Query 047260
Match_columns 784
No_of_seqs 1114 out of 2845
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.8E-44 8.2E-49 368.6 26.0 320 435-784 112-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.7E-42 5.8E-47 354.9 26.2 287 497-784 105-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-40 9.9E-45 343.0 24.7 279 504-784 172-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.5E-37 5.3E-42 309.5 34.5 289 494-784 42-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-38 3.3E-43 331.6 22.2 279 436-743 173-458 (459)
6 KOG0279 G protein beta subunit 100.0 1.1E-34 2.5E-39 289.0 32.3 283 498-784 6-311 (315)
7 KOG0265 U5 snRNP-specific prot 100.0 4.1E-35 8.8E-40 294.7 28.6 283 499-782 39-334 (338)
8 KOG0285 Pleiotropic regulator 100.0 4.2E-35 9.2E-40 299.7 26.7 287 495-784 139-437 (460)
9 cd00200 WD40 WD40 domain, foun 100.0 2E-33 4.3E-38 292.8 37.4 282 501-784 3-289 (289)
10 KOG0295 WD40 repeat-containing 100.0 5.8E-35 1.3E-39 300.0 24.9 287 497-784 98-404 (406)
11 KOG0273 Beta-transducin family 100.0 7E-34 1.5E-38 300.1 31.3 321 448-784 188-521 (524)
12 KOG0315 G-protein beta subunit 100.0 1.8E-33 4E-38 276.0 31.7 287 449-765 8-309 (311)
13 KOG0284 Polyadenylation factor 100.0 2.7E-35 5.9E-40 305.9 18.0 276 507-784 96-378 (464)
14 KOG0266 WD40 repeat-containing 100.0 9.1E-33 2E-37 314.4 40.2 284 500-784 151-452 (456)
15 KOG0279 G protein beta subunit 100.0 2.7E-33 5.9E-38 279.2 29.6 288 436-745 13-313 (315)
16 KOG0315 G-protein beta subunit 100.0 4.5E-33 9.7E-38 273.3 28.3 263 520-784 11-286 (311)
17 KOG0318 WD40 repeat stress pro 100.0 3.2E-32 7E-37 290.6 35.8 290 493-784 176-600 (603)
18 KOG0293 WD40 repeat-containing 100.0 4.2E-33 9E-38 289.5 22.8 289 494-784 211-511 (519)
19 KOG0645 WD40 repeat protein [G 100.0 2.3E-31 5.1E-36 264.3 31.8 281 497-784 4-309 (312)
20 KOG0273 Beta-transducin family 100.0 5E-32 1.1E-36 286.1 28.5 280 500-784 172-480 (524)
21 KOG0286 G-protein beta subunit 100.0 2.4E-31 5.3E-36 266.6 30.6 279 436-743 53-343 (343)
22 KOG0282 mRNA splicing factor [ 100.0 4.9E-33 1.1E-37 294.9 19.0 285 498-784 205-503 (503)
23 KOG0319 WD40-repeat-containing 100.0 1.1E-31 2.4E-36 296.4 29.3 287 497-784 313-617 (775)
24 KOG0296 Angio-associated migra 100.0 3.8E-31 8.3E-36 272.1 31.1 320 434-784 60-396 (399)
25 KOG0263 Transcription initiati 100.0 7.7E-32 1.7E-36 301.0 28.1 273 500-774 371-703 (707)
26 PLN00181 protein SPA1-RELATED; 100.0 1.8E-30 4E-35 315.7 40.4 279 503-784 479-791 (793)
27 KOG0291 WD40-repeat-containing 100.0 1.4E-30 3.1E-35 287.6 35.0 287 495-784 295-610 (893)
28 KOG0281 Beta-TrCP (transducin 100.0 3.8E-32 8.1E-37 276.8 16.7 269 500-784 190-475 (499)
29 KOG0318 WD40 repeat stress pro 100.0 1.4E-29 3E-34 270.5 36.8 284 499-784 139-558 (603)
30 KOG0291 WD40-repeat-containing 100.0 1.5E-29 3.3E-34 279.4 38.2 279 504-784 262-548 (893)
31 KOG0319 WD40-repeat-containing 100.0 1.2E-30 2.6E-35 288.4 28.9 316 441-784 108-575 (775)
32 KOG0263 Transcription initiati 100.0 7.4E-31 1.6E-35 293.1 27.4 274 428-705 368-651 (707)
33 KOG0276 Vesicle coat complex C 100.0 1.4E-30 3E-35 282.3 26.5 279 502-782 8-295 (794)
34 KOG0284 Polyadenylation factor 100.0 1.4E-31 3.1E-36 278.3 16.4 273 443-745 101-380 (464)
35 KOG0295 WD40 repeat-containing 100.0 2.7E-30 5.8E-35 265.7 23.9 267 450-744 119-405 (406)
36 KOG0316 Conserved WD40 repeat- 100.0 1E-29 2.2E-34 247.8 25.9 280 497-783 7-296 (307)
37 cd00200 WD40 WD40 domain, foun 100.0 1.9E-28 4.1E-33 255.2 35.1 276 439-743 10-289 (289)
38 KOG0306 WD40-repeat-containing 100.0 1.7E-29 3.7E-34 279.0 28.1 278 502-784 368-662 (888)
39 KOG0296 Angio-associated migra 100.0 8.1E-29 1.8E-33 255.0 27.7 283 499-784 56-354 (399)
40 KOG0278 Serine/threonine kinas 100.0 6.6E-30 1.4E-34 250.9 18.7 277 503-784 10-295 (334)
41 KOG0640 mRNA cleavage stimulat 100.0 4.9E-29 1.1E-33 251.1 24.5 285 498-784 103-424 (430)
42 KOG0266 WD40 repeat-containing 100.0 8.8E-29 1.9E-33 281.7 29.7 278 441-745 162-454 (456)
43 KOG0643 Translation initiation 100.0 2.1E-28 4.5E-33 242.8 26.6 279 502-783 5-314 (327)
44 KOG0292 Vesicle coat complex C 100.0 1.2E-28 2.6E-33 275.5 27.2 278 503-783 5-318 (1202)
45 KOG1407 WD40 repeat protein [F 100.0 3.2E-28 7E-33 240.8 26.8 280 501-783 14-308 (313)
46 KOG0306 WD40-repeat-containing 100.0 5.4E-28 1.2E-32 267.1 31.1 305 449-783 75-577 (888)
47 KOG0276 Vesicle coat complex C 100.0 5.7E-28 1.2E-32 262.1 28.3 272 443-741 18-295 (794)
48 KOG0275 Conserved WD40 repeat- 100.0 4.2E-29 9.1E-34 252.3 17.8 277 506-784 212-507 (508)
49 KOG0285 Pleiotropic regulator 100.0 1.1E-28 2.4E-33 252.7 20.9 242 539-784 141-387 (460)
50 KOG0313 Microtubule binding pr 100.0 6.3E-28 1.4E-32 249.4 26.6 272 506-784 104-416 (423)
51 KOG0288 WD40 repeat protein Ti 100.0 5.3E-29 1.1E-33 259.7 18.0 282 498-784 166-459 (459)
52 KOG1446 Histone H3 (Lys4) meth 100.0 6.7E-27 1.5E-31 238.0 32.5 282 498-783 5-300 (311)
53 KOG0281 Beta-TrCP (transducin 100.0 4.2E-29 9.1E-34 254.6 14.8 263 450-750 207-482 (499)
54 KOG0645 WD40 repeat protein [G 100.0 7.8E-27 1.7E-31 232.2 30.5 282 434-745 10-311 (312)
55 KOG0282 mRNA splicing factor [ 100.0 1.5E-28 3.3E-33 260.9 19.3 285 431-743 207-503 (503)
56 KOG0265 U5 snRNP-specific prot 100.0 2.4E-27 5.2E-32 238.9 26.6 280 435-743 44-336 (338)
57 KOG0268 Sof1-like rRNA process 100.0 1.5E-28 3.2E-33 252.5 15.4 278 498-784 57-343 (433)
58 PLN00181 protein SPA1-RELATED; 100.0 3.1E-26 6.6E-31 278.8 38.4 284 437-744 482-792 (793)
59 KOG0293 WD40 repeat-containing 100.0 1.4E-27 3E-32 248.5 22.3 282 439-747 225-515 (519)
60 KOG0292 Vesicle coat complex C 100.0 6.8E-27 1.5E-31 261.5 28.7 277 439-745 10-321 (1202)
61 KOG0283 WD40 repeat-containing 100.0 3.3E-27 7.1E-32 266.2 26.4 247 496-745 255-576 (712)
62 KOG0310 Conserved WD40 repeat- 100.0 1.4E-26 3.1E-31 246.4 27.4 274 506-782 25-305 (487)
63 KOG0973 Histone transcription 100.0 1.2E-26 2.7E-31 267.3 28.8 278 505-783 11-352 (942)
64 KOG0316 Conserved WD40 repeat- 100.0 1.2E-26 2.7E-31 226.3 23.8 276 436-742 15-296 (307)
65 KOG0277 Peroxisomal targeting 100.0 8.5E-27 1.8E-31 229.9 22.8 274 511-784 12-307 (311)
66 KOG0772 Uncharacterized conser 100.0 1.4E-26 3.1E-31 246.7 25.8 290 494-783 154-484 (641)
67 KOG0289 mRNA splicing factor [ 100.0 2.4E-26 5.1E-31 241.0 26.6 274 508-783 220-503 (506)
68 KOG0274 Cdc4 and related F-box 100.0 2.9E-26 6.4E-31 261.5 29.5 267 505-784 206-480 (537)
69 KOG0305 Anaphase promoting com 99.9 4.1E-26 9E-31 251.7 28.6 268 510-784 180-459 (484)
70 KOG0275 Conserved WD40 repeat- 99.9 4.1E-27 8.9E-32 238.0 17.7 281 441-743 216-507 (508)
71 KOG0278 Serine/threonine kinas 99.9 8.9E-27 1.9E-31 229.0 19.1 249 498-750 50-302 (334)
72 PTZ00421 coronin; Provisional 99.9 5.4E-25 1.2E-29 250.6 34.9 261 507-767 20-314 (493)
73 KOG0294 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 226.7 27.2 289 456-765 6-306 (362)
74 PTZ00420 coronin; Provisional 99.9 8.6E-25 1.9E-29 250.3 36.2 244 525-768 50-318 (568)
75 KOG0313 Microtubule binding pr 99.9 1.7E-25 3.7E-30 231.5 26.8 265 451-745 115-418 (423)
76 KOG0641 WD40 repeat protein [G 99.9 7.9E-24 1.7E-28 205.2 32.3 287 495-783 21-346 (350)
77 KOG0647 mRNA export protein (c 99.9 8.5E-25 1.9E-29 220.6 26.0 267 506-774 26-311 (347)
78 KOG0308 Conserved WD40 repeat- 99.9 8.9E-26 1.9E-30 246.6 19.4 268 517-784 35-325 (735)
79 KOG0288 WD40 repeat protein Ti 99.9 8.8E-26 1.9E-30 235.7 18.4 273 440-742 177-458 (459)
80 KOG0274 Cdc4 and related F-box 99.9 1.2E-24 2.6E-29 248.3 29.3 263 451-750 218-487 (537)
81 KOG0310 Conserved WD40 repeat- 99.9 5.6E-25 1.2E-29 234.4 23.9 241 503-746 64-310 (487)
82 KOG0772 Uncharacterized conser 99.9 5.4E-25 1.2E-29 234.7 22.8 285 435-742 164-484 (641)
83 KOG0305 Anaphase promoting com 99.9 2.4E-24 5.3E-29 237.8 28.4 237 507-747 217-463 (484)
84 KOG0277 Peroxisomal targeting 99.9 4.7E-25 1E-29 217.6 20.1 245 498-744 52-308 (311)
85 KOG1539 WD repeat protein [Gen 99.9 2.2E-23 4.8E-28 233.5 35.5 330 427-783 191-645 (910)
86 KOG0973 Histone transcription 99.9 1.3E-24 2.8E-29 250.7 26.3 290 441-747 16-357 (942)
87 KOG0300 WD40 repeat-containing 99.9 7.1E-25 1.5E-29 221.4 20.9 287 495-784 136-474 (481)
88 KOG0301 Phospholipase A2-activ 99.9 2.5E-24 5.3E-29 237.1 26.9 275 498-783 5-285 (745)
89 PTZ00421 coronin; Provisional 99.9 2E-23 4.4E-28 237.8 34.4 223 502-726 70-314 (493)
90 KOG1407 WD40 repeat protein [F 99.9 1.5E-24 3.2E-29 215.0 21.6 239 543-782 14-257 (313)
91 KOG0643 Translation initiation 99.9 9.7E-24 2.1E-28 209.7 26.9 279 437-745 9-317 (327)
92 KOG0640 mRNA cleavage stimulat 99.9 2.4E-24 5.1E-29 217.4 22.3 296 440-745 114-426 (430)
93 KOG0294 WD40 repeat-containing 99.9 9.7E-24 2.1E-28 214.1 26.1 257 522-784 4-279 (362)
94 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-22 2.5E-27 217.1 35.4 262 519-784 1-277 (300)
95 KOG0283 WD40 repeat-containing 99.9 3.4E-24 7.4E-29 241.9 24.6 240 542-784 259-574 (712)
96 KOG1036 Mitotic spindle checkp 99.9 1.9E-23 4.1E-28 211.9 27.2 266 506-776 12-294 (323)
97 KOG0299 U3 snoRNP-associated p 99.9 1.7E-23 3.7E-28 221.5 27.4 277 500-780 135-450 (479)
98 KOG1408 WD40 repeat protein [F 99.9 8.9E-24 1.9E-28 231.8 25.6 286 498-784 360-711 (1080)
99 KOG0647 mRNA export protein (c 99.9 1.7E-23 3.8E-28 211.2 25.2 267 439-735 28-313 (347)
100 KOG0641 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 196.1 30.8 290 440-745 34-349 (350)
101 KOG0639 Transducin-like enhanc 99.9 3E-23 6.4E-28 220.4 26.9 276 505-784 417-702 (705)
102 KOG2096 WD40 repeat protein [G 99.9 4E-23 8.7E-28 209.4 25.8 281 499-783 78-399 (420)
103 KOG0308 Conserved WD40 repeat- 99.9 5.7E-24 1.2E-28 232.6 20.9 317 447-784 33-391 (735)
104 KOG1446 Histone H3 (Lys4) meth 99.9 4.3E-22 9.3E-27 203.0 32.0 276 438-746 14-304 (311)
105 KOG0289 mRNA splicing factor [ 99.9 4.3E-23 9.2E-28 216.7 25.3 265 453-744 233-505 (506)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-21 2.9E-26 208.8 37.4 284 452-766 2-300 (300)
107 KOG1408 WD40 repeat protein [F 99.9 1.5E-23 3.3E-28 230.0 22.1 294 453-746 394-714 (1080)
108 KOG1063 RNA polymerase II elon 99.9 2.2E-22 4.7E-27 221.7 30.1 350 429-784 182-646 (764)
109 KOG2055 WD40 repeat protein [G 99.9 6.6E-23 1.4E-27 216.9 24.7 278 506-784 212-510 (514)
110 KOG1273 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 207.0 24.2 272 510-784 26-320 (405)
111 PTZ00420 coronin; Provisional 99.9 5.5E-22 1.2E-26 227.3 33.1 216 567-784 50-291 (568)
112 KOG0268 Sof1-like rRNA process 99.9 1.1E-23 2.4E-28 216.8 16.0 282 434-748 62-348 (433)
113 KOG0301 Phospholipase A2-activ 99.9 1.7E-22 3.6E-27 222.7 26.3 260 453-747 27-290 (745)
114 KOG1332 Vesicle coat complex C 99.9 4.3E-23 9.3E-28 202.8 18.1 243 504-784 8-284 (299)
115 KOG0299 U3 snoRNP-associated p 99.9 2E-22 4.4E-27 213.4 24.4 278 445-735 149-445 (479)
116 KOG1539 WD repeat protein [Gen 99.9 2.5E-21 5.3E-26 217.2 34.3 304 454-784 175-604 (910)
117 KOG0650 WD40 repeat nucleolar 99.9 1.4E-22 2.9E-27 219.8 23.1 288 493-783 386-732 (733)
118 KOG1274 WD40 repeat protein [G 99.9 8.1E-22 1.7E-26 223.4 29.4 272 504-782 10-296 (933)
119 KOG0264 Nucleosome remodeling 99.9 1.6E-22 3.5E-27 214.4 22.3 250 498-747 115-406 (422)
120 KOG0300 WD40 repeat-containing 99.9 9.3E-22 2E-26 199.0 21.4 290 427-747 137-478 (481)
121 KOG0264 Nucleosome remodeling 99.9 8.6E-22 1.9E-26 208.9 21.2 238 547-784 122-402 (422)
122 KOG0269 WD40 repeat-containing 99.9 3.8E-22 8.3E-27 222.1 19.3 272 508-781 40-335 (839)
123 KOG2048 WD40 repeat protein [G 99.9 2E-20 4.4E-25 206.2 32.2 281 497-782 15-315 (691)
124 KOG0267 Microtubule severing p 99.9 3.2E-23 6.9E-28 229.0 10.2 251 519-777 4-259 (825)
125 KOG2106 Uncharacterized conser 99.9 6.6E-20 1.4E-24 195.7 34.6 284 496-784 234-624 (626)
126 KOG0321 WD40 repeat-containing 99.9 1.2E-21 2.7E-26 214.0 22.0 271 513-784 55-389 (720)
127 KOG0646 WD40 repeat protein [G 99.9 2.6E-21 5.6E-26 205.5 23.0 239 506-744 80-349 (476)
128 KOG1036 Mitotic spindle checkp 99.9 7.4E-21 1.6E-25 193.1 25.3 261 440-735 15-294 (323)
129 KOG0639 Transducin-like enhanc 99.9 1.1E-21 2.5E-26 208.5 19.2 281 437-744 418-703 (705)
130 KOG0267 Microtubule severing p 99.9 8.3E-23 1.8E-27 225.7 9.4 237 498-736 19-259 (825)
131 KOG2445 Nuclear pore complex c 99.9 9.4E-21 2E-25 191.9 23.4 252 504-784 10-316 (361)
132 KOG2106 Uncharacterized conser 99.9 1.7E-19 3.8E-24 192.5 33.7 272 504-784 197-519 (626)
133 KOG1274 WD40 repeat protein [G 99.9 2.9E-20 6.2E-25 210.9 27.0 235 547-784 11-260 (933)
134 KOG0646 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 197.3 25.0 252 529-784 18-305 (476)
135 KOG4283 Transcription-coupled 99.9 5.5E-20 1.2E-24 185.0 25.2 303 439-783 44-362 (397)
136 KOG0269 WD40 repeat-containing 99.9 2.3E-21 5E-26 216.0 16.5 234 510-745 90-340 (839)
137 KOG4328 WD40 protein [Function 99.9 4.5E-20 9.7E-25 195.5 23.6 288 494-783 173-492 (498)
138 KOG2055 WD40 repeat protein [G 99.9 5.8E-20 1.3E-24 194.7 23.3 279 439-745 214-512 (514)
139 KOG0302 Ribosome Assembly prot 99.8 5.5E-20 1.2E-24 190.6 20.5 238 504-742 148-435 (440)
140 KOG2096 WD40 repeat protein [G 99.8 3E-19 6.5E-24 181.4 22.8 238 543-783 80-357 (420)
141 KOG0307 Vesicle coat complex C 99.8 1.1E-20 2.4E-25 219.1 14.2 272 511-783 10-324 (1049)
142 KOG1332 Vesicle coat complex C 99.8 1.9E-19 4E-24 177.4 19.9 245 451-746 23-287 (299)
143 KOG0321 WD40 repeat-containing 99.8 1.8E-19 3.8E-24 197.3 21.8 279 448-747 61-393 (720)
144 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-19 5.7E-24 190.5 22.4 256 510-768 37-305 (673)
145 KOG1273 WD40 repeat protein [G 99.8 2.9E-19 6.3E-24 181.4 21.4 274 443-746 28-323 (405)
146 COG2319 FOG: WD40 repeat [Gene 99.8 6E-17 1.3E-21 176.9 41.5 283 497-784 145-440 (466)
147 KOG0270 WD40 repeat-containing 99.8 2.9E-19 6.3E-24 188.9 21.4 232 518-750 191-454 (463)
148 KOG4328 WD40 protein [Function 99.8 3.1E-19 6.7E-24 189.2 21.2 284 439-745 187-495 (498)
149 KOG0307 Vesicle coat complex C 99.8 5.6E-20 1.2E-24 213.4 16.6 243 506-748 63-330 (1049)
150 KOG1063 RNA polymerase II elon 99.8 2.8E-18 6.2E-23 189.5 28.2 323 441-784 270-697 (764)
151 KOG4283 Transcription-coupled 99.8 1.1E-18 2.4E-23 175.7 22.2 204 546-749 40-280 (397)
152 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.7E-23 177.5 22.7 265 510-777 52-361 (406)
153 KOG1034 Transcriptional repres 99.8 9.7E-19 2.1E-23 178.7 21.8 278 503-784 34-381 (385)
154 KOG1009 Chromatin assembly com 99.8 1.5E-18 3.3E-23 181.7 23.9 304 442-781 17-367 (434)
155 KOG1538 Uncharacterized conser 99.8 1E-18 2.2E-23 191.1 22.8 268 509-784 14-291 (1081)
156 KOG0650 WD40 repeat nucleolar 99.8 5.5E-19 1.2E-23 192.0 20.3 241 541-783 392-677 (733)
157 KOG1445 Tumor-specific antigen 99.8 1.9E-18 4.2E-23 188.0 23.7 134 651-784 600-748 (1012)
158 COG2319 FOG: WD40 repeat [Gene 99.8 9.6E-17 2.1E-21 175.3 37.7 281 502-784 60-357 (466)
159 KOG2048 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 183.3 30.5 275 441-746 28-320 (691)
160 KOG4227 WD40 repeat protein [G 99.8 4.7E-18 1E-22 176.3 22.2 281 501-784 50-385 (609)
161 KOG0302 Ribosome Assembly prot 99.8 2.8E-18 6E-23 178.1 20.0 237 546-783 148-435 (440)
162 KOG1188 WD40 repeat protein [G 99.8 2.9E-18 6.3E-23 176.2 18.8 264 520-784 41-344 (376)
163 KOG0642 Cell-cycle nuclear pro 99.8 6.8E-19 1.5E-23 191.0 14.0 254 501-755 288-572 (577)
164 KOG0644 Uncharacterized conser 99.8 3.7E-19 8E-24 199.1 10.9 274 497-783 180-465 (1113)
165 KOG2445 Nuclear pore complex c 99.8 1.1E-16 2.3E-21 162.6 26.2 268 438-765 13-341 (361)
166 KOG0322 G-protein beta subunit 99.8 5.1E-18 1.1E-22 168.9 16.2 280 499-784 6-321 (323)
167 PRK11028 6-phosphogluconolacto 99.8 3.7E-16 7.9E-21 171.1 30.7 262 522-784 5-302 (330)
168 KOG4378 Nuclear protein COP1 [ 99.8 2.7E-17 5.8E-22 175.4 20.6 217 509-727 81-305 (673)
169 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-17 3.6E-22 180.3 18.1 261 436-715 292-573 (577)
170 PRK11028 6-phosphogluconolacto 99.8 1.5E-15 3.3E-20 166.3 33.8 265 454-745 5-304 (330)
171 KOG0270 WD40 repeat-containing 99.8 2.3E-17 5.1E-22 174.6 18.3 253 448-708 189-454 (463)
172 KOG1334 WD40 repeat protein [G 99.8 6.3E-18 1.4E-22 180.4 13.3 288 496-783 131-463 (559)
173 KOG0290 Conserved WD40 repeat- 99.7 8.7E-17 1.9E-21 162.0 19.1 233 505-741 94-361 (364)
174 KOG2919 Guanine nucleotide-bin 99.7 5.2E-16 1.1E-20 158.4 24.8 276 445-736 56-361 (406)
175 KOG1240 Protein kinase contain 99.7 3E-16 6.6E-21 182.5 25.7 288 497-784 1038-1431(1431)
176 KOG1007 WD repeat protein TSSC 99.7 1.3E-16 2.8E-21 160.7 19.4 246 501-782 57-357 (370)
