BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047260
(784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 145/287 (50%), Gaps = 13/287 (4%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
+ +S V FS DG+ +AS+ D+ V LWN + Q T H S V V F P+
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDG 151
Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621
+A+AS DK+V+LW+ N Q TGHSS + + F P + D D ++ W+
Sbjct: 152 QTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 208
Query: 622 INPFLCTHITKGGTAQVR---FQPRIGQLLAAASD-KVVSIFDIETDRQTHSLQGHAELV 677
N L +T G ++ VR F P GQ +A+ASD K V +++ + +L GH+ V
Sbjct: 209 RNGQLLQTLT-GHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 265
Query: 678 NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736
N + + +G +AS S + VK+W+ +G+ +Q L+ + + F P T+
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 737 SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+++LWN T+ H + + +A SP +ASAS D +VKLW
Sbjct: 325 KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 143/286 (50%), Gaps = 11/286 (3%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
+ +S V FS DG+ +AS+ D+ V LWN + Q T H S V V F P+
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDG 110
Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621
+A+AS DK+V+LW+ N Q TGHSS + + F P + D D ++ W+
Sbjct: 111 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 167
Query: 622 INPFLCTHITKGGTA--QVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVN 678
N L +T ++ V F P GQ +A+AS DK V +++ + +L GH+ V
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 679 YICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737
+ + +G +AS S + VK+W+ +G+ +Q L+ + + + F P T+
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 738 SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+++LWN T+ H + + +A SP +ASAS D +VKLW
Sbjct: 285 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 11/286 (3%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
+ +S V FS DG+ +AS+ D+ V LWN + Q T H S V V FRP+
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621
+A+AS DK+V+LW+ N Q TGHSS + + F P + D D ++ W+
Sbjct: 275 QTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 331
Query: 622 INPFLCTHITKGGTA--QVRFQPRIGQLLAAASD-KVVSIFDIETDRQTHSLQGHAELVN 678
N +T ++ V F P GQ +A+ASD K V +++ + +L GH+ V
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 389
Query: 679 YICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737
+ + +G +AS S + VK+W+ +G+ +Q L+ + + F P T+
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 738 SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+++LWN T+ H + + +A SP +ASAS D +VKLW
Sbjct: 449 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 11/289 (3%)
Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
E + + +S V FS DG+ +AS+ D+ V LWN + Q T H S V V F
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFS 66
Query: 559 PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
P+ +A+AS DK+V+LW+ N Q TGHSS + + F P + D D ++
Sbjct: 67 PDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSPDGQTIASASD-DKTVK 123
Query: 619 YWSINPFLCTHITKGGTA--QVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAE 675
W+ N L +T ++ V F P GQ +A+AS DK V +++ + +L GH+
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 181
Query: 676 LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
V + + +G +AS S + VK+W+ +G+ +Q L+ + + F P T+
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+++LWN T+ H + ++ +A P +ASAS D +VKLW
Sbjct: 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 139/285 (48%), Gaps = 9/285 (3%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
+ +S V FS DG+ +AS+ D+ V LWN + Q T H S V V F P+
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDG 356
Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621
+A+AS DK+V+LW+ N Q TGHSS + + F P + D D ++ W+
Sbjct: 357 QTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWN 413
Query: 622 INPFLCTHITKGGTA--QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNY 679
N L +T ++ V F P + +A+ DK V +++ + +L GH+ V
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG 472
Query: 680 ICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS 738
+ + +G +AS S + VK+W+ +G+ +Q L+ + + F P T+ +
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 739 LELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
++LWN T+ H + + +A SP +ASAS D +VKLW
Sbjct: 532 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 13/247 (5%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
+ +S V FS DG+ +AS+ D+ V LWN + Q T H S V V F P+
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDG 397
Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621
+A+AS DK+V+LW+ N Q TGHSS + + F P + D D ++ W+
Sbjct: 398 QTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLWN 454
Query: 622 INPFLCTHITKGGTAQVR---FQPRIGQLLAAASD-KVVSIFDIETDRQTHSLQGHAELV 677
N L +T G ++ VR F P GQ +A+ASD K V +++ + +L GH+ V
Sbjct: 455 RNGQLLQTLT-GHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 511
Query: 678 NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736
+ + +G +AS S + VK+W+ +G+ +Q L+ + + F P T+
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570
Query: 737 SSLELWN 743
+++LWN
Sbjct: 571 KTVKLWN 577
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF 723
++ + L+ H+ V + + +G +AS S + VK+W+ +G+ +Q L+ + + F
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 65
Query: 724 HPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
P T+ +++LWN T+ H + + +A SP +ASAS D +VKLW
Sbjct: 66 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 160/323 (49%), Gaps = 34/323 (10%)
Query: 484 SPEHQKQPT-----KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT 538
SPE Q +PT F G ++ V+ FS +G+ LASS D+ + +W
Sbjct: 5 SPEFQSKPTPVKPNYALKFTLAGHTKA----VSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598
+ E T HK ++DV + +S+ L +AS DK++++WD ++ C + GHS+ +
Sbjct: 61 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCC 119
Query: 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT---AQVRFQPRIGQLLAAAS-DK 654
+F+P +++L D ++ W + C + + V F R G L+ ++S D
Sbjct: 120 NFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDG 177
Query: 655 VVSIFDIETDRQTHSL-QGHAELVNYICWDTNGDY-LASVSQNLVKVWSMASGECIQELS 712
+ I+D + + +L V+++ + NG Y LA+ N +K+W + G+C++ +
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 713 SNGNQFHSCVFHPSYSTLLVVGG---ISSLE-----LWNMAENKSM-TIAAHENIISALA 763
+ N+ + C+F + V GG +S E +WN+ + + + H +++ + A
Sbjct: 238 GHKNEKY-CIF----ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 764 QSPVTGMVASAS--HDSSVKLWK 784
P ++ASA+ +D ++KLWK
Sbjct: 293 CHPTENIIASAALENDKTIKLWK 315
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 161/329 (48%), Gaps = 30/329 (9%)
Query: 474 GRE-LYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVV 532
GRE LY S +P F G ++ V+ FS +G+ LASS D+ +
Sbjct: 10 GRENLYFQGTQSKPTPVKPNYALKFTLAGHTKA----VSSVKFSPNGEWLASSSADKLIK 65
Query: 533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS 592
+W + E T HK ++DV + +S+ L +AS DK++++WD ++ C + GHS
Sbjct: 66 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHS 124
Query: 593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT---AQVRFQPRIGQLLA 649
+ + +F+P +++L D ++ W + C + + V F R G L+
Sbjct: 125 NYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIV 182
Query: 650 AAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDTNGDY-LASVSQNLVKVWSMASGE 706
++S D + I+D + + +L V+++ + NG Y LA+ N +K+W + G+
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 242
Query: 707 CIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE-----LWNMAENKSM-TIAAHEN 757
C++ + + N+ + C+F + V GG +S E +WN+ + + + H +
Sbjct: 243 CLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
Query: 758 IISALAQSPVTGMVASAS--HDSSVKLWK 784
++ + A P ++ASA+ +D ++KLWK
Sbjct: 298 VVISTACHPTENIIASAALENDKTIKLWK 326
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 150/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + +C
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 82
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 779 SVKLW 783
V +W
Sbjct: 263 MVYIW 267
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T T H V+ V F + S
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 224
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Query: 677 V 677
V
Sbjct: 285 V 285
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 305 DKTIKLW 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 110 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 168 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 227 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 281
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWS-SDSNL 103
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 223
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 779 SVKLW 783
V +W
Sbjct: 284 LVYIW 288
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 245
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305
Query: 677 V 677
V
Sbjct: 306 V 306
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 325
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 326 DKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 166 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 279
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWS-SDSNL 101
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 221
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 779 SVKLW 783
V +W
Sbjct: 282 LVYIW 286
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 243
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Query: 677 V 677
V
Sbjct: 304 V 304
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 323
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 324 DKTIKLW 330
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 150/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + +C
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 123/245 (50%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 82
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L + L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 779 SVKLW 783
V +W
Sbjct: 263 MVYIW 267
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T T H V+ V F + S
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN+++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDY 224
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Query: 677 V 677
V
Sbjct: 285 V 285
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 305 DKTIKLW 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 92 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 150 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 263
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWS-SDSNL 85
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 205
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 779 SVKLW 783
V +W
Sbjct: 266 LVYIW 270
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 227
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 677 V 677
V
Sbjct: 288 V 288
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 308 DKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 91 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 149 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 262
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 84
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 144
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 204
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 779 SVKLW 783
V +W
Sbjct: 265 LVYIW 269
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 226
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286
Query: 677 V 677
V
Sbjct: 287 V 287
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 306
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 307 DKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 92 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 150 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 263
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 85
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 205
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 779 SVKLW 783
V +W
Sbjct: 266 LVYIW 270
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 227
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 677 V 677
V
Sbjct: 288 V 288
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 308 DKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 85 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 143 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 256
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 78
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 198
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 779 SVKLW 783
V +W
Sbjct: 259 LVYIW 263
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 220
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 221 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 280
Query: 677 V 677
V
Sbjct: 281 V 281
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 241
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 300
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 301 DKTIKLW 307
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 87 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 145 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 258
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 80
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 140
