCEEEEEeCCCCCC----------------------------c--cceeEEEecCC
Confidence 333322211111 11222 3357999986531100 0 02467899998
Q ss_pred C--cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCC--eEEEEeCC
Q 047259 170 G--KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSK--FVGKLPLN 213 (225)
Q Consensus 170 G--~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~--~i~~~~~~ 213 (225)
. ++...-..|... ..-.++..+++||+..=..+ .+-+|+..
T Consensus 489 ~~~~W~~~~~m~~~r---~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 489 TYNGWELITTTESRL---SALHTILHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCCCeeEccccCccc---ccceeEEECCEEEEEeeecceeehhhcCcc
Confidence 5 676544444322 12334556899999753333 34444443
No 151
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.63 E-value=2.7 Score=35.93 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=47.4
Q ss_pred EEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 52 VLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 52 ~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.+.+...--|-+.|.|... +.++.+..+.|..||..... .....+|.+.. .-..|.+-|.|.+.++...
T Consensus 167 TlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred ehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceEEEecC
Confidence 3445555678999999876 88999999999999986321 12223443221 2368889999987777655
No 152
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=93.61 E-value=3.8 Score=34.27 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=53.8
Q ss_pred EEEEEeCCCCeEEEEe-------cCccccceeEEecCCC----EEEEEeCCCCEEEEEEecC--C-CCCce--eEEeccC
Q 047259 39 QLLKYDPELEETTVLH-------EGFYFANGVALSKDEN----FVVVCESWKFRCRRYWLKG--P-RQGRL--ESFIEHL 102 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~-------~~~~~pnGi~~~~dg~----~Lyv~~~~~~~I~~~~~~~--~-~~~~~--~~~~~~~ 102 (225)
.+|.+|++.+.++-+. +..+.|.|+++..+.+ ++||+.. .+-|..|.+-. + ..+.. +.|- .
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~fk--~ 203 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQFK--I 203 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEeee--c
Confidence 4688888766666543 3456789999987654 4555554 48898998752 1 22222 2221 4
Q ss_pred CCCCCceEECC-CCCEEEEeecC
Q 047259 103 PGGPDNINLAP-DGSFWVALIKM 124 (225)
Q Consensus 103 ~g~Pd~i~~d~-~G~l~v~~~~~ 124 (225)
+....||..|. .|.||++.-..
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred CCcccceeeccccceEEEeeccc
Confidence 55678998886 48999997663
No 153
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.41 E-value=0.91 Score=39.98 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=42.7
Q ss_pred hhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCC-CEEEEEeCC-----CCEEEEEEecC
Q 047259 28 YKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDE-NFVVVCESW-----KFRCRRYWLKG 89 (225)
Q Consensus 28 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg-~~Lyv~~~~-----~~~I~~~~~~~ 89 (225)
+.++++..+..+|+++|.++|+.+.+.+.-.+-+-+.++|-. ..|-+|..+ ..|||.++.++
T Consensus 158 f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 158 FREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp HHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred HHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 456777889999999999999999998888888889999843 455566554 35999999876
No 154
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=93.25 E-value=5.2 Score=35.44 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=60.0
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
++++-+||.+..|-.. ...|+||=+ .+|+.....+ ....-.+++|+|+| +...+-+..+.+
T Consensus 308 ~iaf~~DGSL~~tGGl---------------D~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~ 369 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGL---------------DSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTC 369 (459)
T ss_pred eeEecCCCceeeccCc---------------cchhheeec--ccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcE
Confidence 5778888888877443 235677644 4565544443 45667899999998 477788888877
Q ss_pred EEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259 83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIK 123 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~ 123 (225)
..+++..- ....+.. .-...-....+.+ .|.+.++..-
T Consensus 370 kVWDLR~r--~~ly~ip-AH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 370 KVWDLRMR--SELYTIP-AHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred EEeeeccc--ccceecc-cccchhhheEecccCCeEEEEccc
Confidence 77776531 1111111 0112456788887 4566665543
No 155
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.21 E-value=0.87 Score=39.82 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=62.0
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
|.+.+.|||+...+-+. ...|-.++.++|+.-.... ...--+-++|+.|.+ |.|+-+....
T Consensus 371 n~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsT 432 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDST 432 (480)
T ss_pred eeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCce
Confidence 77888888876666554 3456666777776554444 345568899999976 9999999888
Q ss_pred EEEEEecCCCCCceeEEeccCCCCCC---ceEECCCCCEEEEe
Q 047259 82 CRRYWLKGPRQGRLESFIEHLPGGPD---NINLAPDGSFWVAL 121 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~~~g~Pd---~i~~d~~G~l~v~~ 121 (225)
|-.+++.++ .+..++||--| ...+.+||...++.
T Consensus 433 LKvw~V~tk------Kl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 433 LKVWDVRTK------KLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred EEEEEeeee------eecccCCCCCceEEEEEecCCCceeecC
Confidence 888887642 23334666433 23334566554433
No 156
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.17 E-value=1.8 Score=39.10 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=51.5
Q ss_pred EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC------CCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259 39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES------WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA 112 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d 112 (225)
.+|.++..+|+...+.+++.-.|-..++|||+.+-++-. ...-|+.++.+++.+... ++.. .-+.+=.-++
T Consensus 60 dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-TyfG--r~fT~VaG~~ 136 (668)
T COG4946 60 DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TYFG--RRFTRVAGWI 136 (668)
T ss_pred HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EEec--cccceeeccC
Confidence 567788778888888899998899999999987655321 233566666554312211 1221 1123445577
Q ss_pred CCCCEEEEeec
Q 047259 113 PDGSFWVALIK 123 (225)
Q Consensus 113 ~~G~l~v~~~~ 123 (225)
+||++.|..-.
T Consensus 137 ~dg~iiV~TD~ 147 (668)
T COG4946 137 PDGEIIVSTDF 147 (668)
T ss_pred CCCCEEEEecc
Confidence 88998876533
No 157
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=92.95 E-value=5.1 Score=35.22 Aligned_cols=34 Identities=21% Similarity=-0.018 Sum_probs=28.5
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
..-.+--.++|+|||+ ...+-+.++.|..+++..
T Consensus 155 gH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKT 188 (480)
T ss_pred CCccEEEEEEECCCcc-hhhccccCCeEEEecCCC
Confidence 4456778999999998 668888999999999864
No 158
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=92.87 E-value=6.6 Score=35.02 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=40.0
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
-..++|.|||- ||.+-+.++.|..|++... .....|-. ..+--..|.|..+|.+.++...
T Consensus 350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~--~~~a~Fpg-ht~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ--TNVAKFPG-HTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred eEEeeEcCCce-EEeccCCCceEEEEEcCCc--cccccCCC-CCCceeEEEeccCceEEEEEec
Confidence 45788999984 8888888888888887632 12323332 2233468999988876666655
No 159
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.77 E-value=10 Score=36.80 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=54.2
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC----e----EEEEecCccccceeEEecCCCEEEEE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE----E----TTVLHEGFYFANGVALSKDENFVVVC 75 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~----~----~~~~~~~~~~pnGi~~~~dg~~Lyv~ 75 (225)
.++++++|++++|-.. .+.|..|+..+. . .............++|++..+...++
T Consensus 488 ~i~fs~dg~~latgg~-----------------D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 488 AIGFDRDGEFFATAGV-----------------NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred EEEECCCCCEEEEEeC-----------------CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE
Confidence 4677777776666443 556666664311 0 00111222345688998753335566
Q ss_pred eCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259 76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIK 123 (225)
Q Consensus 76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~ 123 (225)
...++.|..+++.+. .....+. ...+.-..+++.+ +|.++++...
T Consensus 551 ~~~Dg~v~lWd~~~~--~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 551 SNFEGVVQVWDVARS--QLVTEMK-EHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred EeCCCeEEEEECCCC--eEEEEec-CCCCCEEEEEEcCCCCCEEEEEcC
Confidence 666788888887642 1112221 1222345778875 6777666654
No 160
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=92.65 E-value=4.7 Score=33.69 Aligned_cols=81 Identities=11% Similarity=-0.027 Sum_probs=50.8
Q ss_pred cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE
Q 047259 38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF 117 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l 117 (225)
-.|-.+|..+++.......-..-.-|.|+|+|++..+.+ ..+.|.-++......... ...+-.-+.+++.-++++
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNE----EQFKFEVNEISWNNSNDL 161 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeeh----hcccceeeeeeecCCCCE
Confidence 356667766666655555555667899999999666555 456888887653211111 112234567777777788
Q ss_pred EEEeec
Q 047259 118 WVALIK 123 (225)
Q Consensus 118 ~v~~~~ 123 (225)
++...+
T Consensus 162 Fflt~G 167 (313)
T KOG1407|consen 162 FFLTNG 167 (313)
T ss_pred EEEecC
Confidence 777766
No 161
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.58 E-value=1.8 Score=35.93 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=38.5
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
-+.-.++|+.. .|||--...++++||.+++ .....+..+.+|----+.+.|+|.+|.....
T Consensus 227 V~SASL~P~k~-~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 227 VESASLHPKKE-FFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cccccccCCCc-eEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 35567889874 9999999999999999753 1122222222231234567777777776554
No 162
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.56 E-value=3.5 Score=36.56 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=51.5
Q ss_pred EEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259 39 QLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS 116 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~ 116 (225)
.+..+|.++|....+.... -.+...+|-|||.. +|+-+..+.|...+.+|+..+.++-.. .| .--.+++.+||.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~-~v~dlait~Dgk 367 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR--DP-KVHDLAITYDGK 367 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc--cc-eeEEEEEcCCCc
Confidence 4667777666655544322 34566899999974 678888889999999886444443211 11 235789999997
Q ss_pred EEEEee
Q 047259 117 FWVALI 122 (225)
Q Consensus 117 l~v~~~ 122 (225)
..++..
T Consensus 368 ~vl~v~ 373 (519)
T KOG0293|consen 368 YVLLVT 373 (519)
T ss_pred EEEEEe
Confidence 444433
No 163
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=92.40 E-value=2.1 Score=38.35 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=46.5
Q ss_pred eeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEecc-CCCCCCceEECCCCCEEEEeec
Q 047259 62 GVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIEH-LPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 62 Gi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.|.+.|+++ .+++++..++|+.|..... .....+.|-.+ .+|++-.+.+.+||+..++..+
T Consensus 390 ~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 390 CLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred ceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 588899998 8899999999999986532 23334455443 6788999999999998777655
No 164
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.25 E-value=2.8 Score=38.09 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=42.4
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc---eEECCCC-CEEEEeecCC
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN---INLAPDG-SFWVALIKMN 125 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~---i~~d~~G-~l~v~~~~~~ 125 (225)
-...++++||.+ |-++....+-|..+|+.. . +.+..+.|.+|| |.+..|| +||.......
T Consensus 511 aCyALa~spDak-vcFsccsdGnI~vwDLhn-----q-~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 511 ACYALAISPDAK-VCFSCCSDGNIAVWDLHN-----Q-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred hhhhhhcCCccc-eeeeeccCCcEEEEEccc-----c-eeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 456799999998 666666778899999863 1 233346677776 6677888 5998776643
No 165
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=92.25 E-value=0.1 Score=30.05 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=15.6
Q ss_pred CCCcEEEcCCCcEEEEcC
Q 047259 1 FTNDVIEASDGSLYFTVS 18 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~ 18 (225)
++++|++|++|+||++=.
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 478999999999999944
No 166
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.11 E-value=0.84 Score=38.60 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=65.4
Q ss_pred ccceeEEecCCCEEEEEeC----CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhc
Q 047259 59 FANGVALSKDENFVVVCES----WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQS 134 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~ 134 (225)
+-.| ++|+||++||-++. +.+-|-.|+.+.+ ....-.|. ...-.|-.+.+-+||++.|...+.- ..
T Consensus 116 yGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~-t~GiGpHev~lm~DGrtlvvanGGI-------et 185 (366)
T COG3490 116 YGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFS-THGIGPHEVTLMADGRTLVVANGGI-------ET 185 (366)
T ss_pred eccc-ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccc-cCCcCcceeEEecCCcEEEEeCCce-------ec
Confidence 3344 58999999999985 3566777876521 11111121 1122588999999999777666521 12
Q ss_pred ChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEE-EEeCCEEEEeeC
Q 047259 135 CPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSA-VEFEDNLYMASI 202 (225)
Q Consensus 135 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~-~~~~~~Lyv~~~ 202 (225)
+|..-+.-..+ +.| . ++.|+.-..+|++++....|.....-.+--+ ...+|++|++..
T Consensus 186 hpdfgR~~lNl-dsM------e---PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 186 HPDFGRTELNL-DSM------E---PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ccccCccccch-hhc------C---ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 22111100000 011 1 2344433378999888877632111111112 234789998853
No 167
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=92.09 E-value=0.34 Score=27.73 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=23.0
Q ss_pred CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC
Q 047259 1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE 46 (225)
Q Consensus 1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 46 (225)
.||++++++.+ +||++|.. ...|++.+.+
T Consensus 10 ~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~ 39 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLD 39 (43)
T ss_pred CcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCC
Confidence 38999999975 69999997 3577777764
No 168
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=1.7 Score=38.04 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=58.0
Q ss_pred ccCCCCcEEEEEeCCCCeEEEEe--cCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259 32 VEGKPHGQLLKYDPELEETTVLH--EGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN 108 (225)
Q Consensus 32 ~~~~~~g~v~~~d~~~~~~~~~~--~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~ 108 (225)
+.....+.|=.||+..++ +.+. +-...| ..+.+.|+|+++|++++. +.+..||..+..+.. .+..+..|.+..
T Consensus 220 at~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g--~~~kg~tGsirs 295 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG--CGLKGITGSIRS 295 (412)
T ss_pred EEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec--cccCCccCCcce
Confidence 334567888888986332 3322 222233 568899999999999976 689999987532221 122345678999
Q ss_pred eEECCCCCEEEEeec
Q 047259 109 INLAPDGSFWVALIK 123 (225)
Q Consensus 109 i~~d~~G~l~v~~~~ 123 (225)
|.+.+.+.+.....-
T Consensus 296 ih~hp~~~~las~GL 310 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGL 310 (412)
T ss_pred EEEcCCCceEEeecc
Confidence 999998776665544
No 169
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.85 E-value=4.5 Score=35.73 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=39.5
Q ss_pred CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc----CCCCCCceEE--CC--CCCEEEEeec
Q 047259 56 GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH----LPGGPDNINL--AP--DGSFWVALIK 123 (225)
Q Consensus 56 ~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~----~~g~Pd~i~~--d~--~G~l~v~~~~ 123 (225)
....+.|++.+....+||+++.. ..||+|+.+.......+.+... +..-..||++ .. +|.|.+++.+
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred CCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 34579999999999999999987 5899999873211122222211 1122457776 33 3456666665
No 170
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.84 E-value=3.3 Score=36.13 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=64.4
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC---CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHH
Q 047259 65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP---GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKL 141 (225)
Q Consensus 65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~---g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~ 141 (225)
...||+ +|+. ...+.|+.+++++.. .++..... ....+-.+..+|+||++...
T Consensus 65 ~~~dg~-v~~~-~~~G~i~A~d~~~g~----~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------------------ 120 (370)
T COG1520 65 ADGDGT-VYVG-TRDGNIFALNPDTGL----VKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------------------ 120 (370)
T ss_pred EeeCCe-EEEe-cCCCcEEEEeCCCCc----EEecccCcCcceeccCceEEeCCeEEEeccc------------------
Confidence 555665 8887 455689999987531 11221111 12333333348999998866
Q ss_pred HHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259 142 LQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 142 ~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
+.+..+|+ +|+.+-....+. . +......+..++.+|+.+ ..+++..++..
T Consensus 121 -------------------g~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~ 171 (370)
T COG1520 121 -------------------GKLYALDASTGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGT-DDGHLYALNAD 171 (370)
T ss_pred -------------------ceEEEEECCCCcEEEEEecCC-C-eEEecCcEEcCcEEEEec-CCCeEEEEEcc
Confidence 36888998 799888877654 1 112233455678888887 55777777766
No 171
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.26 E-value=9.9 Score=33.51 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCeE--EEEecCccc---cceeEEecCCCEEEEEeCC--C-CEEEEEEecCC--CCCceeEEeccCCCCC
Q 047259 37 HGQLLKYDPELEET--TVLHEGFYF---ANGVALSKDENFVVVCESW--K-FRCRRYWLKGP--RQGRLESFIEHLPGGP 106 (225)
Q Consensus 37 ~g~v~~~d~~~~~~--~~~~~~~~~---pnGi~~~~dg~~Lyv~~~~--~-~~I~~~~~~~~--~~~~~~~~~~~~~g~P 106 (225)
.-.|++....+..- .++.+.... --++..++|+++|++.... . ..|+.++.+.. .......+.....+.-
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 34688888654432 355544333 3489999999998876543 3 56888887642 1233444432222211
Q ss_pred CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC----cEE-EEEECCCC
Q 047259 107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG----KII-MDFNDPNA 181 (225)
Q Consensus 107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G----~~~-~~~~~p~g 181 (225)
..+. ...+.+|+..... .+ .++|++++.+. ... ..++...+
T Consensus 281 ~~v~-~~~~~~yi~Tn~~-------------------------------a~--~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 281 YYVD-HHGDRLYILTNDD-------------------------------AP--NGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEE-EETTEEEEEE-TT--------------------------------T--T-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred EEEE-ccCCEEEEeeCCC-------------------------------CC--CcEEEEecccccccccceeEEcCCCCc
Confidence 1111 1244576655431 22 67888887642 233 23332222
Q ss_pred CcccceeEEEEeCCEEEEee--CCCCeEEEEeCC
Q 047259 182 TYISFVTSAVEFEDNLYMAS--IQSKFVGKLPLN 213 (225)
Q Consensus 182 ~~~~~~t~~~~~~~~Lyv~~--~~~~~i~~~~~~ 213 (225)
. .+..+...+++|++.. -...+|.++++.
T Consensus 327 ~---~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 327 V---SLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp E---EEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred e---eEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 1 2444455677777664 344566677776
No 172
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.99 E-value=6.9 Score=34.76 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccc-cceeEEecCCCEEEEEeCCCCEEEEEE
Q 047259 10 DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYF-ANGVALSKDENFVVVCESWKFRCRRYW 86 (225)
Q Consensus 10 dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~-pnGi~~~~dg~~Lyv~~~~~~~I~~~~ 86 (225)
.+.+||..-+. .| -.........+.-+|.+..+ +++++.- .+... -.-|.||||.++|.-|- ....+...+
T Consensus 224 tdEVWfl~FS~-nG---kyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg-~~e~~~lwD 297 (519)
T KOG0293|consen 224 TDEVWFLQFSH-NG---KYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG-FDEVLSLWD 297 (519)
T ss_pred CCcEEEEEEcC-CC---eeEeeccCCceEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeEEecC-chHheeecc
Confidence 45677764431 11 11122234556677888876 4554432 23333 35699999998775554 344577777
Q ss_pred ecCCCCCcee-EEeccCCCCCCceEECCCCCEEEEeec
Q 047259 87 LKGPRQGRLE-SFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 87 ~~~~~~~~~~-~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.+++ ... .+-......+..++.-+||.=+|+...
T Consensus 298 v~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 298 VDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP 332 (519)
T ss_pred CCcc---hhhhhcccCcCCCcceeEEccCCceeEecCC
Confidence 7642 221 121111223455666666665665544
No 173
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=90.90 E-value=4.6 Score=38.73 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=54.3
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG 115 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G 115 (225)
..|-+..||.+.+....-..-...+.+|....... +++.....-.|..||..+. .-.+.|. +....-..+++.+||
T Consensus 513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~--kvvR~f~-gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR--KVVREFW-GHGNRITDMTFSPDG 588 (910)
T ss_pred CcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh--hhhHHhh-ccccceeeeEeCCCC
Confidence 36778888876443222234445677888877655 6677777789999987541 1123333 233457899999999
Q ss_pred CEEEEeec
Q 047259 116 SFWVALIK 123 (225)
Q Consensus 116 ~l~v~~~~ 123 (225)
++.++..-
T Consensus 589 rWlisasm 596 (910)
T KOG1539|consen 589 RWLISASM 596 (910)
T ss_pred cEEEEeec
Confidence 98776654
No 174
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.49 E-value=12 Score=33.47 Aligned_cols=136 Identities=11% Similarity=0.153 Sum_probs=81.3
Q ss_pred CCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecC-------CCCCceeEEeccCCCCC-
Q 047259 36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKG-------PRQGRLESFIEHLPGGP- 106 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~-------~~~~~~~~~~~~~~g~P- 106 (225)
-.|+||.|...+|++-.+... ...-.-|.++.||. ++++.+.+++|..+.+.. ........|.++ .+|
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H--tlsI 177 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH--TLSI 177 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccC--ccee
Confidence 378899999888875544433 34456799999987 889999999999887632 122233344332 111
Q ss_pred CceEECC---CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCc
Q 047259 107 DNINLAP---DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATY 183 (225)
Q Consensus 107 d~i~~d~---~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~ 183 (225)
..+.++. ++++|.+.-. .-.+++.+. .|.++..+..|..
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D-----------------------------------~t~k~wdlS-~g~LLlti~fp~s-- 219 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASED-----------------------------------RTIKLWDLS-LGVLLLTITFPSS-- 219 (476)
T ss_pred EEEEecCCCccceEEEecCC-----------------------------------ceEEEEEec-cceeeEEEecCCc--
Confidence 2444443 2345554433 133455553 4677777777642
Q ss_pred ccceeEEE--EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259 184 ISFVTSAV--EFEDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 184 ~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
++.++ +.+..+|+++ ..+.|....+-+..
T Consensus 220 ---i~av~lDpae~~~yiGt-~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 220 ---IKAVALDPAERVVYIGT-EEGKIFQNLLFKLS 250 (476)
T ss_pred ---ceeEEEcccccEEEecC-CcceEEeeehhcCC
Confidence 33333 2466777776 44677777665544
No 175
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.44 E-value=4.4 Score=35.12 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCC----CCEEEEEEec-CCCCCceeEEeccCCCCCC-
Q 047259 35 KPHGQLLKYDPELEETTVLHEGFYFAN-GVALSKDENFVVVCESW----KFRCRRYWLK-GPRQGRLESFIEHLPGGPD- 107 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~~~pn-Gi~~~~dg~~Lyv~~~~----~~~I~~~~~~-~~~~~~~~~~~~~~~g~Pd- 107 (225)
.+..+|+.++.+++..+.+..+-..-+ =+.++++++.||+.... ...|++++++ + +..+.+. ......
T Consensus 257 ~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT--~~~~~~~ 331 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLT--CEDGDHY 331 (353)
T ss_dssp TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESS--TTSSTTE
T ss_pred CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEecc--CCCCCce
Confidence 446789999998777666655543343 47889999999988875 4589999987 4 2333332 122234
Q ss_pred ceEECCCCCEEEEeec
Q 047259 108 NINLAPDGSFWVALIK 123 (225)
Q Consensus 108 ~i~~d~~G~l~v~~~~ 123 (225)
...+.++|+.++-...
T Consensus 332 ~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 332 SASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEE-TTSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEc
Confidence 7999999998887665
No 176
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.36 E-value=18 Score=35.02 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=34.0
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccccceeEEe-cCCCEEEEEeCCCCEEEEEEecC
Q 047259 35 KPHGQLLKYDPELEETTVLHEGFYFANGVALS-KDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~-~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
...|.|..||..++..............+.+. +++. ++++-+.++.|..|++..
T Consensus 595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 34677777887655443333333345567775 4566 566667788999999864
No 177
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=90.29 E-value=1.4 Score=38.91 Aligned_cols=20 Identities=25% Similarity=0.039 Sum_probs=18.2
Q ss_pred cccceeEEecCCCEEEEEeC
Q 047259 58 YFANGVALSKDENFVVVCES 77 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~ 77 (225)
..|.-|.+|-||++|||+.+
T Consensus 389 GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CCceeEEeccCCcEEEEEch
Confidence 46899999999999999986
No 178
>PHA02713 hypothetical protein; Provisional
Probab=90.26 E-value=15 Score=34.08 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=75.5
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----CCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESW-----KFRCRRYWLKGPRQGRLESFIEHLPGGPDN 108 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~ 108 (225)
...+++||+.++++..+.+ +..| .+++.- +| .||+.--. ...+.+|++..+ .+..... .+..-.+
T Consensus 319 ~~~v~~Yd~~~n~W~~~~~-m~~~R~~~~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~-mp~~r~~ 391 (557)
T PHA02713 319 LNKVYKINIENKIHVELPP-MIKNRCRFSLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDD---KWKMLPD-MPIALSS 391 (557)
T ss_pred cceEEEEECCCCeEeeCCC-CcchhhceeEEEE-CC-EEEEECCcCCCCCCceEEEEECCCC---eEEECCC-CCccccc
Confidence 4579999998888876542 2211 233332 34 49887543 246888998643 3333221 2210011
Q ss_pred -eEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccc
Q 047259 109 -INLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISF 186 (225)
Q Consensus 109 -i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~ 186 (225)
-+..-+|.||+..+........ ....+..+ . .. ........|.++||. .++...-+.+.++ .