177 KOG1034 Transcriptional repres 99.7 9.6E-17 2.1E-21 164.2 18.0 236 506-745 88-383 (385)
178 KOG0303 Actin-binding protein 99.7 3.5E-16 7.6E-21 163.3 22.4 249 518-767 43-320 (472)
179 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.9E-20 172.2 27.7 256 529-784 222-514 (555)
180 KOG1963 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 172.4 27.0 276 505-784 203-536 (792)
181 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.7E-19 151.2 30.9 231 507-746 5-249 (391)
182 KOG1517 Guanine nucleotide bin 99.7 9.1E-16 2E-20 175.9 23.9 277 506-784 1063-1379(1387)
183 KOG0649 WD40 repeat protein [G 99.7 2.4E-15 5.1E-20 148.4 22.9 224 551-783 12-271 (325)
184 KOG1007 WD repeat protein TSSC 99.7 1.9E-15 4.1E-20 152.3 21.1 241 491-746 106-362 (370)
185 KOG1587 Cytoplasmic dynein int 99.7 2.3E-15 5E-20 171.2 24.5 242 506-747 241-518 (555)
186 KOG1524 WD40 repeat-containing 99.7 1.4E-15 3.1E-20 163.6 20.7 260 505-782 12-282 (737)
187 KOG0649 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 143.8 24.9 266 509-783 12-313 (325)
188 PRK01742 tolB translocation pr 99.7 3.6E-15 7.7E-20 169.3 24.8 231 528-767 183-426 (429)
189 KOG1523 Actin-related protein 99.7 5E-15 1.1E-19 151.5 22.2 223 503-726 6-260 (361)
190 KOG0303 Actin-binding protein 99.7 2.4E-15 5.3E-20 157.1 19.2 202 502-706 76-297 (472)
191 KOG0290 Conserved WD40 repeat- 99.7 1.2E-14 2.7E-19 146.7 23.4 267 508-776 45-356 (364)
192 KOG4227 WD40 repeat protein [G 99.7 4.6E-15 9.9E-20 154.3 20.7 287 435-745 53-387 (609)
193 KOG1538 Uncharacterized conser 99.7 4.2E-15 9.1E-20 163.1 21.4 270 440-746 14-294 (1081)
194 KOG1188 WD40 repeat protein [G 99.7 2.7E-15 5.8E-20 154.6 18.1 268 451-745 40-346 (376)
195 PF02239 Cytochrom_D1: Cytochr 99.7 1.4E-13 3.1E-18 152.2 32.6 285 498-784 27-345 (369)
196 KOG1310 WD40 repeat protein [G 99.6 1.7E-15 3.7E-20 163.4 15.0 211 498-708 41-308 (758)
197 KOG2139 WD40 repeat protein [G 99.6 8.1E-14 1.8E-18 144.5 25.5 272 507-782 98-427 (445)
198 KOG2111 Uncharacterized conser 99.6 4.9E-13 1.1E-17 137.1 29.4 266 509-781 7-317 (346)
199 PRK03629 tolB translocation pr 99.6 2.2E-13 4.8E-18 154.5 29.9 232 529-766 179-427 (429)
200 KOG2110 Uncharacterized conser 99.6 1.9E-13 4.1E-18 142.5 25.9 228 549-784 5-246 (391)
201 PRK01742 tolB translocation pr 99.6 3.2E-14 7E-19 161.5 21.6 217 501-726 197-426 (429)
202 KOG0771 Prolactin regulatory e 99.6 1.4E-14 3E-19 153.3 16.1 192 511-703 148-354 (398)
203 KOG2321 WD40 repeat protein [G 99.6 8.5E-14 1.8E-18 151.5 21.6 273 505-782 49-339 (703)
204 KOG4497 Uncharacterized conser 99.6 1.3E-13 2.7E-18 141.3 21.3 268 512-783 13-388 (447)
205 KOG0644 Uncharacterized conser 99.6 3.5E-15 7.5E-20 167.6 10.0 266 450-749 201-472 (1113)
206 KOG1445 Tumor-specific antigen 99.6 1E-13 2.2E-18 151.6 20.7 231 515-784 587-842 (1012)
207 PRK04922 tolB translocation pr 99.6 4.6E-13 1E-17 152.2 27.0 232 529-766 184-432 (433)
208 KOG1272 WD40-repeat-containing 99.6 7.1E-15 1.5E-19 156.5 10.7 261 509-778 131-401 (545)
209 KOG1517 Guanine nucleotide bin 99.6 1.7E-13 3.7E-18 157.6 22.5 242 506-748 1108-1384(1387)
210 PRK05137 tolB translocation pr 99.6 1E-12 2.2E-17 149.5 29.2 232 529-767 182-433 (435)
211 KOG1524 WD40 repeat-containing 99.6 3.6E-14 7.9E-19 152.9 15.8 226 547-776 12-246 (737)
212 KOG0771 Prolactin regulatory e 99.6 1.9E-13 4.2E-18 144.8 20.7 266 506-783 12-351 (398)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 1.8E-13 3.9E-18 148.1 20.2 242 509-765 125-383 (636)
214 KOG4497 Uncharacterized conser 99.6 1E-12 2.2E-17 134.8 24.4 270 507-779 48-425 (447)
215 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-12 2.2E-17 142.4 24.7 196 517-725 183-384 (636)
216 KOG1354 Serine/threonine prote 99.5 3.6E-13 7.7E-18 138.9 20.3 274 507-783 25-431 (433)
217 PRK02889 tolB translocation pr 99.5 1.2E-12 2.5E-17 148.6 24.9 233 529-767 176-425 (427)
218 KOG3881 Uncharacterized conser 99.5 7.3E-13 1.6E-17 139.0 21.0 260 505-767 53-342 (412)
219 PRK02889 tolB translocation pr 99.5 1.5E-12 3.2E-17 147.8 25.4 220 503-726 191-425 (427)
220 KOG1240 Protein kinase contain 99.5 9.5E-13 2.1E-17 153.9 24.0 249 534-784 1034-1332(1431)
221 KOG1963 WD40 repeat protein [G 99.5 3.1E-12 6.8E-17 146.1 27.5 269 510-782 19-318 (792)
222 PF10282 Lactonase: Lactonase, 99.5 9.2E-11 2E-15 129.4 38.6 259 506-764 35-345 (345)
223 KOG1009 Chromatin assembly com 99.5 1.2E-12 2.6E-17 137.8 21.2 282 436-747 63-374 (434)
224 KOG4594 Sequence-specific sing 99.5 1.1E-14 2.3E-19 145.7 5.3 77 4-81 12-92 (354)
225 KOG1523 Actin-related protein 99.5 1.7E-12 3.6E-17 133.2 21.1 220 547-767 8-260 (361)
226 KOG1334 WD40 repeat protein [G 99.5 1.2E-13 2.6E-18 148.0 13.2 290 433-748 137-469 (559)
227 PRK03629 tolB translocation pr 99.5 4.8E-12 1E-16 143.6 26.8 218 503-726 194-428 (429)
228 PRK04922 tolB translocation pr 99.5 3.3E-12 7E-17 145.3 24.9 219 501-725 197-432 (433)
229 KOG1310 WD40 repeat protein [G 99.5 1.5E-13 3.2E-18 148.7 12.7 210 541-750 42-308 (758)
230 KOG2315 Predicted translation 99.5 2.9E-11 6.2E-16 132.3 28.5 268 509-784 75-388 (566)
231 TIGR02800 propeller_TolB tol-p 99.4 2.9E-11 6.2E-16 136.7 28.1 230 529-764 170-416 (417)
232 KOG2111 Uncharacterized conser 99.4 2.5E-11 5.5E-16 124.6 24.5 227 551-783 7-253 (346)
233 PRK05137 tolB translocation pr 99.4 2.5E-11 5.4E-16 138.2 27.4 219 501-726 195-433 (435)
234 PF10282 Lactonase: Lactonase, 99.4 3.8E-10 8.1E-15 124.5 35.6 263 522-784 2-320 (345)
235 PF02239 Cytochrom_D1: Cytochr 99.4 9.6E-11 2.1E-15 129.8 30.2 261 520-784 6-300 (369)
236 PRK00178 tolB translocation pr 99.4 6.3E-11 1.4E-15 134.7 29.4 232 530-767 180-428 (430)
237 KOG1272 WD40-repeat-containing 99.4 3E-13 6.4E-18 144.3 8.6 229 549-784 129-360 (545)
238 KOG2321 WD40 repeat protein [G 99.4 1.3E-11 2.8E-16 134.8 21.2 235 547-784 49-300 (703)
239 KOG0322 G-protein beta subunit 99.4 6.5E-12 1.4E-16 125.7 17.1 272 440-744 16-322 (323)
240 PRK04792 tolB translocation pr 99.4 7.5E-11 1.6E-15 134.5 27.8 231 530-766 199-446 (448)
241 KOG2139 WD40 repeat protein [G 99.4 4.6E-11 9.9E-16 124.3 21.7 225 550-778 99-367 (445)
242 PF08662 eIF2A: Eukaryotic tra 99.4 3.1E-11 6.8E-16 121.8 20.2 125 656-784 39-177 (194)
243 PF08662 eIF2A: Eukaryotic tra 99.4 3.3E-11 7.2E-16 121.6 20.4 156 553-711 9-186 (194)
244 KOG3881 Uncharacterized conser 99.4 3.6E-11 7.8E-16 126.5 20.7 234 548-784 54-318 (412)
245 KOG0974 WD-repeat protein WDR6 99.4 1.9E-11 4.1E-16 141.9 20.4 265 506-784 6-286 (967)
246 KOG1409 Uncharacterized conser 99.4 3.3E-11 7.2E-16 124.7 18.9 249 495-746 12-271 (404)
247 PRK00178 tolB translocation pr 99.3 3.1E-10 6.7E-15 129.1 26.9 219 502-726 193-428 (430)
248 PRK04792 tolB translocation pr 99.3 3.2E-10 6.9E-15 129.4 25.3 218 503-726 213-447 (448)
249 PRK01029 tolB translocation pr 99.3 6.8E-10 1.5E-14 125.8 27.5 236 529-768 165-426 (428)
250 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.8E-09 8.3E-14 114.9 32.0 254 529-784 27-328 (352)
251 TIGR02800 propeller_TolB tol-p 99.3 6.7E-10 1.5E-14 125.6 27.3 203 571-778 170-386 (417)
252 COG2706 3-carboxymuconate cycl 99.3 1.7E-08 3.8E-13 106.2 34.7 260 506-765 38-345 (346)
253 COG5354 Uncharacterized protei 99.3 2.3E-09 5E-14 116.3 27.7 272 507-784 71-393 (561)
254 KOG2315 Predicted translation 99.3 6.1E-10 1.3E-14 122.1 23.4 247 511-767 129-411 (566)
255 KOG4190 Uncharacterized conser 99.2 3.7E-11 8E-16 130.0 11.9 279 499-782 727-1032(1034)
256 KOG2041 WD40 repeat protein [G 99.2 8.5E-10 1.9E-14 122.8 22.5 273 506-781 13-332 (1189)
257 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.6E-08 5.7E-13 108.4 33.3 231 515-752 53-337 (352)
258 PRK01029 tolB translocation pr 99.2 3.5E-09 7.7E-14 120.0 27.7 211 571-783 165-400 (428)
259 TIGR03300 assembly_YfgL outer 99.2 1.6E-08 3.4E-13 113.0 32.6 253 518-784 104-377 (377)
260 COG2706 3-carboxymuconate cycl 99.2 3.6E-08 7.8E-13 103.9 31.5 256 528-783 15-318 (346)
261 KOG4547 WD40 repeat-containing 99.2 2.8E-09 6E-14 117.9 23.4 185 517-704 3-221 (541)
262 KOG1354 Serine/threonine prote 99.2 1.4E-09 3E-14 112.8 18.9 256 438-705 25-361 (433)
263 COG5354 Uncharacterized protei 99.2 4.1E-09 8.9E-14 114.4 23.3 270 506-784 31-346 (561)
264 KOG0309 Conserved WD40 repeat- 99.2 2.2E-10 4.7E-15 128.1 13.3 277 506-784 23-337 (1081)
265 KOG4547 WD40 repeat-containing 99.2 3.1E-09 6.7E-14 117.5 21.6 186 559-746 3-221 (541)
266 KOG2314 Translation initiation 99.1 8.4E-09 1.8E-13 112.7 23.5 278 494-779 238-560 (698)
267 KOG2314 Translation initiation 99.1 1.7E-08 3.7E-13 110.4 24.8 269 510-784 213-523 (698)
268 TIGR03300 assembly_YfgL outer 99.1 2.9E-08 6.3E-13 110.9 27.5 251 519-784 65-336 (377)
269 COG4946 Uncharacterized protei 99.1 1.2E-07 2.5E-12 102.2 29.9 273 493-775 214-507 (668)
270 PLN02919 haloacid dehalogenase 99.1 9.5E-08 2.1E-12 119.0 34.0 236 511-749 571-892 (1057)
271 KOG0280 Uncharacterized conser 99.1 2.8E-09 6E-14 108.7 16.6 197 509-705 123-335 (339)
272 PLN02919 haloacid dehalogenase 99.1 1E-07 2.2E-12 118.9 32.1 230 553-784 571-886 (1057)
273 KOG1409 Uncharacterized conser 99.0 5.4E-09 1.2E-13 108.6 16.4 242 539-784 14-268 (404)
274 KOG1064 RAVE (regulator of V-A 99.0 1.4E-09 3.1E-14 131.5 12.9 195 503-712 2204-2407(2439)
275 COG5170 CDC55 Serine/threonine 99.0 5.6E-09 1.2E-13 106.9 15.2 235 507-743 26-365 (460)
276 KOG0280 Uncharacterized conser 99.0 2.2E-08 4.8E-13 102.2 19.3 237 507-744 69-332 (339)
277 KOG0974 WD-repeat protein WDR6 99.0 4.4E-09 9.5E-14 122.6 15.7 147 513-663 139-289 (967)
278 PRK04043 tolB translocation pr 99.0 2.7E-07 5.9E-12 104.2 29.8 225 529-762 169-417 (419)
279 KOG2041 WD40 repeat protein [G 99.0 2.9E-08 6.2E-13 110.9 20.7 266 450-731 25-324 (1189)
280 PF04762 IKI3: IKI3 family; I 99.0 4.9E-07 1.1E-11 110.8 33.4 277 505-784 73-454 (928)
281 KOG1832 HIV-1 Vpr-binding prot 99.0 3.8E-10 8.3E-15 128.0 5.5 262 496-774 1090-1377(1516)
282 PRK04043 tolB translocation pr 99.0 2.7E-07 5.9E-12 104.2 28.0 199 571-777 169-388 (419)
283 KOG1912 WD40 repeat protein [G 98.9 2.4E-07 5.3E-12 104.8 25.0 207 495-702 43-303 (1062)
284 KOG1064 RAVE (regulator of V-A 98.9 5.6E-09 1.2E-13 126.5 12.3 241 521-779 2182-2439(2439)
285 PF08450 SGL: SMP-30/Gluconola 98.9 3.9E-06 8.4E-11 88.0 32.4 215 512-734 4-244 (246)
286 COG4946 Uncharacterized protei 98.9 5.1E-07 1.1E-11 97.4 24.6 269 505-784 357-652 (668)
287 KOG4190 Uncharacterized conser 98.9 7.4E-09 1.6E-13 112.5 9.7 204 542-749 728-952 (1034)
288 KOG0882 Cyclophilin-related pe 98.9 2.2E-08 4.7E-13 107.2 12.9 246 506-754 8-314 (558)
289 PF04762 IKI3: IKI3 family; I 98.9 1.3E-06 2.7E-11 107.3 29.9 230 548-783 74-376 (928)
290 PF13360 PQQ_2: PQQ-like domai 98.8 1.8E-06 3.8E-11 89.5 26.6 215 527-750 1-235 (238)
291 KOG4532 WD40-like repeat conta 98.8 7.2E-07 1.6E-11 90.3 21.6 243 528-777 51-323 (344)
292 KOG1912 WD40 repeat protein [G 98.8 3.4E-07 7.4E-12 103.7 21.3 234 510-783 18-301 (1062)
293 KOG3914 WD repeat protein WDR4 98.8 1.2E-07 2.5E-12 100.9 15.3 131 499-632 102-232 (390)
294 PRK11138 outer membrane biogen 98.8 3.7E-06 8E-11 94.6 28.6 254 519-784 120-392 (394)
295 KOG4532 WD40-like repeat conta 98.8 9.9E-07 2.1E-11 89.3 20.7 229 518-749 83-335 (344)
296 KOG0309 Conserved WD40 repeat- 98.7 2.5E-08 5.4E-13 112.0 8.7 204 501-704 108-340 (1081)
297 PF07433 DUF1513: Protein of u 98.7 1.2E-05 2.5E-10 85.2 28.0 240 509-776 6-276 (305)
298 PRK11138 outer membrane biogen 98.7 3.8E-06 8.3E-11 94.5 25.8 253 519-784 69-351 (394)
299 PF08450 SGL: SMP-30/Gluconola 98.7 3.2E-05 6.9E-10 81.0 30.6 212 553-774 3-243 (246)
300 PF15492 Nbas_N: Neuroblastoma 98.7 7.3E-06 1.6E-10 84.4 23.3 197 509-714 45-270 (282)
301 KOG1645 RING-finger-containing 98.6 9.8E-07 2.1E-11 93.8 17.3 244 497-745 183-461 (463)
302 KOG0882 Cyclophilin-related pe 98.6 5.2E-07 1.1E-11 96.9 14.1 236 450-711 19-313 (558)
303 PF15492 Nbas_N: Neuroblastoma 98.6 1.5E-05 3.2E-10 82.1 24.1 219 512-750 2-264 (282)
304 KOG3914 WD repeat protein WDR4 98.6 9.6E-07 2.1E-11 94.1 16.0 157 510-671 65-232 (390)
305 KOG4714 Nucleoporin [Nuclear s 98.6 3.8E-07 8.2E-12 91.9 12.0 193 510-704 39-255 (319)
306 KOG1275 PAB-dependent poly(A) 98.6 6.8E-07 1.5E-11 103.1 15.5 263 506-784 53-340 (1118)
307 KOG1645 RING-finger-containing 98.6 5.7E-06 1.2E-10 88.1 21.0 249 531-784 175-459 (463)
308 KOG4714 Nucleoporin [Nuclear s 98.6 6.3E-07 1.4E-11 90.3 12.9 164 499-663 81-255 (319)
309 PF13360 PQQ_2: PQQ-like domai 98.6 1.6E-05 3.6E-10 82.2 23.9 210 569-784 1-228 (238)
310 KOG1832 HIV-1 Vpr-binding prot 98.6 3.6E-08 7.7E-13 112.4 4.0 200 539-750 1091-1296(1516)
311 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00012 2.5E-09 74.4 26.9 256 518-784 62-349 (354)
312 COG5170 CDC55 Serine/threonine 98.5 6.8E-07 1.5E-11 91.9 11.2 230 548-784 25-307 (460)
313 PF08513 LisH: LisH; InterPro 98.5 1E-07 2.2E-12 63.3 3.5 27 10-36 1-27 (27)
314 PF00930 DPPIV_N: Dipeptidyl p 98.5 7.8E-05 1.7E-09 82.6 28.0 257 516-775 1-346 (353)
315 PF04053 Coatomer_WDAD: Coatom 98.5 2E-05 4.3E-10 89.2 22.3 215 548-783 31-259 (443)
316 KOG2695 WD40 repeat protein [G 98.4 3.6E-07 7.8E-12 95.3 7.4 158 512-672 216-386 (425)
317 KOG2066 Vacuolar assembly/sort 98.4 5.7E-06 1.2E-10 94.9 16.8 181 506-703 38-233 (846)
318 KOG1920 IkappaB kinase complex 98.4 4.5E-05 9.8E-10 91.2 24.6 237 507-749 68-326 (1265)
319 KOG2114 Vacuolar assembly/sort 98.4 7E-05 1.5E-09 86.7 24.5 203 509-715 27-256 (933)
320 PF02897 Peptidase_S9_N: Proly 98.3 0.00073 1.6E-08 76.5 31.9 241 510-752 126-411 (414)
321 cd00216 PQQ_DH Dehydrogenases 98.3 0.00022 4.7E-09 82.6 27.3 257 519-784 61-422 (488)
322 PF00400 WD40: WD domain, G-be 98.3 2.6E-06 5.7E-11 61.9 7.1 38 498-535 2-39 (39)
323 PRK02888 nitrous-oxide reducta 98.3 9.2E-05 2E-09 85.1 22.8 222 518-746 140-405 (635)
324 cd00216 PQQ_DH Dehydrogenases 98.3 0.00056 1.2E-08 79.2 29.5 227 520-751 111-430 (488)
325 KOG2114 Vacuolar assembly/sort 98.3 0.00014 3.1E-09 84.3 23.7 201 556-759 30-259 (933)
326 KOG2066 Vacuolar assembly/sort 98.3 2.8E-05 6E-10 89.4 18.0 181 549-746 39-234 (846)
327 PF07433 DUF1513: Protein of u 98.3 0.00021 4.5E-09 75.9 23.1 184 513-700 56-282 (305)
328 KOG2695 WD40 repeat protein [G 98.2 3.7E-06 7.9E-11 87.9 9.2 147 565-715 228-388 (425)
329 KOG3621 WD40 repeat-containing 98.2 0.00018 4E-09 81.9 23.1 268 506-782 32-349 (726)
330 KOG1920 IkappaB kinase complex 98.2 0.00021 4.6E-09 85.7 24.3 230 548-783 67-319 (1265)
331 PF14583 Pectate_lyase22: Olig 98.2 0.00094 2E-08 73.0 27.4 266 514-783 42-378 (386)
332 PF08596 Lgl_C: Lethal giant l 98.2 0.00018 3.9E-09 80.4 22.6 261 509-776 3-326 (395)
333 PRK02888 nitrous-oxide reducta 98.2 0.00029 6.2E-09 81.2 23.9 179 600-784 200-402 (635)
334 PF00400 WD40: WD domain, G-be 98.2 3.6E-06 7.7E-11 61.2 5.4 38 540-577 2-39 (39)
335 KOG3617 WD40 and TPR repeat-co 98.2 3.2E-05 6.9E-10 88.7 15.0 110 510-623 18-131 (1416)
336 COG3391 Uncharacterized conser 98.2 0.0027 5.8E-08 71.2 30.5 249 531-782 13-279 (381)
337 COG0823 TolB Periplasmic compo 98.1 0.00027 5.9E-09 79.7 22.4 185 586-772 186-385 (425)
338 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0016 3.5E-08 66.3 25.0 142 519-664 23-167 (354)
339 KOG1275 PAB-dependent poly(A) 98.1 5.8E-05 1.2E-09 87.7 15.1 190 518-744 146-341 (1118)
340 KOG3617 WD40 and TPR repeat-co 98.0 8.1E-05 1.8E-09 85.5 14.5 259 510-775 62-374 (1416)
341 PF11768 DUF3312: Protein of u 98.0 0.0077 1.7E-07 68.2 29.7 88 696-784 237-327 (545)
342 KOG1008 Uncharacterized conser 98.0 2.9E-06 6.3E-11 94.9 2.8 196 507-703 56-275 (783)
343 PF04053 Coatomer_WDAD: Coatom 98.0 0.00076 1.6E-08 76.4 21.6 225 501-746 26-263 (443)
344 PF06433 Me-amine-dh_H: Methyl 98.0 0.0046 1E-07 66.6 26.0 254 529-784 17-318 (342)
345 COG0823 TolB Periplasmic compo 97.9 0.00085 1.8E-08 75.8 21.3 202 531-737 175-391 (425)
346 PF14583 Pectate_lyase22: Olig 97.9 0.014 3E-07 64.0 28.8 267 446-742 43-378 (386)
347 PF06433 Me-amine-dh_H: Methyl 97.9 0.0085 1.8E-07 64.6 26.4 236 512-753 40-328 (342)
348 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0043 9.3E-08 68.8 25.4 227 507-735 42-347 (353)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.0099 2.2E-07 69.4 29.3 186 519-708 69-338 (527)
350 PF06977 SdiA-regulated: SdiA- 97.9 0.012 2.6E-07 61.6 26.7 198 500-700 14-247 (248)
351 COG3391 Uncharacterized conser 97.9 0.0052 1.1E-07 68.9 25.8 215 509-726 75-309 (381)
352 PF00780 CNH: CNH domain; Int 97.9 0.014 3E-07 62.0 28.1 221 517-752 5-262 (275)
353 PF04841 Vps16_N: Vps16, N-ter 97.8 0.02 4.4E-07 64.7 30.0 203 530-743 62-285 (410)
354 PF11768 DUF3312: Protein of u 97.8 9.9E-05 2.1E-09 83.0 10.7 76 505-582 257-332 (545)