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 200
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 779 SVKLW 783
V +W
Sbjct: 261 LVYIW 265
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 222
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 677 V 677
V
Sbjct: 283 V 283
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 302
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 303 DKTIKLW 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 86 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 144 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 257
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 79
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 779 SVKLW 783
V +W
Sbjct: 260 LVYIW 264
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 221
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 677 V 677
V
Sbjct: 282 V 282
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 302 DKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 86 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 144 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 257
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 79
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 779 SVKLW 783
V +W
Sbjct: 260 LVYIW 264
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 221
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 677 V 677
V
Sbjct: 282 V 282
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 302 DKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 82 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 140 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 253
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H V+ V+F PN LA++S DK +++W A + F + +GH I + + ++L
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SSDSNL 75
Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETD 664
+D ++ W ++ C KG + V F P+ +++ + D+ V I+D++T
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 135
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV- 722
+ +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N S V
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 195
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASASHDS 778
F P+ +L ++L+LW+ ++ K + T H+N A VTG + S S D+
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 779 SVKLW 783
V +W
Sbjct: 256 LVYIW 260
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 217
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277
Query: 677 V 677
V
Sbjct: 278 V 278
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
+L GH + V+ + + NG++LAS S + L+K+W G+ + +S + +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ L+ +L++W+++ K + T+ H N + +P + ++ S S D SV++W
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 297
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 298 DKTIKLW 304
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LA+S D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KLWK
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 11/249 (4%)
Query: 544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK 603
T H V+ V+F PN LA +S DK +++W A + F + +GH I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SS 78
Query: 604 KTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFD 660
++L +D ++ W ++ C KG + V F P+ +++ + D+ V I+D
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH 719
++T + +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 720 SCV-FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASA 774
S V F P+ +L ++L+LW+ ++ K + T H+N A VTG + S
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 775 SHDSSVKLW 783
S D+ V +W
Sbjct: 259 SEDNLVYIW 267
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 224
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 677 V 677
V
Sbjct: 285 V 285
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTD 554
C I N V+ FS +GK + ++ D + LW+ L+T + ++ K +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF-CFCDN 613
+ + S D V +W+ Q GH+ ++S HP + + +N
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 614 DNEIQYW 620
D I+ W
Sbjct: 305 DKTIKLW 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 124/303 (40%), Gaps = 27/303 (8%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
S VT F ++ S+ D + +W+ +T E T + H V D+ F + LA+
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
S D +++LWD C + GH + S+ P D D I+ W +
Sbjct: 168 CSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGY 225
Query: 627 CTHITKGGTAQVRF-QP-RIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWD 683
C G VR +P + G L+A+ S D+ V ++ + T L+ H +V I W
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 684 TNGDY---------------------LASVSQNLVKVWSMASGECIQELSSNGNQFHSCV 722
Y L+ +K+W +++G C+ L + N +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 345
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVK 781
FH +L +L +W+ + M T+ AHE+ +++L V + S D +VK
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 782 LWK 784
+W+
Sbjct: 406 VWE 408
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 99/263 (37%), Gaps = 66/263 (25%)
Query: 587 AYTGHSSPIMSLDFHP-----------------------------KKTD----------- 606
A +GH SP+ + FHP TD
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 607 -LFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIE 662
L C D I+ W F C G + V P +++A+ DK + +++++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC 721
T + GH E V + + +G +AS S + V+VW +A+ EC EL + +
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 722 VFHP--SYSTLLVVGGIS------------------SLELWNMAENKS-MTIAAHENIIS 760
+ P SYS++ G ++++W+++ MT+ H+N +
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342
Query: 761 ALAQSPVTGMVASASHDSSVKLW 783
+ + S + D ++++W
Sbjct: 343 GVLFHSGGKFILSCADDKTLRVW 365
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 11/249 (4%)
Query: 544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK 603
T H V+ V+F PN LA++S DK +++W A + F + +GH I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SS 78
Query: 604 KTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFD 660
++L +D ++ W ++ C KG + V F P+ +++ + D+ V I+D
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH 719
++T + +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 720 SCV-FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASA 774
S V F P+ +L ++L+LW+ ++ K + T H+N A VTG + S
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 775 SHDSSVKLW 783
S D+ V +W
Sbjct: 259 SEDNLVYIW 267
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KL+K
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYK 312
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 224
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 677 V 677
V
Sbjct: 285 V 285
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 11/249 (4%)
Query: 544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK 603
T H V+ V+F PN LA++S DK +++W A + F + +GH I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAW-SS 78
Query: 604 KTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFD 660
++L +D ++ W ++ C KG + V F P+ +++ + D+ V I+D
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH 719
++T + +L H++ V+ + ++ +G + S S + L ++W ASG+C++ L + N
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 720 SCV-FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISALAQSPVTG--MVASA 774
S V F P+ +L ++L+LW+ ++ K + T H+N A VTG + S
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 775 SHDSSVKLW 783
S D+ V +W
Sbjct: 259 SEDNLVYIW 267
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V+ FS +G+ LASS D+ + +W + E T HK ++DV + +S+ L +AS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
DK++++WD ++ C + GHS+ + +F+P +++L D ++ W + C
Sbjct: 89 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
+ + V F R G L+ ++S D + I+D + + +L V+++ +
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
NG Y LA+ N +K+W + G+C++ + + N+ + C+F + V GG +S E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
+WN+ + + + H +++ + A P ++ASA+ +D ++KL+K
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ ++ V CC+F+ L+ S D V +W++ T + T H V+ V F + S
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
+ ++S D R+WD A+ + P+ + F P + DN ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDY 224
Query: 623 NPFLCTHITKGGTAQ-----VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAEL 676
+ C G + F G+ + + S D +V I++++T LQGH ++
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 677 V 677
V
Sbjct: 285 V 285
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
+TC F G + S D + +W+ T + T H V + R N + + S
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
D+++++W+A C GH+S + + H K+ D ++ W I C H
Sbjct: 178 DRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHEKRV---VSGSRDATLRVWDIETGQCLH 233
Query: 630 ITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY 688
+ G A VR G+ +++ A D +V ++D ET+ H+LQGH V + +D G +
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIH 291
Query: 689 LASVSQNL-VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747
+ S S + ++VW + +G CI L+ G+Q + + L+ S++++W++
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 748 KSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLW 783
+ + H++ ++ L + V ++S D +VKLW
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 25/216 (11%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
S V C H K + S D + +W+++T Q H + V V++ + ++ +
Sbjct: 200 STVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG 255
Query: 568 SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF---HPKKTDLFCFCDNDNEIQYWSINP 624
+ D V++WD C GH++ + SL F H L D I+ W +
Sbjct: 256 AYDFMVKVWDPETET-CLHTLQGHTNRVYSLQFDGIHVVSGSL------DTSIRVWDVET 308
Query: 625 FLCTHITKGG---TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG---HAELVN 678
C H G T+ + + I L++ +D V I+DI+T + +LQG H V
Sbjct: 309 GNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 679 YICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS 713
C N +++ + S + VK+W + +GE I+ L +
Sbjct: 367 --CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 20/301 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R V FS DG+ +AS G D+ + ++ +T + + H+ V F + S
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWS 621
+AT S DK V++WD+A Y HS + F K L ND ++ W
Sbjct: 678 YIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 622 INPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ------- 671
+N C + G T V RF P L + ++D + ++D+ + + S+
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 672 -----GHAELVNYIC-WDTNGDYLASVSQNLVKVWSMASGECIQEL-SSNGNQFHSCVFH 724
E++ C W +GD + ++N V ++ + + + E+ + + + C F
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 856
Query: 725 PSYSTLLVVGGISSLELWNM-AENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
P ++ +ELWN+ + K H + + + SP +AS D ++++W
Sbjct: 857 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Query: 784 K 784
+
Sbjct: 917 E 917
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 17/244 (6%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574
F++DGK L SS D + +WN T + H+ V D R +S +L + S D +V+
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1075
Query: 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG 634
+W+ + +T H ++S T F D + WS + H KG
Sbjct: 1076 VWNVITGRI-ERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLLSPLHELKGH 1133
Query: 635 TAQVRFQP--RIGQLLAAASDK-VVSIFDIETDRQTHSLQ---------GHAELVNYICW 682
VR G LLA D + I+++ + HS H V +C+
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1193
Query: 683 DTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW 742
+ L S L K W++A+G+ Q +NG P + T + V + L +
Sbjct: 1194 SPDSKTLVSAGGYL-KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1252
Query: 743 NMAE 746
+ E
Sbjct: 1253 QVLE 1256
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/258 (18%), Positives = 101/258 (39%), Gaps = 25/258 (9%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
++V+CC S + +A D + + + + S+ HK V ++F + L ++
Sbjct: 969 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1028
Query: 568 SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI----- 622
S D +++W+ ++ H + DF + D ++ W++
Sbjct: 1029 SEDSVIQVWNWQTGDYV--FLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRI 1084
Query: 623 -NPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F C +G + + ++DK I+ + H L+GH V
Sbjct: 1085 ERDFTC---HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA 1141
Query: 682 WDTNGDYLASVSQN-LVKVWSMASGECIQEL---------SSNGNQFHSCVFHPSYSTLL 731
+ +G LA+ N +++W+++ G+ + +++G F P TL+
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1201
Query: 732 VVGGISSLELWNMAENKS 749
GG L+ WN+A S
Sbjct: 1202 SAGGY--LKWWNVATGDS 1217
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---------LQTESTPEDHKSVVT 553
++ N V C FS DG LLA+ + ++ +WN+ + E H VT
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1189
Query: 554 DVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589
DV F P+S L +A ++ W+ A + YT
Sbjct: 1190 DVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1223
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 20/301 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R V FS DG+ +AS G D+ + ++ +T + + H+ V F + S
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWS 621
+AT S DK V++WD+A Y HS + F K L ND ++ W
Sbjct: 671 YIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 622 INPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ------- 671
+N C + G T V RF P L + ++D + ++D+ + + S+