T Consensus 392 ~~~~~~~g~IYviGG~~~~~~~~---~~~~~~~~----~--~~----~~~~~~~~ve~YDP~td~W~~v~~m~~~r---~ 455 (557)
T PHA02713 392 YGMCVLDQYIYIIGGRTEHIDYT---SVHHMNSI----D--ME----EDTHSSNKVIRYDTVNNIWETLPNFWTGT---I 455 (557)
T ss_pred ccEEEECCEEEEEeCCCcccccc---cccccccc----c--cc----ccccccceEEEECCCCCeEeecCCCCccc---c
Confidence 1222368999986542100000 00000000 0 00 000003468999997 5665443333332 1
Q ss_pred eeEEEEeCCEEEEeeCCC------CeEEEEeCCC
Q 047259 187 VTSAVEFEDNLYMASIQS------KFVGKLPLNT 214 (225)
Q Consensus 187 ~t~~~~~~~~Lyv~~~~~------~~i~~~~~~~ 214 (225)
...++..+++||+..-.+ ..+.+|+..+
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 223456789999974321 3467787776
No 179
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=90.16 E-value=0.28 Score=28.24 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=17.1
Q ss_pred CCCceEECCCCCEEEEeec
Q 047259 105 GPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 105 ~Pd~i~~d~~G~l~v~~~~ 123 (225)
.+.+|++|++|++||+...
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 4789999999999999875
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=90.16 E-value=7.6 Score=33.47 Aligned_cols=136 Identities=11% Similarity=0.013 Sum_probs=75.4
Q ss_pred CcEEEEEeCCCCeEEEEe------cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC-C-CCCceeEEecc---CCCC
Q 047259 37 HGQLLKYDPELEETTVLH------EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG-P-RQGRLESFIEH---LPGG 105 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~------~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~-~-~~~~~~~~~~~---~~g~ 105 (225)
.--|..+|.-+|+++.-. +.+..+..++|+|||..||... +++|..|+... + .-....++... ..|.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 334566776667766542 2345678999999999888665 46899998842 1 11111111111 1122
Q ss_pred CCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCc
Q 047259 106 PDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATY 183 (225)
Q Consensus 106 Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~ 183 (225)
-.-+++.|... .+....- ...+-.+..+ +.++..+....|
T Consensus 210 isc~a~sP~~~~~~a~gsY------------------------------------~q~~giy~~~~~~pl~llggh~g-- 251 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSY------------------------------------GQRVGIYNDDGRRPLQLLGGHGG-- 251 (406)
T ss_pred eeeeeccCCCCcceeeecc------------------------------------cceeeeEecCCCCceeeecccCC--
Confidence 22334444221 1111111 1233344444 455666654333
Q ss_pred ccceeEEE--EeCCEEEEeeCCCCeEEEEeCCC
Q 047259 184 ISFVTSAV--EFEDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 184 ~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
++|-+. +++++||.+.-..++|..-++..
T Consensus 252 --GvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 252 --GVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred --CeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 567665 46789999999999998877653
No 181
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=89.79 E-value=19 Score=34.99 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=53.0
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--eEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--ETTVLHEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
.|.++++|++..|... .|.|-+++..+. +.+.+-.......+|+.. +. .+++.+.++.
T Consensus 18 ~i~~d~~gefi~tcgs-----------------dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~-~f~~~s~~~t 77 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGS-----------------DGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN-HFLTGSEQNT 77 (933)
T ss_pred EEEEcCCCCEEEEecC-----------------CCceEEeecCCcccCCchhhccCceeEEEeec--cc-ceEEeeccce
Confidence 4778899985555554 445555543211 111111022233455544 33 6677788899
Q ss_pred EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
|.+|..... ..+..+....---+.++++.+|.+.++...
T Consensus 78 v~~y~fps~---~~~~iL~Rftlp~r~~~v~g~g~~iaagsd 116 (933)
T KOG1274|consen 78 VLRYKFPSG---EEDTILARFTLPIRDLAVSGSGKMIAAGSD 116 (933)
T ss_pred EEEeeCCCC---CccceeeeeeccceEEEEecCCcEEEeecC
Confidence 999987532 222111111112378999999988777665
No 182
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=89.76 E-value=12 Score=36.83 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=83.8
Q ss_pred EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECC-CCCEEEEeecCCchhhh
Q 047259 53 LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAP-DGSFWVALIKMNQTGVR 130 (225)
Q Consensus 53 ~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~ 130 (225)
...+...+.|++.+--++-+|.++.....|..-++++. ...+++. .+ ..|..+++++ .|.+|.++++.-
T Consensus 475 ~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~---~~~vl~~~~l-~~~r~~~v~p~~g~~~wtd~~~~----- 545 (877)
T KOG1215|consen 475 CGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGS---SRKVLVSKDL-DLPRSIAVDPEKGLMFWTDWGQP----- 545 (877)
T ss_pred eccCccccCcEEEEeccCCceecccCCceeEEEEccCC---ceeEEEecCC-CCccceeeccccCeeEEecCCCC-----
Confidence 45678899999999888889999999999988887653 1223332 33 6799999998 578899998831
Q ss_pred hhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCC-eE
Q 047259 131 AIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSK-FV 207 (225)
Q Consensus 131 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~-~i 207 (225)
. ++.|-..+|.....+..- + +..+++++. ..+++|-.+...+ .|
T Consensus 546 -----------------------------~-~i~ra~~dg~~~~~l~~~-~--~~~p~glt~d~~~~~~yw~d~~~~~~i 592 (877)
T KOG1215|consen 546 -----------------------------P-RIERASLDGSERAVLVTN-G--ILWPNGLTIDYETDRLYWADAKLDYTI 592 (877)
T ss_pred -----------------------------c-hhhhhcCCCCCceEEEeC-C--ccCCCcceEEeecceeEEEcccCCcce
Confidence 2 455556666554444321 1 112222332 3678888888877 67
Q ss_pred EEEeCCCcccc
Q 047259 208 GKLPLNTPEAE 218 (225)
Q Consensus 208 ~~~~~~~~~~~ 218 (225)
.....++..-+
T Consensus 593 ~~~~~~g~~r~ 603 (877)
T KOG1215|consen 593 ESANMDGQNRR 603 (877)
T ss_pred eeeecCCCceE
Confidence 77777776553
No 183
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.74 E-value=16 Score=33.35 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=72.4
Q ss_pred CcEEEEEeCCCCeEEEEecCccccce-eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCC----CCceEE
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANG-VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGG----PDNINL 111 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnG-i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~----Pd~i~~ 111 (225)
....+.+|.. |.++-.......... +..-++|.+++... +++..+++.|. ..... .+++. ==.+..
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~----v~~~~-~l~~~~~~~HHD~~~ 197 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGK----VIWEY-DLPGGYYDFHHDIDE 197 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT------EEEEE-E--TTEE-B-S-EEE
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCC----EEEee-ecCCcccccccccEE
Confidence 5678889986 776654433322222 67778888554444 78889988653 21111 23321 135778
Q ss_pred CCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC-----CCCC----
Q 047259 112 APDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND-----PNAT---- 182 (225)
Q Consensus 112 d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~-----p~g~---- 182 (225)
.++|++++.......... +.-.+ .. .-.|+++|++|+++..+.. |...
T Consensus 198 l~nGn~L~l~~~~~~~~~------~~~~~--------------~~---~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~ 254 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDE------DKDVD--------------TV---EDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLK 254 (477)
T ss_dssp -TTS-EEEEEEETTEE-T------S-EE--------------------S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGG
T ss_pred CCCCCEEEEEeecccccC------CCCcc--------------Ee---cCEEEEECCCCCEEEEEehHHhCCcccccccc
Confidence 889998777664211000 00000 00 4579999999999988742 1111
Q ss_pred ------------cc--cceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259 183 ------------YI--SFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 183 ------------~~--~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
.. -...++.. .++.|+|++-..+.|.+++..+.
T Consensus 255 ~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 255 PYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp T--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred cccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 00 01233433 36999999999999999995443
No 184
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=89.49 E-value=19 Score=33.90 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=80.2
Q ss_pred CcEEEEEeCCCCeEEE-EecC----ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCCCCCceE
Q 047259 37 HGQLLKYDPELEETTV-LHEG----FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPGGPDNIN 110 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~-~~~~----~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~ 110 (225)
.-.||++.++. .+++ ..+. .....-|.++-|++.++++.-....+..+..++........+... .-..-.-|+
T Consensus 404 ~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 404 RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLV 482 (691)
T ss_pred ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence 34678888753 3322 2222 234567899999988887776667777887765322222222211 111236789
Q ss_pred ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEE-CCCCCcccceeE
Q 047259 111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATYISFVTS 189 (225)
Q Consensus 111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~-~p~g~~~~~~t~ 189 (225)
+.++|+...+... .+.|..++..++...-+. ..+- ..|.
T Consensus 483 ~SsdG~yiaa~~t------------------------------------~g~I~v~nl~~~~~~~l~~rln~----~vTa 522 (691)
T KOG2048|consen 483 VSSDGNYIAAIST------------------------------------RGQIFVYNLETLESHLLKVRLNI----DVTA 522 (691)
T ss_pred EcCCCCEEEEEec------------------------------------cceEEEEEcccceeecchhccCc----ceee
Confidence 9999998887765 567888888765544443 2221 2333
Q ss_pred EEE---eCCEEEEeeCCCCeEEEEeC
Q 047259 190 AVE---FEDNLYMASIQSKFVGKLPL 212 (225)
Q Consensus 190 ~~~---~~~~Lyv~~~~~~~i~~~~~ 212 (225)
+.. ..++|-++ ..++.+..|++
T Consensus 523 ~~~~~~~~~~lvva-ts~nQv~efdi 547 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVA-TSNNQVFEFDI 547 (691)
T ss_pred eeccccccCcEEEE-ecCCeEEEEec
Confidence 332 24666554 45688888887
No 185
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=88.94 E-value=11 Score=32.54 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=59.5
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC---ccccceeEEecCCC-EEEEEe
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG---FYFANGVALSKDEN-FVVVCE 76 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~-~Lyv~~ 76 (225)
|-|+..+++||.-.++.++ .|.|-.|+.++.++...... ..--|.+.+-|..- .+.||+
T Consensus 350 yvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred cccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 5678888888877777666 67777777665543322211 12235666666543 345555
Q ss_pred CCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEECCCCCEEEEeec
Q 047259 77 SWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 77 ~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
..+.|+.+++.|. -++.|..+ ..|-=-+.++.++|.+.-+...
T Consensus 413 -rsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 413 -RSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred -CCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 4579999998763 23334332 1222246677888875555444
No 186
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=88.77 E-value=3.1 Score=34.95 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=49.7
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
-|-+++.|||.+-.+ + ...|.++.+|.++++.-.-.+....-+.++|+|+. .+++......
T Consensus 195 v~t~~vSpDGslcas--G---------------gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr--ywL~~at~~s 255 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCAS--G---------------GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR--YWLCAATATS 255 (315)
T ss_pred EEEEEECCCCCEEec--C---------------CCCceEEEEEccCCceeEeccCCCeEeeEEecCCc--eeEeeccCCc
Confidence 466788888877665 2 23788888887766654445667778999999973 6666666667
Q ss_pred EEEEEecC
Q 047259 82 CRRYWLKG 89 (225)
Q Consensus 82 I~~~~~~~ 89 (225)
|..++++.
T Consensus 256 IkIwdl~~ 263 (315)
T KOG0279|consen 256 IKIWDLES 263 (315)
T ss_pred eEEEeccc
Confidence 88888764
No 187
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=88.71 E-value=2.3 Score=29.28 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=34.0
Q ss_pred ceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259 160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
.+.|+-+|+. ....+.. | +..++++.. .++.|||++.....|.++++++
T Consensus 35 ~~~Vvyyd~~--~~~~va~--g--~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGK--EVKVVAS--G--FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCC--EeEEeec--c--CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 5788888764 2333332 2 344555554 5789999999999999999865
No 188
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.60 E-value=20 Score=33.12 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=67.6
Q ss_pred EEEEEEecCCCCCceeEEec-cCCC-CCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259 81 RCRRYWLKGPRQGRLESFIE-HLPG-GPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN 157 (225)
Q Consensus 81 ~I~~~~~~~~~~~~~~~~~~-~~~g-~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~ 157 (225)
.|++|++++. ..+-... ..+| .-+..++|. +|.|=|+......+. ....
T Consensus 249 ~I~kf~~~~~---~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~-------------------------~~~~ 300 (521)
T PF09826_consen 249 TIYKFALDGG---KIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWW-------------------------DSED 300 (521)
T ss_pred EEEEEEccCC---cEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccc-------------------------cCCC
Confidence 5778887652 2322222 2455 467899997 577777766521100 0111
Q ss_pred CcceEEEEECCCCcEEEEEEC-CCCCcccceeEEEEeCCEEEEeeCCC-CeEEEEeCCCccc
Q 047259 158 DAGARIVKVDTHGKIIMDFND-PNATYISFVTSAVEFEDNLYMASIQS-KFVGKLPLNTPEA 217 (225)
Q Consensus 158 ~~~~~V~~~d~~G~~~~~~~~-p~g~~~~~~t~~~~~~~~Lyv~~~~~-~~i~~~~~~~~~~ 217 (225)
.+...|..+|.+-+.+..+.. ..|+ .+-++-+.+++.||.++.. +-+.+++|..+.+
T Consensus 301 ~s~N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~ 359 (521)
T PF09826_consen 301 TSSNNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPAN 359 (521)
T ss_pred CceEEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEeecCceEEEECCCCCC
Confidence 237889999988888777764 2233 3555667799999998877 8899998877543
No 189
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=88.58 E-value=2.1 Score=37.78 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.6
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
..|.+|=|.|+|||+.+-.+-|++|++++
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsD 343 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISD 343 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCC
Confidence 57889999999999999999999999975
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=88.49 E-value=4.8 Score=34.78 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=54.9
Q ss_pred CCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 36 PHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
..+.|..++..+.++...++ +-..-..+.|||||+.+..+....-||....+.+. .-.++......-.|+++.+|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----KGYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----eeEEecccccCceeEEECCC
Confidence 35566666666666666553 44455779999999988888888888888887642 22333333334589999999
Q ss_pred CCEEEE
Q 047259 115 GSFWVA 120 (225)
Q Consensus 115 G~l~v~ 120 (225)
|++-.-
T Consensus 145 g~f~ai 150 (447)
T KOG4497|consen 145 GQFCAI 150 (447)
T ss_pred Cceeee
Confidence 986443
No 191
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=88.33 E-value=12 Score=34.30 Aligned_cols=64 Identities=11% Similarity=-0.034 Sum_probs=44.3
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC-C---CCCCceEECCCCCEEEEeec
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL-P---GGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~-~---g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.-+.-+|.|+.+.-|++.+..+.+..++.+. ...+.++|-.-. . -.|.-+++++||.+..+...
T Consensus 270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~ 337 (641)
T KOG0772|consen 270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL 337 (641)
T ss_pred eeeccccccCcccceEEecCCCcEEEEecCC-chhheeEEeeccCCCcccCceeeecCCCcchhhhccc
Confidence 3456688999888899998888777777654 245666665321 1 14778999999988554433
No 192
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.17 E-value=18 Score=32.10 Aligned_cols=84 Identities=15% Similarity=0.022 Sum_probs=53.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-c--CCCCCCceEECC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-H--LPGGPDNINLAP 113 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~--~~g~Pd~i~~d~ 113 (225)
...|=.||..+.......+..+.-..+.++.+|..|..+ +..+.+-.++..+. +-..+|.. . ...-..-..+.|
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~--eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK--EIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc--cEEEEeeccccccccccceeEECC
Confidence 445777786555655555566677889999999888777 66778888887652 22222321 1 111256678888
Q ss_pred CCCEEEEeec
Q 047259 114 DGSFWVALIK 123 (225)
Q Consensus 114 ~G~l~v~~~~ 123 (225)
+|.+..+...
T Consensus 398 d~~YvaAGS~ 407 (459)
T KOG0288|consen 398 DGSYVAAGSA 407 (459)
T ss_pred CCceeeeccC
Confidence 8776555544
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=88.10 E-value=7.7 Score=36.44 Aligned_cols=78 Identities=18% Similarity=0.060 Sum_probs=44.6
Q ss_pred EEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CC--CCCCceEECCC
Q 047259 39 QLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LP--GGPDNINLAPD 114 (225)
Q Consensus 39 ~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~--g~Pd~i~~d~~ 114 (225)
.|-.||..+++... +...-..--||||||||+ +..+....++|..|++... .+.+.++ .+ +.--.|.+.=|
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~----e~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSR----EQPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCC----CCccccCCCCccCcceeEEEEec
Confidence 34445544333322 333445678999999998 6677778899999998631 1122221 11 12234555567
Q ss_pred CCEEEEe
Q 047259 115 GSFWVAL 121 (225)
Q Consensus 115 G~l~v~~ 121 (225)
|++.++.
T Consensus 776 gr~viv~ 782 (1012)
T KOG1445|consen 776 GRIVIVV 782 (1012)
T ss_pred CcEEEEe
Confidence 7755544
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.92 E-value=25 Score=33.49 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259 2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
.||+++.|||+ +.++-. .+++.||+..|..-.. -..-..-+-+|++.||+ +|.+-...
T Consensus 15 i~d~afkPDGsqL~lAAg-------------------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aD 74 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG-------------------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSAD 74 (1081)
T ss_pred hheeEECCCCceEEEecC-------------------CEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCc
Confidence 37899999995 555522 3899999876654332 23334568899999997 66665544
Q ss_pred CEEEEE
Q 047259 80 FRCRRY 85 (225)
Q Consensus 80 ~~I~~~ 85 (225)
..|..+
T Consensus 75 K~VI~W 80 (1081)
T KOG1538|consen 75 KSVIIW 80 (1081)
T ss_pred eeEEEe
Confidence 333333
No 195
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=87.69 E-value=29 Score=33.87 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=32.3
Q ss_pred EEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 40 LLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 40 v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
|-.++.++...+....+...| -++.++|++.+| .+.+.++.|+.|+++.
T Consensus 120 vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL-Avss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 120 VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL-AVSSCDGKVQIWDLQD 169 (933)
T ss_pred EEEEeccccchheeecccCCceeeeeEcCCCCEE-EEEecCceEEEEEccc
Confidence 444444434444445555555 589999999844 5556778999999875
No 196
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.55 E-value=27 Score=33.29 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccccce-eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 35 KPHGQLLKYDPELEETTVLHEGFYFANG-VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnG-i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
..+-|+|.++. ....+...+...|-. +.|+|.| .|++.....+..|++.... ....++|+.++.. -+=+.+.|
T Consensus 472 D~svRLWsl~t--~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~-~~PlRifaghlsD-V~cv~FHP 545 (707)
T KOG0263|consen 472 DSSVRLWSLDT--WSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDH-NKPLRIFAGHLSD-VDCVSFHP 545 (707)
T ss_pred Ccceeeeeccc--ceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeeccc-CCchhhhcccccc-cceEEECC
Confidence 45678888774 344555566666654 8899986 7777766667777665332 3456777754432 23356666
Q ss_pred CCCEEE
Q 047259 114 DGSFWV 119 (225)
Q Consensus 114 ~G~l~v 119 (225)
+.++..
T Consensus 546 Ns~Y~a 551 (707)
T KOG0263|consen 546 NSNYVA 551 (707)
T ss_pred cccccc
Confidence 544333
No 197
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.55 E-value=15 Score=34.35 Aligned_cols=139 Identities=11% Similarity=0.035 Sum_probs=77.3
Q ss_pred CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCCC-----CEEEEEEecCCCCCceeEEeccCCCCCCce
Q 047259 37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESWK-----FRCRRYWLKGPRQGRLESFIEHLPGGPDNI 109 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i 109 (225)
...+++||+..++|..++.= -..--|++.- ++.||+.--.. +.|-+|++.++ .++....... .=.+.
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~-~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLT-RRSGH 421 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCC---cccccCCCCc-ceeee
Confidence 56899999998888885321 1223344443 23588875433 46888988753 3333332111 11233
Q ss_pred EEC-CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccce
Q 047259 110 NLA-PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFV 187 (225)
Q Consensus 110 ~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~ 187 (225)
++. -+|.||+........ +.-..|.++||. .++...-+.+..+ .-
T Consensus 422 gv~~~~g~iYi~GG~~~~~------------------------------~~l~sve~YDP~t~~W~~~~~M~~~R---~~ 468 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSS------------------------------NCLNSVECYDPETNTWTLIAPMNTRR---SG 468 (571)
T ss_pred EEEEECCEEEEEcCcCCCc------------------------------cccceEEEEcCCCCceeecCCccccc---cc
Confidence 333 368999998763321 003578999997 5554443333322 12
Q ss_pred eEEEEeCCEEEEeeCCC-----CeEEEEeCCC
Q 047259 188 TSAVEFEDNLYMASIQS-----KFVGKLPLNT 214 (225)
Q Consensus 188 t~~~~~~~~Lyv~~~~~-----~~i~~~~~~~ 214 (225)
..++.-++.||+..=.. ..|-+|+..+
T Consensus 469 ~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 469 FGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred ceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 23555688999875332 2355565544
No 198
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.37 E-value=16 Score=34.10 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeC------CCCEEEEEEecCCCCCceeEEecc-CCCCCC
Q 047259 37 HGQLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCES------WKFRCRRYWLKGPRQGRLESFIEH-LPGGPD 107 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd 107 (225)
-..+-+||+.+.+|+.++.-. ..-.|.+.- ++.||+.-- .-..+.+|++.++ .++..... .+-.--
T Consensus 395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~ 469 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGF 469 (571)
T ss_pred cccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccc
Confidence 346889999988888875332 233344433 235999875 2357888998753 33332221 111112
Q ss_pred ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccc
Q 047259 108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISF 186 (225)
Q Consensus 108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~ 186 (225)
++++- +|.||+...-.... ....|.++||.. ++...-..+.. ..
T Consensus 470 g~a~~-~~~iYvvGG~~~~~-------------------------------~~~~VE~ydp~~~~W~~v~~m~~~---rs 514 (571)
T KOG4441|consen 470 GVAVL-NGKIYVVGGFDGTS-------------------------------ALSSVERYDPETNQWTMVAPMTSP---RS 514 (571)
T ss_pred eEEEE-CCEEEEECCccCCC-------------------------------ccceEEEEcCCCCceeEcccCccc---cc
Confidence 34443 57899987642110 134599999986 44433112222 12
Q ss_pred eeEEEEeCCEEEEee
Q 047259 187 VTSAVEFEDNLYMAS 201 (225)
Q Consensus 187 ~t~~~~~~~~Lyv~~ 201 (225)
...++..++.||+..
T Consensus 515 ~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 515 AVGVVVLGGKLYAVG 529 (571)
T ss_pred cccEEEECCEEEEEe
Confidence 334566788998874
No 199
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.29 E-value=15 Score=30.29 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=48.1
Q ss_pred cEEEEEeCCCCeEEEEecCc----cccceeEEecCCCEEEEEe--CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259 38 GQLLKYDPELEETTVLHEGF----YFANGVALSKDENFVVVCE--SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL 111 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~----~~pnGi~~~~dg~~Lyv~~--~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~ 111 (225)
|.+++++.. ..+.+.... ..+.-+++++||+.+.+.. ....+++.....+ ....... ........+
T Consensus 2 G~l~~~~~~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----~~~~~~~--g~~l~~PS~ 73 (253)
T PF10647_consen 2 GQLVRVSGG--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----PVRPVLT--GGSLTRPSW 73 (253)
T ss_pred CcEEEecCC--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----cceeecc--CCccccccc
Confidence 567776643 344443222 2577899999998665544 4556777776543 2222221 113345688
Q ss_pred CCCCCEEEEeecC
Q 047259 112 APDGSFWVALIKM 124 (225)
Q Consensus 112 d~~G~l~v~~~~~ 124 (225)
|++|.+|++....
T Consensus 74 d~~g~~W~v~~~~ 86 (253)
T PF10647_consen 74 DPDGWVWTVDDGS 86 (253)
T ss_pred cCCCCEEEEEcCC
Confidence 9999999998764
No 200
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.86 E-value=29 Score=33.05 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=84.4
Q ss_pred EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-e--cCccccceeEEecCCCEEEEEeCCCCE
Q 047259 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-H--EGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 5 v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
++++++|.+.+|--+ .+|..+|..+++.... . +....-..++++||+..||.+. ....