355 PF00780 CNH: CNH domain; Int 97.8 0.0071 1.5E-07 64.3 24.7 212 560-784 6-253 (275)
356 KOG1008 Uncharacterized conser 97.8 1.1E-05 2.5E-10 90.3 3.2 195 550-746 57-276 (783)
357 KOG1897 Damage-specific DNA bi 97.8 0.05 1.1E-06 64.8 31.9 307 450-782 547-938 (1096)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.052 1.1E-06 63.4 32.4 231 519-751 120-496 (527)
359 PF06977 SdiA-regulated: SdiA- 97.7 0.011 2.3E-07 61.9 23.9 194 587-783 16-247 (248)
360 PF08596 Lgl_C: Lethal giant l 97.7 0.0049 1.1E-07 69.0 22.3 204 496-701 75-333 (395)
361 KOG3621 WD40 repeat-containing 97.7 0.0051 1.1E-07 70.5 22.0 138 448-612 42-188 (726)
362 PF03178 CPSF_A: CPSF A subuni 97.6 0.0061 1.3E-07 66.6 20.2 164 616-783 3-199 (321)
363 PRK10115 protease 2; Provision 97.5 0.1 2.2E-06 63.1 31.6 237 509-750 128-399 (686)
364 PF04841 Vps16_N: Vps16, N-ter 97.5 0.026 5.7E-07 63.8 25.0 187 572-769 62-272 (410)
365 KOG4640 Anaphase-promoting com 97.5 0.00037 8E-09 78.6 9.8 96 506-602 19-115 (665)
366 PF03178 CPSF_A: CPSF A subuni 97.5 0.013 2.9E-07 63.9 22.0 205 572-782 3-261 (321)
367 COG3490 Uncharacterized protei 97.5 0.024 5.1E-07 58.9 21.3 247 510-782 70-344 (366)
368 COG3386 Gluconolactonase [Carb 97.5 0.032 6.9E-07 60.4 23.8 214 555-776 30-276 (307)
369 PF02897 Peptidase_S9_N: Proly 97.5 0.038 8.2E-07 62.5 25.7 216 551-769 125-383 (414)
370 PF14727 PHTB1_N: PTHB1 N-term 97.4 0.24 5.2E-06 55.7 30.3 260 519-782 37-356 (418)
371 COG3386 Gluconolactonase [Carb 97.4 0.058 1.3E-06 58.4 24.3 217 514-736 31-276 (307)
372 PRK13616 lipoprotein LpqB; Pro 97.3 0.039 8.4E-07 65.1 22.9 184 592-781 349-563 (591)
373 PF15390 DUF4613: Domain of un 97.2 0.081 1.8E-06 60.1 23.9 116 508-623 57-186 (671)
374 KOG4499 Ca2+-binding protein R 97.2 0.085 1.8E-06 53.5 20.8 203 561-766 27-263 (310)
375 PRK10115 protease 2; Provision 97.2 0.31 6.6E-06 58.9 30.0 198 550-752 127-353 (686)
376 PRK13616 lipoprotein LpqB; Pro 97.2 0.029 6.3E-07 66.2 20.5 206 528-741 328-564 (591)
377 KOG2395 Protein involved in va 97.1 0.012 2.7E-07 65.5 15.3 133 643-777 344-492 (644)
378 PF05096 Glu_cyclase_2: Glutam 97.1 0.23 4.9E-06 52.1 23.9 181 551-736 46-251 (264)
379 smart00320 WD40 WD40 repeats. 97.1 0.0014 3.1E-08 45.0 5.6 38 498-535 3-40 (40)
380 smart00667 LisH Lissencephaly 97.0 0.00087 1.9E-08 46.9 4.0 31 9-39 3-33 (34)
381 PF08553 VID27: VID27 cytoplas 97.0 0.014 3E-07 70.0 15.5 125 652-777 502-639 (794)
382 PF08553 VID27: VID27 cytoplas 96.9 0.037 8E-07 66.4 18.3 141 518-661 492-646 (794)
383 smart00320 WD40 WD40 repeats. 96.9 0.0024 5.3E-08 43.8 5.2 38 540-577 3-40 (40)
384 PF05694 SBP56: 56kDa selenium 96.8 1.1 2.4E-05 50.0 27.3 216 518-735 86-393 (461)
385 KOG4499 Ca2+-binding protein R 96.8 0.16 3.4E-06 51.6 18.9 175 521-726 73-264 (310)
386 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.043 9.3E-07 49.6 13.6 101 510-618 2-109 (111)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.32 6.9E-06 54.7 20.4 81 667-750 300-403 (415)
388 KOG4640 Anaphase-promoting com 96.4 0.015 3.2E-07 66.2 9.8 92 674-766 20-115 (665)
389 PF10647 Gmad1: Lipoprotein Lp 96.4 1.1 2.5E-05 47.1 23.8 155 594-748 25-200 (253)
390 COG3490 Uncharacterized protei 96.4 0.27 5.7E-06 51.4 17.9 168 601-776 44-245 (366)
391 PHA02713 hypothetical protein; 96.4 0.29 6.2E-06 57.8 20.8 214 530-750 273-538 (557)
392 PF07995 GSDH: Glucose / Sorbo 96.3 1.7 3.6E-05 47.8 25.3 72 709-781 247-330 (331)
393 KOG1897 Damage-specific DNA bi 96.3 2.2 4.8E-05 51.6 26.9 242 530-775 471-733 (1096)
394 PRK13684 Ycf48-like protein; P 96.3 2.4 5.2E-05 46.6 31.5 266 507-784 45-329 (334)
395 KOG2079 Vacuolar assembly/sort 96.2 0.044 9.5E-07 65.8 12.7 97 518-616 98-198 (1206)
396 KOG4441 Proteins containing BT 96.2 0.35 7.5E-06 57.1 20.0 226 518-750 284-551 (571)
397 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.26 5.5E-06 44.6 14.5 99 595-697 2-108 (111)
398 KOG2444 WD40 repeat protein [G 96.1 0.0078 1.7E-07 60.7 5.3 137 563-703 32-177 (238)
399 PF14870 PSII_BNR: Photosynthe 96.1 2.6 5.6E-05 45.6 31.2 267 507-783 16-301 (302)
400 TIGR03118 PEPCTERM_chp_1 conse 96.0 2.7 5.8E-05 44.8 23.4 215 510-725 25-307 (336)
401 PF05096 Glu_cyclase_2: Glutam 96.0 2.5 5.5E-05 44.4 24.8 175 595-775 47-249 (264)
402 KOG4441 Proteins containing BT 95.9 0.4 8.7E-06 56.6 19.2 214 561-779 285-534 (571)
403 PHA02713 hypothetical protein; 95.9 0.6 1.3E-05 55.1 20.7 204 572-783 273-530 (557)
404 TIGR03074 PQQ_membr_DH membran 95.9 1.5 3.3E-05 53.3 24.3 224 519-750 194-482 (764)
405 KOG1916 Nuclear protein, conta 95.7 0.013 2.8E-07 68.8 5.5 173 503-708 128-328 (1283)
406 COG1520 FOG: WD40-like repeat 95.7 4.5 9.7E-05 45.0 29.2 192 518-714 68-279 (370)
407 KOG2395 Protein involved in va 95.7 0.24 5.2E-06 55.6 14.9 141 603-744 344-499 (644)
408 COG3204 Uncharacterized protei 95.7 1.8 4E-05 45.7 20.5 194 546-742 82-309 (316)
409 TIGR02604 Piru_Ver_Nterm putat 95.6 3 6.6E-05 46.4 23.7 141 550-694 14-203 (367)
410 PF05694 SBP56: 56kDa selenium 95.5 1.8 3.9E-05 48.4 20.4 181 604-784 87-340 (461)
411 COG5276 Uncharacterized conser 95.4 4.3 9.3E-05 42.9 30.6 266 507-784 86-367 (370)
412 COG3204 Uncharacterized protei 95.4 2 4.4E-05 45.4 19.6 191 503-695 81-304 (316)
413 PF10214 Rrn6: RNA polymerase 95.4 5.2 0.00011 49.2 26.7 174 547-746 77-277 (765)
414 PF10647 Gmad1: Lipoprotein Lp 95.2 4.2 9.2E-05 42.8 22.0 138 551-693 25-184 (253)
415 KOG3630 Nuclear pore complex, 95.2 0.18 3.8E-06 61.2 12.3 143 550-693 101-262 (1405)
416 COG5276 Uncharacterized conser 95.0 5.6 0.00012 42.1 25.9 227 510-745 131-369 (370)
417 KOG2444 WD40 repeat protein [G 95.0 0.044 9.6E-07 55.4 5.8 136 647-784 33-175 (238)
418 KOG2079 Vacuolar assembly/sort 95.0 0.42 9.2E-06 57.8 14.6 71 506-578 129-202 (1206)
419 PF10168 Nup88: Nuclear pore c 95.0 5.1 0.00011 48.5 24.1 94 550-664 85-181 (717)
420 PHA03098 kelch-like protein; P 95.0 0.92 2E-05 53.2 17.9 154 605-762 343-528 (534)
421 PF10433 MMS1_N: Mono-function 94.9 9 0.0002 44.6 25.6 244 516-766 219-503 (504)
422 TIGR02604 Piru_Ver_Nterm putat 94.8 0.79 1.7E-05 51.1 16.1 107 669-777 66-204 (367)
423 COG3292 Predicted periplasmic 94.8 2.6 5.7E-05 48.1 19.5 267 506-782 163-443 (671)
424 PF12894 Apc4_WD40: Anaphase-p 94.7 0.092 2E-06 39.9 5.6 35 506-541 10-44 (47)
425 COG4257 Vgb Streptogramin lyas 94.7 5.3 0.00011 41.9 19.8 205 551-769 63-288 (353)
426 KOG2280 Vacuolar assembly/sort 94.7 4.1 8.8E-05 48.1 21.1 195 528-727 63-271 (829)
427 PF02333 Phytase: Phytase; In 94.6 9.3 0.0002 42.5 24.0 191 518-711 67-299 (381)
428 PLN00033 photosystem II stabil 94.6 9.9 0.00022 42.8 34.8 107 673-783 279-396 (398)
429 PRK13684 Ycf48-like protein; P 94.6 5.8 0.00013 43.6 21.9 147 549-701 172-329 (334)
430 PF14727 PHTB1_N: PTHB1 N-term 94.5 10 0.00023 42.8 27.2 142 560-702 36-203 (418)
431 PHA03098 kelch-like protein; P 94.5 1.3 2.8E-05 52.0 17.6 183 518-706 294-514 (534)
432 COG3823 Glutamine cyclotransfe 94.5 1.2 2.6E-05 44.6 14.2 174 560-735 55-248 (262)
433 PF12234 Rav1p_C: RAVE protein 94.5 1.2 2.6E-05 52.6 16.7 125 495-622 17-155 (631)
434 PF10168 Nup88: Nuclear pore c 94.5 3.2 6.9E-05 50.2 20.8 85 498-583 75-183 (717)
435 KOG2377 Uncharacterized conser 94.3 4 8.6E-05 45.5 19.0 117 506-624 65-186 (657)
436 PF12234 Rav1p_C: RAVE protein 94.3 1.1 2.4E-05 52.8 15.9 109 674-784 29-154 (631)
437 TIGR03074 PQQ_membr_DH membran 94.2 5.3 0.00012 48.7 22.2 171 607-784 262-475 (764)
438 smart00036 CNH Domain found in 94.2 10 0.00022 41.1 30.0 229 518-755 12-280 (302)
439 PF14870 PSII_BNR: Photosynthe 94.1 10 0.00022 40.9 30.4 222 548-780 15-255 (302)
440 KOG1916 Nuclear protein, conta 94.1 0.077 1.7E-06 62.6 5.8 118 510-628 186-328 (1283)
441 PF15390 DUF4613: Domain of un 94.0 2.9 6.3E-05 48.0 17.7 144 550-704 20-187 (671)
442 PLN02153 epithiospecifier prot 93.9 8.5 0.00019 42.2 21.5 83 696-778 218-325 (341)
443 KOG3630 Nuclear pore complex, 93.1 0.69 1.5E-05 56.4 11.6 141 634-774 102-261 (1405)
444 PF12894 Apc4_WD40: Anaphase-p 92.7 0.31 6.8E-06 37.1 5.4 31 549-579 11-41 (47)
445 KOG1983 Tomosyn and related SN 92.7 3.2 7E-05 52.1 17.2 228 507-749 35-268 (993)
446 PF03022 MRJP: Major royal jel 92.6 16 0.00035 39.2 20.5 159 616-774 35-253 (287)
447 PF10395 Utp8: Utp8 family; I 92.5 28 0.00061 41.4 23.8 120 630-750 127-264 (670)
448 PHA02790 Kelch-like protein; P 92.4 5.8 0.00013 45.9 18.0 141 518-665 271-426 (480)
449 PF14781 BBS2_N: Ciliary BBSom 92.3 3.8 8.3E-05 38.4 12.9 110 639-750 5-130 (136)
450 PF10433 MMS1_N: Mono-function 92.1 26 0.00056 40.8 23.1 221 558-783 219-473 (504)
451 PHA02790 Kelch-like protein; P 91.9 8.7 0.00019 44.5 18.7 139 605-749 319-474 (480)
452 PF14761 HPS3_N: Hermansky-Pud 91.7 11 0.00024 38.3 16.5 101 520-623 29-163 (215)
453 PF10395 Utp8: Utp8 family; I 91.6 21 0.00045 42.4 21.0 163 548-712 128-314 (670)
454 KOG4369 RTK signaling protein 91.2 0.072 1.6E-06 64.0 0.6 70 181-258 1754-1823(2131)
455 COG4257 Vgb Streptogramin lyas 90.9 24 0.00051 37.2 22.8 236 509-753 63-313 (353)
456 TIGR03548 mutarot_permut cycli 90.8 27 0.00058 37.9 20.4 100 605-706 73-197 (323)
457 KOG1898 Splicing factor 3b, su 90.7 51 0.0011 40.8 30.3 99 681-782 940-1044(1205)
458 COG5290 IkappaB kinase complex 90.5 9.2 0.0002 45.4 16.3 103 637-740 251-361 (1243)
459 PLN02153 epithiospecifier prot 90.3 32 0.00069 37.7 22.0 63 518-582 32-112 (341)
460 KOG4460 Nuclear pore complex, 90.3 2.6 5.7E-05 47.6 11.4 27 634-660 105-131 (741)
461 KOG2377 Uncharacterized conser 90.2 37 0.00079 38.2 20.2 148 513-664 28-187 (657)
462 KOG2280 Vacuolar assembly/sort 90.1 23 0.0005 42.1 19.1 173 571-750 64-251 (829)
463 COG1506 DAP2 Dipeptidyl aminop 89.8 52 0.0011 39.5 23.1 144 545-693 55-234 (620)
464 COG5167 VID27 Protein involved 89.8 12 0.00026 42.4 15.9 140 560-703 478-632 (776)
465 PRK05560 DNA gyrase subunit A; 89.8 49 0.0011 41.0 23.2 223 558-783 495-769 (805)
466 PRK13979 DNA topoisomerase IV 89.8 65 0.0014 40.5 28.1 260 509-781 553-871 (957)
467 TIGR03548 mutarot_permut cycli 89.7 31 0.00067 37.4 19.7 107 518-627 72-198 (323)
468 PF08801 Nucleoporin_N: Nup133 89.6 27 0.00058 39.7 19.7 31 716-746 190-220 (422)
469 KOG2247 WD40 repeat-containing 89.5 0.04 8.7E-07 61.1 -3.1 139 636-778 38-180 (615)
470 PF07569 Hira: TUP1-like enhan 89.5 2.7 5.9E-05 43.2 10.4 71 638-708 16-100 (219)
471 PLN02193 nitrile-specifier pro 89.4 46 0.001 38.4 22.7 187 560-751 175-416 (470)
472 PLN00033 photosystem II stabil 89.4 42 0.00091 37.8 25.6 143 595-742 241-396 (398)
473 PRK14131 N-acetylneuraminic ac 89.3 41 0.00089 37.5 22.6 63 518-582 38-117 (376)
474 smart00036 CNH Domain found in 89.1 37 0.0008 36.7 24.5 203 506-713 41-280 (302)
475 COG5167 VID27 Protein involved 88.9 6.8 0.00015 44.3 13.2 134 641-777 476-624 (776)
476 KOG4460 Nuclear pore complex, 88.8 10 0.00023 43.0 14.6 100 550-670 104-206 (741)
477 KOG3598 Thyroid hormone recept 88.6 0.058 1.3E-06 66.1 -2.9 13 154-166 2016-2028(2220)
478 KOG2247 WD40 repeat-containing 88.6 0.18 3.9E-06 56.2 1.0 145 550-697 35-182 (615)
479 COG3292 Predicted periplasmic 88.5 54 0.0012 38.0 20.8 258 508-773 206-480 (671)
480 PF07569 Hira: TUP1-like enhan 88.0 3 6.6E-05 42.9 9.5 62 722-784 17-93 (219)
481 TIGR03606 non_repeat_PQQ dehyd 87.9 56 0.0012 37.4 31.6 60 502-561 24-90 (454)
482 PF08728 CRT10: CRT10; InterP 87.8 5.6 0.00012 47.5 12.6 113 509-622 102-245 (717)
483 KOG1896 mRNA cleavage and poly 87.3 93 0.002 39.3 25.4 136 645-783 1047-1210(1366)
484 COG1520 FOG: WD40-like repeat 87.2 53 0.0012 36.4 29.0 186 560-750 68-273 (370)
485 PF14655 RAB3GAP2_N: Rab3 GTPa 87.0 7.2 0.00016 44.0 12.5 90 493-582 293-401 (415)
486 PF14781 BBS2_N: Ciliary BBSom 87.0 25 0.00053 33.1 13.7 110 511-625 2-127 (136)
487 PF13449 Phytase-like: Esteras 86.9 36 0.00078 37.2 17.8 96 677-773 87-231 (326)
488 PF14761 HPS3_N: Hermansky-Pud 86.8 31 0.00067 35.2 15.5 130 562-705 29-165 (215)
489 TIGR03547 muta_rot_YjhT mutatr 86.7 36 0.00078 37.3 17.9 183 512-695 57-331 (346)
490 PF10214 Rrn6: RNA polymerase 86.4 93 0.002 38.4 28.2 155 505-663 77-277 (765)
491 COG3823 Glutamine cyclotransfe 86.1 17 0.00037 36.7 12.9 165 606-774 57-247 (262)
492 KOG1898 Splicing factor 3b, su 86.0 45 0.00097 41.3 18.6 127 615-745 912-1048(1205)
493 PF07250 Glyoxal_oxid_N: Glyox 86.0 12 0.00026 39.1 12.6 126 656-781 48-194 (243)
494 PF10313 DUF2415: Uncharacteri 85.7 2.8 6.1E-05 31.2 5.5 31 508-538 1-34 (43)
495 PRK14131 N-acetylneuraminic ac 85.1 61 0.0013 36.1 18.9 39 739-777 314-353 (376)
496 PLN02193 nitrile-specifier pro 85.1 80 0.0017 36.5 22.1 146 518-666 175-355 (470)
497 PF08728 CRT10: CRT10; InterP 84.7 19 0.00042 43.1 14.9 69 716-784 164-244 (717)
498 KOG4659 Uncharacterized conser 84.7 70 0.0015 40.6 19.4 249 511-781 368-686 (1899)
499 PF12657 TFIIIC_delta: Transcr 84.7 4.5 9.7E-05 39.9 8.5 28 757-784 86-119 (173)
500 COG1770 PtrB Protease II [Amin 83.6 1E+02 0.0022 36.6 26.9 246 509-756 130-407 (682)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-44 Score=368.56 Aligned_cols=320 Identities=23% Similarity=0.383 Sum_probs=280.7
Q ss_pred CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260 435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH 514 (784)
Q Consensus 435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~ 514 (784)
.|++..+-+..|.++..+++ +||-|.++++|+.... ....+.++|...|.|++
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~-tGsGD~TvR~WD~~Te--------------------------Tp~~t~KgH~~WVlcva 164 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLV-TGSGDTTVRLWDLDTE--------------------------TPLFTCKGHKNWVLCVA 164 (480)
T ss_pred CCCCCcEEEEEecCCCceEE-ecCCCceEEeeccCCC--------------------------CcceeecCCccEEEEEE
Confidence 34555566778888666665 6999999999966221 24567789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcee-eecCCCCCCeEEEEEcc-----CCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260 515 FSSDGKLLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP-----NSSQLATASVDKSVRLWDAANPNFCSQAY 588 (784)
Q Consensus 515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~-~~l~~h~~~It~i~fsp-----dg~~Latgs~Dg~I~IWdl~~~~~~~~~~ 588 (784)
|+|||+.||+|+.||.|++||.++++.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+. ++..+
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~l 243 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTL 243 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEe
Confidence 9999999999999999999999987765 57889999999999987 56799999999999999998766 88889
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEE-----------EecCCC---------
Q 047260 589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVR-----------FQPRIG--------- 645 (784)
Q Consensus 589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~-----------fsp~~~--------- 645 (784)
.+|+.+|+|+.|--+ .++++++.|++|++|+...+.+.+.+++ .|+.++ |.|.+.
T Consensus 244 sgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred ccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 999999999999744 4999999999999999988777666654 344444 334343
Q ss_pred ----------------EEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce
Q 047260 646 ----------------QLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC 707 (784)
Q Consensus 646 ----------------~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~ 707 (784)
.+++|+.|.++.+|+.... +++....+|...|+.+.|+||+++|++++-| .|++||.++|+.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 4999999999999997654 5888889999999999999999999999955 999999999999
Q ss_pred EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.+|.+|-..|+.++|+.|.+.|++|+.|.++++||+++.+.. .+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999998877 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-42 Score=354.93 Aligned_cols=287 Identities=23% Similarity=0.383 Sum_probs=263.8
Q ss_pred eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
+.+-..+.+|.+.|.|+.|+|+|..||+|+.|.++++||+.+..+..+.++|...|.||+|+|||+.||+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPK----KTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~----~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~ 649 (784)
|.+++....+.+.+|...|++++|.|- +..++++++.||.|+|||+..+.++.... ..|+|++|--+ ++|++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEe
Confidence 999999899999999999999999873 34489999999999999999988877655 56888888654 68999
Q ss_pred EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe
Q 047260 650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWD-----------TNGD-------------------------YLASVS 693 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s-----------pdg~-------------------------~Lasgs 693 (784)