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 672 -----GHAELVNYIC-WDTNGDYLASVSQNLVKVWSMASGECIQEL-SSNGNQFHSCVFH 724
E++ C W +GD + ++N V ++ + + + E+ + + + C F
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849
Query: 725 PSYSTLLVVGGISSLELWNM-AENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
P ++ +ELWN+ + K H + + + SP +AS D ++++W
Sbjct: 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Query: 784 K 784
+
Sbjct: 910 E 910
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 17/244 (6%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574
F++DGK L SS D + +WN T + H+ V D R +S +L + S D +V+
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068
Query: 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG 634
+W+ + +T H ++S T F D + WS + H KG
Sbjct: 1069 VWNVITGRI-ERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 635 TAQVRFQP--RIGQLLAAASDK-VVSIFDIETDRQTHSLQ---------GHAELVNYICW 682
VR G LLA D + I+++ + HS H V +C+
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 683 DTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW 742
+ L S L K W++A+G+ Q +NG P + T + V + L +
Sbjct: 1187 SPDSKTLVSAGGYL-KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245
Query: 743 NMAE 746
+ E
Sbjct: 1246 QVLE 1249
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/258 (18%), Positives = 101/258 (39%), Gaps = 25/258 (9%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
++V+CC S + +A D + + + + S+ HK V ++F + L ++
Sbjct: 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021
Query: 568 SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI----- 622
S D +++W+ ++ H + DF + D ++ W++
Sbjct: 1022 SEDSVIQVWNWQTGDYV--FLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077
Query: 623 -NPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F C +G + + ++DK I+ + H L+GH V
Sbjct: 1078 ERDFTC---HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA 1134
Query: 682 WDTNGDYLASVSQN-LVKVWSMASGECIQEL---------SSNGNQFHSCVFHPSYSTLL 731
+ +G LA+ N +++W+++ G+ + +++G F P TL+
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194
Query: 732 VVGGISSLELWNMAENKS 749
GG L+ WN+A S
Sbjct: 1195 SAGGY--LKWWNVATGDS 1210
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---------LQTESTPEDHKSVVT 553
++ N V C FS DG LLA+ + ++ +WN+ + E H VT
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 554 DVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589
DV F P+S L +A ++ W+ A + YT
Sbjct: 1183 DVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1216
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 39/277 (14%)
Query: 519 GKLLASSGHDRKVVLWNM--DTLQTEST-PEDHKSVVTDVRFRPNSSQLATASVDKSVRL 575
G LLAS G DR++ +W D+ +S E H+ V V + P + LA+AS D + +
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 576 WDAANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPFLCTHIT 631
W +F C GH + + S+ + P +L C D + W + + + C +
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 632 KGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQT--HSLQGHAELVNYICWDTNG 686
T V+ + P L +A+ D V ++ E D +L+GH V + +D +G
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 687 DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745
LAS S + V++W Q L N PS+ + + G
Sbjct: 207 QRLASCSDDRTVRIWR-------QYLPGNEQGVACSGSDPSWKCICTLSGF--------- 250
Query: 746 ENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782
H I +A +TG +A+A D ++++
Sbjct: 251 ---------HSRTIYDIAWCQLTGALATACGDDAIRV 278
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 598 LDFHPKKTDLFCFCDNDNEIQYWSI--NPFLCTHITKGG----TAQVRFQPRIGQLLAAA 651
L ++P T L C D I+ W + ++C + G +V + P L +A+
Sbjct: 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 652 SDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGDYLASVSQNL-VKVWSMASG--- 705
D I+ D +L+GH V + W +G+ LA+ S++ V VW +
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM---TIAAHENIISAL 762
EC+ L+S+ V+HPS L +++L+ E+ + T+ HE+ + +L
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200
Query: 763 AQSPVTGMVASASHDSSVKLWK 784
A P +AS S D +V++W+
Sbjct: 201 AFDPSGQRLASCSDDRTVRIWR 222
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 515 FSSDGKLLASSGHDRKVVLW------NMDTLQTESTPEDHKSVVT----------DVRFR 558
F G+ LAS DR V +W N + + K + T D+ +
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 559 PNSSQLATASVDKSVRLW------DAANPNFCSQAY--TGHSSPIMSLDFHPKKTDLFCF 610
+ LATA D ++R++ D P F A+ HS + + ++PK+ L
Sbjct: 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 611 CDNDNEIQYW 620
C +D E+ +W
Sbjct: 322 CSDDGEVAFW 331
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 16/216 (7%)
Query: 546 EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605
E H + V+DV N + +AS D S+RLW+ N C + GH+ ++S+ F P
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ-CQYKFLGHTKDVLSVAFSPDNR 122
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHITKGG----TAQVRFQPRIGQ--LLAAASDKVVSIF 659
+ DN ++ W++ +++G + VRF P + +++ D +V ++
Sbjct: 123 QIVSG-GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQF 718
D+ T R L+GH V + +G AS ++ + ++W + GE + E+++ G
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPI 240
Query: 719 HSCVFHPSYSTLLVV--GGISSLELWNMAENKSMTI 752
+ F P+ + GI +L ENK + +
Sbjct: 241 NQICFSPNRYWMCAATEKGIRIFDL----ENKDIIV 272
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGE 706
++A+ D + +++++ + + GH + V + + + + S + N ++VW++ GE
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGE 141
Query: 707 CIQELSSNGN-QFHSCV-FHPSY-STLLVVGGISSL-ELWNMAENKSMT-IAAHENIISA 761
C+ LS + + SCV F PS + ++V GG +L ++W++A + +T + H N +++
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 762 LAQSPVTGMVASASHDSSVKLW 783
+ SP + AS+ D +LW
Sbjct: 202 VTVSPDGSLCASSDKDGVARLW 223
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV-VTDVRFRPNS 561
++ + VT S DG L ASS D LW D + E+ E + + F PN
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKGEALSEMAAGAPINQICFSPNR 249
Query: 562 SQLATASVDKSVRLWDAANPNF 583
+ A+ +K +R++D N +
Sbjct: 250 YWMCAAT-EKGIRIFDLENKDI 270
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C + D +++ + D V +W+++T + +T H V +RF N+ + T S
Sbjct: 176 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSK 231
Query: 570 DKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
D+S+ +WD A+P + + GH + + +DF K D I+ W N C
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVW--NTSTC 286
Query: 628 THIT-----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW 682
+ K G A ++++ R+ +++ +SD + ++DIE L+GH ELV I +
Sbjct: 287 EFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344
Query: 683 DTNGDYLASVSQNLVKVWSMASG 705
D N ++ +KVW + +
Sbjct: 345 D-NKRIVSGAYDGKIKVWDLVAA 366
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 40/301 (13%)
Query: 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ 563
RS SK C D + + S D + +W+ +TL+ + H V +++ +
Sbjct: 129 RSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV 185
Query: 564 LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW--- 620
+ T S D +VR+WD N H ++ L F+ + C D I W
Sbjct: 186 IITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMA 241
Query: 621 -----SINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675
++ L H + V F + +++A+ D+ + +++ T +L GH
Sbjct: 242 SPTDITLRRVLVGH--RAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297
Query: 676 LVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
+ C + S S N +++W + G C++ L + + C+ + +V
Sbjct: 298 GIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCI---RFDNKRIVS 351
Query: 735 GI--SSLELWNMAENKS----------MTIAAHENIISALAQSPVTGMVASASHDSSVKL 782
G +++W++ T+ H + L + S+SHD ++ +
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 409
Query: 783 W 783
W
Sbjct: 410 W 410
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577
D K + S+ DR + +WN T + T HK + +++R + + S D ++RLWD
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD 322
Query: 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW----SINP-----FLCT 628
C + GH + + F K+ + D +I+ W +++P LC
Sbjct: 323 -IECGACLRVLEGHEELVRCIRFDNKRIVSGAY---DGKIKVWDLVAALDPRAPAGTLCL 378
Query: 629 HITKGGTAQV-RFQPRIGQLLAAASDKVVSIFDIETD 664
+ +V R Q Q+++++ D + I+D D
Sbjct: 379 RTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 134/328 (40%), Gaps = 57/328 (17%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNM-------------------DTLQTESTPEDH 548
S V C FS+DG+ LA+ G ++ ++ + + L T S+P
Sbjct: 65 SVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF 608
+ + V F P+ LAT + D+ +R+WD N GH I SLD+ P D
Sbjct: 124 LYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSG-DKL 180
Query: 609 CFCDNDNEIQYWSINPFLC--THITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIET-- 663
D ++ W + C T + G V P G+ +AA S D+ V ++D ET
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 664 -----DRQTHSLQGHAELVNYICWDTNGDYLASVSQNL-VKVWSMA------------SG 705
D + S GH + V + + +G + S S + VK+W++ SG
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS--LELWNMAE-NKSMTIAAHENIISAL 762
C E++ G++ + + ++ G + W+ N + + H N + ++
Sbjct: 301 TC--EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Query: 763 AQS------PVTGMVASASHDSSVKLWK 784
A + P + A+ S D ++WK
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 112/277 (40%), Gaps = 41/277 (14%)
Query: 547 DHKSVVTDVRFRPNSSQLATAS---------VDKSV--RLWDAANPNFCSQAYTGHSSP- 594
DH SVV V+F + LAT D S+ RL D + N + SSP
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 595 ----IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQL 647
I S+ F P L + D I+ W I I +G + + P +L
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAE-DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGE 706
++ + D+ V I+D+ T + + +L + +G Y+A+ S V+VW +G
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 707 CIQELSSNG-------NQFHSCVFHPSYSTLLVVGGISSLELWNM--AENKS-------- 749
++ L S + +S VF +++ S++LWN+ A NKS
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 750 ---MTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+T H++ + ++A + + S S D V W
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 20/301 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R V FS DG+ +AS G D+ + ++ +T + + H+ V F +
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWS 621
+AT SVDK V++W++ Y HS + F L +D ++ W
Sbjct: 677 FIATCSVDKKVKIWNSMTGELV-HTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 622 INPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSL-------- 670
+N C + G T V RF P L + ++D + ++D + + S+
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 795
Query: 671 ----QGHAELVNYIC-WDTNGDYLASVSQNLVKVWSMASGECIQEL-SSNGNQFHSCVFH 724
Q E++ C W +G + ++N + ++ + + + E+ + + + C F
Sbjct: 796 LEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 725 PSYSTLLVVGGISSLELWNM-AENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
P +V +ELWN + +K H + + + SP ++S D +++LW
Sbjct: 856 PQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Query: 784 K 784
+
Sbjct: 916 E 916
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 16/243 (6%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574
F++D K L SS D ++ +WN L H+ V D R NS +L + S D +V+
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQ-LDKCIFLRGHQETVKDFRLLKNS-RLLSWSFDGTVK 1074
Query: 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG 634
+W+ N + + H ++S D T F D + WS + L H +G
Sbjct: 1075 VWNIITGNK-EKDFVCHQGTVLSCDISHDATK-FSSTSADKTAKIWSFDLLLPLHELRGH 1132
Query: 635 TAQVRFQPRI--GQLLAAASDK-VVSIFDIETDRQTH-----SLQG---HAELVNYICWD 683
VR LLA D + I+++ H S +G H V +C+
Sbjct: 1133 NGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 684 TNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743
+G L S +K W++ +GE Q +NG P + T + V + L +
Sbjct: 1193 PDGKMLISAG-GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQ 1251
Query: 744 MAE 746
E
Sbjct: 1252 TLE 1254
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 114/295 (38%), Gaps = 40/295 (13%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
+S + C FS L + V LWN D+ + H S V V F P+ S T
Sbjct: 846 HSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLT 905
Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
+S D+++RLW+ +S +M ++ D+ +NE+ +++
Sbjct: 906 SSDDQTIRLWETKK--------VCKNSAVML----KQEVDVVF---QENEVMVLAVDHIR 950
Query: 627 CTHITKGGTAQVRF-----------QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675
+ G T Q+ + P + + + + I ++ +R S H +
Sbjct: 951 RLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKK 1010
Query: 676 LVNYICWDTNGDYLASVSQNL-VKVWSMASGECI-----QELSSNGNQFHSCVFHPSYST 729
V +I + + L S S + ++VW+ +CI QE + + S
Sbjct: 1011 TVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKN-------SR 1063
Query: 730 LLVVGGISSLELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
LL ++++WN+ NK H+ + + S +S S D + K+W
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C S D +S+ D+ +W+ D L H V F +S+ LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 570 DKSVRLWDAAN 580
+ +R+W+ +N
Sbjct: 1154 NGEIRIWNVSN 1164
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--------TESTPEDHKSVVTD 554
+R N V C FS D LLA+ + ++ +WN+ + +E H VTD
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589
+ F P+ L +A ++ W+ YT
Sbjct: 1189 LCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYT 1221
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
G + N VT S+ LL S+ D+ ++ W + Q P + H +V D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
+ + +AS DK++RLWD A Q + GH S +MS+D KK + D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIG------QLLAAASDKVVSIFDIETDR 665
I+ W+I C G +QVR P +++A +DK+V +++ +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
GH +N + +G +AS ++ + +W++A+ + + LS+ F S F