T Consensus 25 ~~~s~nG~~L~t~~~------------------d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~l 85 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG------------------DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQL 85 (775)
T ss_pred eeECCCCCEEEEecC------------------ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccce
Confidence 677788877776432 3566777666665321 1 2334557899999988665554 4556
Q ss_pred EEEEEecCCCCCceeEEecc---CCCCC-CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259 82 CRRYWLKGPRQGRLESFIEH---LPGGP-DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN 157 (225)
Q Consensus 82 I~~~~~~~~~~~~~~~~~~~---~~g~P-d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~ 157 (225)
+..|.+..+ .++.. ....| -.|++|+.|.+..+...
T Consensus 86 lrv~~L~tg------k~irswKa~He~Pvi~ma~~~~g~LlAtgga---------------------------------- 125 (775)
T KOG0319|consen 86 LRVWSLPTG------KLIRSWKAIHEAPVITMAFDPTGTLLATGGA---------------------------------- 125 (775)
T ss_pred EEEEEcccc------hHhHhHhhccCCCeEEEEEcCCCceEEeccc----------------------------------
Confidence 666777642 12221 11234 48999999855444433
Q ss_pred CcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCCCCeEEEEeCCCccc
Q 047259 158 DAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQSKFVGKLPLNTPEA 217 (225)
Q Consensus 158 ~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~~~~i~~~~~~~~~~ 217 (225)
.+.|.+-|= .+..+-.+..-.|. ++.+.++. .+|..+..-...+.++++.....
T Consensus 126 --D~~v~VWdi~~~~~th~fkG~gGv----Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 126 --DGRVKVWDIKNGYCTHSFKGHGGV----VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred --cceEEEEEeeCCEEEEEecCCCce----EEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 233434333 34555556543232 34445443 34557777778888888875544
No 201
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=86.65 E-value=13 Score=34.57 Aligned_cols=28 Identities=21% Similarity=0.088 Sum_probs=22.1
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
+.-|++-.+.||. ||+... +.|++|...
T Consensus 290 S~vnsL~~D~dGs-LWv~t~--~giv~~~~a 317 (671)
T COG3292 290 STVNSLWLDTDGS-LWVGTY--GGIVRYLTA 317 (671)
T ss_pred ccccceeeccCCC-Eeeecc--CceEEEecc
Confidence 4458899999997 999876 578888754
No 202
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=86.31 E-value=27 Score=32.03 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=46.1
Q ss_pred CCcEEEEEeCCCCeEEEEecCc-----cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259 36 PHGQLLKYDPELEETTVLHEGF-----YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN 110 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~-----~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~ 110 (225)
+.|.++.++...+.+.....-+ .+--.++|.++|+ +.-.|++ +-|+.+...+..+. .++++ .+|.--.++
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~-G~i~Iw~~~~~~~~-k~~~a--H~ggv~~L~ 294 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSG-GNILIWSKGTNRIS-KQVHA--HDGGVFSLC 294 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCC-ceEEEEeCCCceEE-eEeee--cCCceEEEE
Confidence 4667777777655443322111 4556788888887 6556654 57777776543222 22333 234456778
Q ss_pred ECCCCCEEE
Q 047259 111 LAPDGSFWV 119 (225)
Q Consensus 111 ~d~~G~l~v 119 (225)
+-.+|.|.-
T Consensus 295 ~lr~GtllS 303 (626)
T KOG2106|consen 295 MLRDGTLLS 303 (626)
T ss_pred EecCccEee
Confidence 888888776
No 203
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=85.75 E-value=16 Score=33.49 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=53.8
Q ss_pred CCCCcEEEEEeCCCCeEEE------EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC-CCC
Q 047259 34 GKPHGQLLKYDPELEETTV------LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP-GGP 106 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~------~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-g~P 106 (225)
+-..|.|-.|+..+..+.. .......-..|.||+||+ .+.+-...+.+..+++... ...+.++. +++ .+|
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~-kkpL~~~t-gL~t~~~ 411 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF-KKPLNVRT-GLPTPFP 411 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc-ccchhhhc-CCCccCC
Confidence 3447777777743222211 112233567899999998 5567777888888888641 12222333 233 234
Q ss_pred -CceEECCCCCEEEEeec
Q 047259 107 -DNINLAPDGSFWVALIK 123 (225)
Q Consensus 107 -d~i~~d~~G~l~v~~~~ 123 (225)
.+++|.|+..|.++...
T Consensus 412 ~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCccccCCCceEEEeccc
Confidence 58999999999998776
No 204
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=85.71 E-value=22 Score=30.63 Aligned_cols=70 Identities=6% Similarity=0.190 Sum_probs=43.4
Q ss_pred CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCc
Q 047259 105 GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATY 183 (225)
Q Consensus 105 ~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~ 183 (225)
.++.-.+|+.|++..+..+ .|.+..++.+. +.+..+..-.
T Consensus 155 sas~~~fdr~g~yIitGts------------------------------------KGkllv~~a~t~e~vas~rits--- 195 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTS------------------------------------KGKLLVYDAETLECVASFRITS--- 195 (405)
T ss_pred ccccccccCCCCEEEEecC------------------------------------cceEEEEecchheeeeeeeech---
Confidence 3555578888887666655 57788888764 4454444311
Q ss_pred ccceeEE-EEeCCEEEEeeCCCCeEEEEeCC
Q 047259 184 ISFVTSA-VEFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 184 ~~~~t~~-~~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
...+-.+ +...|+.++.+....-|..|++.
T Consensus 196 ~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 196 VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 1122222 33567777888887778888765
No 205
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=85.33 E-value=11 Score=32.45 Aligned_cols=98 Identities=14% Similarity=0.191 Sum_probs=56.3
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeCCC
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV---LHEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
|++.+.|...|.++-+. .+.|-.+|...-.++. ..+.-..-..|.+.|.|.+|.|.. ..
T Consensus 176 n~l~FHPre~ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-dH 237 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-DH 237 (430)
T ss_pred cceeecchhheEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-CC
Confidence 45556665555555443 5666666653111111 223334456899999999776654 44
Q ss_pred CEEEEEEecCCCCCceeEEeccC-----CCCCCceEECCCCCEEEEeec
Q 047259 80 FRCRRYWLKGPRQGRLESFIEHL-----PGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 80 ~~I~~~~~~~~~~~~~~~~~~~~-----~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
..+..|++++ .+-|...- .+.-......+.|+|||+...
T Consensus 238 p~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 238 PTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 5667788764 23344211 122344567788999999766
No 206
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=84.82 E-value=1.1 Score=22.87 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=12.6
Q ss_pred CceEECCCCCEEEEee
Q 047259 107 DNINLAPDGSFWVALI 122 (225)
Q Consensus 107 d~i~~d~~G~l~v~~~ 122 (225)
..|..|++|+||++..
T Consensus 8 ~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEE-TTSCEEEEET
T ss_pred EEEEEcCCcCEEEEeC
Confidence 4688999999999864
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.78 E-value=11 Score=33.23 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=40.7
Q ss_pred ccceeEEecC-CCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEECCCCC-EEEEeec
Q 047259 59 FANGVALSKD-ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLAPDGS-FWVALIK 123 (225)
Q Consensus 59 ~pnGi~~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~-l~v~~~~ 123 (225)
|+.+|.|-++ -.+-|++-+..+.+..|++.. +.+.+... ....-..+..+++|+ ||+++..
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~----qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH----QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcc----cCcceeEeccccCcceeeeecCCCcEEEEeccc
Confidence 6778888775 135889999999999999863 33344432 122235788888887 5666543
No 208
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.77 E-value=21 Score=29.49 Aligned_cols=65 Identities=17% Similarity=0.045 Sum_probs=37.6
Q ss_pred ccceeEEecCCCEE-EEEe-CCCCEEEEEEecCCCCCceeEEec------cCCCCCCceEECCCCCEEEEeec
Q 047259 59 FANGVALSKDENFV-VVCE-SWKFRCRRYWLKGPRQGRLESFIE------HLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 59 ~pnGi~~~~dg~~L-yv~~-~~~~~I~~~~~~~~~~~~~~~~~~------~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.-..+.+||||.++ +|.. ...++|+.-.+..+..+....+.. ........+++-+++.|.|....
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 34689999999877 4442 234677766554221221111111 11123567888888898887755
No 209
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=84.51 E-value=26 Score=30.32 Aligned_cols=70 Identities=23% Similarity=0.118 Sum_probs=46.1
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCe---EEEEecCccccceeEEecCCCEEEEEeCC
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEE---TTVLHEGFYFANGVALSKDENFVVVCESW 78 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~---~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~ 78 (225)
.+|++.+||.-+.|.... +.-+||.++-- +.+ ++.-. ....|.-++|+||-+.+.|+--.
T Consensus 90 t~~~FsSdGK~lat~~~D---------------r~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGD---------------RSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred eeeEEcCCCceeEEEeCC---------------ceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEcc
Confidence 368888899877776651 13344544311 111 11111 13479999999999988888888
Q ss_pred CCEEEEEEec
Q 047259 79 KFRCRRYWLK 88 (225)
Q Consensus 79 ~~~I~~~~~~ 88 (225)
.+.|+.|.+.
T Consensus 154 g~~l~vyk~~ 163 (420)
T KOG2096|consen 154 GNKLCVYKLV 163 (420)
T ss_pred CCEEEEEEee
Confidence 8899999875
No 210
>PRK13684 Ycf48-like protein; Provisional
Probab=84.47 E-value=26 Score=30.27 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=34.4
Q ss_pred eEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEE-EecCCCCCceeEEeccCC-----CCCCceEECCCCCEEEEe
Q 047259 49 ETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRY-WLKGPRQGRLESFIEHLP-----GGPDNINLAPDGSFWVAL 121 (225)
Q Consensus 49 ~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~-~~~~~~~~~~~~~~~~~~-----g~Pd~i~~d~~G~l~v~~ 121 (225)
.++.+... ....++|++.++++ +|++... +.+ ++ ..+++ ...+... .+ ...-++++.+++.+|++.
T Consensus 205 tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~-G~~-~~~s~d~G--~sW~~~~--~~~~~~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 205 AWTPHQRNSSRRLQSMGFQPDGN-LWMLARG-GQI-RFNDPDDL--ESWSKPI--IPEITNGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred eEEEeeCCCcccceeeeEcCCCC-EEEEecC-CEE-EEccCCCC--Ccccccc--CCccccccceeeEEEcCCCCEEEEc
Confidence 35444322 34568899999887 5555432 333 34 23321 1111111 11 112456777788888865
Q ss_pred ec
Q 047259 122 IK 123 (225)
Q Consensus 122 ~~ 123 (225)
..
T Consensus 278 ~~ 279 (334)
T PRK13684 278 GN 279 (334)
T ss_pred CC
Confidence 33
No 211
>PHA02790 Kelch-like protein; Provisional
Probab=84.42 E-value=32 Score=31.29 Aligned_cols=76 Identities=7% Similarity=-0.073 Sum_probs=39.2
Q ss_pred cEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC---CCEEEEEEecCCCCCceeEEeccCCCCC--Cce
Q 047259 38 GQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESW---KFRCRRYWLKGPRQGRLESFIEHLPGGP--DNI 109 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~g~P--d~i 109 (225)
..+.+||+.+++++.+.+ +..| .+.+. -+| .|||.--. .+.+.+|+++.+ .++.... .+ .| ...
T Consensus 331 ~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~-~~g-~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~-m~-~~r~~~~ 402 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPS-LLKPRCNPAVAS-INN-VIYVIGGHSETDTTTEYLLPNHD---QWQFGPS-TY-YPHYKSC 402 (480)
T ss_pred CceEEEECCCCeEEECCC-CCCCCcccEEEE-ECC-EEEEecCcCCCCccEEEEeCCCC---EEEeCCC-CC-Cccccce
Confidence 457889988788877542 2222 12222 234 59987432 245778887642 3322111 11 12 222
Q ss_pred EECCCCCEEEEe
Q 047259 110 NLAPDGSFWVAL 121 (225)
Q Consensus 110 ~~d~~G~l~v~~ 121 (225)
+..-+|.|||..
T Consensus 403 ~~~~~~~IYv~G 414 (480)
T PHA02790 403 ALVFGRRLFLVG 414 (480)
T ss_pred EEEECCEEEEEC
Confidence 333457888864
No 212
>PHA03098 kelch-like protein; Provisional
Probab=84.26 E-value=33 Score=31.38 Aligned_cols=141 Identities=11% Similarity=-0.003 Sum_probs=72.5
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC------CCEEEEEEecCCCCCceeEEeccCCC-CC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESW------KFRCRRYWLKGPRQGRLESFIEHLPG-GP 106 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~g-~P 106 (225)
...+++||+.+++|+.... +..| ...+. -++ .+||.--. .+.+.+|++.++ .++... ..|. .-
T Consensus 357 ~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~-~~p~~r~ 429 (534)
T PHA03098 357 LNTVESWKPGESKWREEPP-LIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTN---KWSKGS-PLPISHY 429 (534)
T ss_pred cceEEEEcCCCCceeeCCC-cCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCC---eeeecC-CCCcccc
Confidence 4568899998888887542 2222 22232 233 58886431 257899998643 232221 1221 11
Q ss_pred CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCccc
Q 047259 107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYIS 185 (225)
Q Consensus 107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~ 185 (225)
...++--+|.||+......... .. ....+.++|+. +++...-..|...
T Consensus 430 ~~~~~~~~~~iyv~GG~~~~~~--------------------------~~--~~~~v~~yd~~~~~W~~~~~~~~~r--- 478 (534)
T PHA03098 430 GGCAIYHDGKIYVIGGISYIDN--------------------------IK--VYNIVESYNPVTNKWTELSSLNFPR--- 478 (534)
T ss_pred CceEEEECCEEEEECCccCCCC--------------------------Cc--ccceEEEecCCCCceeeCCCCCccc---
Confidence 1223334578998875421100 00 02358999987 5554332222211
Q ss_pred ceeEEEEeCCEEEEeeCC-----CCeEEEEeCCCc
Q 047259 186 FVTSAVEFEDNLYMASIQ-----SKFVGKLPLNTP 215 (225)
Q Consensus 186 ~~t~~~~~~~~Lyv~~~~-----~~~i~~~~~~~~ 215 (225)
....++..+++||+..=. .+.+.+|+..+.
T Consensus 479 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 479 INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 112234458899886422 357888877654
No 213
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=83.93 E-value=11 Score=30.93 Aligned_cols=65 Identities=17% Similarity=0.096 Sum_probs=32.9
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCEEEEE-EecCC--CCCceeEEec-cCCCCCCceEECCCCCEEEEe
Q 047259 55 EGFYFANGVALSKDENFVVVCESWKFRCRRY-WLKGP--RQGRLESFIE-HLPGGPDNINLAPDGSFWVAL 121 (225)
Q Consensus 55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~-~~~~~--~~~~~~~~~~-~~~g~Pd~i~~d~~G~l~v~~ 121 (225)
.+....+-|.++++|- ||..+.. +++++. ++++. .-......+. ..=..+-.|...++|+||.+.
T Consensus 127 ~GW~~f~~vfa~~~Gv-LY~i~~d-g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~ 195 (229)
T PF14517_consen 127 TGWNDFDAVFAGPNGV-LYAITPD-GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVK 195 (229)
T ss_dssp SSGGGEEEEEE-TTS--EEEEETT-E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-
T ss_pred CCCccceEEEeCCCcc-EEEEcCC-CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEe
Confidence 4455577888899985 8888855 477776 44431 1111112221 111235678888888888883
No 214
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=83.87 E-value=30 Score=30.52 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=46.2
Q ss_pred cccCCCCcEEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 31 LVEGKPHGQLLKYDPELEETTVL----HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 31 ~~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
++.+.+...|+.+.+.+|.+..- +..-..-.+|+|||.++.+|.+-+..+.|...++..
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 55667777888888777877653 233345679999999999999999999999998864
No 215
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.75 E-value=46 Score=31.87 Aligned_cols=136 Identities=17% Similarity=0.099 Sum_probs=89.6
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
..+-+||++.- .+.-.+...-.+-..|+|.|-.+.-|++-+-+++|..+.+.+. ++ ++..++..+-..+++.|+
T Consensus 389 DKTVRLWh~~~--~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~V-v~W~Dl~~lITAvcy~Pd 462 (712)
T KOG0283|consen 389 DKTVRLWHPGR--KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KV-VDWNDLRDLITAVCYSPD 462 (712)
T ss_pred cccEEeecCCC--cceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC---ee-EeehhhhhhheeEEeccC
Confidence 45777777653 4555556667788899999977779999999999988887542 22 222245667788999999
Q ss_pred CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEE--ECCCCCc--ccceeE
Q 047259 115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDF--NDPNATY--ISFVTS 189 (225)
Q Consensus 115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~--~~p~g~~--~~~~t~ 189 (225)
|..-|...- .|....|+..| ++.... .+.+++. -..+|+
T Consensus 463 Gk~avIGt~------------------------------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG 506 (712)
T KOG0283|consen 463 GKGAVIGTF------------------------------------NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG 506 (712)
T ss_pred CceEEEEEe------------------------------------ccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence 986655543 45566666655 554443 3332321 124777
Q ss_pred EEEe---CCEEEEeeCCCCeEEEEeCC
Q 047259 190 AVEF---EDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 190 ~~~~---~~~Lyv~~~~~~~i~~~~~~ 213 (225)
+... -.+|.|++ ...+|.+|++.
T Consensus 507 ~Q~~p~~~~~vLVTS-nDSrIRI~d~~ 532 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTS-NDSRIRIYDGR 532 (712)
T ss_pred eEecCCCCCeEEEec-CCCceEEEecc
Confidence 7543 25687776 45889999874
No 216
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=82.18 E-value=12 Score=33.16 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=38.8
Q ss_pred ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE
Q 047259 57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF 117 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l 117 (225)
..-+..++|+||+. ..++.+..+.++.++... |......+.-..++.|.+.|+-+..
T Consensus 123 ~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 123 RDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred ccchhhhhccCCCc-eeeeeeccceEEEEEecc---ceeEeeccccccccceeecchhhhh
Confidence 45688999999987 667778889999999863 3333222233456777777765433
No 217
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.85 E-value=8.3 Score=33.42 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=38.2
Q ss_pred EEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259 5 VIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEETTVLHEGFYFANGVALSKDENFVVVCESW 78 (225)
Q Consensus 5 v~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~ 78 (225)
+.+++++ .|||+-... ....-.||+++.+ +++++++.........+.+|||++++..+-++
T Consensus 286 ~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred ceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 3455554 688885541 1224578999988 77877765443333589999999866555443
No 218
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=81.52 E-value=13 Score=33.94 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=42.2
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
..||+|+|-...|+|+--..-+|+.||....... ..+.. ..| -..+++.++|.++++...
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y-~~P--lstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTY-SHP--LSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeeccccccc-ceeee-cCC--cceeeecCCceEEEeecC
Confidence 4799999998889999999999999998632111 11111 122 257888888888777665
No 219
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.48 E-value=1.4 Score=38.30 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=40.4
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
..+.|+.||..++.....+.-...+|+|+|.| +.+.|++..-...+|-||+.
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 46678888876655433333456899999999 66799999999999999986
No 220
>KOG4328 consensus WD40 protein [Function unknown]
Probab=81.45 E-value=30 Score=31.16 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEec--CCCCCceeEEe-ccCCC---CCCceEECCCCCEEEEeecCCchhhhhh
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLK--GPRQGRLESFI-EHLPG---GPDNINLAPDGSFWVALIKMNQTGVRAI 132 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~-~~~~g---~Pd~i~~d~~G~l~v~~~~~~~~~~~~~ 132 (225)
--|...|||.+.. .++....+.|..|+-. +.......... ....+ -|---++|++-++.+...-
T Consensus 371 sV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~--------- 440 (498)
T KOG4328|consen 371 SVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY--------- 440 (498)
T ss_pred eeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc---------
Confidence 3478889999987 6777788899999863 11111111111 01111 2455667776665444332
Q ss_pred hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEe
Q 047259 133 QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLP 211 (225)
Q Consensus 133 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~ 211 (225)
...|-.+|+.| +.+..+++|.-..++......+-+..+.-+...++.|+++.
T Consensus 441 ---------------------------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 441 ---------------------------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ---------------------------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 22478899885 56888888876445545444454555666677777777664
No 221
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.11 E-value=4.9 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=15.4
Q ss_pred ccccceeEEecCCCEEEEEeCCC
Q 047259 57 FYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
...-...+|+|||+.|+++....
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT
T ss_pred CccccCEEEecCCCEEEEEecCC
Confidence 34456789999999887665443
No 222
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=80.60 E-value=43 Score=33.09 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=50.2
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCc
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQ 126 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~ 126 (225)
.---.++|+||+. ++++-+..++|..|+..+ ....+++. ...+.+.|+++||-|+++.+....|.
T Consensus 130 ~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 130 SDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRT 194 (942)
T ss_pred CccceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeee-cccccccceEECCccCeeeeecCCce
Confidence 3456799999986 889999999999998764 23444444 34567899999999999998887653
No 223
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.54 E-value=45 Score=30.35 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCCeEEEEecCcc-------ccceeEEecCCCEEEEEeC--------CCCEEEEEEecC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFY-------FANGVALSKDENFVVVCES--------WKFRCRRYWLKG 89 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~-------~pnGi~~~~dg~~Lyv~~~--------~~~~I~~~~~~~ 89 (225)
..|.|+.+|.++|+..=..+... .-...++.. ..+|+... ..+.|+.++.++
T Consensus 118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCC
Confidence 36788999988776432221111 123445553 35777653 246788888764
No 224
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=79.80 E-value=42 Score=29.45 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=40.1
Q ss_pred cccCCCCcEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 31 LVEGKPHGQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 31 ~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
++.+...|.||.|...++....+..+. ...+-=.|.|||+++..... ++.|..+++.+
T Consensus 163 llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~kt 221 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPKT 221 (399)
T ss_pred EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecCC
Confidence 346778999999997664444544443 33355578899997765554 78999999874
No 225
>PHA03098 kelch-like protein; Provisional
Probab=79.64 E-value=50 Score=30.25 Aligned_cols=139 Identities=10% Similarity=-0.052 Sum_probs=71.3
Q ss_pred CcEEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeCC-----CCEEEEEEecCCCCCceeEEeccCCC-CCCc
Q 047259 37 HGQLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCESW-----KFRCRRYWLKGPRQGRLESFIEHLPG-GPDN 108 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~ 108 (225)
...+++||+.+++++.+.+-. ..-.+++.- ++ .||+.--. .+.+.+|++.++ .++... ..+. .-..
T Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~-~lp~~r~~~ 383 (534)
T PHA03098 310 VNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NN-RIYVIGGIYNSISLNTVESWKPGES---KWREEP-PLIFPRYNP 383 (534)
T ss_pred eccEEEEeCCCCeeeECCCCCcccccceEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCC---ceeeCC-CcCcCCccc
Confidence 347899999888887754211 111233332 33 48876432 346788887643 232221 1221 1111
Q ss_pred eEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccce
Q 047259 109 INLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFV 187 (225)
Q Consensus 109 i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~ 187 (225)
.+..-+|+||+....... .. ....+.++|+. +++...-..|.+. ...
T Consensus 384 ~~~~~~~~iYv~GG~~~~----------------------------~~--~~~~v~~yd~~t~~W~~~~~~p~~r--~~~ 431 (534)
T PHA03098 384 CVVNVNNLIYVIGGISKN----------------------------DE--LLKTVECFSLNTNKWSKGSPLPISH--YGG 431 (534)
T ss_pred eEEEECCEEEEECCcCCC----------------------------Cc--ccceEEEEeCCCCeeeecCCCCccc--cCc
Confidence 222236789997653110 00 03468899987 4554332333332 112
Q ss_pred eEEEEeCCEEEEeeCC--------CCeEEEEeCCC
Q 047259 188 TSAVEFEDNLYMASIQ--------SKFVGKLPLNT 214 (225)
Q Consensus 188 t~~~~~~~~Lyv~~~~--------~~~i~~~~~~~ 214 (225)
.++..+++||+..-. .+.+.+|+..+
T Consensus 432 -~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 432 -CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred -eEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 234568899986421 12377777654
No 226
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=79.54 E-value=38 Score=28.90 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCCcEEEEEeCCC-CeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCce---eEEeccCCCCCCc
Q 047259 34 GKPHGQLLKYDPEL-EETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRL---ESFIEHLPGGPDN 108 (225)
Q Consensus 34 ~~~~g~v~~~d~~~-~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~---~~~~~~~~g~Pd~ 108 (225)
....|.+..+|.-+ .++..+.=.-.+---.|++|.|+ ..-+---+|....|++... ..+.. +.+. +..++-.-
T Consensus 73 aSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylSc 150 (343)
T KOG0286|consen 73 ASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSC 150 (343)
T ss_pred eccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC-eEEecCcCceeEEEecccccccccceeeeeec-CccceeEE
Confidence 34489999999643 34444433445677899999997 4455555677777777521 12222 2222 22345556
Q ss_pred eEECCCCCEEEEeec
Q 047259 109 INLAPDGSFWVALIK 123 (225)
Q Consensus 109 i~~d~~G~l~v~~~~ 123 (225)
+.+-.|+.|..+...