++.|++|++|+...|++++.+++|...|+.++++ |.++ .|++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999876 2233 499999
Q ss_pred CC-eEEEEeCCC-CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCE
Q 047260 694 QN-LVKVWSMAS-GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGM 770 (784)
Q Consensus 694 dd-~I~IwDl~t-~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~ 770 (784)
|| ++.+|+... .+++....+|...|+.+.|+||+++|++++-|..|++||.++++.+ .+.+|-+.|..++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 98 999999765 4688899999999999999999999999999999999999999988 77889999999999999999
Q ss_pred EEEEECCCcEEEeC
Q 047260 771 VASASHDSSVKLWK 784 (784)
Q Consensus 771 LaSgs~DG~V~IWd 784 (784)
|++|+.|.+++|||
T Consensus 424 lVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWD 437 (480)
T ss_pred EEEcCCCceEEEEE
Confidence 99999999999997
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-40 Score=342.98 Aligned_cols=279 Identities=24% Similarity=0.406 Sum_probs=262.8
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCC
Q 047260 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~ 581 (784)
-+-+.+|..+.|+.|++.||||+.+|.++||+..+...+.++.+|...|.++.|+|. +..+|||+.||+|++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 456788999999999999999999999999999999999999999999999999995 668999999999999999986
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
. .+..+.+|...|..++|+|+|. +|.+++.|.+-++||+++...+.. +..+|.+++|+++|..+++|+.|..-+|
T Consensus 252 ~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 252 T-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred c-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 5 7788999999999999999998 888999999999999998776544 4467899999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec-CCCEEEEEECC
Q 047260 659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP-SYSTLLVVGGI 736 (784)
Q Consensus 659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp-dg~~L~s~s~d 736 (784)
||+++++++..+.+|...|.+|.|+|+|..|++|+.| +++|||++...++.++..|.+-|..+.|+| .|.+|++++.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999999999999999999965 999999999999999999999999999998 77889999999
Q ss_pred CeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 737 SSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 737 g~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.++++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999988 7889999999999999999999999999999994
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=309.51 Aligned_cols=289 Identities=18% Similarity=0.320 Sum_probs=266.1
Q ss_pred CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260 494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV 573 (784)
Q Consensus 494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I 573 (784)
...+...++|++|.++|.++.|++|.++|++++.||++.|||.-+...+..++-....|..++|+|.++++|+|+-|..+
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 35566778999999999999999999999999999999999999988888888889999999999999999999999999
Q ss_pred EEEcCCCC--c---ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEec-CC
Q 047260 574 RLWDAANP--N---FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQP-RI 644 (784)
Q Consensus 574 ~IWdl~~~--~---~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp-~~ 644 (784)
.||++.+. + ...+.+.+|.+.+.|+.|.+|+ .|++++.|.++.+||++++..+..+. +.|.++.+.| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999854 2 3566788999999999999865 58889999999999999998887766 5688899999 89
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC--CCceEEE
Q 047260 645 GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN--GNQFHSC 721 (784)
Q Consensus 645 ~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~--~~~I~sl 721 (784)
+.+++|+.|+..++||++.+.++..|.+|...|++|+|.|+|.-|++|+|| +.++||++....+..+... ...|+++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 999999999999999999999999999999999999999999999999988 9999999999888877643 4679999
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 722 VFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+|+..|++|++|..|.++.+||.-.++.. .+.+|+.+|++|..+|||..|+||++|..||||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999998888777 8889999999999999999999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=331.60 Aligned_cols=279 Identities=23% Similarity=0.358 Sum_probs=254.0
Q ss_pred CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
+....++...|..++..++ +|||+|.+++|.+... ..+.+|++|.+.|.++.|
T Consensus 173 gd~rPis~~~fS~ds~~la-T~swsG~~kvW~~~~~--------------------------~~~~~l~gH~~~v~~~~f 225 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLA-TGSWSGLVKVWSVPQC--------------------------NLLQTLRGHTSRVGAAVF 225 (459)
T ss_pred cCCCcceeeEeecCCCeEE-EeecCCceeEeecCCc--------------------------ceeEEEeccccceeeEEE
Confidence 3334455556666666555 7999999999966322 467889999999999999
Q ss_pred cCC--CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260 516 SSD--GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS 593 (784)
Q Consensus 516 spd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~ 593 (784)
+|. +..||||+.||+|++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||++++. ......||..
T Consensus 226 hP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~ 304 (459)
T KOG0272|consen 226 HPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSK 304 (459)
T ss_pred ccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-hhHhhccccc
Confidence 996 6689999999999999999999999999999999999999999999999999999999999976 5556789999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
.|.+|+|+++|. ++++|+.|..-+|||++++.++..+.+ .|..|.|+|+|-.|++|+.|++++|||++..+.+..+
T Consensus 305 ~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 305 GVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred ccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence 999999999998 999999999999999999999988774 5788999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260 671 QGHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 671 ~~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd 743 (784)
.+|...|+.|+|+| .|.+|++++-| +++||..+++.+++.+.+|.+.|.+|.+++++.+|++++.|.++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999998 78899999955 999999999999999999999999999999999999999999999995
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=289.04 Aligned_cols=283 Identities=20% Similarity=0.365 Sum_probs=248.1
Q ss_pred eEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260 498 CEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMD-----TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK 571 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg 571 (784)
....++++|++.|+.++..+. ...|++++.|.+|.+|++. .|..++.+++|...|..+..++||.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 355778999999999999986 5588999999999999875 4778899999999999999999999999999999
Q ss_pred eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecC--CC
Q 047260 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPR--IG 645 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~--~~ 645 (784)
++++||+.+++ ....|.+|...|.+++|+++.. .+++|+.|.+|++|++.......... +-|.|++|+|. ..
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999985 7888999999999999999977 78899999999999998766555544 45899999998 67
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260 646 QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724 (784)
Q Consensus 646 ~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs 724 (784)
.|+.++.|++|++||+++.+....+.+|.+.++.+.++|||.++++|+.+ .+.+||++.++++..+ .+...|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence 88899999999999999999999999999999999999999999999966 9999999999998877 456899999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCceEE-----eccc-----CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 725 PSYSTLLVVGGISSLELWNMAENKSMT-----IAAH-----ENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 725 pdg~~L~s~s~dg~I~Iwdl~~~~~~~-----~~~h-----~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+.-.|+.+. +..|+|||+.++.++. ..+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 243 pnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 243 PNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred CCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9975555544 4569999999987761 1122 33467789999999999999999999994
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=294.75 Aligned_cols=283 Identities=21% Similarity=0.402 Sum_probs=259.0
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNM-DTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
.+..+.+|++.|.++.|+|+|.+||+|+.|..|.+|++ ...+....+++|++.|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 44557889999999999999999999999999999995 45677788899999999999999999999999999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCc
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
+++++ ..+.+.+|..-|.++....-+..++++++.|+++++||++...++..+ +-.++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccce-eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99988 778889999999999977778889999999999999999998888888 577899999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC----ceEEEeccCC----CceEEEEEecC
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG----ECIQELSSNG----NQFHSCVFHPS 726 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~----~~i~~l~~~~----~~I~sl~fspd 726 (784)
|++||++.....+.+.+|.+.|+.+..+++|.++.+-+-+ +|++||++.. +++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999998854 9999999853 5677777653 34578999999
Q ss_pred CCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 727 YSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 727 g~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
+..+-+++.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|.+
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999886655 88999999999999999999999999999876
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=299.65 Aligned_cols=287 Identities=22% Similarity=0.365 Sum_probs=265.1
Q ss_pred cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~ 574 (784)
.+++..+.+.+|.+.|.|+++.|-..+|++|+.|++|+|||+.++++..++.+|...|..+++++...|+++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEE
Q 047260 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAA 651 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s 651 (784)
.||++..+ +++.+.+|-+.|.|++.+|.-+ ++++|+.|..+++||+++...+..+. .+|..+.+.|....+++++
T Consensus 219 CwDLe~nk-vIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNK-VIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhh-hHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999866 7888999999999999999865 88999999999999999877776655 6788899999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260 652 SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 652 ~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~ 731 (784)
.|++|++||++.++....+..|+..|.+++.+|....+++++.|.|+-|++..|+.+..+.+|...|+++....|+ +++
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876 688
Q ss_pred EEECCCeEEEEECCCCceEEe---------cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 732 VVGGISSLELWNMAENKSMTI---------AAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 732 s~s~dg~I~Iwdl~~~~~~~~---------~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+|++.|.|.+||.+++..... ...+..|.+.+|...+..|++|..|.+|++|+
T Consensus 376 ~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 999999999999999876521 12355789999999999999999999999995
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2e-33 Score=292.82 Aligned_cols=282 Identities=28% Similarity=0.546 Sum_probs=252.3
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~ 580 (784)
..+++|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEE
Q 047260 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
.+ ....+..|...|.++.|++++. ++++++.++.|++||+++.+....+. ..+.++.|+|++..+++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 65 5566678888999999999854 77777789999999999766655543 5689999999988777777799999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260 658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d 736 (784)
+||+++++.+..+..|...|.+++|+|+++.+++++ ++.|++||++.++.+..+..+...+.++.|+|++.++++++.+
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 999999998989998999999999999998887777 5599999999999999988888899999999998888887779
Q ss_pred CeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 737 SSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 737 g~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999987765 5668889999999999999999999999999997
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-35 Score=299.95 Aligned_cols=287 Identities=25% Similarity=0.442 Sum_probs=268.5
Q ss_pred eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
+.+...+.+|...|+.+-|+|+-..+++++.|++|++||..+++....+++|...|.+|+|+..|++|++++.|=.+++|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecCCCEEEEEECC
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPRIGQLLAAASD 653 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~~~Ll~~s~D 653 (784)
|..+...+.+...+|...|.+++|-|.+. .+++|+.|..|+.|++.++.|+..+.++ +..++.+.||..+++++.|
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99986668888899999999999999985 8889999999999999999999888754 6778899999999999999
Q ss_pred CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc
Q 047260 654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTN---------------GDYLASVSQN-LVKVWSMASGECIQELSSNGNQ 717 (784)
Q Consensus 654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd---------------g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~ 717 (784)
.+|++|-+.++.+...+..|..+|.|++|.|. +.++++++.| +|++||+.++.|+.++.+|.+.
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999999888899999999999999763 2488888866 9999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|..++|+|.|+||+++.+|++|++||+.+..++ .+..|+..|+++.|+.+..+++||+-|..+++|+
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999999998 7779999999999999999999999999999995
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7e-34 Score=300.06 Aligned_cols=321 Identities=22% Similarity=0.310 Sum_probs=270.0
Q ss_pred cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC
Q 047260 448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH 527 (784)
Q Consensus 448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~ 527 (784)
+..+.++++|+.|...++|...+....-.....++ |+. .+-..--..+..|++++|+.+|.+||+|+.
T Consensus 188 P~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr----h~~--------~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 188 PLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR----HCI--------REGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred chhhhhhhccCCccceeeeeehhhccccchhhhhh----hhh--------hhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 45566788999999999998765110000000000 000 000000113567999999999999999999
Q ss_pred CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcE
Q 047260 528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607 (784)
Q Consensus 528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~l 607 (784)
||.++||+.. +..+.++..|+++|.++.|+.+|+||++++.|+++.+||..++. ....+.-|..+-..|.|-.+. -
T Consensus 256 ~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~~lDVdW~~~~--~ 331 (524)
T KOG0273|consen 256 DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAPALDVDWQSND--E 331 (524)
T ss_pred CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCCccceEEecCc--e
Confidence 9999999976 78888999999999999999999999999999999999998876 667777888887889997665 5
Q ss_pred EEEEeCCCeEEEEeCCCCe---eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 047260 608 FCFCDNDNEIQYWSINPFL---CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDT 684 (784)
Q Consensus 608 l~sgs~dg~I~iwDl~~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp 684 (784)
|++++.|+.|+|+.+.... .+..|.+.|.++.|+|.+..|++++.|++++||........+.+.+|...|..+.|+|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 8899999999999987543 3344668899999999999999999999999999999999999999999999999999
Q ss_pred CCC---------EEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc
Q 047260 685 NGD---------YLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA 754 (784)
Q Consensus 685 dg~---------~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~ 754 (784)
.|. .+++++ +.+|++||+..+.++++|..|..+|++++|+|+++++++|+.||.|.||++.+++.+....