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
P
Sbjct: 247 P 247
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C ++DG S+ D+ + LW++ T +T HKS V V +S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTD----LFCFCDNDNEIQYWSINP 624
DK++++W C GH+ + + P +K D ND ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 625 FLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F G + + P + +A D + ++++ + ++L E+ + +
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LA 244
Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+ N +LA+ + +KV+S+ + +L
Sbjct: 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
L+A+ DK + ++D+ T GH V + D + S S++ +KVW++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
C+ L + + P+ T++ G ++ WN+ + + H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
+ L SP ++ASA D + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLW 223
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
NS + S DG L+AS+G D +++LWN+ + T V + + F PN LA
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAA 254
Query: 567 A--------SVDKSVRLWDAANPNFCSQAYTGHSSP-IMSLDFHPKKTDLFCFCDNDNEI 617
A S+D + D P F Y+ + P +SL + LF DN I
Sbjct: 255 ATATGIKVFSLDPQYLV-DDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGY-TDNVI 310
Query: 618 QYWSI 622
+ W +
Sbjct: 311 RVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
G + N VT S+ LL S+ D+ ++ W + Q P + H +V D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
+ + +AS DK++RLWD A Q + GH S +MS+D KK + D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQ------LLAAASDKVVSIFDIETDR 665
I+ W+I C G +QVR P +++A +DK+V +++ +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
GH +N + +G +AS ++ + +W++A+ + + LS+ F S F
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
P
Sbjct: 247 P 247
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C ++DG S+ D+ + LW++ T +T HKS V V +S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTD----LFCFCDNDNEIQYWSINP 624
DK++++W C GH+ + + P +K D ND ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 625 FLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F G + + P + +A D + ++++ + ++L E+ + +
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LA 244
Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+ N +LA+ + +KV+S+ + +L
Sbjct: 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
L+A+ DK + ++D+ T GH V + D + S S++ +KVW++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
C+ L + + P+ T++ G ++ WN+ + + H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
+ L SP ++ASA D + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLW 223
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
NS + S DG L+AS+G D +++LWN+ + T V + + F PN LA
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAA 254
Query: 567 A--------SVDKSVRLWDAANPNFCSQAYTGHSSP-IMSLDFHPKKTDLFCFCDNDNEI 617
A S+D + D P F Y+ + P +SL + LF DN I
Sbjct: 255 ATATGIKVFSLDPQYLV-DDLRPEFA--GYSAAAEPHAVSLAWSADGQTLFAGY-TDNVI 310
Query: 618 QYWSI 622
+ W +
Sbjct: 311 RVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
G + N VT S+ LL S+ D+ ++ W + Q P + H +V D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
+ + +AS DK++RLWD A Q + GH S +MS+D KK + D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQ------LLAAASDKVVSIFDIETDR 665
I+ W+I C G +QVR P +++A +DK+V +++ +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
GH +N + +G +AS ++ + +W++A+ + + LS+ F S F
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
P
Sbjct: 247 P 247
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C ++DG S+ D+ + LW++ T +T HKS V V +S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTD----LFCFCDNDNEIQYWSINP 624
DK++++W C GH+ + + P +K D ND ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 625 FLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F G + + P + +A D + ++++ + ++L E+ + +
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LA 244
Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+ N +LA+ + +KV+S+ + +L
Sbjct: 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
L+A+ DK + ++D+ T GH V + D + S S++ +KVW++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
C+ L + + P+ T++ G ++ WN+ + + H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
+ L SP ++ASA D + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLW 223
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
NS + S DG L+AS+G D +++LWN+ + T V + + F PN LA
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAA 254
Query: 567 A--------SVDKSVRLWDAANPNFCSQAYTGHSSP-IMSLDFHPKKTDLFCFCDNDNEI 617
A S+D + D P F Y+ + P +SL + LF DN I
Sbjct: 255 ATATGIKVFSLDPQYLV-DDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGY-TDNVI 310
Query: 618 QYW 620
+ W
Sbjct: 311 RVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
G + N VT S+ LL S+ D+ ++ W + Q P + H +V D
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
+ + +AS DK++RLWD A Q + GH S +MS+D KK + D
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 122
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIG------QLLAAASDKVVSIFDIETDR 665
I+ W+I C G +QVR P +++A +DK+V +++ +
Sbjct: 123 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
GH +N + +G +AS ++ + +W++A+ + + LS+ F S F
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 240
Query: 725 P 725
P
Sbjct: 241 P 241
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C ++DG S+ D+ + LW++ T +T HKS V V +S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTD----LFCFCDNDNEIQYWSINP 624
DK++++W C GH+ + + P +K D ND ++ W++N
Sbjct: 122 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 625 FLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F G + + P + +A D + ++++ + ++L E+ + +
Sbjct: 180 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LA 238
Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+ N +LA+ + +KV+S+ + +L
Sbjct: 239 FSPNRYWLAAATATGIKVFSLDPQYLVDDL 268
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
L+A+ DK + ++D+ T GH V + D + S S++ +KVW++ G+
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 133
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
C+ L + + P+ T++ G ++ WN+ + + H + I
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 193
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
+ L SP ++ASA D + LW
Sbjct: 194 NTLTASPDGTLIASAGKDGEIMLW 217
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
NS + S DG L+AS+G D +++LWN+ + T V + + F PN LA
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAA 248
Query: 567 A--------SVDKSVRLWDAANPNFCSQAYTGHSSP-IMSLDFHPKKTDLFCFCDNDNEI 617
A S+D + D P F Y+ + P +SL + LF DN I
Sbjct: 249 ATATGIKVFSLDPQYLV-DDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGY-TDNVI 304
Query: 618 QYWSI 622
+ W +
Sbjct: 305 RVWQV 309
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
G + N VT S+ LL S+ D+ ++ W + Q P + H +V D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
+ + +AS DK++RLWD A Q + GH S +MS+D KK + D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIG------QLLAAASDKVVSIFDIETDR 665
I+ W+I C G +QVR P +++A +DK+V +++ +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
GH +N + +G +AS ++ + +W++A+ + + LS+ F S F
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
P
Sbjct: 247 P 247
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C ++DG S+ D+ + LW++ T +T HKS V V +S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTD----LFCFCDNDNEIQYWSINP 624
DK++++W C GH+ + + P +K D ND ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 625 FLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F G + + P + +A D + ++++ + ++L E+ + +
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LA 244
Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+ N +LA+ + +KV+S+ + +L
Sbjct: 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
L+A+ DK + ++D+ T GH V + D + S S++ +KVW++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
C+ L + + P+ T++ G ++ WN+ + + H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
+ L SP ++ASA D + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLW 223
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
NS + S DG L+AS+G D +++LWN+ + T V + + F PN LA
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLAA 254
Query: 567 A--------SVDKSVRLWDAANPNFCSQAYTGHSSP-IMSLDFHPKKTDLFCFCDNDNEI 617
A S+D + D P F Y+ + P +SL + LF DN I
Sbjct: 255 ATATGIKVFSLDPQYLV-DDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGY-TDNVI 310
Query: 618 QYWSI 622
+ W +
Sbjct: 311 RVWQV 315
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 101/238 (42%), Gaps = 7/238 (2%)
Query: 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDV 555
T EV I+ + V F + + D ++ ++N +T + E H + +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 556 RFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN 615
P + + S D +V+LW+ N Q + GH +M + F+PK F D
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 616 EIQYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHS 669
++ WS+ F T + G V + P + ++ A+ D + I+D +T +
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 670 LQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
L+GH V++ + + S S++ +K+W+ ++ + + L+ + HP+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 7/236 (2%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
EV I+ + V F + + D ++ ++N +T + E H + +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
P + + S D +V+LW+ N Q + GH +M + F+PK F D +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 618 QYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHSLQ 671
+ WS+ F T + G V + P + ++ A+ D + I+D +T +L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
GH V++ + + S S++ +K+W+ ++ + + L+ + HP+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 5/213 (2%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R + V+ SSDG+ S D + LW++ T T H V V F ++
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDNDNEIQYWS 621
Q+ + S DK+++LW+ + HS + + F P ++ + C D ++ W+
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 622 I-NPFLCT-HITKGGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVN 678
+ N L T HI G G L A+ D ++D+ + ++L G +++N
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIIN 260
Query: 679 YICWDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+C+ N +L + + +K+W + + EL
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 5/213 (2%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R + V+ SSDG+ S D + LW++ T T H V V F ++
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDNDNEIQYWS 621
Q+ + S DK+++LW+ + HS + + F P ++ + C D ++ W+
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 622 I-NPFLCT-HITKGGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVN 678
+ N L T HI G G L A+ D ++D+ + ++L G +++N
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIIN 237
Query: 679 YICWDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+C+ N +L + + +K+W + + EL
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 7/236 (2%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
EV I+ + V F + + D ++ ++N +T + E H + +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
P + + S D +V+LW+ N Q + GH +M + F+PK F D +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 618 QYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHSLQ 671
+ WS+ F T + G V + P + ++ A+ D + I+D +T +L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
GH V++ + + S S++ +K+W+ ++ + + L+ + HP+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 7/236 (2%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
EV I+ + V F + + D ++ ++N +T + E H + +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
P + + S D +V+LW+ N Q + GH +M + F+PK F D +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 618 QYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHSLQ 671
+ WS+ F T + G V + P + ++ A+ D + I+D +T +L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
GH V++ + + S S++ +K+W+ ++ + + L+ + HP+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 47/207 (22%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTDVRFRPNSSQ--L 564
V FS D + + S+ DR + LWN E H+ V+ VRF PN+ Q +
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP 624
+AS DK+V++W+ +N S GH+ + ++ P +
Sbjct: 535 VSASWDKTVKVWNLSNCKLRS-TLAGHTGYVSTVAVSPDGS------------------- 574
Query: 625 FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDT 684
LC + D VV ++D+ ++ +SL+ ++ +++ +C+
Sbjct: 575 -LCA--------------------SGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSP 612
Query: 685 NGDYLASVSQNLVKVWSMASGECIQEL 711
N +L + +++ +K+W + S +++L
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDL 639
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 58/297 (19%)
Query: 501 GCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTLQ-----TESTPEDHKSVVTD 554
G +R+ VT D ++ S+ D+ ++LW + + H V D
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
V + + S D +RLWD A ++ + GH+ ++S+ F + D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDNRQIVS-ASRD 493
Query: 615 NEIQYWSINPFLCTHITKGGTAQ------VRFQPRIGQ--LLAAASDKVVSIFDIETDRQ 666
I+ W+ I++GG VRF P Q +++A+ DK V
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV---------- 543
Query: 667 THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
KVW++++ + L+ + + P
Sbjct: 544 -------------------------------KVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 727 YSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
S G + LW++AE K + ++I AL SP + +A+ + +K+W
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIW 628
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
G + N VT S+ LL S+ D+ ++ W + Q P + H +V D