T Consensus 151 C~f~dD~~ilT~SGD 165 (343)
T KOG0286|consen 151 CRFLDDNHILTGSGD 165 (343)
T ss_pred EEEcCCCceEecCCC
Confidence 666667777665544
No 227
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=79.04 E-value=8.6 Score=21.11 Aligned_cols=31 Identities=23% Similarity=0.041 Sum_probs=22.6
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCEEEEEE
Q 047259 55 EGFYFANGVALSKDENFVVVCESWKFRCRRYW 86 (225)
Q Consensus 55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~ 86 (225)
......+.|+++|+++ ++++-..++.|..++
T Consensus 9 ~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 3446678999999987 556666677877664
No 228
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.63 E-value=41 Score=28.76 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=39.0
Q ss_pred CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259 37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG 115 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G 115 (225)
.|.||+=......++.+... ...-+.+.-++||+.+.|+.. +.+++-.-.+ ....+.+.......-.+|.++++|
T Consensus 123 ~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~--G~~~~s~~~G--~~~w~~~~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 123 RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR--GNFYSSWDPG--QTTWQPHNRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT--SSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS
T ss_pred CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc--ccEEEEecCC--CccceEEccCccceehhceecCCC
Confidence 45666544333356655433 344566778899975555544 4555433222 122333332233455789999999
Q ss_pred CEEEEeec
Q 047259 116 SFWVALIK 123 (225)
Q Consensus 116 ~l~v~~~~ 123 (225)
.||+...+
T Consensus 199 ~lw~~~~G 206 (302)
T PF14870_consen 199 NLWMLARG 206 (302)
T ss_dssp -EEEEETT
T ss_pred CEEEEeCC
Confidence 99997744
No 229
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=78.61 E-value=71 Score=31.88 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=38.0
Q ss_pred CCCcEEEEE----eCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEE
Q 047259 35 KPHGQLLKY----DPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYW 86 (225)
Q Consensus 35 ~~~g~v~~~----d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~ 86 (225)
...|.|+.+ ++.+..++.+..-..+-..++||||+..|.++ ++.+.|..+.
T Consensus 94 ~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt 148 (928)
T PF04762_consen 94 LASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV-TGEGNLLLMT 148 (928)
T ss_pred ECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE-eCCCEEEEEe
Confidence 357888888 77777888877667788899999999855444 4556776654
No 230
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=77.95 E-value=7 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=32.1
Q ss_pred CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCC
Q 047259 107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNAT 182 (225)
Q Consensus 107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~ 182 (225)
..+++.+||+|+++....... .. ....|.|++++|.+-..+.. +|.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~---------------------------~~--~~~~l~Rln~DGsLDttFg~-~G~ 49 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSS---------------------------GN--NDFVLARLNADGSLDTTFGT-GGK 49 (55)
T ss_pred EEEEECCCCcEEEEEEeecCC---------------------------Cc--ccEEEEEECCCCCccCCcCC-CcE
Confidence 367888999999998752100 01 15689999999999877754 443
No 231
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=77.51 E-value=44 Score=28.47 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=69.7
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCC-CCceE-------------E----CCCCCEEEE
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGG-PDNIN-------------L----APDGSFWVA 120 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~-Pd~i~-------------~----d~~G~l~v~ 120 (225)
..|.|...++|+ ++|+.+..+.|+.++.+++ .. ++. +.|. ...+. + +.+|.|-+=
T Consensus 145 HiNsV~~~~~G~-yLiS~R~~~~i~~I~~~tG---~I-~W~--lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 145 HINSVDKDDDGD-YLISSRNTSTIYKIDPSTG---KI-IWR--LGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred EeeeeeecCCcc-EEEEecccCEEEEEECCCC---cE-EEE--eCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEE
Confidence 358999999998 6799999999999996542 11 111 1110 01111 1 133444444
Q ss_pred eecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEE---E-CCCCCccccee-EE-EEeC
Q 047259 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDF---N-DPNATYISFVT-SA-VEFE 194 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~---~-~p~g~~~~~~t-~~-~~~~ 194 (225)
+...... .....+.+.|+.+|+..+.+..+ . .|.+- ....- .+ .-.+
T Consensus 218 DN~~~~~--------------------------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~-~s~~~G~~Q~L~n 270 (299)
T PF14269_consen 218 DNANSDF--------------------------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGF-YSPSQGSAQRLPN 270 (299)
T ss_pred cCCCCCC--------------------------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcc-cccCCCcceECCC
Confidence 3321100 00111388999999987654443 3 23331 11111 11 1246
Q ss_pred CEEEEeeCCCCeEEEEeCCCc
Q 047259 195 DNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 195 ~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
|.++|+.-..+++..+..+++
T Consensus 271 Gn~li~~g~~g~~~E~~~~G~ 291 (299)
T PF14269_consen 271 GNVLIGWGNNGRISEFTPDGE 291 (299)
T ss_pred CCEEEecCCCceEEEECCCCC
Confidence 889999999999999988775
No 232
>PHA02790 Kelch-like protein; Provisional
Probab=77.32 E-value=57 Score=29.66 Aligned_cols=81 Identities=6% Similarity=-0.013 Sum_probs=43.2
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCC-CCCceEE
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA--NGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPG-GPDNINL 111 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p--nGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~i~~ 111 (225)
...+++||+.++++..+.+ +..| +.-+..-++ .||+.--. ...+.+|++..+ .+.... ..+. .-...+.
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~~~~-~iYviGG~~~~~sve~ydp~~n---~W~~~~-~l~~~r~~~~~~ 359 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPP-MNSPRLYASGVPANN-KLYVVGGLPNPTSVERWFHGDA---AWVNMP-SLLKPRCNPAVA 359 (480)
T ss_pred CCeEEEEECCCCEEEECCC-CCchhhcceEEEECC-EEEEECCcCCCCceEEEECCCC---eEEECC-CCCCCCcccEEE
Confidence 3468999998888877642 2211 222222344 59987542 246888887532 333222 1221 1122233
Q ss_pred CCCCCEEEEeec
Q 047259 112 APDGSFWVALIK 123 (225)
Q Consensus 112 d~~G~l~v~~~~ 123 (225)
.-+|+||+....
T Consensus 360 ~~~g~IYviGG~ 371 (480)
T PHA02790 360 SINNVIYVIGGH 371 (480)
T ss_pred EECCEEEEecCc
Confidence 346899998764
No 233
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=76.95 E-value=10 Score=33.07 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=37.8
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIK 123 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~ 123 (225)
.--|-+.++. + +.|+.++...|..+++++. .|+..+.|--.|||.-. +|++.|+...
T Consensus 321 AaVNvVdfd~--k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 321 AAVNVVDFDD--K-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred hheeeecccc--c-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecCC
Confidence 3456666653 3 7788888888888877531 24444556677888876 5777777655
No 234
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.39 E-value=60 Score=29.44 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=20.8
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+-+.|+|+++.++++-+....+..+++++
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 467889999998888877654444445544
No 235
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=75.92 E-value=21 Score=33.02 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=51.3
Q ss_pred CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259 37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP 113 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~ 113 (225)
+-++|.+....++.+++.. +-...|-+.|+|.|+++.++.-. .+.+.-||.+- ................+..||
T Consensus 471 tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~---a~~k~~~~~eh~~at~veWDP 547 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY---ADLKDTASPEHFAATEVEWDP 547 (698)
T ss_pred ceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch---hhhhhccCccccccccceECC
Confidence 3456666644445444321 12678999999999988887754 55666676641 111111100112357899999
Q ss_pred CCCEEEEeec
Q 047259 114 DGSFWVALIK 123 (225)
Q Consensus 114 ~G~l~v~~~~ 123 (225)
.|+..|+...
T Consensus 548 tGRYvvT~ss 557 (698)
T KOG2314|consen 548 TGRYVVTSSS 557 (698)
T ss_pred CCCEEEEeee
Confidence 9998888765
No 236
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=75.71 E-value=51 Score=28.25 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=41.0
Q ss_pred cCCCCcEEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 33 EGKPHGQLLKYDPELEETTVLHEGFYF-ANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 33 ~~~~~g~v~~~d~~~~~~~~~~~~~~~-pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+..++.|-.+|+..++..-...+..- -.||.++++|. -..+++..+.|.+++...
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecc
Confidence 344566777888765566655555544 47999999998 557888999999988764
No 237
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=75.44 E-value=10 Score=34.95 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 34 GKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
+-.+|.|..||.. ..++..+...-.|+-++|+|+|. +++.-+..+.|..||+.
T Consensus 277 GC~DgSiiLyD~~-~~~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 277 GCEDGSIILYDTT-RGVTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCCeEEEEEcC-CCeeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence 3457889999986 45666666667899999999997 66666677899999985
No 238
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=75.31 E-value=33 Score=29.70 Aligned_cols=32 Identities=6% Similarity=-0.161 Sum_probs=27.6
Q ss_pred ccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 57 FYFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
...-.-+.|.+||+.||...+...+|..+|+.
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 34456688999999999999999999999986
No 239
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=75.27 E-value=36 Score=29.23 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=29.0
Q ss_pred ceEEEEECCCCcEEEEEECCCCC---c---ccc--eeEEEEeCCEEEEeeC-----------CCCeEEEEeCCCccccc
Q 047259 160 GARIVKVDTHGKIIMDFNDPNAT---Y---ISF--VTSAVEFEDNLYMASI-----------QSKFVGKLPLNTPEAEL 219 (225)
Q Consensus 160 ~~~V~~~d~~G~~~~~~~~p~g~---~---~~~--~t~~~~~~~~Lyv~~~-----------~~~~i~~~~~~~~~~~~ 219 (225)
...+..+|.+|+++..+...... . ++. .+.+...++.+|++.. ...-++.+++.+...+.
T Consensus 114 ~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~ 192 (333)
T PF13970_consen 114 FPKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVKW 192 (333)
T ss_dssp GTEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EEE
T ss_pred cceEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEEE
Confidence 35789999999999888653321 0 111 1233446778888764 22346677777666553
No 240
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.23 E-value=6.9 Score=20.84 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=10.9
Q ss_pred CcEEEEEeCCCCeE
Q 047259 37 HGQLLKYDPELEET 50 (225)
Q Consensus 37 ~g~v~~~d~~~~~~ 50 (225)
.|.++.+|.++|+.
T Consensus 15 ~g~l~a~d~~~G~~ 28 (33)
T smart00564 15 DGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEEcccCcE
Confidence 57899999877764
No 241
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=75.21 E-value=28 Score=30.97 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=63.5
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
.|+++.++++-|+|.+. .|.|-.+|....+-+.++ ....-+..+.|.|... |.++-+..+-
T Consensus 184 RdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnl 245 (464)
T KOG0284|consen 184 RDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNL 245 (464)
T ss_pred heeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCce
Confidence 47888888888888776 677777776433333333 3455688999999876 8788888886
Q ss_pred EEEEEecCC-CCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 82 CRRYWLKGP-RQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 82 I~~~~~~~~-~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
|.-+|+..+ .+..... ....--++.+.++|+++.+...
T Consensus 246 VKlWDprSg~cl~tlh~----HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHG----HKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred eEeecCCCcchhhhhhh----ccceEEEEEEcCCCCeeEEccC
Confidence 666676532 1111111 1112346777788877776655
No 242
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=74.91 E-value=44 Score=32.31 Aligned_cols=81 Identities=9% Similarity=0.027 Sum_probs=49.8
Q ss_pred ccCCCCcEEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCEEEEEEecCC----CCCceeEEec----cC
Q 047259 32 VEGKPHGQLLKYDPELEETTVLHEGFYF-ANGVALSKDENFVVVCESWKFRCRRYWLKGP----RQGRLESFIE----HL 102 (225)
Q Consensus 32 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~-pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~----~~~~~~~~~~----~~ 102 (225)
+.+...|.+.++...+++ +.+..-+.. --+|+++||++ +|-.-..+++|..+...+- .+........ ..
T Consensus 267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred eecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 345556667777776777 444444444 47999999998 7777777899998876421 1111111100 12
Q ss_pred CCCCCceEECCC
Q 047259 103 PGGPDNINLAPD 114 (225)
Q Consensus 103 ~g~Pd~i~~d~~ 114 (225)
.+++.++++|+.
T Consensus 345 ~~l~t~~~idpr 356 (792)
T KOG1963|consen 345 QSLTTGVSIDPR 356 (792)
T ss_pred cccceeEEEcCC
Confidence 246778899984
No 243
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.77 E-value=6.8 Score=22.06 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=11.3
Q ss_pred CcEEEEEeCCCCeE
Q 047259 37 HGQLLKYDPELEET 50 (225)
Q Consensus 37 ~g~v~~~d~~~~~~ 50 (225)
.|.|+.+|.++|++
T Consensus 9 ~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 9 DGYLYALDAKTGKV 22 (38)
T ss_dssp TSEEEEEETTTTSE
T ss_pred CCEEEEEECCCCCE
Confidence 68899999888764
No 244
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.41 E-value=12 Score=31.44 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=45.3
Q ss_pred CcEEEcCCCc--EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc---------cccceeEEecCCCE
Q 047259 3 NDVIEASDGS--LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF---------YFANGVALSKDENF 71 (225)
Q Consensus 3 ndv~~~~dG~--iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---------~~pnGi~~~~dg~~ 71 (225)
.++.+-++|+ |-++|.+ +|..........|++.=+. +++++.+.+.. .-..|+++- ||+
T Consensus 77 Sairf~~dG~~fiav~DtG------~wfeg~i~rDa~grl~Gl~--dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr-dG~- 146 (340)
T COG4246 77 SAIRFLPDGSQFIAVTDTG------HWFEGKIQRDANGRLAGLT--DGRLTPMRDLDGQPIQEKWEVDAEGLAVR-DGD- 146 (340)
T ss_pred heeEeccCCceeEEEeecC------ceEEEEEEeccCCCccccc--ccceeecccCCCCCCcchhccccccceEe-cCc-
Confidence 3677788885 4555665 3443222222333333222 24444443211 135799997 777
Q ss_pred EEEEeCCCCEEEEEEecC
Q 047259 72 VVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 72 Lyv~~~~~~~I~~~~~~~ 89 (225)
.+|+-..++||+.|...+
T Consensus 147 ~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 147 ALVSFERDHRIWIYPVPP 164 (340)
T ss_pred eEEEeeccceeEEeccCC
Confidence 789999999999998764
No 245
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.25 E-value=13 Score=20.93 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=16.9
Q ss_pred EEeCCEEEEeeCCCCeEEEEeCC
Q 047259 191 VEFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 191 ~~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
+..++.||+++. .+.+..+++.
T Consensus 18 ~v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE-T-TSEEEEEETT
T ss_pred EEECCEEEEEcC-CCEEEEEeCC
Confidence 557899999986 6888888765
No 246
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=73.64 E-value=53 Score=27.51 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=48.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS 116 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~ 116 (225)
.|.+-.+|..+-......+.-+--|.+++.|+...|++++. ++.|+..|+..+. - .+.++......-..+++++||.
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~-c-~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENS-C-THELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCc-c-ccccCCCCCcceeeEEEcCCCc
Confidence 45555555543334444444455699999999998988885 4788888885431 0 1111111111234566777776
Q ss_pred EEEEeec
Q 047259 117 FWVALIK 123 (225)
Q Consensus 117 l~v~~~~ 123 (225)
+.++...
T Consensus 181 ml~a~nn 187 (311)
T KOG0315|consen 181 MLAAANN 187 (311)
T ss_pred EEEEecC
Confidence 6666554
No 247
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=73.62 E-value=72 Score=29.34 Aligned_cols=111 Identities=12% Similarity=0.090 Sum_probs=70.1
Q ss_pred eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEe-ccC-CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHH
Q 047259 63 VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFI-EHL-PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWK 140 (225)
Q Consensus 63 i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~-~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~ 140 (225)
+.+++-.+.|.++.+.++.|..+|..+- ...|- ... ..-..||++.+-....++..+-
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~---------------- 229 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGM----SPIFHASEAHSAPCRGICFSPSNEALLVSVGY---------------- 229 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCC----CcccchhhhccCCcCcceecCCccceEEEecc----------------
Confidence 4567888888899999999999998752 11221 111 1224799999977654444441
Q ss_pred HHHhhhhhhhhhccCCCCcceEEEEECCCCcE-EEEE--ECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259 141 LLQAYPELINLLIPLGNDAGARIVKVDTHGKI-IMDF--NDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 141 ~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~-~~~~--~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
.-+|..||..-+. ...+ ..| .+.+++ ..|...++....++|..|++....
T Consensus 230 -------------------Dkki~~yD~~s~~s~~~l~y~~P-------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 230 -------------------DKKINIYDIRSQASTDRLTYSHP-------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred -------------------cceEEEeecccccccceeeecCC-------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 3467778765332 2222 222 233344 467777888888999999998877
Q ss_pred ccc
Q 047259 217 AEL 219 (225)
Q Consensus 217 ~~~ 219 (225)
+-+
T Consensus 284 ~Pv 286 (673)
T KOG4378|consen 284 APV 286 (673)
T ss_pred CCc
Confidence 654
No 248
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.39 E-value=41 Score=33.16 Aligned_cols=53 Identities=17% Similarity=-0.012 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEE-E-EEeCC---CCEEEEEEecCC
Q 047259 38 GQLLKYDPELEETTVL-HEGFYFANGVALSKDENFV-V-VCESW---KFRCRRYWLKGP 90 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~L-y-v~~~~---~~~I~~~~~~~~ 90 (225)
++|...|.+....+.+ .+.-.-.--.+|||||+.| | ++-.+ .-.|++-++++.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 4666666653344433 3333333457899999988 5 33333 446999888753
No 249
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=73.17 E-value=59 Score=27.85 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=41.7
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
..-+-+.|+|+|. .+++-...++|+.++..+. -.+.-+.- ...+.--++...+||+..++...
T Consensus 48 geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gd-ceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 48 GEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGD-CENFWVLK-GHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred ceEEEEEECCCCC-eEeecCCcceEEEEecccc-ccceeeec-cccceeEeeeeccCCCEEEEecC
Confidence 4457899999886 8888888899998887542 11111111 22334557777888887776655
No 250
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=72.63 E-value=76 Score=28.91 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=17.3
Q ss_pred cEEEEEeCCCCeEEEE--ecC--ccccceeEEecCCCEEEEEe
Q 047259 38 GQLLKYDPELEETTVL--HEG--FYFANGVALSKDENFVVVCE 76 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~--~~~--~~~pnGi~~~~dg~~Lyv~~ 76 (225)
..+..+|.. |++... ... ..+.+.+...|+|+.|+++.
T Consensus 167 ~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 167 NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 456677765 543222 222 24567888889988777666
No 251
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=72.20 E-value=65 Score=27.96 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=25.0
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
....+-|-..+++||..+ ++.+..+.|..++..
T Consensus 346 GHsSyvn~a~ft~dG~~i-isaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHI-ISASSDGTVKVWHGK 378 (508)
T ss_pred CccccccceEEcCCCCeE-EEecCCccEEEecCc
Confidence 345688999999999854 666677888777765
No 252
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.10 E-value=76 Score=29.37 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC--CCCceEE
Q 047259 35 KPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG--GPDNINL 111 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g--~Pd~i~~ 111 (225)
...|.|..+|..+|++.=..+ ....-.+.... .+..+|+ .+.++.++.||.+++ + .++-..+++ ...=|++
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~-g~~~G~l~a~D~~TG---e-~lw~~~~g~~~~a~P~ty 511 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFY-GTLEGYFKAFDAKTG---E-ELWKFKTGSGIVGPPVTY 511 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEE-ECCCCeEEEEECCCC---C-EeEEEeCCCCceecCEEE
Confidence 357889999998886543222 12111233333 4454444 566789999998753 2 122212222 2233554
Q ss_pred CCCCCEEEEeec
Q 047259 112 APDGSFWVALIK 123 (225)
Q Consensus 112 d~~G~l~v~~~~ 123 (225)
..+|+.||+...
T Consensus 512 ~~~G~qYv~~~~ 523 (527)
T TIGR03075 512 EQDGKQYVAVLS 523 (527)
T ss_pred EeCCEEEEEEEe
Confidence 567999998754
No 253
>smart00284 OLF Olfactomedin-like domains.
Probab=71.96 E-value=58 Score=27.20 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=68.3
Q ss_pred CcEEEEEeCCCCeEE--EEecCc----cc------cceeEEecCCCEEEEE---eCCCCEEE--EEEecCCCCCceeEEe
Q 047259 37 HGQLLKYDPELEETT--VLHEGF----YF------ANGVALSKDENFVVVC---ESWKFRCR--RYWLKGPRQGRLESFI 99 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~--~~~~~~----~~------pnGi~~~~dg~~Lyv~---~~~~~~I~--~~~~~~~~~~~~~~~~ 99 (225)
+..|.++|..++.+. ..++.- .+ .+.|.|.-|++-|||- +...+.|. ++++.+ +.-.+.+-
T Consensus 93 s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t--L~ve~tW~ 170 (255)
T smart00284 93 SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT--LTIENTWI 170 (255)
T ss_pred CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc--ceEEEEEE
Confidence 567999999877664 222221 11 2336665566556655 33445555 555543 22223332
Q ss_pred ccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEE-EEECCCCcEEEE--E
Q 047259 100 EHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARI-VKVDTHGKIIMD--F 176 (225)
Q Consensus 100 ~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V-~~~d~~G~~~~~--~ 176 (225)
...+-.--+-+|=-=|.||++..... . ..+| ..+|......+. +
T Consensus 171 T~~~k~sa~naFmvCGvLY~~~s~~~------------------------------~---~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 171 TTYNKRSASNAFMICGILYVTRSLGS------------------------------K---GEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred cCCCcccccccEEEeeEEEEEccCCC------------------------------C---CcEEEEEEECCCCccceeee
Confidence 22221111222223378888875310 1 2333 678876432222 3
Q ss_pred ECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeC
Q 047259 177 NDPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPL 212 (225)
Q Consensus 177 ~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~ 212 (225)
..++- ....+.+- +.+.+||+=+ ++++..+++
T Consensus 218 ~f~n~--y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 218 PFENM--YEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred eeccc--cccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 33321 33455554 4689999865 556666654
No 254
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=71.25 E-value=45 Score=29.24 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=43.3
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEe-CCCC-eEEEEecCc--cccceeEEecCCCEEEEEeCCC
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYD-PELE-ETTVLHEGF--YFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d-~~~~-~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
-+++.++|.+..|-+- .|.|.|+- ..+| ++...=.+. ..-..|+|++|+. +..+.+.+
T Consensus 178 alafs~~G~llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~T 239 (391)
T KOG2110|consen 178 ALAFSPDGTLLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNT 239 (391)
T ss_pred EEEECCCCCEEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCC
Confidence 3677888888887664 45554433 1223 333332332 2346899999998 55666778
Q ss_pred CEEEEEEecC
Q 047259 80 FRCRRYWLKG 89 (225)
Q Consensus 80 ~~I~~~~~~~ 89 (225)
..|..|.++.
T Consensus 240 eTVHiFKL~~ 249 (391)
T KOG2110|consen 240 ETVHIFKLEK 249 (391)
T ss_pred CeEEEEEecc
Confidence 8999998863
No 255
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.00 E-value=77 Score=28.26 Aligned_cols=84 Identities=10% Similarity=-0.099 Sum_probs=43.4
Q ss_pred CcEEEEEeCCCCe-EEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CC---CCCCceE
Q 047259 37 HGQLLKYDPELEE-TTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LP---GGPDNIN 110 (225)
Q Consensus 37 ~g~v~~~d~~~~~-~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~---g~Pd~i~ 110 (225)
.|++++-...... ++.+. .....-.++.+.+|++ +|++-.. +.|++-.-++. ......|... .+ ....++.