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 653 456655 5599999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 755 HENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 755 h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
..+.|..|+|+.+|.+|..+-.||.|++-|
T Consensus 492 ~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 492 GTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 888899999999999999999999998754
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=275.99 Aligned_cols=287 Identities=22% Similarity=0.339 Sum_probs=248.2
Q ss_pred CCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC
Q 047260 449 DIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD 528 (784)
Q Consensus 449 ~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D 528 (784)
+..-+|.+.++|-+|+.|....+. +.+++...++.|+.+.+.||+++||+++.
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~--------------------------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~- 60 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGI--------------------------CSRTIQHPDSQVNRLEITPDKKDLAAAGN- 60 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCe--------------------------EEEEEecCccceeeEEEcCCcchhhhccC-
Confidence 355677789999999999775443 56667777889999999999999998875
Q ss_pred CeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260 529 RKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 529 g~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 606 (784)
-.|++||+.+.+ ++.++.+|...|+.+.|..+|+.++||++||+++|||++... +.+ ...|.++|.++..+|+..
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR-~~~~~spVn~vvlhpnQt- 137 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQR-NYQHNSPVNTVVLHPNQT- 137 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cch-hccCCCCcceEEecCCcc-
Confidence 569999998765 588999999999999999999999999999999999999844 444 445779999999999876
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC------eEEEEEeCCCCC
Q 047260 607 LFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD------RQTHSLQGHAEL 676 (784)
Q Consensus 607 ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~------~~i~~l~~h~~~ 676 (784)
-|++|+.+|.|++||+....+...+ ...+.++.+.|+|..++++...|..++|++-+. +++..+..|.+.
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence 5668999999999999976555443 256889999999999999999999999998653 467778899999
Q ss_pred EEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eec
Q 047260 677 VNYICWDTNGDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA 753 (784)
Q Consensus 677 V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~ 753 (784)
+..+.++||+++|++++.+ +++||+..+. +....+.+|...+..|+|+.|+.||++++.|+.+++||+..++.+ ...
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 9999999999999999976 9999999988 666778899999999999999999999999999999999999877 667
Q ss_pred ccCCceEEEEEe
Q 047260 754 AHENIISALAQS 765 (784)
Q Consensus 754 ~h~~~V~slafs 765 (784)
+|.....|++..
T Consensus 298 gh~K~~vc~~ln 309 (311)
T KOG0315|consen 298 GHHKAAVCVALN 309 (311)
T ss_pred CcccccEEEEee
Confidence 887777777654
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=305.94 Aligned_cols=276 Identities=21% Similarity=0.404 Sum_probs=246.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
+..|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. +..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence 4569999999999999999999999999998777777778999999999999999999999999999999987544 333
Q ss_pred eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260 587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET 663 (784)
Q Consensus 587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t 663 (784)
....|...|++++|+|++. .|++|++||.|+|||....+.... +.-.+.++.|+|....+++++.|..|++||.++
T Consensus 175 ~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 3344558999999999655 899999999999999986555444 445689999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCC-CEEEEEECCCeEEE
Q 047260 664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY-STLLVVGGISSLEL 741 (784)
Q Consensus 664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~I 741 (784)
+.++.++.+|+..|..+.|.+++.+|++++.| .++++|+++-+.+.++.+|...|+++.|+|-. ..|.+++.||.|..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 99999999999999999999999999999988 99999999999999999999999999999965 45777888999999
Q ss_pred EECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 742 WNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 742 wdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|.+...+.+ .-.+|...|.+++|+|-|.+|++|+.|.++++|-
T Consensus 334 ~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 334 WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred EeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999855554 3458999999999999999999999999999993
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.1e-33 Score=314.36 Aligned_cols=284 Identities=26% Similarity=0.494 Sum_probs=255.8
Q ss_pred EeEeec-CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 500 VGCIRS-RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 500 i~~l~~-H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
...+.. |...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444544 48899999999999999999999999999998777 777788999999999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECC
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASD 653 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~D 653 (784)
|++....+.+++.+|...|++++|+|++ .++++|+.|+.|++||+++++++..+. ..++.++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966656889999999999999999999 799999999999999999988776655 678999999999999999999
Q ss_pred CcEEEEECCCCe--EEEEEeCCCCC--EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc---eEEEEEec
Q 047260 654 KVVSIFDIETDR--QTHSLQGHAEL--VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQ---FHSCVFHP 725 (784)
Q Consensus 654 g~I~IwDl~t~~--~i~~l~~h~~~--V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~---I~sl~fsp 725 (784)
+.|+|||+.++. ++..+.++... +++++|+|++.+|+++.+| .+++||+..+.++..+.+|... +.+...++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999998 56777776655 9999999999999999987 9999999999999999988775 33445578
Q ss_pred CCCEEEEEECCCeEEEEECCCCceE-Eeccc-CCceEEEEEeCCCCEEEEEE--CCCcEEEeC
Q 047260 726 SYSTLLVVGGISSLELWNMAENKSM-TIAAH-ENIISALAQSPVTGMVASAS--HDSSVKLWK 784 (784)
Q Consensus 726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h-~~~V~slafspdg~~LaSgs--~DG~V~IWd 784 (784)
.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++..+++++++ .|+.|++|+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 8999999999999999999987666 77889 89999999999999999998 799999995
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-33 Score=279.19 Aligned_cols=288 Identities=18% Similarity=0.275 Sum_probs=242.9
Q ss_pred CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
++..-+.+....+....++..+|.|..+.+|....+. ...-..++.+++|...|..+..
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---------------------~~~G~~~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---------------------IKYGVPVRRLTGHSHFVSDVVL 71 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc---------------------cccCceeeeeeccceEecceEE
Confidence 3333444444445555566679999999999876542 1112457889999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260 516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI 595 (784)
Q Consensus 516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V 595 (784)
++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|++...-.....-..+.+-|
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999986432222222337899
Q ss_pred EEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260 596 MSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ 671 (784)
Q Consensus 596 ~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~ 671 (784)
.|+.|+|+. +.+|++++.|+.|++||+++.+....+. +.++.+.++|||..+++|+.||.+.+||++.++.+..+.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 999999985 5689999999999999999877766554 568899999999999999999999999999999988776
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC---------CCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260 672 GHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN---------GNQFHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 672 ~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~---------~~~I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
|...|.+++|+|+...|+.+.+..|+|||+.++.++.++... .....+++|+++|..|+++-.|+.|++|
T Consensus 232 -a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 232 -AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred -CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 889999999999999998888889999999999888777532 2335778999999999999999999999
Q ss_pred ECC
Q 047260 743 NMA 745 (784)
Q Consensus 743 dl~ 745 (784)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 875
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=273.27 Aligned_cols=263 Identities=19% Similarity=0.378 Sum_probs=236.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEE
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSL 598 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl 598 (784)
-+|++++.|.+|++|...+|.+.+++....+.|+.+.+.|+++.||+++. -.||+||+++.+. ++..+.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 38999999999999999999999999888899999999999999999876 5799999998775 788899999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-CCC
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-HAE 675 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h~~ 675 (784)
.|..+|+ .+++|++||+++|||++...+-+.+ ..+|+++..+|+...|+++..+|.|++||+....+.+.+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999987 7789999999999999987665544 48999999999999999999999999999998876666543 556
Q ss_pred CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC------ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260 676 LVNYICWDTNGDYLASVSQN-LVKVWSMASG------ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748 (784)
Q Consensus 676 ~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~------~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~ 748 (784)
.|.++...|||.+++.+.+. ..++|++-+. +++.++..|...+..|.++|++++|++++.|.+++||+.++.-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999988855 9999998764 4677788999999999999999999999999999999999872
Q ss_pred e--EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 749 S--MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 749 ~--~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
. +.+.+|...+..++||.|+.||++|+.|+.+++||
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 2 26789999999999999999999999999999997
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-32 Score=290.60 Aligned_cols=290 Identities=20% Similarity=0.363 Sum_probs=244.3
Q ss_pred CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC---CCCCCeEEEEEccCCCEEEEEeC
Q 047260 493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE---DHKSVVTDVRFRPNSSQLATASV 569 (784)
Q Consensus 493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~It~i~fspdg~~Latgs~ 569 (784)
++.+|+--.+++.|..-|.|+.|+|||.++|+++.||+|.|||=.+++.+..+. +|.+.|.+|+|+||+..|+|++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 456677778889999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCeEEEEcCCCCcc------------------------------------------eeeeccCCCCCeEEEEEcCCCCcE
Q 047260 570 DKSVRLWDAANPNF------------------------------------------CSQAYTGHSSPIMSLDFHPKKTDL 607 (784)
Q Consensus 570 Dg~I~IWdl~~~~~------------------------------------------~~~~~~~h~~~V~sl~~sp~~~~l 607 (784)
|.+++|||+.+.+. +...+.+|...|+++..++++. .
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence 99999999976431 1223568999999999999995 8
Q ss_pred EEEEeCCCeEEEEeCCCCeeE-------------------------------Eee-------------------------
Q 047260 608 FCFCDNDNEIQYWSINPFLCT-------------------------------HIT------------------------- 631 (784)
Q Consensus 608 l~sgs~dg~I~iwDl~~~~~~-------------------------------~~~------------------------- 631 (784)
|++|+.||.|.-||+.++..- +..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 889999999999987421000 000
Q ss_pred ----------------------------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEE
Q 047260 632 ----------------------------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYIC 681 (784)
Q Consensus 632 ----------------------------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~ 681 (784)
.-...+++++|++..+++|+.|+.|+||.+.... ....+..|.++|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 0123456789999999999999999999998754 3334566999999999
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCCCCceE-EEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCC
Q 047260 682 WDTNGDYLASVSQN-LVKVWSMASGECI-QELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHEN 757 (784)
Q Consensus 682 ~spdg~~Lasgsdd-~I~IwDl~t~~~i-~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~ 757 (784)
++||+.||+++.-. .|.+||+.+.+.. ..+..|...|.+++|+|+..++++|+-|-.|.||+++..... ...+|..
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~ 574 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG 574 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc
Confidence 99999999999855 9999999988663 334458999999999999999999999999999999875443 4458988
Q ss_pred ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 758 IISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 758 ~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.|+.+.|-. ...|++.+.|..|++|.
T Consensus 575 gVn~v~wld-e~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 575 GVNSVAWLD-ESTVVSSGQDANIKVWN 600 (603)
T ss_pred CceeEEEec-CceEEeccCcceeEEec
Confidence 899999985 56889999999999995
No 18
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-33 Score=289.52 Aligned_cols=289 Identities=16% Similarity=0.297 Sum_probs=245.3
Q ss_pred CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260 494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570 (784)
Q Consensus 494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~D 570 (784)
.+++.+...+..|++.|+-+.||++|+|||+++.|.+..||++.. .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 356677888999999999999999999999999999999998754 45578889999999999999999999999999
Q ss_pred CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEE
Q 047260 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQL 647 (784)
Q Consensus 571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~L 647 (784)
..+++||+.++......-.++...+.+++|.||+. -+++|+.|+.|..||++....- ......+.++++.+||+++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEE
Confidence 99999999998844443345668899999999997 5778999999999999853321 1112468899999999999
Q ss_pred EEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc--eEEEEEe
Q 047260 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQ--FHSCVFH 724 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~--I~sl~fs 724 (784)
++.+.|..|++|+.++...+..+. ...+|++++.+.+++++.+.-.+ .|.+||+...+.+..+.+|... +..-+|-
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 999999999999998765554333 56789999999999998887755 9999999988889999888543 3333443
Q ss_pred -cCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC-CEEEEEECCCcEEEeC
Q 047260 725 -PSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT-GMVASASHDSSVKLWK 784 (784)
Q Consensus 725 -pdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IWd 784 (784)
.+..++++|+.|+.|+||+..+++.+ .+.+|...|++++|+|.. .++|+||+||+||||.
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 45578999999999999999999988 888999999999999965 4899999999999994
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=264.35 Aligned_cols=281 Identities=21% Similarity=0.428 Sum_probs=238.5
Q ss_pred eeEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCC---Cceeeec-CCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDT---LQTESTP-EDHKSVVTDVRFRPNSSQLATASVDK 571 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t---~~~~~~l-~~h~~~It~i~fspdg~~Latgs~Dg 571 (784)
+..+..+.+|.++|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|..++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999997 88999999999999999984 3444334 47999999999999999999999999
Q ss_pred eEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeec---CCeeEEEEecCC
Q 047260 572 SVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---FLCTHITK---GGTAQVRFQPRI 644 (784)
Q Consensus 572 ~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~---~~v~~v~fsp~~ 644 (784)
++.||.-..+. .+..++.||..+|.|++|+++|. +|++|+.|..|.||.+.. ..|...+. ..|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999866543 47788999999999999999987 899999999999999873 44554444 567888999999
Q ss_pred CEEEEEECCCcEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE
Q 047260 645 GQLLAAASDKVVSIFDIET---DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS 720 (784)
Q Consensus 645 ~~Ll~~s~Dg~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s 720 (784)
..|++++.|++|++|+-.. -.++.++.+|...|.+++|++.|..|++++++ +|+||-..+.- -..|...++.
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence 9999999999999998762 37889999999999999999999999999988 99999866321 1235678899
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCc---eE-----EecccCCceEEEEEeCC-CCEEEEEECCCcEEEeC
Q 047260 721 CVFHPSYSTLLVVGGISSLELWNMAENK---SM-----TIAAHENIISALAQSPV-TGMVASASHDSSVKLWK 784 (784)
Q Consensus 721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~---~~-----~~~~h~~~V~slafspd-g~~LaSgs~DG~V~IWd 784 (784)
+.|. ...|++++.|+.|++|...... .. ....|...|+++.|.|. .++|++|++||.|++|.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9998 4479999999999999766431 11 23478999999999995 67999999999999994
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5e-32 Score=286.09 Aligned_cols=280 Identities=24% Similarity=0.419 Sum_probs=244.7
Q ss_pred EeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CceeeecC----------CCCCCeEEEEEccCCCEE
Q 047260 500 VGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDT----LQTESTPE----------DHKSVVTDVRFRPNSSQL 564 (784)
Q Consensus 500 i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t----~~~~~~l~----------~h~~~It~i~fspdg~~L 564 (784)
++.+. |+.+|.+++|+|-.. .|++|+.|-..++|++.. +.....++ .....|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 44455 999999999999655 899999999999999874 11111111 123679999999999999
Q ss_pred EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEe
Q 047260 565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQ 641 (784)
Q Consensus 565 atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fs 641 (784)
|+|+.||.++||+.... ....+..|.++|.++.|+.+|. +|++++.|+++.+||..++.....+. .+..+|.|.
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999998753 5778889999999999999987 67789999999999998877665544 333667887
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE
Q 047260 642 PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS 720 (784)
Q Consensus 642 p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s 720 (784)
.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.|.+|+++++| +++||......+...+..|...|+.
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 65 568889999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred EEEecCCC---------EEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 721 CVFHPSYS---------TLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 721 l~fspdg~---------~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.|+|++. .+++++.|++|++||+..+.++ .+..|..+|.+|+|+|+++++|+|+.||.|.||+
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999764 6899999999999999999998 6779999999999999999999999999999995
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=266.56 Aligned_cols=279 Identities=21% Similarity=0.344 Sum_probs=246.7
Q ss_pred CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
|+..-+.+.....+..+++ .+|.|+.+.+|++.... ++..+.-....|..|+|
T Consensus 53 GH~~Ki~~~~ws~Dsr~iv-SaSqDGklIvWDs~Ttn--------------------------K~haipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIV-SASQDGKLIVWDSFTTN--------------------------KVHAIPLPSSWVMTCAY 105 (343)
T ss_pred ccccceeeeEecCCcCeEE-eeccCCeEEEEEccccc--------------------------ceeEEecCceeEEEEEE
Confidence 4444466677767777776 58899999999774433 45556667888999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC------ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260 516 SSDGKLLASSGHDRKVVLWNMDTL------QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589 (784)
Q Consensus 516 spdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~ 589 (784)
+|.|+++|+|+-|+...||++.+. ...+.+.+|++.+.|+.|..| ..|+|+|.|.++.+||++++. ....|.
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~ 183 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFH 183 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce-EEEEec
Confidence 999999999999999999999854 455678899999999999975 579999999999999999977 778899
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE
Q 047260 590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ 666 (784)
Q Consensus 590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~ 666 (784)
+|.+.|.++++.|...+.|++|+.|+..++||++...+...+. ..|+.|+|.|+|.-+++|+.|++.++||++....
T Consensus 184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 9999999999999666799999999999999999998887776 5688999999999999999999999999999988
Q ss_pred EEEEeC--CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260 667 THSLQG--HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 667 i~~l~~--h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd 743 (784)
+..+.. ....|++++|+..|++|++|.++ .+.+||.-.++.+..+.+|++.|.++..+|||..+++++.|..|+||.
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 887763 34589999999999999998877 999999999999999999999999999999999999999999999994
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-33 Score=294.95 Aligned_cols=285 Identities=20% Similarity=0.353 Sum_probs=248.9
Q ss_pred eEEeEeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDT-LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL 575 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I 575 (784)
..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 46788999999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~ 652 (784)
||++++.. ...+. ....++|+.|+|++.++|++|..|+.|+.||+++++.+.... +.+..+.|-+++.++++.+.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999884 44333 245789999999998899999999999999999988776554 78899999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC---ceEEEeccCC--CceEEEEEec
Q 047260 653 DKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQN-LVKVWSMASG---ECIQELSSNG--NQFHSCVFHP 725 (784)
Q Consensus 653 Dg~I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~---~~i~~l~~~~--~~I~sl~fsp 725 (784)
|+.++||+.+...++..+.. +.....|+..+|++.++++-+-+ .|.|+.+... ...+.+.+|. +.-..|.|+|
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998877665543 34467789999999999998854 9999987543 2234555653 4456789999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC-CEEEEEECCCcEEEeC
Q 047260 726 SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT-GMVASASHDSSVKLWK 784 (784)
Q Consensus 726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IWd 784 (784)
||.+|++|..||.+.+||.++-+.+ .+.+|+..+..+.|+|.. ..+|+|+.||.|++||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999998887 788999999999999975 4899999999999997
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=296.41 Aligned_cols=287 Identities=23% Similarity=0.374 Sum_probs=258.8
Q ss_pred eeEEeEeecCCCceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFS-SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL 575 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fs-pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I 575 (784)
+..++.+-|.++.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+||+.|+++++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 34455667888999999975 46789999999999999998876665 78899999999996667889999999999999
Q ss_pred EcCCCCc---ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------------eEEeecCCeeEEEE
Q 047260 576 WDAANPN---FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------------CTHITKGGTAQVRF 640 (784)
Q Consensus 576 Wdl~~~~---~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------------~~~~~~~~v~~v~f 640 (784)
|.++++. .+.....+|...|.+++++..+..+|++++.|++|++|++...+ ....|...|+++++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 9885432 34556779999999999999899999999999999999997511 12335578999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceE
Q 047260 641 QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH 719 (784)
Q Consensus 641 sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~ 719 (784)
+|+...+++|+.|++.+||+++.......+.+|...|.||.|++....+++++.| +|+||.+.++.|+++|.+|...|.
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999999999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.+.|-.++..|++++.||-|++|++++++|. ++..|++.|++++.++...+++||+.||.|.+|+
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999998 8899999999999999999999999999999995
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.8e-31 Score=272.12 Aligned_cols=320 Identities=18% Similarity=0.223 Sum_probs=274.0
Q ss_pred CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260 434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC 513 (784)
Q Consensus 434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l 513 (784)
.+.+....-+....| ..+++++|+-|+...+|....+. ....+.+|.+.|+|+
T Consensus 60 F~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge--------------------------~~~eltgHKDSVt~~ 112 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGE--------------------------FAGELTGHKDSVTCC 112 (399)
T ss_pred hhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCc--------------------------ceeEecCCCCceEEE
Confidence 334444444555555 77888899999999999875543 345678899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260 514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS 593 (784)
Q Consensus 514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~ 593 (784)
.|+.||.+||||+.+|.|+||+..++.....+...-..|.-+.|+|.+.+|+.|+.||.|-+|.+.+.. ..+.+.+|..
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~ 191 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNS 191 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCC
Confidence 999999999999999999999999999988887677889999999999999999999999999999864 6788999999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS 669 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~ 669 (784)
++++=.|.|+|+ .++++..||+|++|++.++..++... ....++.++..+..++.|..++.+++....+++.+..