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
+ + +AS DK++RLWD A Q + GH S + S+D K + + D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVXSVDIDKKASXIIS-GSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQ------LLAAASDKVVSIFDIETDR 665
I+ W+I C G +QVR P +++A +DK V +++ +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
GH +N + +G +AS ++ + +W++A+ + LS+ F S F
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF-SLAFS 246
Query: 725 P 725
P
Sbjct: 247 P 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
V C ++DG S+ D+ + LW++ T +T HKS V V +S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTD----LFCFCDNDNEIQYWSINP 624
DK++++W C GH+ + + P +K D ND ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 625 FLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
F G + + P + +A D + ++++ + ++L E+ + +
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LA 244
Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQEL 711
+ N +LA+ + +KV+S+ + +L
Sbjct: 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDL 274
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
L+A+ DK + ++D+ T GH V + D + S S++ +KVW++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
C+ L + + P+ T++ G ++ WN+ + + H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
+ L SP ++ASA D + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIXLW 223
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
NS + S DG L+AS+G D ++ LWN+ + T V + + F PN LA
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LAFSPNRYWLAA 254
Query: 567 A--------SVDKSVRLWDAANPNFCSQAYTGHSSP-IMSLDFHPKKTDLFCFCDNDNEI 617
A S+D + D P F Y+ + P +SL + LF DN I
Sbjct: 255 ATATGIKVFSLDPQYLV-DDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGY-TDNVI 310
Query: 618 QYWSI 622
+ W +
Sbjct: 311 RVWQV 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+ +R + +S DGK LAS D + ++++ T + T E H + + F P+S
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
L TAS D ++++D + N +GH+S ++++ F P T F +D ++ W +
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAG-TLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDV 277
Query: 623 NPFLCTHITKGGTAQ---VRFQPRIGQLLAAASDKVVSIFD 660
C H Q V++ ++++ D+ + I+D
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 20/207 (9%)
Query: 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS---- 585
KV W + L + + E H+ V V A++S+D +RLWD N
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA 120
Query: 586 ---QAYTGHSSP---IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVR 639
A+T SP ++ H K ++F E + F+ + +
Sbjct: 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS---------IA 171
Query: 640 FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVK 698
+ P L + A D +++IFDI T + H+L+GHA + + + + L + S + +K
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231
Query: 699 VWSMASGECIQELSSNGNQFHSCVFHP 725
++ + LS + + + F P
Sbjct: 232 IYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 7/215 (3%)
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
+ NS + T S+D V++W + Q + GH ++S+D + D
Sbjct: 45 KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI-SHTLPIAASSSLDAH 103
Query: 617 IQYWSI-NPFLCTHITKG--GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
I+ W + N I G + F P L V+IF +E+ ++ +SL
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 674 AELVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV 732
+ + I + +G YLAS ++ ++ +A+G+ + L + S F P L+
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 733 VGGISSLELWNMAE-NKSMTIAAHENIISALAQSP 766
++++++ N + T++ H + + +A P
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 48/233 (20%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574
FS D + LA+ H KV ++ +++ + E + + + + + P+ LA+ ++D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG 634
++D A GH+ PI SL F P
Sbjct: 190 IFDIATGKLL-HTLEGHAMPIRSLTFSPDS------------------------------ 218
Query: 635 TAQVRFQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHAELVNYICW---DTNGDYLA 690
QLL ASD + I+D++ +L GHA V + + DT+ +++
Sbjct: 219 -----------QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH--FVS 265
Query: 691 SVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743
S S VKVW + + C+ + +Q ++ + S ++ VG + +++
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 488 QKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE----S 543
++ + F + I ++V +S+DG LA+ D+ V +W D E S
Sbjct: 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147
Query: 544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHP 602
++H V V + P+ + LA++S D +VR+W + ++ C GH + S DF
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF-D 206
Query: 603 KKTDLFCFC--DNDNEIQYW 620
K +F C +D+ ++ W
Sbjct: 207 KTEGVFRLCSGSDDSTVRVW 226
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)
Query: 632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIE--TDRQTHS-----LQGHAELVNYICWDT 684
K V ++P L A + D VSI+ E DR ++GH V + W
Sbjct: 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 685 NGDYLASVSQNL-VKVW----SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL 739
+G YLA+ S++ V +W S ECI L + ++HPS + L ++
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177
Query: 740 ELWNMAENKSMTIAA---HENIISALAQSPVTGM--VASASHDSSVKLWK 784
+W ++ +A HE + + G+ + S S DS+V++WK
Sbjct: 178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 521 LLASSGHDRKVVL----WNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576
+LA+ DRK+ L ++ TL HK + V +RP++S LA S D +V +W
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 577 ---DAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN----PFL 626
++A+ F GH + + + + L C D + W + +
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL-ATCSRDKSVWIWETDESGEEYE 144
Query: 627 CTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIF-DIETDRQTHS-LQGH 673
C + + + V+ + P L +++ D V I+ D + D + + L GH
Sbjct: 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH 196
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 754 AHENIISALAQSPVTGMVASASHDSSVKLW 783
AH+ I ++A P T ++A+ S DS+V +W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 107/230 (46%), Gaps = 47/230 (20%)
Query: 518 DGKLLASSGHDRKVVLWNMDTLQTEST-------------PEDHKSVVTDVRFRPNSSQL 564
+G+ + S G D +VL++++ +S P+ H+ V V++ P+ + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 565 AT-ASVDKSVRLWD------AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
T +S DK++++WD A NF Y+ H SP+ + K L ++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAVGTRGPKV 168
Query: 618 QYWSINPFLCTHITKGGTAQ---VRFQPRIGQLLAAAS-DKVVSIFDIE----------- 662
Q + C+HI +G + V + PR +LA AS D V ++D+
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 663 -TDRQTHSLQ----GHAELVNYICWDTNGDYLASV-SQNLVKVWSMASGE 706
+++ +++ H VN +C+ ++G +L +V + N +++W+ ++GE
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 32/245 (13%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ---LATASVDK 571
+ D + SS D+ + +W+ +TLQT ++V + P S++ +A +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH-HMSPVSTKHCLVAVGTRGP 166
Query: 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT 631
V+L D + + CS GH I+++ + P+ + D+ ++ W + IT
Sbjct: 167 KVQLCDLKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225
Query: 632 -------KGGTAQVRFQPRIGQL--LAAASDKVVSIFDIETD---RQTHSLQGHAELVNY 679
K + G++ L SD + + + TD R +S G LVNY
Sbjct: 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNY 284
Query: 680 --ICWDTNGDYLASVS------------QNLVKVWSMASGECIQELSSNGNQFHSCVFHP 725
+C ++ +VS + + V+++ SGE I L + CVF
Sbjct: 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344
Query: 726 SYSTL 730
++ L
Sbjct: 345 NFQEL 349
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%)
Query: 521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVDKSVRLWDAA 579
L+A KV L ++ + + H+ + V + P LATAS D V+LWD
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 580 NPNFCSQAYTGH----SSPIMSLDF-HPKKTDLFCFCDN---------DNEIQYWSINPF 625
+ C H S + S + H K + CF + DN ++ W+ +
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 626 LCTHITKGGTAQ-----VRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHAELV 677
T + G ++F G + + ++++ + + Q L+GH + V
Sbjct: 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV 337
Query: 678 NYICWDTNGDYLASVSQN 695
+ + +N L S S++
Sbjct: 338 DCCVFQSNFQELYSGSRD 355
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 112/264 (42%), Gaps = 39/264 (14%)
Query: 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609
SV+T ++F N + T + DK +R++D+ N F Q +GH + +L + +
Sbjct: 123 SVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKY--AHGGILV 177
Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQVRF-----QPRIGQLLAAASDKVVSIFDI--E 662
D ++ W I CTH+ +G + VR I ++ + D + ++ + E
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 663 TDRQTHS---------------------LQGHAELVNYICWDTNGDYLASVS-QNLVKVW 700
+ H L+GH V + +G+ + S S N + VW
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVW 295
Query: 701 SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENII 759
+A +C+ LS + ++ +S ++ + +++ +W++ + M T+ H ++
Sbjct: 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
L S + SA+ D S++ W
Sbjct: 356 GLLRLSD--KFLVSAAADGSIRGW 377
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 32/187 (17%)
Query: 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV--TDVRFRPNSSQLATASVDKSVRLW 576
G +L S DR V +W++ E H S V D+ N + T S D ++ +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 577 D-----------------------AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN 613
NP F GH + + ++ H ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG-VLRGHMASVRTVSGHG---NIVVSGSY 288
Query: 614 DNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670
DN + W + C +I G T ++ + + ++A+ D + I+D+E ++L
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 671 QGHAELV 677
QGH LV
Sbjct: 349 QGHTALV 355
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 23/197 (11%)
Query: 478 YGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD 537
Y + H+PE VG +R + V S G ++ S +D +++W++
Sbjct: 249 YPLVFHTPEENPYF--------VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA 298
Query: 538 TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT--GHSSPI 595
++ H + + + +AS+D ++R+WD N YT GH++ +
Sbjct: 299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL---MYTLQGHTALV 355
Query: 596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPF---LCTHITKGGTAQVRFQPRIGQLLAAAS 652
L K D I+ W N + H T + +L + S
Sbjct: 356 GLLRLSDK---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS--DNILVSGS 410
Query: 653 DKVVSIFDIETDRQTHS 669
+ +I+++ + + H+
Sbjct: 411 ENQFNIYNLRSGKLVHA 427
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/292 (18%), Positives = 114/292 (39%), Gaps = 51/292 (17%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
++ +KV C + D + + SS D KV++W+ T E + V + P+
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 563 QLATASVDKSVRLWDAA---NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQY 619
+A +D ++ N N ++ S+ H F ++D
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKK--------KSVAMHTNYLSACSFTNSDM---- 167
Query: 620 WSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNY 679
Q+L A+ D +++D+E+ + S GH +
Sbjct: 168 --------------------------QILTASGDGTCALWDVESGQLLQSFHGHG--ADV 199
Query: 680 ICWD-----TNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
+C D T +++ VW M SG+C+Q ++ + +S ++PS
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 735 GISSLELWNMAENKSMTIAAHENII---SALAQSPVTGMVASASHDSSVKLW 783
++ L+++ ++ + I + E+II S++ S ++ + +D ++ +W
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R +K+ H+ +D +LL S+ D K+++W+ T S V + P+ +
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
+A +D +++ N + +TG+ S LD + T D
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 176
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
W I T G T V P ++ A D ++D+ + GH
Sbjct: 177 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 236
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
+N IC+ NG+ A+ S + +++ + + + + S + S F S L
Sbjct: 237 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
L + +W+ + +++ +A H+N +S L + VA+ S DS +K+W
Sbjct: 297 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF 723
R +L+GH + + W T+ L S SQ+ + +W + + + + +C +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 724 HPSYSTLLVVGGISSL-ELWNMAENK-----SMTIAAHENIISALAQSPVTGMVASASHD 777
PS + GG+ ++ ++N+ + S +A H +S + + ++S D
Sbjct: 117 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 174
Query: 778 SSVKLW 783
++ LW
Sbjct: 175 TTCALW 180
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R +K+ H+ +D +LL S+ D K+++W+ T S V + P+ +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
+A +D +++ N + +TG+ S LD + T D
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
W I T G T V P ++ A D ++D+ + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
+N IC+ NG+ A+ S + +++ + + + + S + S F S L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
L + +W+ + +++ +A H+N +S L + VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF 723
R +L+GH + + W T+ L S SQ+ + +W + + + + +C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 724 HPSYSTLLVVGGISSL-ELWNMAENK-----SMTIAAHENIISALAQSPVTGMVASASHD 777
PS + GG+ ++ ++N+ + S +A H +S + + ++S D
Sbjct: 106 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 778 SSVKLW 783
++ LW
Sbjct: 164 TTCALW 169
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R +K+ H+ +D +LL S+ D K+++W+ T S V + P+ +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
+A +D +++ N + +TG+ S LD + T D