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g~~-G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~ 334 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLTRG-GGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVG 334 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEeCC-ceEEEecCCCC-cccccceeecccCCCCcceEEEE
Confidence 3566654433222 34442 2334557888999987 5555433 55655543331 1100122211 11 1245677
Q ss_pred ECCCCCEEEEeec
Q 047259 111 LAPDGSFWVALIK 123 (225)
Q Consensus 111 ~d~~G~l~v~~~~ 123 (225)
+.+++.+|++...
T Consensus 335 ~~~d~~~~a~G~~ 347 (398)
T PLN00033 335 YRSKKEAWAAGGS 347 (398)
T ss_pred EcCCCcEEEEECC
Confidence 8888999988754
No 256
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.04 E-value=1e+02 Score=29.37 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=67.5
Q ss_pred CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcC
Q 047259 56 GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSC 135 (225)
Q Consensus 56 ~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~ 135 (225)
....-.|+++-+++. |++.++.+.|.+.+++|. -...... ...+-.-|.+...+.+.|+....|
T Consensus 178 HtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~ge---~l~~~~g-htn~vYsis~~~~~~~Ivs~gEDr---------- 241 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDGE---VLLEMHG-HTNFVYSISMALSDGLIVSTGEDR---------- 241 (745)
T ss_pred chhheeeeEEecCCC--eEeecCCceEEEEeccCc---eeeeeec-cceEEEEEEecCCCCeEEEecCCc----------
Confidence 344567899988864 567777888988888653 1111111 112334455556667888877733
Q ss_pred hhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259 136 PDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
.-+|+..+ .....+..|.-+ -.+..+..+|.|+++.. .++|.++.-+
T Consensus 242 ------------------------tlriW~~~---e~~q~I~lPtts---iWsa~~L~NgDIvvg~S-DG~VrVfT~~ 288 (745)
T KOG0301|consen 242 ------------------------TLRIWKKD---ECVQVITLPTTS---IWSAKVLLNGDIVVGGS-DGRVRVFTVD 288 (745)
T ss_pred ------------------------eEEEeecC---ceEEEEecCccc---eEEEEEeeCCCEEEecc-CceEEEEEec
Confidence 34555544 777888887533 23333446888888864 4677777554
No 257
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=68.59 E-value=83 Score=27.67 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=80.7
Q ss_pred CCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCC-CceEEC
Q 047259 35 KPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGP-DNINLA 112 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P-d~i~~d 112 (225)
.-.|.|..+...+|..+..+. ...--.=+.|.|.+. ++.+-+..+.||.+.+... +...+|..+ ..| .-=.+-
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~Gh--~~~ct~G~f~ 199 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSGH--NSPCTCGEFI 199 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecCC--CCCccccccc
Confidence 446777777666665544432 222223366788776 6677778899999987532 445555532 111 111334
Q ss_pred CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCc-----ccc
Q 047259 113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATY-----ISF 186 (225)
Q Consensus 113 ~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~-----~~~ 186 (225)
++|...++... .+.|.+.++. |+++-.+...++.. +..
T Consensus 200 pdGKr~~tgy~------------------------------------dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 200 PDGKRILTGYD------------------------------------DGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred CCCceEEEEec------------------------------------CceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 55766665555 5677888875 88777776322211 222
Q ss_pred eeEEE---EeCCEEEEeeCCCCeEEEEeCC
Q 047259 187 VTSAV---EFEDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 187 ~t~~~---~~~~~Lyv~~~~~~~i~~~~~~ 213 (225)
.+.+. -.++..++.+..+..|..+...
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ccceeEeccCCccEEEEccccceEEEecCC
Confidence 22222 2367888888888888887764
No 258
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=68.27 E-value=81 Score=27.42 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=38.2
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEec-----C-C--CCCceeEEeccCCCCCCceEECCCCCEEEEeecC
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLK-----G-P--RQGRLESFIEHLPGGPDNINLAPDGSFWVALIKM 124 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~-----~-~--~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~ 124 (225)
-.-.+|+++.++ .++.+..+.+..++.+ + + .+.....+.....+.|-.+++.|.|.++.+.++.
T Consensus 281 V~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs 352 (420)
T KOG2096|consen 281 VLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS 352 (420)
T ss_pred eeeeeeCCCcce-eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC
Confidence 456788888764 4677777766655543 1 0 0111111111134568889999999998888773
No 259
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.40 E-value=1e+02 Score=30.09 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE----------------------CCCCCEEEEeecCCc
Q 047259 69 ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL----------------------APDGSFWVALIKMNQ 126 (225)
Q Consensus 69 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~----------------------d~~G~l~v~~~~~~~ 126 (225)
++.||++.. .++|+.+|.++++.--....-......+...++ ..++++|+....
T Consensus 194 gg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D--- 269 (764)
T TIGR03074 194 GDTLYLCTP-HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD--- 269 (764)
T ss_pred CCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC---
Q ss_pred hhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCc-------------ccceeEEEE
Q 047259 127 TGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATY-------------ISFVTSAVE 192 (225)
Q Consensus 127 ~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~-------------~~~~t~~~~ 192 (225)
+.++.+|.+ |++...+.. +|++ ....+.-+.
T Consensus 270 ----------------------------------g~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V 314 (764)
T TIGR03074 270 ----------------------------------ARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLV 314 (764)
T ss_pred ----------------------------------CeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEE
Q ss_pred eCCEEEEeeC---------CCCeEEEEeCCC
Q 047259 193 FEDNLYMASI---------QSKFVGKLPLNT 214 (225)
Q Consensus 193 ~~~~Lyv~~~---------~~~~i~~~~~~~ 214 (225)
.++.+|++.. .++.|..|++.+
T Consensus 315 ~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 315 AGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred ECCEEEEEecccccccccCCCcEEEEEECCC
No 260
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=66.02 E-value=41 Score=32.67 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=45.2
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
||+++.+||+=.++-+- .+.|-.||..++.+-=...-..-+-.+.++|+|++|-.+..+.+.|
T Consensus 580 td~~FS~DgrWlisasm-----------------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASM-----------------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGI 642 (910)
T ss_pred eeeEeCCCCcEEEEeec-----------------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceE
Confidence 67888888874444322 4677777766554221112223456899999999998888888888
Q ss_pred EEEEe
Q 047259 83 RRYWL 87 (225)
Q Consensus 83 ~~~~~ 87 (225)
+.+.-
T Consensus 643 ylWsN 647 (910)
T KOG1539|consen 643 YLWSN 647 (910)
T ss_pred EEEEc
Confidence 87754
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=65.40 E-value=1.2e+02 Score=28.22 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=51.4
Q ss_pred cEEEEEeCCCCeEEEEecCccccceeEEecCCCEE-EEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCC-ceEECCCC
Q 047259 38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFV-VVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPD-NINLAPDG 115 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~L-yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd-~i~~d~~G 115 (225)
-.||.++.++.++.+-....+--..+.|+++++.. .|--.+..++..|+++++ + +| ..+..|. -+.+.+.|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~-v~--df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----P-VF--DFPEGPRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----E-eE--eCCCCCccceEECCCC
Confidence 36788877633344433444445889999999855 344456778889988753 2 23 2444565 57888999
Q ss_pred CE-EEEeecC
Q 047259 116 SF-WVALIKM 124 (225)
Q Consensus 116 ~l-~v~~~~~ 124 (225)
++ .+|.++.
T Consensus 324 ~ii~lAGFGN 333 (566)
T KOG2315|consen 324 NIILLAGFGN 333 (566)
T ss_pred CEEEEeecCC
Confidence 95 6666663
No 262
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=64.76 E-value=21 Score=30.89 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE---EEEe--cCccccceeEEecCCCEEEEEeCCCCEEEE
Q 047259 10 DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET---TVLH--EGFYFANGVALSKDENFVVVCESWKFRCRR 84 (225)
Q Consensus 10 dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~---~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~ 84 (225)
.+.|||-- |....|..-+..+...|.||.+|.++.+- +.+. .....-.-.+++.||. +.|.....+.|+|
T Consensus 305 ~c~iWfir----f~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 305 MCDIWFIR----FAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWR 379 (385)
T ss_pred ccceEEEE----EeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEE
Confidence 55677763 33334433344567788999999764332 2222 1233446788999997 5566666789999
Q ss_pred EEe
Q 047259 85 YWL 87 (225)
Q Consensus 85 ~~~ 87 (225)
++.
T Consensus 380 wdr 382 (385)
T KOG1034|consen 380 WDR 382 (385)
T ss_pred EEe
Confidence 985
No 263
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=64.73 E-value=23 Score=19.80 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE
Q 047259 10 DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL 53 (225)
Q Consensus 10 dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 53 (225)
||++|.|-... | ....|.|+++++. +..+.+
T Consensus 1 dg~lYGTT~~G--G----------~~~~GTvf~~~~~-g~~t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGG--G----------ASGFGTLYRLSTA-GGTTVL 31 (34)
T ss_pred CCcEEEEcccC--C----------CCCceeEEEEcCC-CCeEEE
Confidence 58899998741 1 1347899999987 554544
No 264
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=64.59 E-value=25 Score=32.44 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCc--EEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259 2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHG--QLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW 78 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g--~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~ 78 (225)
+|..++.+||+-..|.+. +| +|+-||.. ++.-+. .-+..---++|||||+++ ++--.
T Consensus 293 in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPDGKyI-vtGGE 352 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPDGKYI-VTGGE 352 (636)
T ss_pred ccceeEcCCCceEEEEec-----------------CceEEEeeccHH--HHHHHHHhhccceEEEEEcCCccEE-EecCC
Confidence 567777888877777665 34 45555432 221111 223344578999999833 44333
Q ss_pred CCEEEEEEe
Q 047259 79 KFRCRRYWL 87 (225)
Q Consensus 79 ~~~I~~~~~ 87 (225)
+.-|..|..
T Consensus 353 DDLVtVwSf 361 (636)
T KOG2394|consen 353 DDLVTVWSF 361 (636)
T ss_pred cceEEEEEe
Confidence 444444443
No 265
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=63.67 E-value=1e+02 Score=29.20 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc-ceeEEec-CCCEEEEEeCCCCEEEEEEec
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA-NGVALSK-DENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~-dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
.|.|+.|+.++++...+...+..+ ...+++| +.+.|.|+.+ +++|+-|+++
T Consensus 496 ~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats-~nQv~efdi~ 548 (691)
T KOG2048|consen 496 RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATS-NNQVFEFDIE 548 (691)
T ss_pred cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEec-CCeEEEEecc
Confidence 689999999888777766444332 3455553 3345766665 5799999985
No 266
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=63.51 E-value=89 Score=26.24 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=41.3
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS 116 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~ 116 (225)
.+.|-.||-.+++....+.--..++.+.+++||+.|-+++- ..|.-.+++. .+....+ ..|-.-..-.+.|+-.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g--ssV~Fwdaks--f~~lKs~--k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG--SSVKFWDAKS--FGLLKSY--KMPCNVESASLHPKKE 237 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC--ceeEEecccc--ccceeec--cCccccccccccCCCc
Confidence 34444455555544443444456789999999986666553 3555555432 2221111 1221112223445557
Q ss_pred EEEEeec
Q 047259 117 FWVALIK 123 (225)
Q Consensus 117 l~v~~~~ 123 (225)
+||+...
T Consensus 238 ~fVaGge 244 (334)
T KOG0278|consen 238 FFVAGGE 244 (334)
T ss_pred eEEecCc
Confidence 7777655
No 267
>PRK13684 Ycf48-like protein; Provisional
Probab=63.49 E-value=98 Score=26.68 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=42.4
Q ss_pred CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259 37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG 115 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G 115 (225)
.|.|++=+.....++.+..+ ....+++++.+++..+.+. ..+.+++-.-++. ...+...........++++.++|
T Consensus 151 ~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g--~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 151 VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS--SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred cceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe--CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCC
Confidence 34555544332345554333 2345788888887533333 3456666422221 12222211122345678888888
Q ss_pred CEEEEeec
Q 047259 116 SFWVALIK 123 (225)
Q Consensus 116 ~l~v~~~~ 123 (225)
++|++...
T Consensus 227 ~~~~vg~~ 234 (334)
T PRK13684 227 NLWMLARG 234 (334)
T ss_pred CEEEEecC
Confidence 88887543
No 268
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=63.45 E-value=25 Score=31.14 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCC
Q 047259 37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDEN 70 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~ 70 (225)
...++.+|...|.+.... ++..+++|.+|+|-++
T Consensus 144 dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 556677777667766654 4567999999999764
No 269
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=63.07 E-value=59 Score=29.52 Aligned_cols=89 Identities=10% Similarity=0.164 Sum_probs=51.9
Q ss_pred hcccCCCCcEEEEEeCCCCeEEEEec-----------CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEE
Q 047259 30 DLVEGKPHGQLLKYDPELEETTVLHE-----------GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESF 98 (225)
Q Consensus 30 ~~~~~~~~g~v~~~d~~~~~~~~~~~-----------~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~ 98 (225)
++|...+...|..+-..+|.++..-. ...--++|+++++|+ .-++.-.+++|-.+|+..- .++...
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~--~ql~t~ 331 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF--YQLHTY 331 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc--ccccee
Confidence 34555666666666655565554322 223348999999997 4455555667777777642 122222
Q ss_pred eccCCCCCCceEECCCCCEEEEeec
Q 047259 99 IEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 99 ~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
. .|....++++...|.|=++...
T Consensus 332 ~--tp~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 332 R--TPHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred e--cCCCccccccccccceeeecCC
Confidence 1 2333468888888766555443
No 270
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=62.64 E-value=50 Score=27.08 Aligned_cols=30 Identities=13% Similarity=-0.084 Sum_probs=18.6
Q ss_pred ccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 57 FYFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
...+.-|.++|++. ||.++ ..+.|+|+...
T Consensus 177 w~~~~~i~~~~~g~-L~~V~-~~G~lyr~~~p 206 (229)
T PF14517_consen 177 WDSFHFIFFSPDGN-LWAVK-SNGKLYRGRPP 206 (229)
T ss_dssp GGGEEEEEE-TTS--EEEE--ETTEEEEES--
T ss_pred cccceEEeeCCCCc-EEEEe-cCCEEeccCCc
Confidence 34577888889886 77774 45788888754
No 271
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=61.76 E-value=87 Score=28.31 Aligned_cols=91 Identities=14% Similarity=0.283 Sum_probs=59.4
Q ss_pred cccCCCCcEEEEEeCCCCeE---EEEecC-------c---cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeE
Q 047259 31 LVEGKPHGQLLKYDPELEET---TVLHEG-------F---YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLES 97 (225)
Q Consensus 31 ~~~~~~~g~v~~~d~~~~~~---~~~~~~-------~---~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~ 97 (225)
++.+.-+|.|+.|+.-.++. ..++.+ + .+-++++.-|..+ |+.+-+++++|..+.+..+ +....+
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~ 418 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINL 418 (479)
T ss_pred eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccce
Confidence 44556688888888653321 111111 1 2668899999877 9899999998887777643 223444
Q ss_pred Eecc-CCCCCCceEECCCCC-EEEEeec
Q 047259 98 FIEH-LPGGPDNINLAPDGS-FWVALIK 123 (225)
Q Consensus 98 ~~~~-~~g~Pd~i~~d~~G~-l~v~~~~ 123 (225)
+.+. +.|+-+.+++..+|. ||++...
T Consensus 419 l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 419 LYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred eeecccccEEEEEEEccCCCEEEEeccc
Confidence 4431 457889999999998 5665443
No 272
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=61.53 E-value=23 Score=29.78 Aligned_cols=67 Identities=19% Similarity=0.118 Sum_probs=43.3
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
+++.+-+|+.|+.|-.= ...+|||.+..- .-+.++.-.-..-|.++|+||-. |.-+.+.+.+|
T Consensus 255 ~gvrIRpD~KIlATAGW---------------D~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rI 317 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGW---------------DHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARI 317 (323)
T ss_pred cceEEccCCcEEeeccc---------------CCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCc-hhhhccCCceE
Confidence 56778888888887432 125677776532 12223333346779999999955 77777777887
Q ss_pred EEEE
Q 047259 83 RRYW 86 (225)
Q Consensus 83 ~~~~ 86 (225)
..++
T Consensus 318 SLWk 321 (323)
T KOG0322|consen 318 SLWK 321 (323)
T ss_pred Eeee
Confidence 6654
No 273
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.30 E-value=1.6e+02 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
..|.|=.|+..+.++....+.-..-..+++.|||+...|. +.++.++-|+..+
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEG 482 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccC
Confidence 3565555554445665555555678899999999855555 4557777777654
No 274
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.50 E-value=97 Score=27.33 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=43.9
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecC
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKM 124 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~ 124 (225)
..+-+.|-+..+..+....+.|..||+... ...+..+ +...+++|++.|++..+++....
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~--~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQA--SPLKKVI--LTMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccC--Cccceee--eeccccceecCccccceeecccc
Confidence 567888888878888878899999998753 1222222 33468999999988888887663
No 275
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=60.12 E-value=93 Score=27.89 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=49.1
Q ss_pred CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS 116 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~ 116 (225)
+-+||.+... ..+..+...-..-..+.++|+.+...++.+-.+.+-.+...+. .....++++ .+.--.+.+.++|.
T Consensus 368 t~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLaGH-e~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 368 TCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLAGH-EGKVISLDISPDSQ 443 (459)
T ss_pred cEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc--ccchhhcCC-ccceEEEEeccCCc
Confidence 4567766654 3444444455567899999977778888888887766655442 122233322 22334566666766
Q ss_pred EEEEeec
Q 047259 117 FWVALIK 123 (225)
Q Consensus 117 l~v~~~~ 123 (225)
..++..-
T Consensus 444 ~i~t~s~ 450 (459)
T KOG0272|consen 444 AIATSSF 450 (459)
T ss_pred eEEEecc
Confidence 6555443
No 276
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.93 E-value=1.1e+02 Score=25.60 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCC-CceEECCCCCEEEEeec
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGP-DNINLAPDGSFWVALIK 123 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P-d~i~~d~~G~l~v~~~~ 123 (225)
..|.+.. ...|+-+-.+.+.+|++.. |+ .+.+.. |.| +-+.+.++|+.-++..-
T Consensus 149 ~Si~v~~---heIvaGS~DGtvRtydiR~---G~--l~sDy~-g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 149 SSIDVAE---HEIVAGSVDGTVRTYDIRK---GT--LSSDYF-GHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred eEEEecc---cEEEeeccCCcEEEEEeec---ce--eehhhc-CCcceeEEecCCCCEEEEeec
Confidence 4455542 4778888899999999863 22 233322 334 56788889986555443
No 277
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=58.73 E-value=1.4e+02 Score=27.31 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=57.9
Q ss_pred ccCCCCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259 32 VEGKPHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN 110 (225)
Q Consensus 32 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~ 110 (225)
+.....+.+..+|..+|++....+-...| -.+.|-.+. =|++....++|+.+.+..+ .....|.. ..+.-..|.
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~--~P~~t~~G-H~g~V~alk 366 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGED--RPVKTFIG-HHGEVNALK 366 (524)
T ss_pred EeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCC--Ccceeeec-ccCceEEEE
Confidence 44556777778887767776655444444 446665543 5677777889999888642 34455664 344467899
Q ss_pred ECCCCCEEEEeec
Q 047259 111 LAPDGSFWVALIK 123 (225)
Q Consensus 111 ~d~~G~l~v~~~~ 123 (225)
+++.|.|+.+...
T Consensus 367 ~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 367 WNPTGSLLASCSD 379 (524)
T ss_pred ECCCCceEEEecC
Confidence 9988888887665
No 278
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.52 E-value=40 Score=30.02 Aligned_cols=45 Identities=4% Similarity=0.013 Sum_probs=31.7
Q ss_pred cCCCCcEEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEeC
Q 047259 33 EGKPHGQLLKYDPELEETTVLHEGFY---FANGVALSKDENFVVVCES 77 (225)
Q Consensus 33 ~~~~~g~v~~~d~~~~~~~~~~~~~~---~pnGi~~~~dg~~Lyv~~~ 77 (225)
.+...|+||.|+..+++++.....-. .-+.++|+|-|+.|.-++.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 45568999999988888887764332 2467888888876655543
No 279
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.35 E-value=1.1e+02 Score=26.45 Aligned_cols=171 Identities=12% Similarity=0.159 Sum_probs=90.6
Q ss_pred cccCCCCcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCC
Q 047259 31 LVEGKPHGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPD 107 (225)
Q Consensus 31 ~~~~~~~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd 107 (225)
++...-+|.|..++. +.++++- ..-..-++|++.|-|+ |-++-.+.+.+..+++-.+ ..-|.-.+...+.
T Consensus 100 LlS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~G----r~a~v~~L~~~at 172 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRG----RVAFVLNLKNKAT 172 (362)
T ss_pred eeeecCCCcEEEEEc--CCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcC----ccceeeccCCcce
Confidence 344455777777775 4665542 2234489999999998 8888888888877876432 1123323455677
Q ss_pred ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh-----h-----ccCCCCcceEEEEECCC-CcEEEEE
Q 047259 108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL-----L-----IPLGNDAGARIVKVDTH-GKIIMDF 176 (225)
Q Consensus 108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~-----~-----~~~~~~~~~~V~~~d~~-G~~~~~~ 176 (225)
.+.+++.|.-|+.....+..++. -..-+++..+-.+.+. + ....+ ...|...|.+ +.....+
T Consensus 173 ~v~w~~~Gd~F~v~~~~~i~i~q-----~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d--~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 173 LVSWSPQGDHFVVSGRNKIDIYQ-----LDNASVFREIENPKRILCATFLDGSELLVGGD--NEWISLKDTDSDTPLTEF 245 (362)
T ss_pred eeEEcCCCCEEEEEeccEEEEEe-----cccHhHhhhhhccccceeeeecCCceEEEecC--CceEEEeccCCCccceee
Confidence 89999999865555443211100 0111222221111111 1 11122 4555666665 4444333
Q ss_pred ECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259 177 NDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPE 216 (225)
Q Consensus 177 ~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~ 216 (225)
---..+ +..+-.....++.+.++-...+.|-+-+++-+.
T Consensus 246 ~AH~~R-VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 246 LAHENR-VKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ecchhh-eeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 221122 333333333356777776667777776666553
No 280
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=57.81 E-value=1.5e+02 Score=27.02 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=54.4
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCC-CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhh
Q 047259 70 NFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGP-DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPEL 148 (225)
Q Consensus 70 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P-d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~ 148 (225)
+....+...++.|..+++..+ .....|..+ ..| ..+++.++|+...+..-
T Consensus 422 ~~~l~sas~dstV~lwdv~~g--v~i~~f~kH--~~pVysvafS~~g~ylAsGs~------------------------- 472 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESG--VPIHTLMKH--QEPVYSVAFSPNGRYLASGSL------------------------- 472 (524)
T ss_pred CceEEEeecCCeEEEEEccCC--ceeEeeccC--CCceEEEEecCCCcEEEecCC-------------------------
Confidence 445566666677777777531 112223221 222 47888888876554432
Q ss_pred hhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeC
Q 047259 149 INLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPL 212 (225)
Q Consensus 149 ~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~ 212 (225)
.++|...+.. |++...+.+-.+ +..++.. +|....+......+-++++
T Consensus 473 -----------dg~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 -----------DGCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred -----------CCeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 4677776654 888888876322 4555542 3444444455555555554
No 281
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=57.75 E-value=1.6e+02 Score=27.25 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=35.3
Q ss_pred ceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCcccccCC
Q 047259 160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPEAELAP 221 (225)
Q Consensus 160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~~~~~~ 221 (225)
.-.|.+++.+|.....+.-..| ..++-+-.. ++...+++...-.|+.- .+++-+|..+
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~~~~~ts 528 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYEILYW-KPSECKQITS 528 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecC---ceeEEeeecCCCceEEeccCceEEEEE-ccccCcccce
Confidence 5677888888877666665444 234444332 56666777665555544 6666655443
No 282
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.66 E-value=1.2e+02 Score=25.75 Aligned_cols=22 Identities=27% Similarity=0.046 Sum_probs=14.0
Q ss_pred cCCCEEEEEeCCCCEEEEEEecC
Q 047259 67 KDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 67 ~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
=||..+-+.+++ .+|||+...|
T Consensus 197 VdG~l~~f~~sG-~qvwr~~t~G 218 (354)
T KOG4649|consen 197 VDGVLTSFDESG-RQVWRPATKG 218 (354)
T ss_pred eccEEEEEcCCC-cEEEeecCCC
Confidence 366655666666 6788876544
No 283
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=57.45 E-value=1.2e+02 Score=26.13 Aligned_cols=67 Identities=21% Similarity=0.110 Sum_probs=0.0
Q ss_pred EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEE-EEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCCCC
Q 047259 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLL-KYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESWKF 80 (225)
Q Consensus 5 v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~~~ 80 (225)
|++..+|.+..|-+. .|.+. .+|..+|+.-.-..-...+ .-|+||||.. +..+.+..+
T Consensus 187 v~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKg 248 (346)
T KOG2111|consen 187 VALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKG 248 (346)
T ss_pred EEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCC
Q ss_pred EEEEEEecC
Q 047259 81 RCRRYWLKG 89 (225)
Q Consensus 81 ~I~~~~~~~ 89 (225)
.|..|.+.+
T Consensus 249 TlHiF~l~~ 257 (346)
T KOG2111|consen 249 TLHIFSLRD 257 (346)
T ss_pred eEEEEEeec
No 284
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.30 E-value=1.8e+02 Score=27.71 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=24.2
Q ss_pred ecCccccceeEEecCCCEEEEEeCCCCEEEE
Q 047259 54 HEGFYFANGVALSKDENFVVVCESWKFRCRR 84 (225)
Q Consensus 54 ~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~ 84 (225)
....-+|.-++.+|+|+++-||.-+...|+.