T Consensus 192 ~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 192 PCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred CcccccccCCCc-eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 999999999987 67788899999999999988887766 4567888999999999999999999999999988877
Q ss_pred Ee--------CCCCCEEEEEE---cCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260 670 LQ--------GHAELVNYICW---DTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737 (784)
Q Consensus 670 l~--------~h~~~V~sl~~---spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg 737 (784)
.. .+...+.||.+ +..-.+.|+|+ +++|.|||+...+..+.+ .|...|..+.|.+ ..+|++++.+|
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCc
Confidence 76 34444555554 44556777777 669999999887665544 5677899999999 77999999999
Q ss_pred eEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 738 SLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 738 ~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.|+.||.+++.++ .+.+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999988 8889999999999999999999999999999985
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.7e-32 Score=300.99 Aligned_cols=273 Identities=25% Similarity=0.441 Sum_probs=236.8
Q ss_pred EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeeecCCC
Q 047260 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-------------------------------QTESTPEDH 548 (784)
Q Consensus 500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-------------------------------~~~~~l~~h 548 (784)
+-++..-...|+|+.|++|+..||.|..|..|++|.+... ....++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 3444445667999999999999999999999999988631 122345689
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT 628 (784)
Q Consensus 549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~ 628 (784)
.++|..+.|+|+.++|++||.|++||+|.+.+.. +...+.+|..+|+++.|+|.| ++|++++.|++-++|........
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCch
Confidence 9999999999999999999999999999999866 777888999999999999986 48999999999999999876666
Q ss_pred Eeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 047260 629 HITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS 704 (784)
Q Consensus 629 ~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t 704 (784)
+++. ..+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+++ .|+|||+.+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 6554 678899999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-------------------------EecccCCce
Q 047260 705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-------------------------TIAAHENII 759 (784)
Q Consensus 705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-------------------------~~~~h~~~V 759 (784)
++.+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+..-..+|
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv 688 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV 688 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence 9999999999999999999999999999999999999998643221 222334577
Q ss_pred EEEEEeCCCCEEEEE
Q 047260 760 SALAQSPVTGMVASA 774 (784)
Q Consensus 760 ~slafspdg~~LaSg 774 (784)
.+|.|....-.|++|
T Consensus 689 ~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 689 VGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEeccceeEEec
Confidence 888888765455544
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-30 Score=315.74 Aligned_cols=279 Identities=17% Similarity=0.320 Sum_probs=236.0
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c----eeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeE
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----Q----TESTPEDHKSVVTDVRFRP-NSSQLATASVDKSV 573 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~----~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I 573 (784)
+..|.+.|++++|+|+|++||+|+.|+.|+|||+... . ....+ .+...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 12223 2456899999998 57899999999999
Q ss_pred EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEe-cCCCEEEEE
Q 047260 574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQ-PRIGQLLAA 650 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fs-p~~~~Ll~~ 650 (784)
+|||+.++. ....+.+|...|++++|+|....+|++|+.|+.|++||+++..++..+. ..+.++.|. +++..|++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999999866 5677889999999999998656689999999999999999877665543 567888885 568899999
Q ss_pred ECCCcEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC------CceEEEeccCCCceEEEE
Q 047260 651 ASDKVVSIFDIETDR-QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS------GECIQELSSNGNQFHSCV 722 (784)
Q Consensus 651 s~Dg~I~IwDl~t~~-~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t------~~~i~~l~~~~~~I~sl~ 722 (784)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|+|||++. ..++..+.+|...+.++.
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998865 567788899999999997 67788887755 999999974 367889999999999999
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCceE--------------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 723 FHPSYSTLLVVGGISSLELWNMAENKSM--------------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 723 fspdg~~L~s~s~dg~I~Iwdl~~~~~~--------------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|++++.+|++++.|+.|++|+....... ....|...|.+++|++++.+|++|+.||.|+|||
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1133556799999999999999999999999997
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=287.57 Aligned_cols=287 Identities=17% Similarity=0.339 Sum_probs=252.9
Q ss_pred cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD-RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV 573 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D-g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I 573 (784)
..|..++.+.-...+|..++|+..|++||.|+.. |.+.||++.+...+....+|...|++++++|||.++|||+.||.|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 3466788888888999999999999999998765 899999999988888999999999999999999999999999999
Q ss_pred EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC----eeEEEEecCCCEEEE
Q 047260 574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG----TAQVRFQPRIGQLLA 649 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~----v~~v~fsp~~~~Ll~ 649 (784)
+|||...+. |..++..|++.|+.+.|+..+. .+++.+-||+|+.||+...++.+.+..+ ..|++..|.|..+++
T Consensus 375 KvWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 375 KVWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 999999866 8899999999999999999887 6777888999999999999988888743 478889999999999
Q ss_pred EECC-CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccCCCceEEEEEecC
Q 047260 650 AASD-KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 650 ~s~D-g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~~~~I~sl~fspd 726 (784)
|+.| -.|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++-| +|++||+-... .+.++ .....+..++|+|+
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPD 531 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCC
Confidence 8887 579999999999999999999999999999999999999965 99999987653 33344 44577899999999
Q ss_pred CCEEEEEECCCeEEEEECCCCceE-E----------------e----cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 727 YSTLLVVGGISSLELWNMAENKSM-T----------------I----AAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 727 g~~L~s~s~dg~I~Iwdl~~~~~~-~----------------~----~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+.|++++.||.|.+||...+... . + ......++.|++++||.+|++|+....|+||+
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 999999999999999998875433 1 1 11235789999999999999999999999985
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=3.8e-32 Score=276.76 Aligned_cols=269 Identities=17% Similarity=0.396 Sum_probs=234.8
Q ss_pred EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
+.+-......|.|+.+. ...+++|..|.+|+|||.++..+...+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.
T Consensus 190 inc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 190 INCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred ecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 33333456779999985 5579999999999999999999999999999999999995 6699999999999999999
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee------EEeecCCeeEEEEecCCCEEEEEECC
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC------THITKGGTAQVRFQPRIGQLLAAASD 653 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~------~~~~~~~v~~v~fsp~~~~Ll~~s~D 653 (784)
+++ ++.++.+|...|..+.|+.. ++++|+.|..|.+||+..... +..+...+..+.|+. +++++++.|
T Consensus 266 tge-~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgD 339 (499)
T KOG0281|consen 266 TGE-PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD 339 (499)
T ss_pred CCc-hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCC
Confidence 987 78889999999999999843 899999999999999986432 233446677777754 599999999
Q ss_pred CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260 654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV 732 (784)
Q Consensus 654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s 732 (784)
.+|++|++.+++.++++.+|...|.|+.+ .++++++|+.| +|++||+..|.|++.+.+|+.-|.++.|.. +.|++
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVS 415 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVS 415 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeee
Confidence 99999999999999999999999998876 58999999866 999999999999999999999999999954 48999
Q ss_pred EECCCeEEEEECCCCceE----------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 733 VGGISSLELWNMAENKSM----------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 733 ~s~dg~I~Iwdl~~~~~~----------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+.||+|+|||+..+.-. ++..|.+.|..+.|. ...|+++++|.+|.|||
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999999875321 566899999999996 56799999999999997
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.4e-29 Score=270.55 Aligned_cols=284 Identities=19% Similarity=0.310 Sum_probs=239.3
Q ss_pred EEeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
.+..+.+|...|++|+|-|... +++||++|++|.+|+=...+...++..|...|.|+.|+|||.++++++.||.|.|||
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 4677889999999999999776 699999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCcceeeecc---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----------------------
Q 047260 578 AANPNFCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----------------------- 631 (784)
Q Consensus 578 l~~~~~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----------------------- 631 (784)
=.+++ .+..+. +|.+.|.+++|+||+. -|++++.|.+++|||+.+.+++..+
T Consensus 219 Gktge-~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 219 GKTGE-KVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred CCCcc-EEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 99887 444455 8999999999999987 6778899999999998654332221
Q ss_pred -----------------------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE-----------EEEe------
Q 047260 632 -----------------------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT-----------HSLQ------ 671 (784)
Q Consensus 632 -----------------------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i-----------~~l~------ 671 (784)
...|+++..++++.+|++++.||.|.-||..++..- ..+.
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 235788889999999999999999999998654211 0000
Q ss_pred ---------------------CC-------------------------------------------CCCEEEEEEcCCCC
Q 047260 672 ---------------------GH-------------------------------------------AELVNYICWDTNGD 687 (784)
Q Consensus 672 ---------------------~h-------------------------------------------~~~V~sl~~spdg~ 687 (784)
.+ .-...+++++|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 00 00124567889999
Q ss_pred EEEEEeCC-eEEEEeCCCCce--EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEE
Q 047260 688 YLASVSQN-LVKVWSMASGEC--IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISAL 762 (784)
Q Consensus 688 ~Lasgsdd-~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~sl 762 (784)
++++|++| .|+||.+..+.. ...+..|..+|++++|+||+.+|+++...+.+.+||+.+.+.. .+.-|...|.++
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 99999866 999999987653 3345678999999999999999999999999999999998775 455799999999
Q ss_pred EEeCCCCEEEEEECCCcEEEeC
Q 047260 763 AQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 763 afspdg~~LaSgs~DG~V~IWd 784 (784)
+|+|+..+||||+-|-+|.||+
T Consensus 537 aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EeCCCceEEEeccccceEEEEE
Confidence 9999999999999999999995
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.5e-29 Score=279.44 Aligned_cols=279 Identities=19% Similarity=0.313 Sum_probs=253.7
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-CeEEEEcCCCCc
Q 047260 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-KSVRLWDAANPN 582 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g~I~IWdl~~~~ 582 (784)
......|+|++|++..+.||+|-..|...+|.+.....++.+.-....|..++|+..|.+|+.|+.. |.+-||+..+..
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 3344889999999999999999999999999999999999998888999999999999999998875 899999999866
Q ss_pred ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260 583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIF 659 (784)
Q Consensus 583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw 659 (784)
.+....+|...+.+++++|||. ++++|++||.|+|||...+-|+..+. ..++.+.|+..++.+++.+-||+|+.|
T Consensus 342 -YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 342 -YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred -eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 4555679999999999999998 88999999999999999999987766 678899999999999999999999999
Q ss_pred ECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260 660 DIETDRQTHSLQGH-AELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 660 Dl~t~~~i~~l~~h-~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d 736 (784)
|+...+..++|... .....|++.+|.|.++++|+.+ .|.||++.+|+.+..+.+|+++|.+++|+|++..|++++.|
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 99999999998753 3467889999999999999976 89999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCc-eEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 737 SSLELWNMAENK-SMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 737 g~I~Iwdl~~~~-~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.+|++||+-... ......+...|.+++|+|||+-|+++..||.|.+||
T Consensus 500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 999999986653 345557778899999999999999999999999997
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.2e-30 Score=288.35 Aligned_cols=316 Identities=20% Similarity=0.306 Sum_probs=262.5
Q ss_pred ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260 441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK 520 (784)
Q Consensus 441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~ 520 (784)
+-.+.|.+.. .++++|+.|+.+++|+.... .....|++|.+.|.++.|+|+-.
T Consensus 108 vi~ma~~~~g-~LlAtggaD~~v~VWdi~~~--------------------------~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 108 VITMAFDPTG-TLLATGGADGRVKVWDIKNG--------------------------YCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred eEEEEEcCCC-ceEEeccccceEEEEEeeCC--------------------------EEEEEecCCCceEEEEEeCCccc
Confidence 3344555556 78889999999999988443 25778999999999999999654
Q ss_pred --EEEEEeCCCeEEEEECCCCc-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc--------------
Q 047260 521 --LLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-------------- 583 (784)
Q Consensus 521 --~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-------------- 583 (784)
.|++|..|+.|++||+.+.. ++..+..|.+.|+++.|.+|+..+++++.|..|.|||+...+.
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 58999999999999999554 4788889999999999999999999999999999998741100
Q ss_pred --------------------------------------------------------------------------------
Q 047260 584 -------------------------------------------------------------------------------- 583 (784)
Q Consensus 584 -------------------------------------------------------------------------------- 583 (784)
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence
Q ss_pred ------------------------------------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 047260 584 ------------------------------------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627 (784)
Q Consensus 584 ------------------------------------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~ 627 (784)
....+.+|+..|.+++...+| .+|++|+.|..+++|.++...+
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc
Confidence 000124677777777744444 5999999999999998854322
Q ss_pred -------EEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeE---EE------EEeCCCCCEEEEEEcCCCCEEE
Q 047260 628 -------THITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQ---TH------SLQGHAELVNYICWDTNGDYLA 690 (784)
Q Consensus 628 -------~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~---i~------~l~~h~~~V~sl~~spdg~~La 690 (784)
...+...+.+++++..+ ..|++++.|++|++|++...+. .. ....|...|+|++.+|+.++|+
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 23455778888886655 4577888899999999976221 11 2236999999999999999999
Q ss_pred EEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC
Q 047260 691 SVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT 768 (784)
Q Consensus 691 sgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg 768 (784)
+|+.| +.+||++.....+.++.+|...|.++.|++....+++++.|++|+||.+.+..++ ++.+|...|..+.|-.++
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG 559 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence 99977 9999999999999999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 047260 769 GMVASASHDSSVKLWK 784 (784)
Q Consensus 769 ~~LaSgs~DG~V~IWd 784 (784)
..|+|++.||.|+||+
T Consensus 560 ~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWN 575 (775)
T ss_pred cEEEeccCCCcEEEEe
Confidence 9999999999999996
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=7.4e-31 Score=293.14 Aligned_cols=274 Identities=21% Similarity=0.351 Sum_probs=226.1
Q ss_pred eeeeecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccc-cCCC-----CccCCCCCCcceeEEe
Q 047260 428 TLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTL-KHSP-----EHQKQPTKGFTFCEVG 501 (784)
Q Consensus 428 ~~~~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~-~~~~-----~~~~~~~~~~~~~~i~ 501 (784)
+..++....+....++..|.++.. +++.|-.|..|++|...... -+.+-... .... .......+...-...+
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhh-hccccchhhhccccccccchhhhhccccCCceeE
Confidence 344444444555566677766655 77789999999999775321 00100000 0000 0001111222233456
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
++.+|.++|..+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|.|-||||++.|++.++|..+..
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
. ..+++.+|-+.|.|+.|+|+.. ++++|+.|.+|++||+.++..++.+. ++|.+++|+|+|.+|++|+.|+.|.+
T Consensus 526 ~-PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 526 K-PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred C-chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 5 8899999999999999999977 88899999999999999998888765 67899999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 047260 659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG 705 (784)
Q Consensus 659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~ 705 (784)
||+.+++.+..+.+|.+.|.++.|+.+|.+||+++.| +|++||+..-
T Consensus 604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999966 9999998653
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=282.31 Aligned_cols=279 Identities=22% Similarity=0.396 Sum_probs=254.5
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
.+..|..+|.|+.|+|...+++++-.+|.|.|||.++...++.+.....+|.+..|-...+++++|++|..|+||+..+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEeecCC---eeEEEEecCC-CEEEEEECCCcE
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHITKGG---TAQVRFQPRI-GQLLAAASDKVV 656 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~~~~~---v~~v~fsp~~-~~Ll~~s~Dg~I 656 (784)
+ .+..+..|.+-|.||+.||..+ +++++++|-.|++||.+. ..|...++++ |.+++|+|.. +.+++++-|++|
T Consensus 88 e-kV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 88 E-KVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred e-eeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 7 6788999999999999999988 677889999999999985 5666666654 7889999965 568888889999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260 657 SIFDIETDRQTHSLQGHAELVNYICWDTNG--DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg--~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
+||.+....+..++.+|...|+||++-+.| .+|++|+|| +|+|||..+..|+.++.+|...|..+.|+|.-+.|++|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 999999999999999999999999998755 599999998 99999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 734 GGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 734 s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
+.||+++||+..+-+.. ++...-++|.||+-.+.++.++.|.++|.|.|
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999887766 55566788999999999999999999998764
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.4e-31 Score=278.33 Aligned_cols=273 Identities=22% Similarity=0.383 Sum_probs=232.2
Q ss_pred ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260 443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL 522 (784)
Q Consensus 443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L 522 (784)
.+.-.++..+++ +|+..|.+.+|.. ..|.-...+.+|++.|+++.|+++|.++
T Consensus 101 ~v~WtPeGRRLl-tgs~SGEFtLWNg--------------------------~~fnFEtilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 101 VVRWTPEGRRLL-TGSQSGEFTLWNG--------------------------TSFNFETILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred eEEEcCCCceeE-eecccccEEEecC--------------------------ceeeHHHHhhhhcccceeEEEccCCCEE
Confidence 344456677777 5888888888844 1122223467899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc
Q 047260 523 ASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH 601 (784)
Q Consensus 523 asgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s 601 (784)
++|+.+|.|++|+..-. .+..+. .|...|++++|+|+...|++|++||+|+|||....+ ....+.+|.-.|.+++|+
T Consensus 154 iSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCCCcceeccC
Confidence 99999999999998743 344444 455999999999999999999999999999998766 456679999999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEE
Q 047260 602 PKKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVN 678 (784)
Q Consensus 602 p~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~ 678 (784)
|... ++++++.|..|++||.+++.|+. .++..|..+.|++++++|++++.|..+++||+++.+.+..+++|+..|+
T Consensus 232 P~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 232 PTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred Cccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 9876 89999999999999999998875 4567889999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC-CEEEEEe-CCeEEEEeCCCCceEEEec-cCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 679 YICWDTNG-DYLASVS-QNLVKVWSMASGECIQELS-SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 679 sl~~spdg-~~Lasgs-dd~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
++.|+|-. .+|++++ |+.|..|.+...+++..+. .|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999944 4555555 6699999998666666654 788999999999999999999999999999653
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=265.70 Aligned_cols=267 Identities=21% Similarity=0.422 Sum_probs=241.6
Q ss_pred CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260 450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR 529 (784)
Q Consensus 450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg 529 (784)
...++.+.+.|.++++|+...+. ..+.+++|++.|.+|+|+..|++||+++.|=
T Consensus 119 ~~~~v~~as~d~tikv~D~~tg~--------------------------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 119 SEALVVSASEDATIKVFDTETGE--------------------------LERSLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred CceEEEEecCCceEEEEEccchh--------------------------hhhhhhccccceeEEEEecCccEEEecCCcc
Confidence 34455667789999999874433 2456889999999999999999999999999
Q ss_pred eEEEEECCC-CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260 530 KVVLWNMDT-LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF 608 (784)
Q Consensus 530 ~I~IWd~~t-~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll 608 (784)
.+.+||..+ .++++.+.+|...|.++.|-|.|.+|++++.|.+|+.|++.++. ++..+.+|..-|..+..+.||. ++
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt-i~ 250 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT-II 250 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee-EE
Confidence 999999986 67778888999999999999999999999999999999999966 8999999999999999999987 99
Q ss_pred EEEeCCCeEEEEeCCCCee---EEeecCCeeEEEEecCC---------------CEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 609 CFCDNDNEIQYWSINPFLC---THITKGGTAQVRFQPRI---------------GQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 609 ~sgs~dg~I~iwDl~~~~~---~~~~~~~v~~v~fsp~~---------------~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
++|+.|.+|++|-+.+..| .+.++.++.+++|.|.. ..+.+++.|++|++||+.++.++.++
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 9999999999999998844 46666788888887632 37888888999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260 671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl 744 (784)
.+|...|..++|+|.|+||+++.|| +++|||++++.|..++..|..-++++.|+.+..++++|+-|-++++|..
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999988 9999999999999999999999999999999999999999999999974
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=247.80 Aligned_cols=280 Identities=16% Similarity=0.357 Sum_probs=240.7
Q ss_pred eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
..+.+.+..|.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CeeEEe---ecCCeeEEEEecCCCEEEEEE
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--FLCTHI---TKGGTAQVRFQPRIGQLLAAA 651 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~~~~~~---~~~~v~~v~fsp~~~~Ll~~s 651 (784)
|+.+++ ..+.+.+|.+.|..+.|+.+.. ++++|+.|..+++||.++ .+.+.+ ....+.++.+. +..|++|+
T Consensus 87 DV~TGk-v~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGK-VDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCe-eeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999988 7888999999999999997765 999999999999999985 333433 34667777664 46788999
Q ss_pred CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCce--EEEEEecCCC
Q 047260 652 SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQF--HSCVFHPSYS 728 (784)
Q Consensus 652 ~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I--~sl~fspdg~ 728 (784)
.||+++.||++.+...... ...+|+|++|+++++.+..++ +.+|++.|-.+|+.+..+++|.+.- ..|++.....
T Consensus 163 ~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 9999999999999876554 456899999999999888877 5599999999999999999987653 4567777888
Q ss_pred EEEEEECCCeEEEEECCCCceE-EecccCCc-eEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 729 TLLVVGGISSLELWNMAENKSM-TIAAHENI-ISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 729 ~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~-V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.+++|+.||.|++||+.+...+ .+..|... |.++.++|.-..|+++.. +.+.+|
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 9999999999999999998887 45555555 789999998777777653 445555
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.9e-28 Score=255.18 Aligned_cols=276 Identities=26% Similarity=0.485 Sum_probs=238.2
Q ss_pred CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260 439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD 518 (784)
Q Consensus 439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd 518 (784)
..+.+..+.++.. ++.+++.|+.+.+|+..... ....+..|...|.++.|+++
T Consensus 10 ~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 10 GGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGE--------------------------LLRTLKGHTGPVRDVAASAD 62 (289)
T ss_pred CCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCC--------------------------cEEEEecCCcceeEEEECCC
Confidence 3455556656544 45567789999999774322 34456678899999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
+++|++++.||.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.++
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~ 141 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSV 141 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEE
Confidence 9999999999999999999888888888999999999999998889888889999999998755 556666888999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~ 675 (784)
+|+|++. ++++++.++.|++||++..+....+ ...+.++.|+|++..+++++.++.|++||++.++.+..+..|..