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
W I T G T V P ++ A D ++D+ + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
+N IC+ NG+ A+ S + +++ + + + + S + S F S L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
L + +W+ + +++ +A H+N +S L + VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF 723
R +L+GH + + W T+ L S SQ+ + +W + + + + +C +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 724 HPSYSTLLVVGGISSL-ELWNMAENK-----SMTIAAHENIISALAQSPVTGMVASASHD 777
PS + GG+ ++ ++N+ + S +A H +S + + ++S D
Sbjct: 106 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGD 163
Query: 778 SSVKLW 783
++ LW
Sbjct: 164 TTCALW 169
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R +K+ H+ +D +LL S+ D K+++W+ T S V + P+ +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
+A +D +++ N + +TG+ S LD + T D
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
W I T G T V P ++ A D ++D+ + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
+N IC+ NG+ A+ S + +++ + + + + S + S F S L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
L + +W+ + +++ +A H+N +S L + VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
+R +K+ H+ +D +LL S+ D K+++W+ T S V + P+ +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
+A +D +++ N + +TG+ S LD + T D
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
W I T G T V P ++ A D ++D+ + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
+N IC+ NG+ A+ S + +++ + + + + S + S F S L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
L + +W+ + +++ +A H+N +S L + VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 517 SDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
S G +LA + D V LW+ + LQ E E ++ V + + LA +
Sbjct: 125 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSS 179
Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
V+LWD + T HS+ + SL ++ + + I + +
Sbjct: 180 AEVQLWDVQQQKRL-RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVA 235
Query: 631 TKGGTAQ----VRFQPRIGQLLAAASDKVVSIFD----------IETDRQTHSLQGHAEL 676
T G +Q +R+ P L + +D +V+++ ++T Q QG +
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---QGAVKA 292
Query: 677 VNYICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
V + W +N LA+ S +++W++ SG C+ + ++ +Q S ++ P Y L+
Sbjct: 293 VAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 349
Query: 734 GGISS--LELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
G + L +W K + H + + +L SP VASA+ D +++LW+
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 17/250 (6%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
++ + +G LA +V LW++ + H + V + + NS L++ S
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 218
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
+ D +GHS + L + P L NDN + W P
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGW 277
Query: 630 IT-------KGGTAQVRFQPRIGQLLAAA---SDKVVSIFDIETDRQTHSLQGHAELVNY 679
+ +G V + P +LA SD+ + I+++ + ++ H+++ +
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS- 336
Query: 680 ICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736
I W + L S +QN + +W + + EL + ++ S P +T+
Sbjct: 337 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 396
Query: 737 SSLELWNMAE 746
+L LW E
Sbjct: 397 ETLRLWRCFE 406
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
Query: 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDV 555
V + + +V ++ DG+ LAS G+D V +W + P H+ V V
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 556 RFRP-NSSQLAT--ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC--- 609
+ P S+ LAT + D+ +R+W+ + C A HS + S+ + P +L
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISGHG 351
Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSI---FDIET 663
F N++ W KG T++V P + +AA+D+ + + F+++
Sbjct: 352 FA--QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 409
Query: 664 DRQ 666
R+
Sbjct: 410 ARR 412
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 517 SDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
S G +LA + D V LW+ + LQ E E ++ V + + LA +
Sbjct: 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSS 168
Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
V+LWD + T HS+ + SL ++ + + I + +
Sbjct: 169 AEVQLWDVQQQKRL-RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVA 224
Query: 631 TKGGTAQ----VRFQPRIGQLLAAASDKVVSIFD----------IETDRQTHSLQGHAEL 676
T G +Q +R+ P L + +D +V+++ ++T Q QG +
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---QGAVKA 281
Query: 677 VNYICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
V + W +N LA+ S +++W++ SG C+ + ++ +Q S ++ P Y L+
Sbjct: 282 VAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338
Query: 734 GGISS--LELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
G + L +W K + H + + +L SP VASA+ D +++LW+
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 17/250 (6%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
++ + +G LA +V LW++ + H + V + + NS L++ S
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 207
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
+ D +GHS + L + P L NDN + W P
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGW 266
Query: 630 IT-------KGGTAQVRFQPRIGQLLAAA---SDKVVSIFDIETDRQTHSLQGHAELVNY 679
+ +G V + P +LA SD+ + I+++ + ++ H+++ +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS- 325
Query: 680 ICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736
I W + L S +QN + +W + + EL + ++ S P +T+
Sbjct: 326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385
Query: 737 SSLELWNMAE 746
+L LW E
Sbjct: 386 ETLRLWRCFE 395
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
Query: 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDV 555
V + + +V ++ DG+ LAS G+D V +W + P H+ V V
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 556 RFRP-NSSQLAT--ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC--- 609
+ P S+ LAT + D+ +R+W+ + C A HS + S+ + P +L
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISGHG 340
Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSI---FDIET 663
F N++ W KG T++V P + +AA+D+ + + F+++
Sbjct: 341 FA--QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398
Query: 664 DRQ 666
R+
Sbjct: 399 ARR 401
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 521 LLASSGHDRKVVLW---NMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
L S D+K+++W N +T + T + H + V + F P S LAT S DK+V LW
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
D N ++ H I + + P + D + W ++
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS------------- 356
Query: 637 QVRFQPRIG--QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVS 693
+IG Q A D + I GH ++ W+ N + + SVS
Sbjct: 357 ------KIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWIICSVS 402
Query: 694 Q-NLVKVWSMA 703
+ N+++VW MA
Sbjct: 403 EDNIMQVWQMA 413
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
+ + ++V C F+ + +LA+ D+ V LW++ L+ + + E HK + V++ P
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
N + LA++ D+ + +WD + P + GH++ I ++P +
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 607 LFCFCDNDNEIQYWSI 622
+ C DN +Q W +
Sbjct: 397 IICSVSEDNIMQVWQM 412
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 111/284 (39%), Gaps = 48/284 (16%)
Query: 547 DHKSVVTDVRFRP-NSSQLATASVDKSVRLWD----AANPNFCSQA-----YTGHSSPIM 596
+H+ V R+ P N+ +AT + V ++D + P + GH
Sbjct: 130 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 189
Query: 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-------ITKGGTAQVRFQPRIGQLL- 648
L ++P +D+ I W IN H I G TA V + LL
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV--EDVAWHLLH 247
Query: 649 -----AAASDKVVSIFDIE---TDRQTHSLQGHAELVNYICWDTNGDYLASV--SQNLVK 698
+ A D+ + I+D T + +H++ H VN + ++ +++ + + V
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 699 VWSMASGEC-IQELSSNGNQFHSCVFHPSYSTLLVVGGIS-SLELWNMA---ENKSMTIA 753
+W + + + + S+ ++ + P T+L G L +W+++ E +S A
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 754 ------------AHENIISALAQSP-VTGMVASASHDSSVKLWK 784
H IS + +P ++ S S D+ +++W+
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
+ + ++V C F+ + +LA+ D+ V LW++ L+ + T E HK + V + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
N + LA++ D+ + +WD + P + GH++ I ++P +
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 607 LFCFCDNDNEIQYWSI 622
+ C DN +Q W +
Sbjct: 391 VICSVSEDNIMQIWQM 406
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 521 LLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDVRFRPNSS-QLATASVDKSVRL 575
L S D+K+++W+ + T S P + H + V + F P S LAT S DK+V L
Sbjct: 244 LFGSVADDQKLMIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT 635
WD N + H I + + P + D + W ++
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS------------ 350
Query: 636 AQVRFQPRIGQLLAA--ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASV 692
+IG+ +A A D + I GH ++ W+ N + + SV
Sbjct: 351 -------KIGEEQSAEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWVICSV 395
Query: 693 SQ-NLVKVWSMA 703
S+ N++++W MA
Sbjct: 396 SEDNIMQIWQMA 407
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 561 SSQLATASVDKSVRLWDA-ANPNF-----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
S L +AS D +V LWD A P +TGHS+ + + +H LF +D
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 615 NEIQYWSINPFLC---THITKGGTAQVR---FQPRIGQLLAAAS-DKVVSIFDIETDR-Q 666
++ W +H+ TA+V F P +LA S DK V+++D+ + +
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 667 THSLQGHAELVNYICWDTNGDYL--ASVSQNLVKVWSMA 703
H+ + H + + + W + + + +S + + VW ++
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPED-------------- 547
S ++ H+S + +LASSG DR++ +W++ + E + ED
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 548 HKSVVTDVRFRPNSSQ-LATASVDKSVRLWDAA 579
H + ++D + PN + + S D +++W A
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 521 LLASSGHDRKVVLW---NMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
L S D+K+++W N +T + T + H + V + F P S LAT S DK+V LW
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
D N ++ H I + + P + D + W ++
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS------------- 354
Query: 637 QVRFQPRIG--QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVS 693
+IG Q A D + I GH ++ W+ N + + SVS
Sbjct: 355 ------KIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWIICSVS 400
Query: 694 Q-NLVKVWSMA 703
+ N+++VW MA
Sbjct: 401 EDNIMQVWQMA 411
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
+ + ++V C F+ + +LA+ D+ V LW++ L+ + + E HK + V++ P
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
N + LA++ D+ + +WD + P + GH++ I ++P +
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 607 LFCFCDNDNEIQYWSI 622
+ C DN +Q W +
Sbjct: 395 IICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 521 LLASSGHDRKVVLW---NMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
L S D+K+++W N +T + T + H + V + F P S LAT S DK+V LW
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
D N ++ H I + + P + D + W ++
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS------------- 352
Query: 637 QVRFQPRIG--QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVS 693
+IG Q A D + I GH ++ W+ N + + SVS
Sbjct: 353 ------KIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWIICSVS 398
Query: 694 Q-NLVKVWSMA 703
+ N+++VW MA
Sbjct: 399 EDNIMQVWQMA 409
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
+ + ++V C F+ + +LA+ D+ V LW++ L+ + + E HK + V++ P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
N + LA++ D+ + +WD + P + GH++ I ++P +
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 607 LFCFCDNDNEIQYWSI 622
+ C DN +Q W +
Sbjct: 393 IICSVSEDNIMQVWQM 408
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 41/294 (13%)
Query: 517 SDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
S G +LA + D V LW+ + LQ E E ++ V + + LA +
Sbjct: 34 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSS 88
Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
V+LWD + T HS+ + SL + + + I + +
Sbjct: 89 AEVQLWDVQQQKRL-RNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVA 144
Query: 631 TKGGTAQ----VRFQPRIGQLLAAASDKVVSIFD----------IETDRQTHSLQGHAEL 676
T G +Q +R+ P L + +D +V+++ ++T Q QG +
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---QGAVKA 201
Query: 677 VNYICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
V + W +N LA+ S +++W++ SG C+ + ++ +Q S ++ P Y L+
Sbjct: 202 VAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 258
Query: 734 GGISS--LELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
G + L +W K + H + + +L SP VASA+ D +++LW+
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 17/242 (7%)
Query: 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577
+G LA +V LW++ + H + V + + NS L++ S + D
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135
Query: 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT------ 631
+GHS + L + P L NDN + W P +
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 632 -KGGTAQVRFQPRIGQLLAAA---SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGD 687
+G V + P +LA SD+ + I+++ + ++ H+++ + I W +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYK 253
Query: 688 YLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744
L S +QN + +W + + EL + ++ S P +T+ +L LW
Sbjct: 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Query: 745 AE 746
E
Sbjct: 314 FE 315
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDV 555
V + + +V ++ DG+ LAS G+D V +W + P H+ V V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 556 RFRP-NSSQLAT--ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC--- 609
+ P S+ LAT + D+ +R+W+ + C A HS + S+ + P +L