T Consensus 348 gs~eiyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 348 GSVEIYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred cccccchHHhccCCCCcEEEEecCccEEEEE
Confidence 3445589999999999988888777666653
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=57.16 E-value=23 Score=31.18 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCcEEEEEeCC---CCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEE
Q 047259 36 PHGQLLKYDPE---LEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYW 86 (225)
Q Consensus 36 ~~g~v~~~d~~---~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~ 86 (225)
+.|.+|.+|-- .+..+.++..+.+-..++++||++++.-+|... .|+..+
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ 179 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSR 179 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEe
Confidence 45656655532 255666777888999999999999888787654 454444
No 286
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=57.04 E-value=1.2e+02 Score=25.62 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259 35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD 114 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~ 114 (225)
.+..+|-.+|..+.+....-+....-|-|+|..+++ +|+...+.++|-.+.... +..+..+- -.+..---|.+||+
T Consensus 125 ~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyps--Lkpv~si~-AH~snCicI~f~p~ 200 (313)
T KOG1407|consen 125 NKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYPS--LKPVQSIK-AHPSNCICIEFDPD 200 (313)
T ss_pred cCcccEEEEEecccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEeccc--cccccccc-cCCcceEEEEECCC
Confidence 344556666654333222223345679999998877 888888888877665421 22222211 11222334789999
Q ss_pred CCEEEEeec
Q 047259 115 GSFWVALIK 123 (225)
Q Consensus 115 G~l~v~~~~ 123 (225)
|+.+.+...
T Consensus 201 GryfA~GsA 209 (313)
T KOG1407|consen 201 GRYFATGSA 209 (313)
T ss_pred CceEeeccc
Confidence 998777655
No 287
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=56.91 E-value=1.2e+02 Score=25.68 Aligned_cols=109 Identities=11% Similarity=0.111 Sum_probs=53.6
Q ss_pred cceeEEecCCCEE-EEEeC---CCCEEEEEEecCCC--CCceeEEec--cCCCCCCceEECCCCCEEEEeecCCchhhhh
Q 047259 60 ANGVALSKDENFV-VVCES---WKFRCRRYWLKGPR--QGRLESFIE--HLPGGPDNINLAPDGSFWVALIKMNQTGVRA 131 (225)
Q Consensus 60 pnGi~~~~dg~~L-yv~~~---~~~~I~~~~~~~~~--~~~~~~~~~--~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~ 131 (225)
..++.|+.+|++. +.+|- ....|..|++.... +...+.+.. .....+.-.-+++-|...++.+.
T Consensus 96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-------- 167 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-------- 167 (327)
T ss_pred eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC--------
Confidence 3577888888744 33332 23456666665210 111111111 11123445555666666666655
Q ss_pred hhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcE-EEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEE
Q 047259 132 IQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKI-IMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVG 208 (225)
Q Consensus 132 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~-~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~ 208 (225)
.+.|.++|.. |+. +.+-..-. +.++.+.. .+...+|+......--
T Consensus 168 ----------------------------~G~is~~da~~g~~~v~s~~~h~----~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 168 ----------------------------DGSISIYDARTGKELVDSDEEHS----SKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred ----------------------------CCcEEEEEcccCceeeechhhhc----cccccccccCCcceEEecccCccce
Confidence 6778888865 543 33322211 13555554 3566777765544433
No 288
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.35 E-value=1.4e+02 Score=26.28 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=31.4
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCCCEEEEeec
Q 047259 69 ENFVVVCESWKFRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 69 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
+....++-+.+..|.-+++..+ .. .|. .+....-.++++.+.|++.++...
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg---~c-L~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTG---MC-LFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred CccEEEeecccceEEEEeccCC---eE-EEEEecccceeeeeEEcCCCeEEEEEec
Confidence 3345566666667777777642 21 121 112224679999999999888877
No 289
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.18 E-value=1.5e+02 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=17.3
Q ss_pred ccccceeEEecCCCEEEEEeCC-CCEEEEE
Q 047259 57 FYFANGVALSKDENFVVVCESW-KFRCRRY 85 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~-~~~I~~~ 85 (225)
...-+.+.|+|||+.| ++-+. ..+||..
T Consensus 186 ~~eV~DL~FS~dgk~l-asig~d~~~VW~~ 214 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFL-ASIGADSARVWSV 214 (398)
T ss_pred cCccccceeCCCCcEE-EEecCCceEEEEe
Confidence 4456899999999844 33333 3445444
No 290
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=54.42 E-value=40 Score=31.14 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=35.7
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.+|..+++|||+.| .+.+.++.+..|+.+.- .-.-++-. .-|.-==+++.+||++.|+...
T Consensus 292 ~in~f~FS~DG~~L-A~VSqDGfLRvF~fdt~--eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 292 SINEFAFSPDGKYL-ATVSQDGFLRIFDFDTQ--ELLGVMKS-YFGGLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred cccceeEcCCCceE-EEEecCceEEEeeccHH--HHHHHHHh-hccceEEEEEcCCccEEEecCC
Confidence 68999999999855 45556677777776531 00000101 1122234567778877776655
No 291
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=54.38 E-value=1.3e+02 Score=25.37 Aligned_cols=52 Identities=13% Similarity=-0.041 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCCC----CEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESWK----FRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~~----~~I~~~~~~~ 89 (225)
...+++||+.+.+++.+..- .......+..-++ .|||.--.. ..+++|+++.
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 45799999988889886421 1222223333344 488874322 2467888864
No 292
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=54.30 E-value=1.3e+02 Score=25.03 Aligned_cols=108 Identities=13% Similarity=0.118 Sum_probs=60.3
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec--cC---C----CCC-CceEECCCCCEEEEeecCCchhhh
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE--HL---P----GGP-DNINLAPDGSFWVALIKMNQTGVR 130 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~---~----g~P-d~i~~d~~G~l~v~~~~~~~~~~~ 130 (225)
+|-++- +| .||..-.+++.|.||++..........+-. .. + +.- -.+++|..| |||--....+
T Consensus 72 tG~vVY-ng-slYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~---- 144 (250)
T PF02191_consen 72 TGHVVY-NG-SLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDN---- 144 (250)
T ss_pred CCeEEE-CC-cEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCC----
Confidence 454443 23 488888899999999997532221111111 00 0 111 367888654 8887655321
Q ss_pred hhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCC
Q 047259 131 AIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQS 204 (225)
Q Consensus 131 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~ 204 (225)
. ..-.|.++||+ -++.+.....--+ .....+...=|.||+.....
T Consensus 145 -------------------------~--g~ivvskld~~tL~v~~tw~T~~~k--~~~~naFmvCGvLY~~~s~~ 190 (250)
T PF02191_consen 145 -------------------------N--GNIVVSKLDPETLSVEQTWNTSYPK--RSAGNAFMVCGVLYATDSYD 190 (250)
T ss_pred -------------------------C--CcEEEEeeCcccCceEEEEEeccCc--hhhcceeeEeeEEEEEEECC
Confidence 0 14567889996 6777777542111 12222333457999987665
No 293
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=54.13 E-value=22 Score=32.53 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE-EEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259 3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET-TVLHEGFYFANGVALSKDENFVVVCESWKFR 81 (225)
Q Consensus 3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~ 81 (225)
..+++.+|-++-|+.-+ .|+|..||..+..+ +.+...-.....|.+++||..|| +---++.
T Consensus 513 yALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDnt 574 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNT 574 (705)
T ss_pred hhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCCCccc
Confidence 35677788777777665 78888888764332 23333345678899999998776 4445678
Q ss_pred EEEEEecC
Q 047259 82 CRRYWLKG 89 (225)
Q Consensus 82 I~~~~~~~ 89 (225)
|..+|+..
T Consensus 575 vRcWDlre 582 (705)
T KOG0639|consen 575 VRCWDLRE 582 (705)
T ss_pred eeehhhhh
Confidence 88888763
No 294
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=54.03 E-value=1.3e+02 Score=25.10 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=46.9
Q ss_pred CCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEe
Q 047259 34 GKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFI 99 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~ 99 (225)
..+.-.++.||-.+|++..-. ..+..-|.+.+..+. .+.++-+....|..++-........+++.
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhh
Confidence 344557889998888876554 457889999998875 48889888888888887644344444443
No 295
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=53.96 E-value=2e+02 Score=27.14 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=34.1
Q ss_pred CCCCcEEEEEeCCCCeE-EEE---ec--------CccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 34 GKPHGQLLKYDPELEET-TVL---HE--------GFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~-~~~---~~--------~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
+.-.|.|-.||+..+.. ..+ .. ....+..|.|+.||= -.-+-+.++.|+.||+..
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEccc
Confidence 45578888888864432 111 11 122367788988863 244445678999999874
No 296
>PLN02193 nitrile-specifier protein
Probab=52.35 E-value=1.8e+02 Score=26.31 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCeEEEEecCcccc----ceeEEecCCCEEEEEeC-----CCCEEEEEEecC
Q 047259 38 GQLLKYDPELEETTVLHEGFYFA----NGVALSKDENFVVVCES-----WKFRCRRYWLKG 89 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~p----nGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~ 89 (225)
..+++||..+.+++.+......| .+.+..--++.|||--- ..+.+++|++..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 45899999888888654221122 23222222345887632 235789999864
No 297
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=52.27 E-value=1.5e+02 Score=25.42 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=44.6
Q ss_pred cCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 33 EGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 33 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+...|.|-++|..++....+..+...-.+|...+-.+ ..|+-++..+|..+++..
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 34568899999988787777777777777888887555 789999999999998763
No 298
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.09 E-value=1.6e+02 Score=25.45 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=76.3
Q ss_pred ccccceeEEecCCCEEEEEeCCCCEEEEEEecCC--CCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhh
Q 047259 57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGP--RQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQ 133 (225)
Q Consensus 57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~--~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~ 133 (225)
...-..|+|||....+..+.++.+.|..++++.. ..+ .... ...+-+=.+++..||. +|.+.......+++...
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhh-ccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 3345679999966668889999999999988642 111 1111 2344345777888885 66666554332222211
Q ss_pred cChhHHHHHH---------hhhhh-hhhh-ccCCCCcceEEEEE-CC-CCcEEEEEECCCCCcccceeEEEEeCCEEEEe
Q 047259 134 SCPDKWKLLQ---------AYPEL-INLL-IPLGNDAGARIVKV-DT-HGKIIMDFNDPNATYISFVTSAVEFEDNLYMA 200 (225)
Q Consensus 134 ~~~~~r~~~~---------~~p~~-~~~~-~~~~~~~~~~V~~~-d~-~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~ 200 (225)
.. .+.+-. -++.. ...+ -|..+ +-++| |+ .-+.+..+..|+.. .+.+-..-|.|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD----KTlKfWD~R~~~pv~t~~LPeRv------Ya~Dv~~pm~vV 171 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD----KTLKFWDTRSSNPVATLQLPERV------YAADVLYPMAVV 171 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccc----cceeecccCCCCeeeeeecccee------eehhccCceeEE
Confidence 10 000000 00000 0000 01111 11221 12 13445555555431 122334556777
Q ss_pred eCCCCeEEEEeCCCcccccC
Q 047259 201 SIQSKFVGKLPLNTPEAELA 220 (225)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~ 220 (225)
......|.+|.|.....|+-
T Consensus 172 ata~r~i~vynL~n~~te~k 191 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFK 191 (347)
T ss_pred EecCCcEEEEEcCCCcchhh
Confidence 78889999999988877763
No 299
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.98 E-value=2e+02 Score=26.71 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=49.8
Q ss_pred cCCCCcEEEEEeCCCCeEEEEecCccccce---eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCce
Q 047259 33 EGKPHGQLLKYDPELEETTVLHEGFYFANG---VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI 109 (225)
Q Consensus 33 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnG---i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i 109 (225)
.+.+.|.|+.|+...|+++........+++ |.++.+-..+| +.....++..+..... --..++- ..+..+..+
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~--~~~~~~~-~~~~~~~sl 150 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEK--VIIRIWK-EQKPLVSSL 150 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccc--eeeeeec-cCCCccceE
Confidence 467889999999877888776654444443 33333333333 3333445555554321 1112221 234457899
Q ss_pred EECCCCCEEEEeec
Q 047259 110 NLAPDGSFWVALIK 123 (225)
Q Consensus 110 ~~d~~G~l~v~~~~ 123 (225)
++.+||.+.++...
T Consensus 151 ~is~D~~~l~~as~ 164 (541)
T KOG4547|consen 151 CISPDGKILLTASR 164 (541)
T ss_pred EEcCCCCEEEeccc
Confidence 99999998876544
No 300
>smart00284 OLF Olfactomedin-like domains.
Probab=49.99 E-value=1.5e+02 Score=24.72 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=50.2
Q ss_pred cEEEcCCC--cEEEEcCCCCCCcchhhhhcccCCCCc--EEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEeC
Q 047259 4 DVIEASDG--SLYFTVSSKKYTPAEYYKDLVEGKPHG--QLLKYDPELEETTVLHE--GFYFANGVALSKDENFVVVCES 77 (225)
Q Consensus 4 dv~~~~dG--~iy~td~~~~~~~~~~~~~~~~~~~~g--~v~~~d~~~~~~~~~~~--~~~~pnGi~~~~dg~~Lyv~~~ 77 (225)
|+++|.+| -||-|... .| .|-++|+.+=+++...+ ......|=+|--=| .||++++
T Consensus 132 DlAvDE~GLWvIYat~~~-----------------~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCG-vLY~~~s 193 (255)
T smart00284 132 DLAVDENGLWVIYATEQN-----------------AGKIVISKLNPATLTIENTWITTYNKRSASNAFMICG-ILYVTRS 193 (255)
T ss_pred EEEEcCCceEEEEeccCC-----------------CCCEEEEeeCcccceEEEEEEcCCCcccccccEEEee-EEEEEcc
Confidence 67788777 25555443 34 34588886555554432 11222233333334 4999986
Q ss_pred ---CCCEE-EEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeec
Q 047259 78 ---WKFRC-RRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIK 123 (225)
Q Consensus 78 ---~~~~I-~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~ 123 (225)
...+| +.||..+.......+......+.-..+...|. ..||+=+.+
T Consensus 194 ~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng 244 (255)
T smart00284 194 LGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNNG 244 (255)
T ss_pred CCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeCC
Confidence 22343 35666543222222222212223344666664 457775544
No 301
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=49.15 E-value=1.4e+02 Score=26.47 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=46.4
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
.|+++|- +=||+..+ ..+.+-.+|..+|++...+.+ ...-.|+++|+..-+||-+- ....|
T Consensus 156 ~vavdP~-n~wf~tgs----------------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~V 217 (460)
T KOG0285|consen 156 SVAVDPG-NEWFATGS----------------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQV 217 (460)
T ss_pred EEeeCCC-ceeEEecC----------------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCee
Confidence 4677774 45555443 256778888888998887664 57789999999877665444 34566
Q ss_pred EEEEec
Q 047259 83 RRYWLK 88 (225)
Q Consensus 83 ~~~~~~ 88 (225)
-.+|+.
T Consensus 218 KCwDLe 223 (460)
T KOG0285|consen 218 KCWDLE 223 (460)
T ss_pred EEEech
Confidence 667764
No 302
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=48.31 E-value=33 Score=28.90 Aligned_cols=57 Identities=21% Similarity=0.424 Sum_probs=39.4
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v 119 (225)
+-+|+.+-||++ ++-+.-+++||..|...+ ....-++..+ .+.-+.+++.++-.+..
T Consensus 253 Gv~gvrIRpD~K-IlATAGWD~RiRVyswrt--l~pLAVLkyH-sagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 253 GVSGVRIRPDGK-ILATAGWDHRIRVYSWRT--LNPLAVLKYH-SAGVNAVAFSPDCELMA 309 (323)
T ss_pred CccceEEccCCc-EEeecccCCcEEEEEecc--CCchhhhhhh-hcceeEEEeCCCCchhh
Confidence 458999999998 888999999999999874 1222233322 24467788888744433
No 303
>PLN02153 epithiospecifier protein
Probab=47.97 E-value=1.8e+02 Score=24.88 Aligned_cols=53 Identities=9% Similarity=-0.067 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc----ceeEEecCCCEEEEEeC-----CCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA----NGVALSKDENFVVVCES-----WKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p----nGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~ 89 (225)
...+++||..+.+++.+......| .+.+...-++.||+--- ..+.+++|++..
T Consensus 49 ~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 49 DKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred eCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 357999999888888764322112 23322222345887632 124688898764
No 304
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.22 E-value=1.9e+02 Score=24.63 Aligned_cols=52 Identities=8% Similarity=-0.095 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETT-VLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~-~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
+++.|.+|+.+.... ..--+...-.+.+++|-...||++.+. +++.+...++
T Consensus 114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITA-GAVLAVTKNP 166 (354)
T ss_pred CCcEEEecccccceEEecccCCceeccceecCCCceEEEEecc-ceEEEEccCC
Confidence 566777776533211 111233344566777733459988875 6888887764
No 305
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.78 E-value=1.2e+02 Score=25.54 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=36.7
Q ss_pred CCcEEEEEeCC-CCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCEEEEEEe
Q 047259 36 PHGQLLKYDPE-LEETTVLH--EGFYFANGVALSKDENFVVVCESWKFRCRRYWL 87 (225)
Q Consensus 36 ~~g~v~~~d~~-~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~ 87 (225)
+.|+++.++.. .+.+.+.. +--..--+++|++...-..++.++.+.+..|+.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 58999999874 34444432 112234689999987777788889999999985
No 306
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=45.68 E-value=2.8e+02 Score=26.60 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=37.5
Q ss_pred ccCCCCcEEEEEeCCCCe-EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 32 VEGKPHGQLLKYDPELEE-TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 32 ~~~~~~g~v~~~d~~~~~-~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
|.....|.++.+|..+++ ...+.....--....|+.||+ |.-+......|..||+..
T Consensus 144 l~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEeccCceEEEEEcccCceeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCcc
Confidence 334557889999976443 222223334456788999998 544556677899999864
No 307
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=45.67 E-value=1.9e+02 Score=24.57 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred eeEEecC-CCEEEEEeCCCCEEEEEEec-CCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHH
Q 047259 62 GVALSKD-ENFVVVCESWKFRCRRYWLK-GPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKW 139 (225)
Q Consensus 62 Gi~~~~d-g~~Lyv~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r 139 (225)
.++++|- |. ++.+-.....|..+... +....-..++-+...-.-+.++..|.|+ |++...
T Consensus 19 ~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aS---------------- 80 (312)
T KOG0645|consen 19 SVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASAS---------------- 80 (312)
T ss_pred EEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEee----------------
Q ss_pred HHHHhhhhhhhhhccCCCCcceEEEEECCCC----cEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259 140 KLLQAYPELINLLIPLGNDAGARIVKVDTHG----KIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNT 214 (225)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G----~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~ 214 (225)
.-....+-.++ +.+..++.++.+ .-.++.. +|.+.-+-.....|++.+.++
T Consensus 81 --------------------FD~t~~Iw~k~~~efecv~~lEGHEnE----VK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 81 --------------------FDATVVIWKKEDGEFECVATLEGHENE----VKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred --------------------ccceEEEeecCCCceeEEeeeeccccc----eeEEEEcCCCCEEEEeeCCCeEEEEEecC
Q ss_pred ccc
Q 047259 215 PEA 217 (225)
Q Consensus 215 ~~~ 217 (225)
.++
T Consensus 137 ddE 139 (312)
T KOG0645|consen 137 DDE 139 (312)
T ss_pred CCc
No 308
>PLN02193 nitrile-specifier protein
Probab=45.40 E-value=2.4e+02 Score=25.59 Aligned_cols=51 Identities=16% Similarity=0.034 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCeEEEEecCcc-----ccceeEEecCCCEEEEEeCC-----CCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLHEGFY-----FANGVALSKDENFVVVCESW-----KFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~-----~pnGi~~~~dg~~Lyv~~~~-----~~~I~~~~~~~ 89 (225)
...+++||+.+.+++.+..... ....++.. ++.|||.--. .+.+.+|++..
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCC
Confidence 3578999998888887643211 11233333 3358876432 24577888764
No 309
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=45.25 E-value=68 Score=27.80 Aligned_cols=53 Identities=15% Similarity=-0.009 Sum_probs=28.9
Q ss_pred CCcEEEEEeCCC-CeEEEEe------cCccccceeEEecCC--CEEEEEeCCCCEEEEEEecC
Q 047259 36 PHGQLLKYDPEL-EETTVLH------EGFYFANGVALSKDE--NFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 36 ~~g~v~~~d~~~-~~~~~~~------~~~~~pnGi~~~~dg--~~Lyv~~~~~~~I~~~~~~~ 89 (225)
....||.+|.++ |++...+ .++..|..+..+.|| +++|..|.. +.|||+++.+
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~-GnlwR~dl~~ 240 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG-GNLWRFDLSS 240 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT-SEEEEEE--T
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC-CcEEEEECCC
Confidence 356789999887 6643322 123344434344455 478998875 7999999874
No 310
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=44.96 E-value=1.7e+02 Score=24.18 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCeEEEEe-cC----c-cccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLH-EG----F-YFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~-~~----~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.|+||.+|+.+|..+.+. .. + ..+-|+.|.|-=++|.|... .++=+|+++++
T Consensus 47 ~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-~GqNlR~npdt 104 (236)
T PF14339_consen 47 TGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-TGQNLRLNPDT 104 (236)
T ss_pred CCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-CCcEEEECCCC
Confidence 689999999989877662 11 1 23678889887667865543 35667888874
No 311
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=44.78 E-value=1.8e+02 Score=24.09 Aligned_cols=139 Identities=15% Similarity=0.071 Sum_probs=69.0
Q ss_pred CcEEEEEeCCCCeEE-EE-ecCcc----------ccceeEEecCCCEEEEE---eCCCCEEEEEEecCCCCCceeEEecc
Q 047259 37 HGQLLKYDPELEETT-VL-HEGFY----------FANGVALSKDENFVVVC---ESWKFRCRRYWLKGPRQGRLESFIEH 101 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~-~~-~~~~~----------~pnGi~~~~dg~~Lyv~---~~~~~~I~~~~~~~~~~~~~~~~~~~ 101 (225)
+..|.+||..++.+. .. +++-. .-+.|.|.-|+.-|||- +...+.|..-.++...+.-.+.+-..
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~ 167 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS 167 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec
Confidence 678999999877766 22 22111 12345555555546554 33334454433332223333333322
Q ss_pred CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEE-EEECCC-CcEE-EEEEC
Q 047259 102 LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARI-VKVDTH-GKII-MDFND 178 (225)
Q Consensus 102 ~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V-~~~d~~-G~~~-~~~~~ 178 (225)
.+..--+-+|=-=|-||++..... . ...| ..+|.. ++.. ..+..
T Consensus 168 ~~k~~~~naFmvCGvLY~~~s~~~------------------------------~---~~~I~yafDt~t~~~~~~~i~f 214 (250)
T PF02191_consen 168 YPKRSAGNAFMVCGVLYATDSYDT------------------------------R---DTEIFYAFDTYTGKEEDVSIPF 214 (250)
T ss_pred cCchhhcceeeEeeEEEEEEECCC------------------------------C---CcEEEEEEECCCCceeceeeee
Confidence 222112334444578888887621 0 2333 667775 4332 22333
Q ss_pred CCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeC
Q 047259 179 PNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPL 212 (225)
Q Consensus 179 p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~ 212 (225)
+. .....+.+. +.+++||+=+ ++.+..+++
T Consensus 215 ~~--~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v 246 (250)
T PF02191_consen 215 PN--PYGNISMLSYNPRDKKLYAWD--NGYQVTYDV 246 (250)
T ss_pred cc--ccCceEeeeECCCCCeEEEEE--CCeEEEEEE
Confidence 32 234455554 4589999876 455555544
No 312
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=43.30 E-value=1.4e+02 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=26.7
Q ss_pred CCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCC
Q 047259 34 GKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESW 78 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~ 78 (225)
+...|.+-.+|..+. +++.. .-....=..|+|||++++.+.+.