T Consensus 142 ~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 142 AFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred EEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence 9999854 7777777999999999866554443 35789999999999999999999999999999999888888999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260 676 LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 676 ~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd 743 (784)
.+.+++|++++.++++++ ++.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999988 66999999999999999998989999999999999999999999999996
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=278.97 Aligned_cols=278 Identities=23% Similarity=0.370 Sum_probs=253.2
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
.+.+|...|.+++||.|...+++|+ .+.|+||+.++.++++++... .+.+..|.|.++++++|...|.+-+||+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 4678999999999999987777765 567999999999999999643 8999999999999999999999999999986
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--------e-------eEEeecCCeeEEEEecCCCE
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--------L-------CTHITKGGTAQVRFQPRIGQ 646 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--------~-------~~~~~~~~v~~v~fsp~~~~ 646 (784)
. .+.....|.+.|++++..|++. -+++++.|.+|++||..-. + ....+...+.|+.++|++++
T Consensus 445 ~-l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 S-LVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred h-hhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 6 5666779999999999999987 6778999999999998521 1 22334578999999999999
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260 647 LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP 725 (784)
Q Consensus 647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp 725 (784)
|+++--|++|+||-+.+.+...++.+|.-+|.|+..+||++++++|+.| .|+||-+.-|.|-+.+.+|...|.++.|.|
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 9999999999999999999999999999999999999999999999966 999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 726 SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999998887766 8899999999999999999999999999999995
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=8.1e-29 Score=255.04 Aligned_cols=283 Identities=16% Similarity=0.232 Sum_probs=245.5
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl 578 (784)
.+.+|..|+..|.+++.+|+.+++|||+.|....||++.++.....+.+|+..|+++.|+.+|.+||||..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCc
Q 047260 579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
.++.. ...+......|.-+.|||.+. +|+.|+.||.|.+|.+.+......+. .++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99774 444445567789999999765 88889999999999999854444444 56777789999999999999999
Q ss_pred EEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc--------CCCceEEE---E
Q 047260 656 VSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS--------NGNQFHSC---V 722 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~--------~~~~I~sl---~ 722 (784)
|++|++.++.+++.+.. ......++.++..+..++.|+.+ .+++....+|+.+....+ +...+.++ .
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999999999998874 34467888999999999988855 888989888888777662 33334444 4
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 723 FHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 723 fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55556778899999999999999999999999999999999999 78999999999999997
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.6e-30 Score=250.91 Aligned_cols=277 Identities=22% Similarity=0.293 Sum_probs=250.4
Q ss_pred eecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 503 IRSRNSKVTCCHFSS---DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 503 l~~H~~~V~~l~fsp---dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
-.+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.+|.+|.+.|+...++.+....++++.|-+-+|||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 468999999999987 88899999999999999999999999999999999999999998899999999999999999
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEeecCCeeEEEEecCCCEEEEEECCCc
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTHITKGGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
++.. +..+ .|...|.+++|+.|.. .+++|+.+..++|||++. .+.+..+.+.|..+.|......|++.+.|++
T Consensus 90 tgde-lhsf-~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 90 TGDE-LHSF-EHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhh-hhhh-hhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 8773 3333 5788899999998876 677899999999999985 3455667788999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~ 735 (784)
|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+..+++.++-. ..|.+...+|+...+++|+.
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCc
Confidence 9999999999999987 678899999999999999988889999999999999888655 67899999999999999999
Q ss_pred CCeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 736 ISSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 736 dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|..++.||..++..+.. .+|.++|.|+.|+|||...++|+.||+|+||.
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 99999999999988843 79999999999999999999999999999994
No 41
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4.9e-29 Score=251.10 Aligned_cols=285 Identities=22% Similarity=0.430 Sum_probs=242.5
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeeecCCCCCCeEEEEEcc
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT------------------LQTESTPEDHKSVVTDVRFRP 559 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t------------------~~~~~~l~~h~~~It~i~fsp 559 (784)
-|...+..|..++.+.+|++||.++|+|+.|..|+|.|++. --.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 45667888999999999999999999999999999999872 135677889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcceeee--ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------e
Q 047260 560 NSSQLATASVDKSVRLWDAANPNFCSQA--YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------T 631 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~--~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------~ 631 (784)
...+|++|+.|++|++||+.... ..+. ......+|.+|.|+|.|. ++++|.....+++||+++..|... +
T Consensus 183 re~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hhheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 99999999999999999998643 2221 223457899999999998 666788889999999999888754 4
Q ss_pred cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-CCC-CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceE
Q 047260 632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-HAE-LVNYICWDTNGDYLASVSQN-LVKVWSMASGECI 708 (784)
Q Consensus 632 ~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h~~-~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i 708 (784)
.+.|+++.+++.++..++++.||.|++||--+++++.++.. |.+ .|.+..|..+|+||.+.+.| .|++|.+.+++++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 47899999999999999999999999999999999988864 554 78999999999999998866 9999999999999
Q ss_pred EEeccCCC-----ceEEEEEecCCCEEEEEECC-CeEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcE
Q 047260 709 QELSSNGN-----QFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSV 780 (784)
Q Consensus 709 ~~l~~~~~-----~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V 780 (784)
.++.+.+. --+...|+....|++.-... +.+.-||.++...+ ...+|.+.+..+..+|.+..+++|++|-++
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 99976521 12345677777777776654 68999999988776 345899999999999999999999999999
Q ss_pred EEeC
Q 047260 781 KLWK 784 (784)
Q Consensus 781 ~IWd 784 (784)
++|.
T Consensus 421 RFWy 424 (430)
T KOG0640|consen 421 RFWY 424 (430)
T ss_pred eeee
Confidence 9993
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.8e-29 Score=281.71 Aligned_cols=278 Identities=24% Similarity=0.416 Sum_probs=240.3
Q ss_pred ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260 441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK 520 (784)
Q Consensus 441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~ 520 (784)
+....|.++... ++.++.|+.+++|......+ .....+.+|...|.+++|+||++
T Consensus 162 v~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~------------------------~~~~~l~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 162 VTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKS------------------------NLLRELSGHTRGVSDVAFSPDGS 216 (456)
T ss_pred eEEEEEcCCCCe-EEEccCCCcEEEeecccccc------------------------hhhccccccccceeeeEECCCCc
Confidence 334566666666 56788999999997722221 23444578999999999999999
Q ss_pred EEEEEeCCCeEEEEEC-CCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260 521 LLASSGHDRKVVLWNM-DTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599 (784)
Q Consensus 521 ~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~ 599 (784)
++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++ +...+.+|...|++++
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLA 295 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEE
Confidence 9999999999999999 5668999999999999999999999999999999999999999965 8899999999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEeec---C--CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260 600 FHPKKTDLFCFCDNDNEIQYWSINPFL--CTHITK---G--GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG 672 (784)
Q Consensus 600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~~~---~--~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~ 672 (784)
|++++. ++++++.|+.|++||+.++. +..... . .++.+.|+|++.++++++.|+.+++||+..+..+..+.+
T Consensus 296 f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 296 FSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred ECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 999988 66667889999999999988 333332 2 478899999999999999999999999999999999998
Q ss_pred CCCC---EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC-CCceEEEEEecCCCEEEEEE--CCCeEEEEECC
Q 047260 673 HAEL---VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN-GNQFHSCVFHPSYSTLLVVG--GISSLELWNMA 745 (784)
Q Consensus 673 h~~~---V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~-~~~I~sl~fspdg~~L~s~s--~dg~I~Iwdl~ 745 (784)
|... +.+...++.+.++++++.+ .|++||+.++..+..+.+| ...+..+.++|...++++++ .|+.|++|...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 8874 4444567899999999977 9999999999999999999 88899999999999999998 67899999754
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-28 Score=242.77 Aligned_cols=279 Identities=18% Similarity=0.268 Sum_probs=236.8
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
.+.+|+.+++-+.|+.+|.+|++|+.|.++.||-..+++.+-++.+|.+.|+||..+-+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEe----CCCeEEEEeCCC-------Ce---eEEeecCCeeEEEEecCCCEE
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD----NDNEIQYWSINP-------FL---CTHITKGGTAQVRFQPRIGQL 647 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs----~dg~I~iwDl~~-------~~---~~~~~~~~v~~v~fsp~~~~L 647 (784)
+. +..+. ...+|..+.|+.++..++++.+ ..+.|.++|++. .. .+......++.+.|.|.+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 84 44333 4578999999999986666543 347899999972 22 223334678889999999999
Q ss_pred EEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260 648 LAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP 725 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp 725 (784)
++|..||.|.+||++++ +.+.+...|...|+.+++++|..++++++.| +-++||+++-++++++... .+|++.+++|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP 241 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISP 241 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccc
Confidence 99999999999999998 5555567799999999999999999999977 9999999999999999654 7899999999
Q ss_pred CCCEEEEEECCCe--EEEEECCCC------------ceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 726 SYSTLLVVGGISS--LELWNMAEN------------KSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 726 dg~~L~s~s~dg~--I~Iwdl~~~------------~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
...+++.++.-.. |.-=+.+.+ +.+ .+.+|-++|++|+|+|+|+..++|+.||.|+|.
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9888888876432 222222222 122 677899999999999999999999999999973
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-28 Score=275.51 Aligned_cols=278 Identities=22% Similarity=0.412 Sum_probs=246.4
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~ 582 (784)
|...+.+|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...++++|++|..|+||+.++.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecCCCEEEEEECCCcEEEE
Q 047260 583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPRIGQLLAAASDKVVSIF 659 (784)
Q Consensus 583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~~~Ll~~s~Dg~I~Iw 659 (784)
+..++.+|-+.|..+.||+.-+ .++++++|.+|+||+..+.+|+....++ |.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 8889999999999999999988 6678999999999999999999887754 6788899999999999999999999
Q ss_pred ECCCCe-----------------------------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc--e
Q 047260 660 DIETDR-----------------------------QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE--C 707 (784)
Q Consensus 660 Dl~t~~-----------------------------~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~--~ 707 (784)
|+..-+ ..+.+.+|...|+-++|+|.-.+|++|+|| .|++|.+...+ .
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE 242 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 242 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence 984210 123467899999999999999999999988 99999987654 4
Q ss_pred EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
+.+..+|-+.|.++.|+|.-..|++.+.|++|+|||+...+.+ ++....++.+.++.+|..++++.| +|+-+.||
T Consensus 243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 6677899999999999999999999999999999999998888 555667789999999999888866 55555555
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-28 Score=240.78 Aligned_cols=280 Identities=19% Similarity=0.304 Sum_probs=246.8
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--ecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEc
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES--TPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWD 577 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWd 577 (784)
+.+++|...|.+++|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678899999999999999999999999999999998765444 3468999999999998 667899999999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCc
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
++.++.+..+.. ...=.-+.|+|++. .+++++.|..|.+.|.++.+.....+ ..+..++|+-++..++.....|.
T Consensus 94 ~r~~k~~~~i~~--~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIET--KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeec--cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999884444332 23334678999988 66778889999999999877765544 66788999987787887777899
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s 734 (784)
|.|......+++..++.|.....||.|+|+|+||++|+.| .+.+||+..--|++.+..+.-+|..+.|+-+|++|++++
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 9999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC---------CcEEEe
Q 047260 735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD---------SSVKLW 783 (784)
Q Consensus 735 ~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D---------G~V~IW 783 (784)
.|..|-|-++.+|..+.-..++++...|+|+|...+||-+++| |.|++|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999888999999999999999999988765 567765
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=267.12 Aligned_cols=305 Identities=18% Similarity=0.313 Sum_probs=238.0
Q ss_pred CCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC
Q 047260 449 DIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD 528 (784)
Q Consensus 449 ~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D 528 (784)
+...++++|-.||.|++|...+. ....++.+|...|+++.|+..|..||+|+.|
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~--------------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskD 128 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESE--------------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKD 128 (888)
T ss_pred CCcceEEEEecCceEEeeccCCC--------------------------ceeeeecccccceEEEEEcccCceEeecCCC
Confidence 34455678999999999965322 2445678999999999999999999999999
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF 608 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll 608 (784)
+.|.|||+-...-...+++|.+.|+..-|..+.++|++++.|+.|++||+++.. |..+...|.+.|+.+++++ .++
T Consensus 129 t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqh-Cf~Thvd~r~Eiw~l~~~~---~~l 204 (888)
T KOG0306|consen 129 TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQH-CFETHVDHRGEIWALVLDE---KLL 204 (888)
T ss_pred ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccce-eeeEEecccceEEEEEEec---ceE
Confidence 999999999888889999999999999999888999999999999999998533 3444444444444444443 133
Q ss_pred EEEeC---------------------------------------------------------------------------
Q 047260 609 CFCDN--------------------------------------------------------------------------- 613 (784)
Q Consensus 609 ~sgs~--------------------------------------------------------------------------- 613 (784)
+++..
T Consensus 205 vt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~ 284 (888)
T KOG0306|consen 205 VTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILS 284 (888)
T ss_pred EEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHH
Confidence 33333
Q ss_pred --------------------------------------------------------------------------------
Q 047260 614 -------------------------------------------------------------------------------- 613 (784)
Q Consensus 614 -------------------------------------------------------------------------------- 613 (784)
T Consensus 285 Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~ 364 (888)
T KOG0306|consen 285 KKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRT 364 (888)
T ss_pred HHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccc
Confidence
Q ss_pred ----------------------------CCeEEEEeCCCCeeEEeec-CCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260 614 ----------------------------DNEIQYWSINPFLCTHITK-GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD 664 (784)
Q Consensus 614 ----------------------------dg~I~iwDl~~~~~~~~~~-~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~ 664 (784)
++.|++|+..+.+|++.+. +-+.+..|.|.++++++|...|.+.+||+...
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 4555555555555555554 23444556666666666666777777777666
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC-----Cc--eEEEec-----cCCCceEEEEEecCCCEEE
Q 047260 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS-----GE--CIQELS-----SNGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t-----~~--~i~~l~-----~~~~~I~sl~fspdg~~L~ 731 (784)
..+..+..|.+.|.+++.+||++.+++++.| +|++||+.- +. .+-.+. .-...|.|+.++||+++|+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 6666677899999999999999999999966 999999742 21 111111 2246799999999999999
Q ss_pred EEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 732 VVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 732 s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
++--|.+|+||-+++-+.. .+.+|.-+|.|+..+||+++++|||.|..|+||
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 9999999999999998876 899999999999999999999999999999999
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.7e-28 Score=262.06 Aligned_cols=272 Identities=18% Similarity=0.299 Sum_probs=239.8
Q ss_pred ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260 443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL 522 (784)
Q Consensus 443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L 522 (784)
++.+.|. +.++.++-+.|+|.+|+.... ..++.+.-.+-+|.++.|-+..+++
T Consensus 18 sVd~HPt-ePw~la~LynG~V~IWnyetq--------------------------tmVksfeV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 18 SVDFHPT-EPWILAALYNGDVQIWNYETQ--------------------------TMVKSFEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred eeecCCC-CceEEEeeecCeeEEEecccc--------------------------eeeeeeeecccchhhheeeeccceE
Confidence 3444343 334446778999999977332 2455566677789999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcC
Q 047260 523 ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP 602 (784)
Q Consensus 523 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp 602 (784)
++|++|..|+||+.++++.+..|..|.+.|.||+.+|...+++|+|+|-+|++||.+..-.+..++.+|..-|.+++|+|
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP 150 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999988788999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCE
Q 047260 603 KKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRI--GQLLAAASDKVVSIFDIETDRQTHSLQGHAELV 677 (784)
Q Consensus 603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~--~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V 677 (784)
.+...|++++-|++|++|.+....+.. .+..+|+|+.|-+.+ .+|++|+.|.+|+|||..+..++.++.+|...|
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 999999999999999999998755544 455789999997754 589999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260 678 NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL 741 (784)
Q Consensus 678 ~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I 741 (784)
..++|+|.-.++++|++| +++||...+-+...++.-....++|++..+.+..+++|.++|.|.+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999976 9999999999888888888889999999999888888888776543
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.2e-29 Score=252.34 Aligned_cols=277 Identities=22% Similarity=0.348 Sum_probs=241.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC--------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE--------DHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~--------~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
..+.+.|..|||||.||++|+.||.|.|||..+++..+.++ -+..+|.|+.|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 44568899999999999999999999999999988766543 4788999999999999999999999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCC
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
+.++....+.-..|...|+|+.|+.|+. -+.+++.|.++++.-+.+++++..+.+ -++...|.++|.+++++++||
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 9998844444458999999999999987 566788999999999999999887775 467888999999999999999
Q ss_pred cEEEEECCCCeEEEEEeC--CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEeCCCCceEEEecc---CCCceEEEEEecCC
Q 047260 655 VVSIFDIETDRQTHSLQG--HAELVNYICWDTN-GDYLASVS-QNLVKVWSMASGECIQELSS---NGNQFHSCVFHPSY 727 (784)
Q Consensus 655 ~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spd-g~~Lasgs-dd~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg 727 (784)
+|++|+.++.+++.+|+. ...+|+++..-|. ...+++|. .++|+|.++. |..++.+.. .++...+++.+|.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 999999999999998875 4457888887774 45566665 4599999874 667777754 35678899999999
Q ss_pred CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 728 ~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.++++.+.|+.++.|.+.+++.. ++..|+..|..++.+|..++|++-+.||.+++|+
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999877 7778999999999999999999999999999996
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=252.73 Aligned_cols=242 Identities=18% Similarity=0.403 Sum_probs=220.9
Q ss_pred CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618 (784)
Q Consensus 539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~ 618 (784)
.+..+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++. +..++.+|...|..+++++..+ ++++++.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCc-eEEEecCCCeeE
Confidence 46667788999999999999999999999999999999999977 7788899999999999999888 566788899999
Q ss_pred EEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260 619 YWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN 695 (784)
Q Consensus 619 iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd 695 (784)
.||++..+.++.+. ..|.++..+|.-..|++++.|.+++|||+++...+..+.+|..+|..+.+.|-...+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 99999887776554 568899999999999999999999999999999999999999999999999988888888866
Q ss_pred -eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEE
Q 047260 696 -LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVAS 773 (784)
Q Consensus 696 -~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaS 773 (784)
+|++||++.|+...++..|...|.+++.+|....+++++.| .|+-|++..+..+ .+.+|...|++++...|+ ++++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 99999999999999999999999999999999888887777 5999999999877 678999999999988775 8889
Q ss_pred EECCCcEEEeC
Q 047260 774 ASHDSSVKLWK 784 (784)
Q Consensus 774 gs~DG~V~IWd 784 (784)
|++.|.+.+||
T Consensus 377 G~dng~~~fwd 387 (460)
T KOG0285|consen 377 GGDNGSIMFWD 387 (460)
T ss_pred cCCceEEEEEe
Confidence 99999999997
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.3e-28 Score=249.42 Aligned_cols=272 Identities=19% Similarity=0.349 Sum_probs=232.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC---EEEEEeCCCeEEEEcCCCCc
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS---QLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~---~Latgs~Dg~I~IWdl~~~~ 582 (784)
|.+.|.++... +++|++|+.||.++|||.. |+....+.+|.++|.+++|.-... .|++++.|.++++|.++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 89999999887 7799999999999999987 888999999999999988876333 59999999999999988765
Q ss_pred ce---eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----------------------------CeeEEee
Q 047260 583 FC---SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----------------------------FLCTHIT 631 (784)
Q Consensus 583 ~~---~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----------------------------~~~~~~~ 631 (784)
.. .....||...|.++...+++. .+++++.|..|++|+... ...+..|
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 32 233459999999999999987 899999999999999321 0112223
Q ss_pred cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC---ce
Q 047260 632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG---EC 707 (784)
Q Consensus 632 ~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~---~~ 707 (784)
..+|..|.|++ ...+++++-|.+|+.||++++..+..+. ....++|+..+|..++|++|+.+ .|++||.+++ -.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 46788888988 6889999999999999999999888877 46678999999999999999866 9999999986 35
Q ss_pred EEEeccCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCCc-e-EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 708 IQELSSNGNQFHSCVFHPSYST-LLVVGGISSLELWNMAENK-S-MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 708 i~~l~~~~~~I~sl~fspdg~~-L~s~s~dg~I~Iwdl~~~~-~-~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
...|.+|.+.|.+|.|+|...+ |++++.|+++++||+++.+ . ..+.+|.+.|.++.|.. +.+|++|+.|..|+|++
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEec
Confidence 6788899999999999998866 7788899999999999876 3 48889999999999984 66999999999999974
No 51
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.3e-29 Score=259.68 Aligned_cols=282 Identities=22% Similarity=0.359 Sum_probs=243.9
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL 575 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I 575 (784)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3445678899999999999998899999999999999997655 67778888899999999999999999999999999
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD 653 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D 653 (784)
|++.... ...++.+|.+.|+++.|.-.... +++++.|.+|+.||+....|....- ..+..|+.. ...++++..|
T Consensus 246 Wnvd~~r-~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~D 321 (459)
T KOG0288|consen 246 WNVDSLR-LRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFD 321 (459)
T ss_pred eeccchh-hhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccc
Confidence 9999866 77889999999999999876553 8999999999999999988876655 334445544 4567788889
Q ss_pred CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccC----CCceEEEEEecCCC
Q 047260 654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSN----GNQFHSCVFHPSYS 728 (784)
Q Consensus 654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~----~~~I~sl~fspdg~ 728 (784)
+.|++||++...+......+. .|+++..++++..|.+++ ||++.+.|+++......+... ....+.+.|+|++.