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISGHG 260
Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIF 659
F N++ W KG T++V P + +AA+D+ + ++
Sbjct: 261 FA--QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
+ + ++V C F+ + +LA+ D+ V LW++ L+ + + E HK + V++ P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
N + LA++ D+ + +WD + P + GH++ I ++P +
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 607 LFCFCDNDNEIQYWSI 622
+ C DN +Q W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 521 LLASSGHDRKVVLWNM---DTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
L S D+K+++W+ +T + + + H + V + F P S LAT S DK+V LW
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
D N ++ H I + + P + D + W ++K G
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD--------LSKIGEE 353
Query: 637 QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVSQ- 694
Q P A D + I GH ++ W+ N + + SVS+
Sbjct: 354 Q---SPE------DAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWVICSVSED 396
Query: 695 NLVKVWSMA 703
N+++VW MA
Sbjct: 397 NIMQVWQMA 405
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 521 LLASSGHDRKVVLWNMDTLQTESTPED--------------HKSVVTDVRFRPNSSQ-LA 565
+LASSG DR++ +W++ + E +PED H + ++D + PN +
Sbjct: 332 ILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 391
Query: 566 TASVDKSVRLWDAANPNFCSQAYTGHSSP 594
+ S D +++W A + + G P
Sbjct: 392 SVSEDNIMQVWQMAENIYNDEDPEGSVDP 420
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 32/187 (17%)
Query: 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV--TDVRFRPNSSQLATASVDKSVRLW 576
G +L S DR V +W++ E H S V D+ N + T S D ++ +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 577 D-----------------------AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN 613
NP F GH + + ++ H ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG-VLRGHXASVRTVSGHG---NIVVSGSY 288
Query: 614 DNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670
DN + W + C +I G T ++ + + ++A+ D + I+D+E ++L
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 671 QGHAELV 677
QGH LV
Sbjct: 349 QGHTALV 355
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
+ + ++V C F+ + +LA+ D+ V LW++ L+ + T E HK + V + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
N + LA++ D+ + +WD + P + GH++ I ++P +
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 607 LFCFCDNDNEIQYW 620
+ C DN Q W
Sbjct: 391 VICSVSEDNIXQIW 404
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 561 SSQLATASVDKSVRLWDA-ANPNF-----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
S L +AS D +V LWD A P +TGHS+ + + +H LF +D
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 615 NEIQYWSINPFLC---THITKGGTAQVR---FQPRIGQLLAAAS-DKVVSIFDIETDR-Q 666
++ W +H+ TA+V F P +LA S DK V+++D+ + +
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 667 THSLQGHAELVNYICWDTNGDYL--ASVSQNLVKVWSMA 703
H+ + H + + + W + + + +S + + VW ++
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 521 LLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDVRFRPNSS-QLATASVDKSVRL 575
L S D+K+ +W+ + T S P + H + V + F P S LAT S DK+V L
Sbjct: 244 LFGSVADDQKLXIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
WD N + H I + + P + D + W +
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPED-------------- 547
S ++ H+S + +LASSG DR++ +W++ + E + ED
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 548 HKSVVTDVRFRPNSSQ-LATASVDKSVRLWDAA 579
H + ++D + PN + + S D ++W A
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIWQXA 407
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 38/331 (11%)
Query: 488 QKQPTKGFTFCEVGCIRS---RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST 544
Q + F ++ C R+ + KV ++ + + S+ D ++++WN T Q
Sbjct: 44 QGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA 103
Query: 545 PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA-----NPNF-CSQAYTGHSSPIMSL 598
+ H V + F PN +A +D + +++ + + N S+ TGH S
Sbjct: 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 599 DFHPKKTDLFCFCDNDNEIQYWSIN-----PFLCTHITKGGTAQVRFQPRIGQL-----L 648
+ P + D W + + G TA V I L +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LSLSINSLNANMFI 222
Query: 649 AAASDKVVSIFDIE-TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
+ + D V ++D+ T R + GH +N + + +G + S + +++ M +G
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 707 CIQ----ELSSNGNQF---HSCVFHPSYSTLLVVGGISS--LELWN-----MAENKSMTI 752
+Q E N N+ S F S S L+ G S+ +W+ M N
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAF--SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340
Query: 753 AAHENIISALAQSPVTGMVASASHDSSVKLW 783
+HE IS L S + + S D ++K+W
Sbjct: 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 466 LLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLAS- 524
LL GR G+L + P +GF C G +++ G L+AS
Sbjct: 45 LLGASSLSGRCWAGSLWLFKDPCAAPNEGF--CSAG-VQTEAGVADLTWVGERGILVASD 101
Query: 525 SGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580
SG V LW +D +T + +H +V+ V + +Q + S D +++WD A
Sbjct: 102 SG---AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW 620
S +Y H++ + + P K +F C DN I W
Sbjct: 159 QVVLS-SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
C + V+ S G S D + +W++ S+ H + VT V P+
Sbjct: 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181
Query: 562 -SQLATASVDKSVRLWDAANPNFCSQAYTGHSSP---IMSLDFHPKKTDLFCFCDNDNEI 617
S + S D + LWD P SQ G S+P SL +HP+++++F F D + +
Sbjct: 182 DSVFLSCSEDNRILLWDTRCPKPASQ--IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239
Query: 618 QYW---SINPFLCTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGH 673
S + L + + + F P LA+ S D +++ D S Q H
Sbjct: 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAH 298
Query: 674 AELVNYICW 682
+ V W
Sbjct: 299 RDFVRDATW 307
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 730 LLVVGGISSLELWNMAENKSMTIA-----AHENIISALAQSPVTGMVASASHDSSVKLW 783
+LV ++ELW + EN+++ ++ H++I+S ++ S S D +K+W
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWN-MDTLQTESTPED------HKSVVTDVRFRPNSS 562
V ++ DG L AS+G D +VL+N +D +T +D H V + + P+ +
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 563 QLATASVDKSVRLWDAA 579
++A+AS DK++++W+ A
Sbjct: 253 KIASASADKTIKIWNVA 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLW----NMDTLQTESTPEDHKSVVTDVRFRPNSSQ 563
+++T FS++G L ++ RKV+ + N + T S H + V V + P++ +
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTAKVACVSWSPDNVR 550
Query: 564 LATASVDKSVRLWDAANPN 582
LAT S+D SV +W+ P+
Sbjct: 551 LATGSLDNSVIVWNMNKPS 569
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 658 IFDIETDRQTHSLQGHAELVNYICWDTNGDY--LASVSQNLVKVWSMASGECIQELSSNG 715
+F +T +L G A +N + + + + ++ N V ++ + +
Sbjct: 131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 190
Query: 716 NQFHSCVFHPSYSTLLVVGGISSLELWN--------MAENKSMTIAAHENIISALAQSPV 767
HS ++P S GG ++ L+N + E+ S+ AH + L SP
Sbjct: 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250
Query: 768 TGMVASASHDSSVKLW 783
+ASAS D ++K+W
Sbjct: 251 GTKIASASADKTIKIW 266
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV--------TDVRFRP 559
+KV C +S D LA+ D V++WNM+ P DH ++ +
Sbjct: 537 AKVACVSWSPDNVRLATGSLDNSVIVWNMN------KPSDHPIIIKGAHAMSSVNSVIWL 590
Query: 560 NSSQLATASVDKSVRLWDA 578
N + + +A D +++ W+
Sbjct: 591 NETTIVSAGQDSNIKFWNV 609
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQLATASV 569
+C S+D + +A G D KV ++ + +E H + +T V F N + L
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 511
Query: 570 DKSVRLWDAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623
+ V + AN NF + ++T H++ + + + P L DN + W++N
Sbjct: 512 SRKVIPYSVAN-NFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN 566
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQLATASVDKSV 573
+S DG +AS+ D+ + +WN+ TL+ E T P + + D + ++ A S+ +
Sbjct: 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR--IEDQQLGIIWTKQALVSISANG 304
Query: 574 RLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623
+ + NP S Q GH+ I +L LF D + I W I+
Sbjct: 305 FI-NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS-ADAEGHINSWDIS 354
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
++G ++ +S+V + SDG LAS G+D V +W+ + + T +H + V V +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268
Query: 559 P-NSSQLAT--ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC---FCD 612
P S+ LAT ++DK + W+AA + G S + SL + P ++ F D
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPD 326
Query: 613 NDNEIQYWS 621
N+ I +S
Sbjct: 327 NNLSIWSYS 335
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 646 QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW-DTNGDYLASVSQNL---VKVWS 701
QL + +D VV I+D + + H V + W + LA+ + + W+
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
Query: 702 MASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI--SSLELWNMAEN---KSMTIAAHE 756
A+G + + + G+Q S ++ P ++ G ++L +W+ + + K + I AH+
Sbjct: 291 AATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD 349
Query: 757 NIISALAQSPVTGMVASASHDSSVKLWK 784
+ A SP ++++A+ D ++K W+
Sbjct: 350 TRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 664 DRQTHSLQGHAELVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCV 722
+ Q +LQGH+ V + W ++G LAS + N+V++W S +++ +
Sbjct: 207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266
Query: 723 FHPSYSTLLVVGGIS---SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH--- 776
+ P S LL GG + + WN A + + +++L SP + + S +H
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMS-THGFP 325
Query: 777 DSSVKLW 783
D+++ +W
Sbjct: 326 DNNLSIW 332
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
H ++ D +LAT S DK++++++ TGH P+ +D+ HPK
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIGQ-LLAAASDKVVSI 658
+ C D ++ W + I V++ P G LL A+SD VS+
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
+ + + T + HA VN W + NG ++ + NLVK+W
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 703 AS 704
S
Sbjct: 190 NS 191
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
H ++ D ++AT S DK++++++ TGH P+ +D+ HPK
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIG-QLLAAASDKVVSI 658
+ C D ++ W + I V++ P G LL A+SD VS+
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
+ + + T + HA VN W + NG ++ + NLVK+W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 703 AS 704
S
Sbjct: 188 NS 189
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
H ++ D +LAT S DK++++++ TGH P+ +D+ HPK
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIGQ-LLAAASDKVVSI 658
+ C D ++ W + I V++ P G LL A+SD VS+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
+ + + T + HA VN W + NG ++ + NLVK+W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 703 AS 704
S
Sbjct: 188 NS 189
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 50/244 (20%)
Query: 514 HFSSDGKL------LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
HF SD L SS D+ + LW++ T T H+S V V F P++ Q+ +A
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 568 SVDKSVRLWDA-ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
++ ++LW+ F S HS + + + P + N++Q PF
Sbjct: 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-------IMKSANKVQ-----PFA 184
Query: 627 CTHITKGGTAQVR-----FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
+ G +++ FQ R ++ + H VN++
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR------------------------YTFKAHESNVNHLS 220
Query: 682 WDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLE 740
NG Y+A+ ++ + +W + + Q G+ + F+P + VG ++
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVK 279
Query: 741 LWNM 744
++N+
Sbjct: 280 IFNL 283
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWD-TNGDYLASVSQNLVKVWSMASGE 706
++++ DK + ++D+ T GH V + + N L++ ++ +K+W++ GE
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GE 150
Query: 707 CIQELSSNGNQFHS----CV--------------FHPSYSTLLVVGGISSLELWNMAENK 748
C + SS + HS CV F P +++ VG L++WN
Sbjct: 151 C--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS---VGWDGRLKVWNTNFQI 205
Query: 749 SMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
T AHE+ ++ L+ SP +A+ D + +W
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 647 LLAAASDKVVSIFDIETDRQT-------HSLQGHAELVNYICWDTNGDYLASVSQN-LVK 698
L++ + DK V I+ + + Q +L GH V+ + + S S + ++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHEN- 757
+W + +G + + ++ +S F P +L G ++LWN+ + A EN
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 758 --IISALAQSPVTG----------MVASASHDSSVKLW 783
+S + SP+ AS D +K+W
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
S++T F G+ L SS D ++ +W++ T H++ VTD+ + +A
Sbjct: 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199
Query: 568 SVDKSVRLWDAA 579
S+D ++RLW+
Sbjct: 200 SLDGTIRLWECG 211
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
S++T F G+ L SS D ++ +W++ T H++ VTD+ + +A
Sbjct: 137 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 196
Query: 568 SVDKSVRLWDAA 579
S+D ++RLW+
Sbjct: 197 SLDGTIRLWECG 208
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 548 HKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQ--AYTGHSSPIMSLDFHPKK 604
HK+ VT F P L AT+SVD +V+LWD N + A H P+ + F+P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 605 TDLFCFCDNDNEIQYWS 621
+ D NEI+ +S
Sbjct: 262 STKLLTTDQRNEIRVYS 278
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
H ++ D +LAT S DK++++++ TGH P+ +D+ HPK
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIG-QLLAAASDKVVSI 658
+ C D ++ W + I V++ P G LL A+SD VS+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
+ + + T + HA VN W + NG ++ + NLVK+W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 703 AS 704