T Consensus 332 GNL~G~mEvwDv~n~--K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNR--KLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCCCCceEEEeccch--hhccccccCCceEEEEcCCCcEEEEEecc
Confidence 345777777776532 22221 12334457899999988877765
No 313
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=43.07 E-value=2e+02 Score=24.14 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=54.6
Q ss_pred CcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc-cccceeEE-ecCCCEEEEEeCCC
Q 047259 3 NDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF-YFANGVAL-SKDENFVVVCESWK 79 (225)
Q Consensus 3 ndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~-~~dg~~Lyv~~~~~ 79 (225)
|.|-++| +++|+|+- +.+.+|.+|.++|+.+....+. .+-..++. +..+. + ++-.-+
T Consensus 118 Nam~ldP~enSi~~Ag------------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-i-lsG~ED 177 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAG------------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-I-LSGAED 177 (325)
T ss_pred ceeEeccCCCcEEEec------------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-e-eecCCC
Confidence 6666775 45666653 3789999999999988877553 34455554 22322 2 233334
Q ss_pred CEEEEEEecCCCCCceeEEecc--CC--CCCCc----eEECCCCCEEEEeecCC
Q 047259 80 FRCRRYWLKGPRQGRLESFIEH--LP--GGPDN----INLAPDGSFWVALIKMN 125 (225)
Q Consensus 80 ~~I~~~~~~~~~~~~~~~~~~~--~~--g~Pd~----i~~d~~G~l~v~~~~~~ 125 (225)
+.+..++..+. ....+ ++. -+ -.|+. .+++-+-.+.|+..++.
T Consensus 178 GtvRvWd~kt~--k~v~~-ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 178 GTVRVWDTKTQ--KHVSM-IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK 228 (325)
T ss_pred ccEEEEecccc--ceeEE-eccccChhhcCcccCceeEEEeccCceEEecCCCc
Confidence 55555555431 11111 111 11 13442 45665556777776654
No 314
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=45 Score=30.24 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=18.3
Q ss_pred CCCceEECCCCCEEEEeecC
Q 047259 105 GPDNINLAPDGSFWVALIKM 124 (225)
Q Consensus 105 ~Pd~i~~d~~G~l~v~~~~~ 124 (225)
.|-||.+|.||..|+++.+.
T Consensus 468 lphgl~~dkdgf~~~tdvas 487 (501)
T KOG3567|consen 468 LPHGLSIDKDGFYWVTDVAS 487 (501)
T ss_pred cCCcceecCCCcEEeecccc
Confidence 68999999999999999884
No 315
>PF13964 Kelch_6: Kelch motif
Probab=41.89 E-value=72 Score=18.65 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=25.2
Q ss_pred EcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe
Q 047259 7 EASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH 54 (225)
Q Consensus 7 ~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 54 (225)
+.-+|+||+.=.... .......+++||+.+++++.+.
T Consensus 8 v~~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDN-----------SGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEECCEEEEECCCCC-----------CCCccccEEEEcCCCCcEEECC
Confidence 344678888844311 0234678999999999998864
No 316
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=41.64 E-value=86 Score=30.67 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEe
Q 047259 37 HGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWL 87 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~ 87 (225)
.|.|=.||.-..+.+.+..+++.| -||..+.||++|..+ +...|+.++.
T Consensus 597 ~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t 646 (794)
T PF08553_consen 597 KGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT 646 (794)
T ss_pred CCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence 454444453322233345566666 699999999866443 3457777764
No 317
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=40.92 E-value=2.7e+02 Score=25.02 Aligned_cols=62 Identities=6% Similarity=0.075 Sum_probs=31.4
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
.--.++.|+.+|.++ |+-...+.|.-+.++- ..+..+.......-..+++.+...-+++..+
T Consensus 139 s~Vr~m~ws~~g~wm-iSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDskF~t~Sd 200 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWM-ISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD 200 (464)
T ss_pred ccceeEEEccCCCEE-EEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCceeEEecC
Confidence 345789999999755 5555555555554431 1222221111112345566655555555544
No 318
>PF04351 PilP: Pilus assembly protein, PilP; InterPro: IPR007446 The PilP family are periplasmic proteins involved in the biogenesis of type IV pili [].; PDB: 2Y4Y_B 2Y4X_A 2IVW_A 2LC4_A.
Probab=40.26 E-value=74 Score=24.05 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCC
Q 047259 104 GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNAT 182 (225)
Q Consensus 104 g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~ 182 (225)
+..-+|..+++|.+|.+.-+.. +. .. +|+|..+++++ .+.+.+.+..|.
T Consensus 89 ~~~~ALv~~pdg~v~~V~~G~y------iG----------------------~n--~G~I~~Is~~~I~l~E~v~d~~G~ 138 (149)
T PF04351_consen 89 GQPWALVQDPDGKVYRVKVGDY------IG----------------------QN--YGRITSISEDSIELVEIVPDGQGC 138 (149)
T ss_dssp TEEEEEEEE-TTEEEEEETTEE------ET----------------------TT--TEEEEEEETTEEEEEEEEE-SSSS
T ss_pred CEEEEEEEeCCCCEEEecCCCE------ec----------------------cC--CCEEEEEeCCeEEEEEEcccCCCC
Confidence 3466888999999999887732 11 11 89999999887 456777776665
No 319
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=39.44 E-value=3.4e+02 Score=25.67 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=30.4
Q ss_pred ceEEEEECCCCc-EEEEE-------ECCCCCcccceeEEEEeCCEEEEe-eCCCCeEEEEeCCCcc
Q 047259 160 GARIVKVDTHGK-IIMDF-------NDPNATYISFVTSAVEFEDNLYMA-SIQSKFVGKLPLNTPE 216 (225)
Q Consensus 160 ~~~V~~~d~~G~-~~~~~-------~~p~g~~~~~~t~~~~~~~~Lyv~-~~~~~~i~~~~~~~~~ 216 (225)
.+.|.-.||.-+ .+..+ +.|.+...+.+|.+.+.++-|=|+ ....+.++.++|.+-.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456666776422 11222 124444455677776655333332 3456788888877643
No 320
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=38.78 E-value=2.4e+02 Score=24.67 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=55.0
Q ss_pred CCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCC---ceEE
Q 047259 36 PHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPD---NINL 111 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd---~i~~ 111 (225)
..|.|..+|..+++...-. .....-|.|-+.|+.-.|.++.+.++.|...+++.. .=.-+|. +..|--| .+.+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfG-G~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFG-GVEGHRDEVLSVDF 189 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEec-ccccccCcEEEEEE
Confidence 5677888888766554433 344557899999998779999999999999888742 1122332 3333222 3555
Q ss_pred CCCCCEEEEeecCCc
Q 047259 112 APDGSFWVALIKMNQ 126 (225)
Q Consensus 112 d~~G~l~v~~~~~~~ 126 (225)
+.+|. +++..+...
T Consensus 190 ~~~gd-~i~ScGmDh 203 (385)
T KOG1034|consen 190 SLDGD-RIASCGMDH 203 (385)
T ss_pred cCCCC-eeeccCCcc
Confidence 66776 444444433
No 321
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=38.42 E-value=3.9e+02 Score=26.16 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=38.9
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecC
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKM 124 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~ 124 (225)
.-++++|+.||..||=. -..+-+.+..++++ . +.|.+.+.+.--+|.+.+|+.+|....+.
T Consensus 253 ~V~~L~fS~~G~~LlSG-G~E~VLv~Wq~~T~---~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSG-GREGVLVLWQLETG---K-KQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred ccceeEEecCCceEeec-ccceEEEEEeecCC---C-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 45899999999866532 22333444444432 2 34554444445799999999988877663
No 322
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=37.44 E-value=3.7e+02 Score=25.56 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=48.5
Q ss_pred CCCCcEEEEEeCC-----CCeEEEEecCccccceeEEecCCCEEEEE--eCCCCEEEEEEecCCCCCceeEEeccCCCCC
Q 047259 34 GKPHGQLLKYDPE-----LEETTVLHEGFYFANGVALSKDENFVVVC--ESWKFRCRRYWLKGPRQGRLESFIEHLPGGP 106 (225)
Q Consensus 34 ~~~~g~v~~~d~~-----~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~--~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P 106 (225)
..+.+.+..|... .+.+.+++....--+-+.|..+|++|-+. +.++.+|+.+.+... .....|. -..|.|
T Consensus 493 ~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~--~sQ~PF~-kskG~v 569 (733)
T KOG0650|consen 493 SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR--KSQSPFR-KSKGLV 569 (733)
T ss_pred cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc--cccCchh-hcCCce
Confidence 3456666666543 12234555666667889999999976333 234567888877531 0112222 133556
Q ss_pred CceEECCCC-CEEEEeec
Q 047259 107 DNINLAPDG-SFWVALIK 123 (225)
Q Consensus 107 d~i~~d~~G-~l~v~~~~ 123 (225)
-...|-+.- .++||...
T Consensus 570 q~v~FHPs~p~lfVaTq~ 587 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQR 587 (733)
T ss_pred eEEEecCCCceEEEEecc
Confidence 666666643 46665533
No 323
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.28 E-value=3.1e+02 Score=24.42 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=31.1
Q ss_pred eeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 62 GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 62 Gi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
++..++||+.+.+...+ .+++-.-++. ...+......+....++.+.++|.+|++...
T Consensus 243 ~v~~~~dG~~~~vg~~G--~~~~s~d~G~--~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRG--NFYLTWEPGQ--PYWQPHNRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred eEEEcCCCCEEEEECCc--cEEEecCCCC--cceEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence 45667777644444433 4555443331 1112221112234567888899999987744
No 324
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=35.93 E-value=3.9e+02 Score=25.39 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=49.2
Q ss_pred ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 54 HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 54 ~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
+.+.--|.=|||++....+-|+...-+-|..|.+......+.+-..=.....|.||+|-.|..+.+-...
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 4677789999999999988888877889999988642233332211012347999999998776555544
No 325
>PTZ00486 apyrase Superfamily; Provisional
Probab=35.90 E-value=1.4e+02 Score=26.06 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=25.7
Q ss_pred ceEEEEECCCC-cEEEEE--ECCCCCcccc--eeEEEEeCCEEEEeeCCC
Q 047259 160 GARIVKVDTHG-KIIMDF--NDPNATYISF--VTSAVEFEDNLYMASIQS 204 (225)
Q Consensus 160 ~~~V~~~d~~G-~~~~~~--~~p~g~~~~~--~t~~~~~~~~Lyv~~~~~ 204 (225)
.|.|.+++-++ ++...+ .+.+|..-.+ .==++..+++|||++.+.
T Consensus 134 TGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~Gk 183 (352)
T PTZ00486 134 TGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIGK 183 (352)
T ss_pred ceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEecccc
Confidence 67888887554 454443 4444421110 011345799999999773
No 326
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=35.55 E-value=1.4e+02 Score=28.45 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=15.4
Q ss_pred ceEEEEECCC-CcEEEEEEC
Q 047259 160 GARIVKVDTH-GKIIMDFND 178 (225)
Q Consensus 160 ~~~V~~~d~~-G~~~~~~~~ 178 (225)
..+++.+|.+ ||+...+.+
T Consensus 281 DarlIALdA~tGkvc~~Fa~ 300 (773)
T COG4993 281 DARLIALDADTGKVCWSFAN 300 (773)
T ss_pred CceEEEEeCCCCcEeheecc
Confidence 6788999986 898888765
No 327
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=35.42 E-value=2.6e+02 Score=23.17 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=19.7
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEE--EEEec
Q 047259 59 FANGVALSKDENFVVVCESWKFRCR--RYWLK 88 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~--~~~~~ 88 (225)
.-.-.+|+|+|. |..+-++...|. +|+.+
T Consensus 91 siyc~~ws~~ge-liatgsndk~ik~l~fn~d 121 (350)
T KOG0641|consen 91 SIYCTAWSPCGE-LIATGSNDKTIKVLPFNAD 121 (350)
T ss_pred cEEEEEecCccC-eEEecCCCceEEEEecccc
Confidence 346789999997 777777665544 44444
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.32 E-value=3.8e+02 Score=25.07 Aligned_cols=60 Identities=18% Similarity=0.031 Sum_probs=43.2
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
..+-..+++|+++.|.+. ..++.|..|+...+ ...++. .+-.|.-+++-++|.++++...
T Consensus 260 s~v~~ca~sp~E~kLvlG-C~DgSiiLyD~~~~----~t~~~k-a~~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLG-CEDGSIILYDTTRG----VTLLAK-AEFIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred CcceEEecCcccceEEEE-ecCCeEEEEEcCCC----eeeeee-ecccceEEEEcCCCcEEEEEcC
Confidence 356778999999866544 45689999997642 223332 3446999999999998888776
No 329
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=35.07 E-value=3.7e+02 Score=24.90 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEe-CCCCEEEEEEecCCCCCceeEEeccCCCCC-CceEECCC
Q 047259 38 GQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCE-SWKFRCRRYWLKGPRQGRLESFIEHLPGGP-DNINLAPD 114 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P-d~i~~d~~ 114 (225)
.++|.++.....+.+.. ++..| ...+|.|+++..-|+. .....+..|++.++ . .|. .|..+ +-+.+.+.
T Consensus 255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l-~~~--~Pe~~rNT~~fsp~ 326 (561)
T COG5354 255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----L-RFY--FPEQKRNTIFFSPH 326 (561)
T ss_pred ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc----e-EEe--cCCcccccccccCc
Confidence 34555554433333322 32233 5677777776554444 56667777776542 2 222 22222 45666776
Q ss_pred CC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-
Q 047259 115 GS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE- 192 (225)
Q Consensus 115 G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~- 192 (225)
++ +.++.++.- .+.+..+|+-|+.+..-.. +| .-+..+.
T Consensus 327 ~r~il~agF~nl----------------------------------~gni~i~~~~~rf~~~~~~-~~----~n~s~~~w 367 (561)
T COG5354 327 ERYILFAGFDNL----------------------------------QGNIEIFDPAGRFKVAGAF-NG----LNTSYCDW 367 (561)
T ss_pred ccEEEEecCCcc----------------------------------ccceEEeccCCceEEEEEe-ec----CCceEeec
Confidence 66 455555521 5677788887766543221 11 1122332
Q ss_pred -eCCEEEEeeCCCCe
Q 047259 193 -FEDNLYMASIQSKF 206 (225)
Q Consensus 193 -~~~~Lyv~~~~~~~ 206 (225)
.++..|.+++.+.+
T Consensus 368 spd~qF~~~~~ts~k 382 (561)
T COG5354 368 SPDGQFYDTDTTSEK 382 (561)
T ss_pred cCCceEEEecCCCcc
Confidence 25666666666655
No 330
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.37 E-value=3.8e+02 Score=24.51 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=50.7
Q ss_pred EEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCC-CceEECCCCCE
Q 047259 40 LLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGP-DNINLAPDGSF 117 (225)
Q Consensus 40 v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P-d~i~~d~~G~l 117 (225)
+-.+|..++.+..- ...-.+--..+++|..+.++++-+-++.|..++.... ..+ ..+.-.|.| ..+..=+.|.+
T Consensus 135 ~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~--~~~--v~elnhg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 135 VKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL--TSR--VVELNHGCPVESVLALPSGSL 210 (487)
T ss_pred EEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--Cce--eEEecCCCceeeEEEcCCCCE
Confidence 34445554444322 2334567788899988889999999999999998642 122 122122334 56666677777
Q ss_pred EEEeecC
Q 047259 118 WVALIKM 124 (225)
Q Consensus 118 ~v~~~~~ 124 (225)
.++..++
T Consensus 211 iasAgGn 217 (487)
T KOG0310|consen 211 IASAGGN 217 (487)
T ss_pred EEEcCCC
Confidence 7777664
No 331
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=33.18 E-value=2.4e+02 Score=25.36 Aligned_cols=69 Identities=14% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC--CCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259 3 NDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE--LEETTVLHEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 3 ndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
|-+++.| ++.|..|-+. .++|..+|.+ +..+-.+-..-.--..+.|+|....++.+....
T Consensus 276 n~~~fnp~~~~ilAT~S~-----------------D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSA-----------------DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred eEEEeCCCCCceEEeccC-----------------CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Q ss_pred CEEEEEEec
Q 047259 80 FRCRRYWLK 88 (225)
Q Consensus 80 ~~I~~~~~~ 88 (225)
+++..+|+.
T Consensus 339 ~rl~vWDls 347 (422)
T KOG0264|consen 339 RRLNVWDLS 347 (422)
T ss_pred CcEEEEecc
No 332
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=1.6e+02 Score=29.66 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=32.0
Q ss_pred cCCCCcEEEEEeCCCCeEEEEecCc---cccceeEEecCCCEEEEEeCCCC---EEEEEEec
Q 047259 33 EGKPHGQLLKYDPELEETTVLHEGF---YFANGVALSKDENFVVVCESWKF---RCRRYWLK 88 (225)
Q Consensus 33 ~~~~~g~v~~~d~~~~~~~~~~~~~---~~pnGi~~~~dg~~Lyv~~~~~~---~I~~~~~~ 88 (225)
....+|+...+|.+.++--+..... ..-++|+|+||...-.++.+... .|...|+.
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 4567888888998633211111211 34679999999865444444433 44445543
No 333
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=33.02 E-value=3.1e+02 Score=23.33 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=22.0
Q ss_pred eEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEee
Q 047259 161 ARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMAS 201 (225)
Q Consensus 161 ~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~ 201 (225)
..|.++|+. .++...-..|... ..-..++..+++|||..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~--r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLG--TAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ceEEEEECCCCceeECccCCCCc--CCCceEEEECCEEEEEe
Confidence 579999997 4554432333211 11233445688999863
No 334
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.82 E-value=3.8e+02 Score=24.38 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=38.2
Q ss_pred EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc-ccceeEEecCCCEEEEEeCCCCEEE
Q 047259 5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY-FANGVALSKDENFVVVCESWKFRCR 83 (225)
Q Consensus 5 v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~pnGi~~~~dg~~Lyv~~~~~~~I~ 83 (225)
+++.+||+.++|-.. .-.|..++.++.+-.....+.. --.+++|-..-..||.+... +.|.
T Consensus 208 ~avS~Dgkylatgg~-----------------d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D-rsvk 269 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGR-----------------DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD-RSVK 269 (479)
T ss_pred EEEcCCCcEEEecCC-----------------CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC-CceE
Confidence 677788876666332 2244566665544333333332 34678887766678877654 5666
Q ss_pred EEEec
Q 047259 84 RYWLK 88 (225)
Q Consensus 84 ~~~~~ 88 (225)
.+.++
T Consensus 270 vw~~~ 274 (479)
T KOG0299|consen 270 VWSID 274 (479)
T ss_pred EEehh
Confidence 66654
No 335
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=32.65 E-value=1.1e+02 Score=18.26 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=19.9
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.-+.|+|..+.|-++ +.+++|+.|++++
T Consensus 15 ~~~~w~P~mdLiA~~-t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 15 SCMSWCPTMDLIALG-TEDGEVLVYRLNW 42 (47)
T ss_pred EEEEECCCCCEEEEE-ECCCeEEEEECCC
Confidence 467899998844444 4578888888754
No 336
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=32.53 E-value=3.2e+02 Score=23.34 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
..++.++.++.+..+.......+. -|..++++|++ +-++.-..++|.+|.++.
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~~~-~ns~~~snd~~-~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQNLT-QNSLHYSNDPS-WGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred CcceeEEEEecCcccceeeccccc-eeeeEEcCCCc-eEEEecCCCcceEEEeCC
Confidence 456777777765333222222222 67899999998 445555668999999975
No 337
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=32.42 E-value=99 Score=28.88 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEE
Q 047259 1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFV 72 (225)
Q Consensus 1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~L 72 (225)
++|.|...|.|++.+.-.- ....|.+..||.+-..++.+. ......+-+.|+|-|+++
T Consensus 494 ~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 494 FANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred ccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCCCEE
Confidence 5788888999886554221 123789999998633444443 234567899999999844
No 338
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.34 E-value=3.4e+02 Score=26.45 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCcEEEEEeCCC----CeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 35 KPHGQLLKYDPEL----EETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 35 ~~~g~v~~~d~~~----~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
...|.|..||... +.+..+-+...-.|-+.|++-.-.+.++-+..+.|-.||+..
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 3478888888742 111122355677899999988878999999999999999974
No 339
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=31.33 E-value=3.7e+02 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.3
Q ss_pred EEeCCEEEEeeCCCCeEEEEeCCCcccccCCCCC
Q 047259 191 VEFEDNLYMASIQSKFVGKLPLNTPEAELAPKAT 224 (225)
Q Consensus 191 ~~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~~~ 224 (225)
+..+.+=.|+..-.+.|.+-++.+.+.--||..|
T Consensus 406 iRFd~krIVSGaYDGkikvWdl~aaldpra~~~~ 439 (499)
T KOG0281|consen 406 IRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAST 439 (499)
T ss_pred eeecCceeeeccccceEEEEecccccCCcccccc
Confidence 4568888999999999999999888776666554
No 340
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=31.04 E-value=1.1e+02 Score=29.67 Aligned_cols=48 Identities=17% Similarity=-0.039 Sum_probs=31.7
Q ss_pred EEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCEEEEEEe
Q 047259 39 QLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWL 87 (225)
Q Consensus 39 ~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~ 87 (225)
.+..+|.-+|+.-. +......-.|+-|.+|=+ -.++.++.++|..+.+
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKL 712 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeecccch-hheeecCCceEEEEEC
Confidence 34445544454322 223344568999999987 5688899999988765
No 341
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.37 E-value=5.4e+02 Score=25.00 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=50.4
Q ss_pred CCCcEEEEEeCCCCeEEEEe--cCcc-ccceeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEecc----C-CCC
Q 047259 35 KPHGQLLKYDPELEETTVLH--EGFY-FANGVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIEH----L-PGG 105 (225)
Q Consensus 35 ~~~g~v~~~d~~~~~~~~~~--~~~~-~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~----~-~g~ 105 (225)
..+-++||++.+..+...+. .++. ---+++++..+-..+++-+.+..|..+.+... ....+.+|.-. . .--
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 45678899965433332222 2322 23467787777778888887766666665431 11112223110 0 113
Q ss_pred CCceEECCCCCEEEEeec
Q 047259 106 PDNINLAPDGSFWVALIK 123 (225)
Q Consensus 106 Pd~i~~d~~G~l~v~~~~ 123 (225)
-+..++.++..|..+...
T Consensus 466 IN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQ 483 (775)
T ss_pred ccceEecCCCceEEeccc
Confidence 578899998888887766
No 342
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=29.06 E-value=2.9e+02 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=23.3
Q ss_pred ceEEEEECCCCcEEEEE--ECCCCCccccee--EEEEeCCEEEEeeCCCCe
Q 047259 160 GARIVKVDTHGKIIMDF--NDPNATYISFVT--SAVEFEDNLYMASIQSKF 206 (225)
Q Consensus 160 ~~~V~~~d~~G~~~~~~--~~p~g~~~~~~t--~~~~~~~~Lyv~~~~~~~ 206 (225)
.|.|.++.-+ +.+..+ .+.+|..-.+.- =++..++.|||++.+...
T Consensus 73 TGiVyeI~~~-~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~Gkew 122 (291)
T PF06079_consen 73 TGIVYEIKGD-KAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSIGKEW 122 (291)
T ss_dssp T-EEEEEETT-EEEEEEE-BSTTTTESSB----EEEEETTEEEEE--SS-E
T ss_pred CceEEEEeCC-ceeceEEEeCCCCCccccccceeeEEeCCeeeeccCCCce
Confidence 5778887654 655554 343443211110 035679999999977443
No 343
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=28.95 E-value=3.7e+02 Score=22.93 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=62.0
Q ss_pred eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHH
Q 047259 63 VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLL 142 (225)
Q Consensus 63 i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~ 142 (225)
+.++-+.+ ..++-+..+.+..++...+ +. +..-..+..-..+.++.+|++.++....+-
T Consensus 58 ~Did~~s~-~liTGSAD~t~kLWDv~tG---k~-la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m---------------- 116 (327)
T KOG0643|consen 58 CDIDWDSK-HLITGSADQTAKLWDVETG---KQ-LATWKTNSPVKRVDFSFGGNLILASTDKQM---------------- 116 (327)
T ss_pred EEecCCcc-eeeeccccceeEEEEcCCC---cE-EEEeecCCeeEEEeeccCCcEEEEEehhhc----------------
Confidence 34444444 5577777777777776532 21 111113333468889999998887766320
Q ss_pred HhhhhhhhhhccCCCCcceEEEEECCC-------Cc-EEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCC
Q 047259 143 QAYPELINLLIPLGNDAGARIVKVDTH-------GK-IIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLN 213 (225)
Q Consensus 143 ~~~p~~~~~~~~~~~~~~~~V~~~d~~-------G~-~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~ 213 (225)
.. .+.|..+|-. ++ ....+..|+.+ ++.+... -+.-.|+...++.|.++++.
T Consensus 117 -------------g~--~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk----it~a~Wg~l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 117 -------------GY--TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK----ITSALWGPLGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred -------------Cc--ceEEEEEEccCChhhhcccCceEEecCCccc----eeeeeecccCCEEEEecCCCcEEEEEcc
Confidence 00 3344444321 32 25556665543 4544432 34555777777888888876
Q ss_pred C
Q 047259 214 T 214 (225)
Q Consensus 214 ~ 214 (225)
+
T Consensus 178 ~ 178 (327)
T KOG0643|consen 178 T 178 (327)
T ss_pred c
Confidence 5
No 344
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=28.75 E-value=85 Score=26.55 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=21.2
Q ss_pred ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 61 NGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.-++||||+..| +....++.|..|++-|
T Consensus 47 Rkl~WSpD~tlL-a~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 47 RKLAWSPDCTLL-AYAESTGTIRVFDLMG 74 (282)
T ss_pred eEEEECCCCcEE-EEEcCCCeEEEEeccc
Confidence 479999999855 4444568999998864
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=28.51 E-value=5.8e+02 Score=25.16 Aligned_cols=86 Identities=15% Similarity=-0.050 Sum_probs=44.0
Q ss_pred CCcEEEEEeCCCCeEEEEecCccccceeEEecCC-------CEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCC
Q 047259 36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDE-------NFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGP 106 (225)
Q Consensus 36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg-------~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~P 106 (225)
-...||++|...|++..-........=..+.|+. ..-|+.-+ .++|.|+|+.-. +...+..+. ....+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls-~n~lfriDpR~~--~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLS-DNSLFRIDPRLS--GNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEEC-CCceEEeccCCC--CCceeeccccccccCC
Confidence 3567999999888765432211111012222321 12455554 469999998621 122111111 11112
Q ss_pred --CceEECCCCCEEEEeecC
Q 047259 107 --DNINLAPDGSFWVALIKM 124 (225)
Q Consensus 107 --d~i~~d~~G~l~v~~~~~ 124 (225)
.-++.+.+|.|-|+....
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G 598 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKG 598 (794)
T ss_pred CceEEEecCCceEEEEeCCC
Confidence 356778888888877653
No 346
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=27.95 E-value=2.8e+02 Score=26.66 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259 4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTVLHEGFYFANGVALSKDENFVVVCESWKFRC 82 (225)
Q Consensus 4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I 82 (225)
+++++++|+|..|---. .......|+.++..+ .++..+....-.-.-|+|||||+ ...+.+.++.+
T Consensus 530 ~l~~s~~gnliASaCKS------------~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~ 596 (764)
T KOG1063|consen 530 ALAISPTGNLIASACKS------------SLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTV 596 (764)
T ss_pred EEEecCCCCEEeehhhh------------CCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-EEEEeecCceE
Q ss_pred EEEEe
Q 047259 83 RRYWL 87 (225)
Q Consensus 83 ~~~~~ 87 (225)
..|..
T Consensus 597 sl~~~ 601 (764)
T KOG1063|consen 597 SLYEV 601 (764)
T ss_pred Eeeee
No 347
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.75 E-value=1.6e+02 Score=24.68 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCCeEEEEe---cCccccceeEEecCCC-EEEEEeCCCCEEEEEEec
Q 047259 37 HGQLLKYDPELEETTVLH---EGFYFANGVALSKDEN-FVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~-~Lyv~~~~~~~I~~~~~~ 88 (225)
.|.|..+.-.+|+++... .....-|.|++.|.+- .+..|.+..+.|..++.+
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~ 134 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD 134 (299)
T ss_pred CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence 566666665556665543 2345679999999764 557777777877766665
No 348
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.48 E-value=6e+02 Score=24.93 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=38.7
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC--CC-CceEECCCCCEEEEeecCC
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG--GP-DNINLAPDGSFWVALIKMN 125 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g--~P-d~i~~d~~G~l~v~~~~~~ 125 (225)
.-.+.+||||++|-|+- -++.+..|-+++ ..-|.. +.| .| --|.+.+|+.+.|+....+
T Consensus 511 vL~v~~Spdgk~LaVsL-LdnTVkVyflDt-----lKFfls-LYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSL-LDNTVKVYFLDT-----LKFFLS-LYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred EEEEEEcCCCcEEEEEe-ccCeEEEEEecc-----eeeeee-ecccccceeEEeccCCcCeEEeccCCC
Confidence 34688999999665554 457888888875 222332 222 34 3667778888888887754
No 349
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=26.73 E-value=4.6e+02 Score=23.33 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=33.0
Q ss_pred CcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+.|-+||....++-.- ...+..-..+.+.|--+ +.++...+..+..+|+.+
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred CCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc
Confidence 45667777654333222 34567778899998765 666766666666677764
No 350
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=26.39 E-value=3.9e+02 Score=22.46 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=42.0
Q ss_pred CcEEEEEeCCCCeEE---EEecCcccc---ceeEEecCCCEEEEEeC-----CCCEEEEEEecCCCCCceeEEeccCCCC
Q 047259 37 HGQLLKYDPELEETT---VLHEGFYFA---NGVALSKDENFVVVCES-----WKFRCRRYWLKGPRQGRLESFIEHLPGG 105 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~---~~~~~~~~p---nGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~g~ 105 (225)
...+++||..+.+++ .....+..| ...+.- ++ .|||.-- ..+.+++|++... .++... ..+..
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~---~W~~~~-~~p~~ 160 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQ---EWFELP-DFPGE 160 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCC---CeeECC-CCCCC
Confidence 357888888766652 112233222 223332 33 5888643 2357999998643 333322 12221
Q ss_pred C--CceEECCCCCEEEEeec
Q 047259 106 P--DNINLAPDGSFWVALIK 123 (225)
Q Consensus 106 P--d~i~~d~~G~l~v~~~~ 123 (225)
+ ...++.-+++|||....
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGG 180 (323)
T ss_pred CCCcceEEEECCEEEEEcCC
Confidence 2 22333446789987654
No 351
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=26.35 E-value=5.4e+02 Score=24.03 Aligned_cols=50 Identities=6% Similarity=0.017 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
..++..++...+...+.. .+-..+..|+++|||+.|.++. +.|..|++++
T Consensus 123 d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~ 173 (541)
T KOG4547|consen 123 DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIET 173 (541)
T ss_pred ceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccC
Confidence 344444444433333332 2345678999999999666554 5899999875
No 352
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=25.95 E-value=4.4e+02 Score=22.88 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCeEEEEecCcc-ccceeEEecCCCEEEEEe
Q 047259 37 HGQLLKYDPELEETTVLHEGFY-FANGVALSKDENFVVVCE 76 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~~~~-~pnGi~~~~dg~~Lyv~~ 76 (225)
...|++||+.+++++.+..... .-.+.+.-.-++.|||.-
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 3579999999889987643211 112322222223588764
No 353
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=25.71 E-value=4.6e+02 Score=23.03 Aligned_cols=150 Identities=17% Similarity=0.114 Sum_probs=84.4
Q ss_pred CCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecC-CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259 34 GKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKD-ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL 111 (225)
Q Consensus 34 ~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~ 111 (225)
+-.+|.|-.||..++..-... .....-||+.|..+ +-....+-+..+.|..||+..........+. ..++.| -+++
T Consensus 46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~-f~~l 123 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTP-FICL 123 (376)
T ss_pred EecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCc-ceEe
Confidence 345788888887765432222 22344589998763 3234455556789999998642111111111 123223 3555
Q ss_pred CC--CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC--CCcEEEEEECCCCCcccce
Q 047259 112 AP--DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT--HGKIIMDFNDPNATYISFV 187 (225)
Q Consensus 112 d~--~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~--~G~~~~~~~~p~g~~~~~~ 187 (225)
|. ++++.-+..... . +...|+-.|- .-|.+..+... ....+
T Consensus 124 d~nck~~ii~~GtE~~------------------------------~--s~A~v~lwDvR~~qq~l~~~~eS---H~DDV 168 (376)
T KOG1188|consen 124 DLNCKKNIIACGTELT------------------------------R--SDASVVLWDVRSEQQLLRQLNES---HNDDV 168 (376)
T ss_pred eccCcCCeEEeccccc------------------------------c--CceEEEEEEeccccchhhhhhhh---ccCcc
Confidence 55 677777765511 1 1455655554 34444444321 12346
Q ss_pred eEEEE--eCCEEEEeeCCCCeEEEEeCCCcccccC
Q 047259 188 TSAVE--FEDNLYMASIQSKFVGKLPLNTPEAELA 220 (225)
Q Consensus 188 t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~~~~~ 220 (225)
|.+.+ .+-.|.++..-.+.|-.|+...+++|-+
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence 66665 3667778888888899998887766543
No 354
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=4.5e+02 Score=22.82 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=32.7
Q ss_pred ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
..+.+.++.+ .+|+++.. .-++.+++.+.......-+. ...|+..+..+.. ...||++..
T Consensus 88 l~~Dv~vse~--yvyvad~s-sGL~IvDIS~P~sP~~~~~l-nt~gyaygv~vsG-n~aYVadld 147 (370)
T COG5276 88 LFADVRVSEE--YVYVADWS-SGLRIVDISTPDSPTLIGFL-NTDGYAYGVYVSG-NYAYVADLD 147 (370)
T ss_pred hhheeEeccc--EEEEEcCC-CceEEEeccCCCCcceeccc-cCCceEEEEEecC-CEEEEeecc
Confidence 3467777754 79999954 56788888753111111111 1123334444442 247888864
No 355
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=25.37 E-value=6.2e+02 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=21.9
Q ss_pred cceeEEecCCCEEEEEeCCC----CEEEEEEecC
Q 047259 60 ANGVALSKDENFVVVCESWK----FRCRRYWLKG 89 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~----~~I~~~~~~~ 89 (225)
..+.+|.+|++.||.+.... .+|++..+.+
T Consensus 176 ~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt 209 (682)
T COG1770 176 SGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGT 209 (682)
T ss_pred ccceEEecCCCeEEEEEEcCCCCcceEEEEecCC
Confidence 56889999999998776543 3666666654
No 356
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=24.94 E-value=49 Score=23.11 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE
Q 047259 12 SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV 52 (225)
Q Consensus 12 ~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 52 (225)
-||||-.- ....|..++..+.+.++||.+.+. |.++-
T Consensus 32 ~iY~Ta~l---d~A~w~AELA~G~g~~RiYiVEPt-G~~Ed 68 (100)
T PF12120_consen 32 HIYFTATL---DAAIWGAELAAGEGRGRIYIVEPT-GPFED 68 (100)
T ss_dssp -EEEESBH---HHHHHHHHHS-SSS--EEEEEEES-S--EE
T ss_pred EEEEeecc---chhHHHHHHhcCCCCCcEEEEccC-CCccc
Confidence 47888542 223456667778888999999885 66554
No 357
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=23.61 E-value=4.9e+02 Score=22.60 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=34.6
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCC----ceEECCCCCEEEEeec
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPD----NINLAPDGSFWVALIK 123 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd----~i~~d~~G~l~v~~~~ 123 (225)
.+..|+.++ |+++||++.. +-.+.+++.+. ...+++.. ...|+ .+++.. ..-||+++.
T Consensus 129 gyaygv~vs--Gn~aYVadld-dgfLivdvsdp---ssP~lagr-ya~~~~d~~~v~ISG-n~AYvA~~d 190 (370)
T COG5276 129 GYAYGVYVS--GNYAYVADLD-DGFLIVDVSDP---SSPQLAGR-YALPGGDTHDVAISG-NYAYVAWRD 190 (370)
T ss_pred ceEEEEEec--CCEEEEeecc-CcEEEEECCCC---CCceeeee-eccCCCCceeEEEec-CeEEEEEeC
Confidence 567788887 6799999974 56677887653 12123321 11233 345543 257888766
No 358
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=23.46 E-value=4.3e+02 Score=21.84 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=35.8
Q ss_pred cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEE-----eccCCCCCCceEECCC-CCEEEEe
Q 047259 58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESF-----IEHLPGGPDNINLAPD-GSFWVAL 121 (225)
Q Consensus 58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-----~~~~~g~Pd~i~~d~~-G~l~v~~ 121 (225)
..--||.+-|..+.||-. ...++||.+++.++ ..... ...+.+.+-++.|.|- .+|-|..
T Consensus 27 e~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG---~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGL-GSTGRLYTINPATG---AATPVGASPLTVALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred CeEEEEEeecCCCCEEEE-eCCCcEEEEECCCC---eEEEeecccccccccCceEEEecCcccCcEEEEc
Confidence 345689999987778866 45689999998753 22222 1112333445555552 4565543
No 359
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=22.98 E-value=1.7e+02 Score=20.70 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=13.6
Q ss_pred CCcEEEcCCCcEEEEcCC
Q 047259 2 TNDVIEASDGSLYFTVSS 19 (225)
Q Consensus 2 pndv~~~~dG~iy~td~~ 19 (225)
+++..+.+||+|-|+|.|
T Consensus 46 i~ayrI~~D~tlaFSd~H 63 (100)
T PF06903_consen 46 IDAYRITPDGTLAFSDTH 63 (100)
T ss_pred eeeEEEeCCCeEEEecce
Confidence 456677778888888887
No 360
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=22.23 E-value=5.2e+02 Score=22.41 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=21.5
Q ss_pred eEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEee
Q 047259 161 ARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMAS 201 (225)
Q Consensus 161 ~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~ 201 (225)
..|.++|+. .++...-..|... . ....++..+++|||-.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~-~-~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLG-T-AGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCC-C-CcceEEEECCEEEEEe
Confidence 478999997 4554322233211 1 1223455688999754
No 361
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=22.20 E-value=6.1e+02 Score=23.16 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=56.2
Q ss_pred EeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259 75 CESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL 152 (225)
Q Consensus 75 ~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~ 152 (225)
+.+-++.+..+++..+ .. +.. ..|..+..+++|+.++ +|+...........+-. .|..
T Consensus 193 TaS~D~t~k~wdlS~g---~L--Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~-----------~~~~---- 252 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLG---VL--LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK-----------LSGQ---- 252 (476)
T ss_pred EecCCceEEEEEeccc---ee--eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc-----------CCcc----
Confidence 4455677777887642 22 111 2566678999998765 67665543211100000 0000
Q ss_pred ccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeC
Q 047259 153 IPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPL 212 (225)
Q Consensus 153 ~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~ 212 (225)
.. .-.+-..+.++.....+....+. +.+|.++. .+|.|.++.-..+.+-+-+.
T Consensus 253 ---~~--~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 253 ---SA--GVNQKGRHEENTQINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ---cc--cccccccccccceeeeeccccCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 00 11122344455554555432221 35666655 37788887777777666554
No 362
>PTZ00486 apyrase Superfamily; Provisional
Probab=22.10 E-value=2.3e+02 Score=24.90 Aligned_cols=28 Identities=11% Similarity=0.047 Sum_probs=19.1
Q ss_pred ceeEEec----CCCEEEEEeCCCCEEEEEEecC
Q 047259 61 NGVALSK----DENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 61 nGi~~~~----dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.|+-+|. +|+ ||..|-.++-|+++..++
T Consensus 113 RGmELSELv~Fngk-Lys~DDrTGiVy~i~~~~ 144 (352)
T PTZ00486 113 RGMELSELVSFNGK-LYGFDDRTGIVYEIDIDK 144 (352)
T ss_pred CCcchhhhheeCCE-EEEEeCCceEEEEEEcCC
Confidence 3454443 454 888888888888887554
No 363
>PLN02153 epithiospecifier protein
Probab=22.00 E-value=5e+02 Score=22.07 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.4
Q ss_pred cEEEEEeCCCCeEEEEe
Q 047259 38 GQLLKYDPELEETTVLH 54 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~ 54 (225)
..+++||+.+.+++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46889999888888764
No 364
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90 E-value=2.4e+02 Score=25.22 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=15.5
Q ss_pred ceEEEEECCCCcEEEEEECC
Q 047259 160 GARIVKVDTHGKIIMDFNDP 179 (225)
Q Consensus 160 ~~~V~~~d~~G~~~~~~~~p 179 (225)
...|.++|.+|++++++..|
T Consensus 165 gP~l~~f~~~Gk~~~~~~~~ 184 (391)
T COG4222 165 GPYLLEFDANGKLVRVLEVP 184 (391)
T ss_pred CcceEEECCCCccccccccc
Confidence 55788999999888877544
No 365
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=21.37 E-value=22 Score=18.05 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=5.8
Q ss_pred EEecCCCEEE
Q 047259 64 ALSKDENFVV 73 (225)
Q Consensus 64 ~~~~dg~~Ly 73 (225)
.|||+|+ ||
T Consensus 7 ~FSp~Gr-l~ 15 (23)
T PF10584_consen 7 TFSPDGR-LF 15 (23)
T ss_dssp SBBTTSS-BH
T ss_pred eECCCCe-EE
Confidence 4677776 43
No 366
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=4.1e+02 Score=24.45 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=37.5
Q ss_pred EEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259 39 QLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLK 88 (225)
Q Consensus 39 ~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~ 88 (225)
.||.++..+++++.+.+. .....-+.|+++|+.|-|. +..+.|..+|..
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG-~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVG-TSDGTVQIWDVK 247 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEe-ecCCeEEEEehh
Confidence 789999988888777654 5678889999999866444 455788888764
No 367
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=21.16 E-value=3.8e+02 Score=23.17 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=30.4
Q ss_pred ceEEEEECCC--CcEEEEEECCCCCc-ccceeEEEEe--C---CEEEEeeCCCCeEEEEeCCCc
Q 047259 160 GARIVKVDTH--GKIIMDFNDPNATY-ISFVTSAVEF--E---DNLYMASIQSKFVGKLPLNTP 215 (225)
Q Consensus 160 ~~~V~~~d~~--G~~~~~~~~p~g~~-~~~~t~~~~~--~---~~Lyv~~~~~~~i~~~~~~~~ 215 (225)
...|..+|.+ |+++..+..+.+.. +..++ +++. + .++|.++.. +.|+|+++...
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~-~~D~d~DG~~D~vYaGDl~-GnlwR~dl~~~ 241 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPA-VVDSDGDGYVDRVYAGDLG-GNLWRFDLSSA 241 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEE-EE-TTSSSEE-EEEEEETT-SEEEEEE--TT
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccE-EEeccCCCeEEEEEEEcCC-CcEEEEECCCC
Confidence 5678888875 89888887654431 22222 1221 2 679999986 99999999764
No 368
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=20.92 E-value=6.2e+02 Score=22.80 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=38.2
Q ss_pred cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259 60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK 123 (225)
Q Consensus 60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~ 123 (225)
-.=++|.|--.-+..+....+.|..++..++ ..-+-++ .|..--.+.+..+|.++++...
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs~l~Ttck 193 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG---EALITLD-HPDMVYSMSFNRDGSLLCTTCK 193 (472)
T ss_pred EEEEeecccchhhHhhccCCceEEEEeccCC---ceeeecC-CCCeEEEEEeccCCceeeeecc
Confidence 3446777644446677778888888887542 2211121 2334457889999999988766
No 369
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.87 E-value=4.6e+02 Score=23.25 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259 37 HGQLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG 89 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~ 89 (225)
.+.|-.+|..++.+-. +.....+-.|++|+|.|++| ++-..+..+..++++.
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKN 365 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEecc
Confidence 3444455555554332 34567789999999999865 4444566777777763
No 370
>PRK10115 protease 2; Provisional
Probab=20.86 E-value=7.5e+02 Score=23.75 Aligned_cols=51 Identities=8% Similarity=-0.088 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCC--eEEEEecCccccc--eeEEecCCCEEEEEeCC--CCEEEEEEe
Q 047259 37 HGQLLKYDPELE--ETTVLHEGFYFAN--GVALSKDENFVVVCESW--KFRCRRYWL 87 (225)
Q Consensus 37 ~g~v~~~d~~~~--~~~~~~~~~~~pn--Gi~~~~dg~~Lyv~~~~--~~~I~~~~~ 87 (225)
.-.||+.+..++ +-+++.+....+. ++..+.|++++++.... ++.++.++.
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 357888888766 4445544321122 34455688877655443 246777764
No 371
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=20.73 E-value=4.6e+02 Score=23.10 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=15.6
Q ss_pred ccceeEEecCCCEEEEEeCC
Q 047259 59 FANGVALSKDENFVVVCESW 78 (225)
Q Consensus 59 ~pnGi~~~~dg~~Lyv~~~~ 78 (225)
.-.|+++.|||++.-++++.
T Consensus 135 ~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CceeEEECCCCceeeeeecc
Confidence 34899999999977666653
No 372
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=20.45 E-value=3.7e+02 Score=26.25 Aligned_cols=47 Identities=13% Similarity=-0.082 Sum_probs=27.3
Q ss_pred EEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEeCCCC-EEEEEEec
Q 047259 40 LLKYDPELEETTVLHEG----FYFANGVALSKDENFVVVCESWKF-RCRRYWLK 88 (225)
Q Consensus 40 v~~~d~~~~~~~~~~~~----~~~pnGi~~~~dg~~Lyv~~~~~~-~I~~~~~~ 88 (225)
|-.|+..+|+......+ .+-+--+.++|.| +|++.+..+ .|-.||.-
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEec
Confidence 44445555665555432 2445668888886 777776655 44456653
No 373
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=20.24 E-value=6.2e+02 Score=22.54 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=55.4
Q ss_pred CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCC
Q 047259 3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESWK 79 (225)
Q Consensus 3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~~ 79 (225)
+.+...+.|+ ++++++.. .-.++.|+......+.+ ...-..|+.|.+..+.....|++..
T Consensus 66 ~~~~~s~~~~llAv~~~~K----------------~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dka- 128 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSK----------------QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKA- 128 (390)
T ss_pred cccccCCCceEEEEEeCCC----------------ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeec-
Confidence 4455555665 66666651 12356665432212222 2334578899998888888888864
Q ss_pred CEEEEEEecCCCCCceeEEeccCC------CCCCc---eEECCCCCEEEEeecC
Q 047259 80 FRCRRYWLKGPRQGRLESFIEHLP------GGPDN---INLAPDGSFWVALIKM 124 (225)
Q Consensus 80 ~~I~~~~~~~~~~~~~~~~~~~~~------g~Pd~---i~~d~~G~l~v~~~~~ 124 (225)
+-++.|+.-....+..+....++. -.||+ |+-|.|+.|+|...+.
T Consensus 129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA 182 (390)
T ss_pred CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc
Confidence 567777653210122222222211 12443 4555666777766663
No 374
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=20.04 E-value=5.5e+02 Score=21.84 Aligned_cols=53 Identities=13% Similarity=-0.051 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCeEEEEec-Cccccce------eEEecCCCEEEEEeCCCCEEEEEEecCC
Q 047259 37 HGQLLKYDPELEETTVLHE-GFYFANG------VALSKDENFVVVCESWKFRCRRYWLKGP 90 (225)
Q Consensus 37 ~g~v~~~d~~~~~~~~~~~-~~~~pnG------i~~~~dg~~Lyv~~~~~~~I~~~~~~~~ 90 (225)
...|..+|.+++++..... .-.+||| .....|..+||.. ....+|..++.+|.
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~-~~~~~l~~~n~~G~ 125 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNS-YAFPKLFLFNSQGE 125 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEE-GGGTEEEEE-TT--
T ss_pred cceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEec-CCcceEEEEcCCCe
Confidence 3688999988787654321 1124554 5666776667766 55568888887653
No 375
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=20.02 E-value=5.4e+02 Score=21.78 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCeEEEEecCccccc-ee-EE-ecCCCEEEEEe
Q 047259 38 GQLLKYDPELEETTVLHEGFYFAN-GV-AL-SKDENFVVVCE 76 (225)
Q Consensus 38 g~v~~~d~~~~~~~~~~~~~~~pn-Gi-~~-~~dg~~Lyv~~ 76 (225)
..+++||+.+++++.+......+. |. +. .-++ .||+.-
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g-~IYviG 125 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNG-QAYFTG 125 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCC-EEEEEc
Confidence 468999998888888753222221 22 12 2344 488863
Done!