S
Sbjct: 188 NS 189
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 548 HKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQ--AYTGHSSPIMSLDFHPKK 604
HK+ VT F P L AT+SVD +V+LWD N + A H P+ + F+P
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 605 TDLFCFCDNDNEIQYWS 621
+ D NEI+ +S
Sbjct: 263 STKLLTTDQRNEIRVYS 279
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 98/269 (36%), Gaps = 70/269 (26%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA-YTGHSSPIMSLDF-HPKKT 605
H+ ++ D + ++LAT S D+SV+++D N A GH P+ + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR 665
++ C D ++ W + GT +
Sbjct: 72 NILASCSYDRKVIIWR---------EENGTWE---------------------------- 94
Query: 666 QTHSLQGHAELVNYICWDTN--GDYLASVSQNLVKVWSMASGECIQELSSNGNQFH---- 719
++H GH VN +CW + G LA S + +GE E+ N
Sbjct: 95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154
Query: 720 -----------SCVFHPS-----YSTLLVVGGISSL-ELWNMAEN----KSMTIAAHENI 758
S + HPS Y GG +L +LW E+ + + AH +
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 759 ISALAQSPVTGM----VASASHDSSVKLW 783
+ +A +P G+ +AS S D V +W
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 519 GKLLASSGHDRKVVLWNMDTLQTESTPE--DHKSVVTDVRFRPNSSQ--LATASVDKSVR 574
G +LAS +DRKV++W + E + E H S V V + P+ LA S D ++
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 575 L 575
L
Sbjct: 131 L 131
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 647 LLAAASDKVVSIFDIETDRQTHSLQGH----AELVNYIC---WDTNGDY-LASV--SQNL 696
+ A V++++ + + LQ + A+ Y C +D+N + L +V S+ +
Sbjct: 73 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 132
Query: 697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV-VGGISSLELWNMAENKSMTI--- 752
+++ + + +CI+ +GN + FHP LL+ V +L LWN+ + + I
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 753 -AAHENIISALAQSPVTGMVASASHDSSVKLWK 784
H + + + + + S D S+KLW+
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 225
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
C + Y GH + I L FHP+ +L D+ ++ W+I
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 647 LLAAASDKVVSIFDIETDRQTHSLQGH----AELVNYIC---WDTNGDY-LASV--SQNL 696
+ A V++++ + + LQ + A+ Y C +D+N + L +V S+ +
Sbjct: 37 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96
Query: 697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV-VGGISSLELWNMAENKSMTI--- 752
+++ + + +CI+ +GN + FHP LL+ V +L LWN+ + + I
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 753 -AAHENIISALAQSPVTGMVASASHDSSVKLWK 784
H + + + + + S D S+KLW+
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
C + Y GH + I L FHP+ +L D+ ++ W+I
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 24/224 (10%)
Query: 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-----THI 630
WD+ N +GHS I + + +D + ++ PF TH
Sbjct: 147 WDSGN---SLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHH 203
Query: 631 TKGGTAQ-VRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVN----YICWDT 684
+G + V F P G+ ++ SD+ +S FD ++ ++ E V + W
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 685 NGDYLASVSQNLVKVWSMASGECIQELSSN----GNQFHSCVFHPSYSTLLVVGGISSLE 740
+ + + ++VW + + +C+Q+ + + GNQ V ++ + +L
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ-QVGVVATGNGRIISLSLDGTLN 322
Query: 741 LWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ + ++ + TI+ H I+AL +P+ S S+D + W
Sbjct: 323 FYELGHDEVLKTISGHNKGITALTVNPLI----SGSYDGRIXEW 362
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 647 LLAAASDKVVSIFDIETDRQTHSLQGH----AELVNYIC---WDTNGDY-LASV--SQNL 696
+ A V++++ + + LQ + A+ Y C +D+N + L +V S+ +
Sbjct: 36 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 95
Query: 697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV-VGGISSLELWNMAENKSMTI--- 752
+++ + + +CI+ +GN + FHP LL+ V +L LWN+ + + I
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 753 -AAHENIISALAQSPVTGMVASASHDSSVKLWK 784
H + + + + + S D S+KLW+
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
C + Y GH + I L FHP+ +L D+ ++ W+I
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 647 LLAAASDKVVSIFDIETDRQTHSLQGH----AELVNYIC---WDTNGDY-LASV--SQNL 696
+ A V++++ + + LQ + A+ Y C +D+N + L +V S+ +
Sbjct: 36 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 95
Query: 697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV-VGGISSLELWNMAENKSMTI--- 752
+++ + + +CI+ +GN + FHP LL+ V +L LWN+ + + I
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 753 -AAHENIISALAQSPVTGMVASASHDSSVKLWK 784
H + + + + + S D S+KLW+
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
C + Y GH + I L FHP+ +L D+ ++ W+I
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 647 LLAAASDKVVSIFDIETDRQTHSLQGH----AELVNYIC---WDTNGDY-LASV--SQNL 696
+ A V++++ + + LQ + A+ Y C +D+N + L +V S+ +
Sbjct: 32 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 91
Query: 697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV-VGGISSLELWNMAENKSMTI--- 752
+++ + + +CI+ +GN + FHP LL+ V +L LWN+ + + I
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 753 -AAHENIISALAQSPVTGMVASASHDSSVKLWK 784
H + + + + + S D S+KLW+
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 184
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
C + Y GH + I L FHP+ +L D+ ++ W+I
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-----THI 630
WD+ N +GHS I + + +D + ++ PF TH
Sbjct: 147 WDSGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203
Query: 631 TKGGTAQ-VRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVN----YICWDT 684
+G + V F P G+ ++ SD+ +S FD ++ ++ E V + W
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 685 NGDYLASVSQNLVKVWSMASGECIQELSSNGNQF---HSCVFHPSYSTLLVVGGISSLEL 741
+ + + ++VW + + +C+Q+ + + Q V ++ + +L
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323
Query: 742 WNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
+ + ++ + TI+ H I+AL +P+ S S+D + W
Sbjct: 324 YELGHDEVLKTISGHNKGITALTVNPLI----SGSYDGRIMEW 362
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVDKSVR 574
S+ +++ + + V+L NMD + + HK VT V P LATASVD++V+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMDGKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 575 LWDAANPN-FCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
+WD S Y+ H P+ + F P L D +EI+ +S + + C
Sbjct: 278 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TDQKSEIRVYSASQWDC 331
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMA---SGECIQELS--SNGNQFH 719
RQ ++L H E+V + ++ + + VKVW ++ + + +L + N
Sbjct: 43 RQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101
Query: 720 SCVFHPSYSTLLVVGGISSLELWNMAE---NKSMTIAAHENIISALAQSPVTGMVASASH 776
SC P TL+V G S+L +W++A + + ALA SP + + S
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161
Query: 777 DSSVKLW 783
D ++ +W
Sbjct: 162 DGNIAVW 168
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVDKSVR 574
S+ +++ + + V+L NMD + + HK VT V P LATASVD++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 575 LWDAANPN-FCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
+WD S Y+ H P+ + F P L D +EI+ +S + + C
Sbjct: 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TDQKSEIRVYSASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVDKSVR 574
S+ +++ + + V+L NMD + + HK VT V P LATASVD++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 575 LWDAANPN-FCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
+WD S Y+ H P+ + F P L D +EI+ +S + + C
Sbjct: 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TDQKSEIRVYSASQWDC 330
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 19/135 (14%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
H+ +T V++ L + S D S +W + N GH+ I S+D D
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSID-----VDC 84
Query: 608 FC-FC---DNDNEIQYWSINPFLCTHITKGGT--AQVRFQPRIGQLLAAASDKV------ 655
F +C D I+ W ++ C K +V F P G A D V
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGS 143
Query: 656 VSIFDIETDRQTHSL 670
++I++IE D TH L
Sbjct: 144 INIYEIERDSATHEL 158
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 564 LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS-- 621
+ + S DK+ ++W + + QA+ + F K F D I+ W
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK---FLTASADKTIKLWQND 173
Query: 622 --INPFLCTHITKGGTAQVRFQPRI--GQLLAAASDKVVSIFDIETDRQTHSLQGHAELV 677
I F H VR + G ++ ++D ++ + D T + +GH V
Sbjct: 174 KVIKTFSGIH-----NDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFV 228
Query: 678 NYICWDTNGDYLASVSQNLVKVWSMASGECIQELS 712
I NGD ++ V++WS +G Q ++
Sbjct: 229 YCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT 263
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 689 LASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG----ISSLELWN 743
+ASVS++ V++WS + + + G F + V + S LL+ GG I+ + L+
Sbjct: 32 VASVSRDGTVRLWS-KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 744 MA-ENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
+ E+ T+ H+ + +L+ G+V S S D + K+WK
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK 130
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDK 571
C S ++ S D+ +W +L + H + V D + S ++ TAS DK
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD--LFCFCDNDNEIQYWSINPFLCTH 629
+++LW + + ++G + ++ H D F C ND I+ +
Sbjct: 166 TIKLW---QNDKVIKTFSGIHNDVVR---HLAVVDDGHFISCSNDGLIKLVDXHTGDVLR 219
Query: 630 ITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG 686
+G + V + P G +++ D+ V I+ E + A + + +NG
Sbjct: 220 TYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNG 278
Query: 687 DYLASVSQNLVKVWS 701
D + S NLV+++S
Sbjct: 279 DIIVGSSDNLVRIFS 293
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRL 575
SDG S G D V +W++ + H S V V P + + D + L
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 576 WDAANPNFCSQAYTGHSSPI-MSLDFHPKKTDLFCFCDNDNEIQYWSI-NP 624
WD P ++ S I S+ +HP+K D F D + +I NP
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 730 LLVVGGISSLELWNMAENKSMTI-----AAHENIISALAQSPVTGMVASASHDSSVKLW 783
+LV ++ELW + E +S+ + H++I+ L+ S D SVK+W
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 463 MESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL 522
+E + H R ++ E G + +V ++ N +VT ++ D +
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRI 67
Query: 523 ASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580
+ G DR +W + T + VR+ PN + A S + + +
Sbjct: 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 127
Query: 581 PN---FCSQAYTGHSSPIMSLDFHPKKTDL 607
N C S ++SLD+HP L
Sbjct: 128 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD--TLQTESTPEDHKSV 551
G + +V ++ N +VT ++ D + + G DR +W + T +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 552 VTDVRFRPNSSQLATASVDKSVRLWDAANPN---FCSQAYTGHSSPIMSLDFHPKKTDL 607
VR+ PN + A S + + + N C S ++SLD+HP L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDK 571
CH D LL SSG D V+LWN ++ + S + +F P + L A AS D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 572 SVRL 575
+ +
Sbjct: 329 KIEV 332
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK--SVVTDVRFRPNSSQLATASVDKSVRLW 576
G + A+ D + LW++ +E + S D+ + N+ +A A + S+ L+
Sbjct: 35 GTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94
Query: 577 --DAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-----PFLCT 628
+ AN S A ++ HSS + ++ F+ K+ ++ N+ EI W +N P T
Sbjct: 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154
Query: 629 HITKGGT-------AQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQ 666
+T G + + + + + A+A S SI+D++ ++
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 26/159 (16%)
Query: 566 TASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-- 623
T VDK+V L GH++P++ + + P ++ D + W I
Sbjct: 67 TGRVDKNVPL------------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 624 ----PFLCTHITKGGTAQ----VRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSL--QG 672
P IT G + V + P LL+A D V+ ++D+ T +L
Sbjct: 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV 174
Query: 673 HAELVNYICWDTNGDYLA-SVSQNLVKVWSMASGECIQE 710
H + + + W +G + S V+V G + E
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 499 EVGCIRSRNSKVTCCHFSSD---GKLLASSGHDRKVVLWNM-DTLQTESTPED-HKSVVT 553
++ S + + C FS G L + V W + D+ QT + H V
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 554 DVRFRPNSSQLATASVDKSVRLWD 577
DV + + S++ TAS DK+ ++WD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWD 114
>pdb|3S1S|A Chain A, Characterization And Crystal Structure Of The Type Iig
Restriction Endonuclease Bpusi
Length = 878
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 17 HDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGG 50
H F+ R L SA+AF+ E KV A++ GG
Sbjct: 727 HTVFIPRALRRSARAFINEQKVFCSTNALEVFGG 760
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 566 TASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-- 623
T VDK+V P C GH++P++ + + P ++ D + W I
Sbjct: 67 TGRVDKNV-------PLVC-----GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 624 ----PFLCTHITKGGTAQ----VRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSL--QG 672
P IT G + V + P LL+A D V+ ++D+ T +L
Sbjct: 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV 174
Query: 673 HAELVNYICWDTNGDYLA-SVSQNLVKVWSMASGECIQE 710
H + + + W +G + S V+V G + E
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 564 LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW 620
+AT D + +WD H + + + FHP + C D + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,929,900
Number of Sequences: 62578
Number of extensions: 787494
Number of successful extensions: 2772
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 435
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)