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999999999999999988665 999999999999888888 559999999999888887643 34578999999999
Q ss_pred EEEEEECCCeEEEEECCCCceEE-ecc-cCC-ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 729 TLLVVGGISSLELWNMAENKSMT-IAA-HEN-IISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 729 ~L~s~s~dg~I~Iwdl~~~~~~~-~~~-h~~-~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+++|+.||.|+||++.++++.. +.. +.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999998873 332 222 699999999999999999999999994
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.7e-27 Score=237.99 Aligned_cols=282 Identities=19% Similarity=0.318 Sum_probs=241.1
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC--CCeEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV--DKSVRL 575 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~--Dg~I~I 575 (784)
+..+.++.-.+.|+++.|+++|.+|++++.|..|+|||..+++.++++..++..|..++|......++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344555667889999999999999999999999999999999999999999999999999987777777776 889999
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-CCeeEEEEecCCCEEEEEECCC
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-GGTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-~~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
.++.+.+ .++.+.||...|.+|+.+|-+ ..|++++.|++|++||++..+|...+. .....++|.|.|-.++++...+
T Consensus 85 Lsl~dNk-ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNK-YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCc-eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence 9999877 788999999999999999988 488899999999999999888876666 4455678999998888888878
Q ss_pred cEEEEECCCC--eEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCce---EEEEEec
Q 047260 655 VVSIFDIETD--RQTHSLQ---GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQF---HSCVFHP 725 (784)
Q Consensus 655 ~I~IwDl~t~--~~i~~l~---~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I---~sl~fsp 725 (784)
.|++||++.- .+..++. +.....+.+.|+|||++|+.+.++ .+++.|.-+|..+.++..+...- ...+|.|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999874 3444443 346688999999999999888866 99999999999998887664432 6889999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceE-Eecc-cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 726 SYSTLLVVGGISSLELWNMAENKSM-TIAA-HENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~-h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
|++++++++.||+|++|+++++..+ .+.+ +.+++.++.|+|.-.++++++. .+.+|
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 9999999999999999999999887 5555 7899999999998877777654 56666
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.2e-29 Score=254.59 Aligned_cols=263 Identities=21% Similarity=0.400 Sum_probs=222.4
Q ss_pred CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260 450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR 529 (784)
Q Consensus 450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg 529 (784)
++.+ ..|..|.++++|+..+-. .+..+.||++.|.|+.|. .+.|++|+.|.
T Consensus 207 D~ki-VSGlrDnTikiWD~n~~~--------------------------c~~~L~GHtGSVLCLqyd--~rviisGSSDs 257 (499)
T KOG0281|consen 207 DEKI-VSGLRDNTIKIWDKNSLE--------------------------CLKILTGHTGSVLCLQYD--ERVIVSGSSDS 257 (499)
T ss_pred chhh-hcccccCceEEeccccHH--------------------------HHHhhhcCCCcEEeeecc--ceEEEecCCCc
Confidence 3344 479999999999774433 345567899999999995 56999999999
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcE
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDL 607 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~l 607 (784)
+|+|||+++++++.++.+|.+.|..+.|+ ..++++++.|.+|.|||+..+. .+.+.+.||...|..+.|+.. +
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---y 332 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---Y 332 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---e
Confidence 99999999999999999999999999997 4599999999999999998765 245677899999999999754 8
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEE-ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 047260 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQVRF-QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG 686 (784)
Q Consensus 608 l~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~f-sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg 686 (784)
+++++.|.+|++|++.+.++++.+.++-..++. .-.++.+++|++|.+|++||++.|.+++.+++|+.-|.|+.|+ .
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~ 410 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--N 410 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--C
Confidence 999999999999999999999887766555543 3356778888899999999999999999999999999999995 5
Q ss_pred CEEEEEe-CCeEEEEeCCCCc---------eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 687 DYLASVS-QNLVKVWSMASGE---------CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 687 ~~Lasgs-dd~I~IwDl~t~~---------~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
+.+++|. ||+|+|||+..+. |+.++..|.+.|..+.|.. ..|++++.|.+|.|||..++..-
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence 5677776 6699999998753 5666777888999999854 47999999999999999876543
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.8e-27 Score=232.23 Aligned_cols=282 Identities=20% Similarity=0.352 Sum_probs=225.9
Q ss_pred CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEe-ecCCCceEE
Q 047260 434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCI-RSRNSKVTC 512 (784)
Q Consensus 434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l-~~H~~~V~~ 512 (784)
..++....+.....+....++++++.|..|++|...... . +.....+ .+|+..|.+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---s--------------------~~ck~vld~~hkrsVRs 66 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---S--------------------WTCKTVLDDGHKRSVRS 66 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---c--------------------EEEEEeccccchheeee
Confidence 344444566677766657788899999999999774411 1 2222222 369999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC--cceeeec
Q 047260 513 CHFSSDGKLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP--NFCSQAY 588 (784)
Q Consensus 513 l~fspdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~--~~~~~~~ 588 (784)
++|+|.|++||+|+.|.++.||.-. +.+++.++++|...|.|++|+++|++||+|+.|+.|-||.+... -.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999999876 46788999999999999999999999999999999999998843 3477889
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260 589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN---PFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIE 662 (784)
Q Consensus 589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~---~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~ 662 (784)
.+|...|..+.|+|... +|++++.|.+|++|+-. ...+...+. ..+.++.|++.|..|++++.|++|+||-..
T Consensus 147 ~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99999999999999865 99999999999999876 234555544 568899999999999999999999999866
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC------ceEE-EeccCCCceEEEEEecC-CCEEEEE
Q 047260 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG------ECIQ-ELSSNGNQFHSCVFHPS-YSTLLVV 733 (784)
Q Consensus 663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~------~~i~-~l~~~~~~I~sl~fspd-g~~L~s~ 733 (784)
+.-. ..|...++.+.|. +| .|++++ |+.|+||..... +.+. .-..|+..|+++.|.|. ...|+++
T Consensus 226 ~~~~----~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 226 TDLS----GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred cCcc----hhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 3211 1278899999998 44 555555 669999976643 1111 22468889999999995 6789999
Q ss_pred ECCCeEEEEECC
Q 047260 734 GGISSLELWNMA 745 (784)
Q Consensus 734 s~dg~I~Iwdl~ 745 (784)
+.||.|++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 999999999874
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=260.90 Aligned_cols=285 Identities=19% Similarity=0.292 Sum_probs=246.0
Q ss_pred eecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCce
Q 047260 431 MNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKV 510 (784)
Q Consensus 431 ~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V 510 (784)
+....++...++++.+.+....|+..++.|+.|++|++.++. .+++++.+|..+|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------~~lrtf~gH~k~V 261 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------RCLRTFKGHRKPV 261 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------------------------ceehhhhcchhhh
Confidence 344567778889999999888888899999999999987644 3678889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYT 589 (784)
Q Consensus 511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~ 589 (784)
.+++|+.+|..|++++.|+.|++||+++|+++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++ ++..+.
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd 339 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYD 339 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHH
Confidence 999999999999999999999999999999999884 45678999999988 899999999999999999987 788888
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-
Q 047260 590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD- 664 (784)
Q Consensus 590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~- 664 (784)
.|-+.|..|.|-+++. .+++.++|+.++||+.+....+... .....++..+|.++++++-+.|+.|.+|.+...
T Consensus 340 ~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 9999999999999987 6778888999999999865444322 245578899999999999999999999987543
Q ss_pred --eEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCC-CEEEEEECCCe
Q 047260 665 --RQTHSLQGHAE--LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSY-STLLVVGGISS 738 (784)
Q Consensus 665 --~~i~~l~~h~~--~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg-~~L~s~s~dg~ 738 (784)
...+.+++|.. .-..+.|||||++|++|+ ++.+.+||.++-+.+..+..|...+..+.|+|.. ..+++++-+|.
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL 498 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce
Confidence 22345666653 556689999999999998 4599999999999999999999999999999976 46899999999
Q ss_pred EEEEE
Q 047260 739 LELWN 743 (784)
Q Consensus 739 I~Iwd 743 (784)
|++||
T Consensus 499 Ikiwd 503 (503)
T KOG0282|consen 499 IKIWD 503 (503)
T ss_pred eEecC
Confidence 99996
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2.4e-27 Score=238.86 Aligned_cols=280 Identities=18% Similarity=0.255 Sum_probs=234.9
Q ss_pred CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260 435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH 514 (784)
Q Consensus 435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~ 514 (784)
.++...+-...|.++.. ++++|+.|.-|.+|.+..+- .....+++|.+.|..+.
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdc-------------------------eN~~~lkgHsgAVM~l~ 97 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDC-------------------------ENFWVLKGHSGAVMELH 97 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccc-------------------------cceeeeccccceeEeee
Confidence 34455577778888554 45578899999999875433 13345679999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYTGHSS 593 (784)
Q Consensus 515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~ 593 (784)
|.+|+..|++++.|.+|+.||+++++.++.+++|...|+.+.-+..| .++.+++.||+++|||++... .++++. ...
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~ky 175 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKY 175 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cce
Confidence 99999999999999999999999999999999999999999855544 456778899999999999755 444443 356
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCC----eE
Q 047260 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD----RQ 666 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~----~~ 666 (784)
.++++.|...+. -+++|+-|+.|++||++......... ..|+.+..+++|.++++-+.|.+|++||++.. ++
T Consensus 176 qltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 176 QLTAVGFKDTSD-QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eEEEEEeccccc-ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 799999998776 56788899999999998877766655 67899999999999999999999999999853 45
Q ss_pred EEEEeCCCC----CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260 667 THSLQGHAE----LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL 741 (784)
Q Consensus 667 i~~l~~h~~----~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I 741 (784)
+..+.+|.. ....++|+|++.++.+++.+ .+++||.....++..+.+|...|+++.|+|....|++++.|.+|++
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 777776543 44567899999999999866 9999999999999999999999999999999999999999999987
Q ss_pred EE
Q 047260 742 WN 743 (784)
Q Consensus 742 wd 743 (784)
=.
T Consensus 335 ge 336 (338)
T KOG0265|consen 335 GE 336 (338)
T ss_pred ec
Confidence 43
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=252.52 Aligned_cols=278 Identities=19% Similarity=0.338 Sum_probs=232.5
Q ss_pred eEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
.-+..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 3467789999999999999976 6899999999999999999999999999999999999976 679999999999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEE-C
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAA-S 652 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s-~ 652 (784)
.++.+ ...++.+ .+.+..|+-+..+. .+++|+ ..|.|||......+..+. ..+.++.|+|....+++++ +
T Consensus 135 k~~~~--p~~tilg-~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 135 KIDGP--PLHTILG-KSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eccCC--cceeeec-cccccccccccccc-cccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 98863 4444443 34566666554443 677775 468999997655555444 6688999999887766655 7
Q ss_pred CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEE
Q 047260 653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTL 730 (784)
Q Consensus 653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L 730 (784)
|+.|.+||++...+++.+. -.-.-+.|||+|.+..++++++| .++.||++.- .++..+.+|.+.|.++.|+|.|.-|
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999998887765 34456789999987788888888 9999999874 6788889999999999999999999
Q ss_pred EEEECCCeEEEEECCCCceEEec--ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 731 LVVGGISSLELWNMAENKSMTIA--AHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 731 ~s~s~dg~I~Iwdl~~~~~~~~~--~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++|+.|.+|+||.+..+....+. .--..|.|+.|+-|.++|++||+|+.|++|+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999987665332 2334699999999999999999999999996
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.1e-26 Score=278.80 Aligned_cols=284 Identities=19% Similarity=0.296 Sum_probs=227.3
Q ss_pred CCCcccccccccCCCceEeccccCCcceeEEeecCC-CCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGG-DGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~-~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
+...+.++.|.++... +++|+.|+.|++|+..... +++ .... .+..+. +...|.+++|
T Consensus 482 ~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~------------------~~~~-~~~~~~-~~~~v~~l~~ 540 (793)
T PLN00181 482 SSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR------------------DIHY-PVVELA-SRSKLSGICW 540 (793)
T ss_pred CCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc------------------cccc-ceEEec-ccCceeeEEe
Confidence 4566777888777654 4568899999999753210 000 0000 111222 3568999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260 516 SS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS 593 (784)
Q Consensus 516 sp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~ 593 (784)
++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+.++. ....+..+ .
T Consensus 541 ~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~ 618 (793)
T PLN00181 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-A 618 (793)
T ss_pred ccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-C
Confidence 88 578999999999999999999999999999999999999997 78999999999999999998866 44445443 6
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC------
Q 047260 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET------ 663 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t------ 663 (784)
.|.++.|++....++++|+.|+.|++||++... .+..+...+.++.|. ++..|++++.|+.|++||++.
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 799999977666689999999999999998643 223355778999997 678999999999999999974
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe-------------ccCCCceEEEEEecCCCE
Q 047260 664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL-------------SSNGNQFHSCVFHPSYST 729 (784)
Q Consensus 664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l-------------~~~~~~I~sl~fspdg~~ 729 (784)
..++..+.+|...+.+++|++++.+|++|+++ .|+||+......+..+ ..+...|.+++|+|++..
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 35778899999999999999999999999965 9999998766544322 223456999999999999
Q ss_pred EEEEECCCeEEEEEC
Q 047260 730 LLVVGGISSLELWNM 744 (784)
Q Consensus 730 L~s~s~dg~I~Iwdl 744 (784)
|++++.+|.|+||++
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 999999999999996
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=248.54 Aligned_cols=282 Identities=16% Similarity=0.259 Sum_probs=233.9
Q ss_pred CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260 439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD 518 (784)
Q Consensus 439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd 518 (784)
.-+|-..|+.++ ++++++|.|.+..+|.+..+. .+...+++.+|..+|..+.||||
T Consensus 225 dEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~-----------------------~~kl~~tlvgh~~~V~yi~wSPD 280 (519)
T KOG0293|consen 225 DEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV-----------------------HFKLKKTLVGHSQPVSYIMWSPD 280 (519)
T ss_pred CcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc-----------------------ceeeeeeeecccCceEEEEECCC
Confidence 334555564444 455678899999999775443 25677889999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCC-CCCeE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGH-SSPIM 596 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~ 596 (784)
.++|++|+.|..+.+||+.++.....+. +|...+.+++|.|||..+++|+.|++|..||++... .....+- .-.|.
T Consensus 281 dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVH 358 (519)
T ss_pred CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeE
Confidence 9999999999999999999999887774 346889999999999999999999999999998643 3333332 24699
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC
Q 047260 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA 674 (784)
Q Consensus 597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~ 674 (784)
+++..+||..+++++ .|..|++++.++..+. .....++++++++.+++++++.-.+..|.+||++..+.+..+.+|.
T Consensus 359 dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk 437 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK 437 (519)
T ss_pred EEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence 999999999776655 6999999999876554 3345789999999999999999999999999999889999998887
Q ss_pred CC--EEEEEEcC-CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCC
Q 047260 675 EL--VNYICWDT-NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 675 ~~--V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~ 747 (784)
.. |-.-||.- +..++++|++| .|+||+..+++++.++.+|...|++++|+|..+ +++++++||+|+||.....
T Consensus 438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 63 44446654 55899999977 999999999999999999999999999999775 5888999999999987643
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-27 Score=261.53 Aligned_cols=277 Identities=19% Similarity=0.350 Sum_probs=233.1
Q ss_pred CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260 439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD 518 (784)
Q Consensus 439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd 518 (784)
+.+....|.|... ++.++--.|.+.+|+..-. ..+..|.+|+++|..++|+|.
T Consensus 10 sRvKglsFHP~rP-wILtslHsG~IQlWDYRM~--------------------------tli~rFdeHdGpVRgv~FH~~ 62 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMG--------------------------TLIDRFDEHDGPVRGVDFHPT 62 (1202)
T ss_pred ccccceecCCCCC-EEEEeecCceeeeehhhhh--------------------------hHHhhhhccCCccceeeecCC
Confidence 3344555655443 4446778889999976322 245567889999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
..++++||+|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+|+||+..+.+ ++..+.||...|.|.
T Consensus 63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcA 141 (1202)
T KOG0292|consen 63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCA 141 (1202)
T ss_pred CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999876 889999999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCe--------------------------------eEEeecCCeeEEEEecCCCE
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFL--------------------------------CTHITKGGTAQVRFQPRIGQ 646 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~--------------------------------~~~~~~~~v~~v~fsp~~~~ 646 (784)
.|+|... ++++++-|.+|+|||+...+ .+..+..+|+-++|+|.-..
T Consensus 142 qFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 142 QFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 9999865 89999999999999985211 01112356778899999999
Q ss_pred EEEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260 647 LLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF 723 (784)
Q Consensus 647 Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~f 723 (784)
|++|+.|..|++|.+...+ .+-+..+|.+.|.++-|+|...++++.++| +|+|||+...+.+.++.......+.++.
T Consensus 221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laa 300 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAA 300 (1202)
T ss_pred EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEe
Confidence 9999999999999987654 344567899999999999999999999977 9999999999999999988899999999
Q ss_pred ecCCCEEEEEECCCeEEEEECC
Q 047260 724 HPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 724 spdg~~L~s~s~dg~I~Iwdl~ 745 (784)
+|..+.+++|. |+.+.+|.+.
T Consensus 301 hP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 301 HPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred cCCcceeeeec-CCceEEEEEc
Confidence 99998655554 4445555554
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=266.19 Aligned_cols=247 Identities=18% Similarity=0.322 Sum_probs=207.1
Q ss_pred ceeEEeEee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------------------------
Q 047260 496 TFCEVGCIR-SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT------------------------------------ 538 (784)
Q Consensus 496 ~~~~i~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t------------------------------------ 538 (784)
.+.....+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 344555566 8999999999999999999999999999997643
Q ss_pred ------------------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260 539 ------------------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP 594 (784)
Q Consensus 539 ------------------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~ 594 (784)
.++++.+.+|.+.|.+|.|+.+ .+|++++.|++||+|++.... |+..| .|.+-
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F-~Hndf 411 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVF-SHNDF 411 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEE-ecCCe
Confidence 0233445689999999999965 489999999999999999755 77766 59999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG 672 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~ 672 (784)
|+||+|+|.+..+|++|+-||.|+||++...+.+.-. +.-|++++|.|+|...++|+.+|.+++|+.+..+....+.-
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999999999999999999999999887776544 47799999999999999999999999999998776655431
Q ss_pred --C------CCCEEEEEEcCCC--CEEEEEeCCeEEEEeCCCCceEEEeccCCC--ceEEEEEecCCCEEEEEECCCeEE
Q 047260 673 --H------AELVNYICWDTNG--DYLASVSQNLVKVWSMASGECIQELSSNGN--QFHSCVFHPSYSTLLVVGGISSLE 740 (784)
Q Consensus 673 --h------~~~V~sl~~spdg--~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~--~I~sl~fspdg~~L~s~s~dg~I~ 740 (784)
| ...|+.+.|.|.. ++|++..|..|+|||.++..++..|++..+ .-....|+.||++|++++.|..|+
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 1 2279999998743 366766677999999999999999886533 335678999999999999999999
Q ss_pred EEECC
Q 047260 741 LWNMA 745 (784)
Q Consensus 741 Iwdl~ 745 (784)
||++.
T Consensus 572 iW~~~ 576 (712)
T KOG0283|consen 572 IWKND 576 (712)
T ss_pred EEeCC
Confidence 99974
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=246.40 Aligned_cols=274 Identities=18% Similarity=0.265 Sum_probs=239.4
Q ss_pred CCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 506 RNSKVTCCHFSSDGKL-LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 506 H~~~V~~l~fspdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
-.+.|.+++|+|...+ +|+.+ .-.|.||+..+....+++......|.++.|..||++|++|...|.|+|||+.+ +..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence 3467999999995543 44444 34699999999888888888899999999999999999999999999999655 557
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCCC-EEEEEECCCcEEEEE
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRIG-QLLAAASDKVVSIFD 660 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwD 660 (784)
++.+.+|..+|..+.|+|.+..++++|++|+.+++||+.+..... .++.-|.|.+|+|... .+++|+.||.|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 888999999999999999999999999999999999999876532 3446788999999866 566778899999999
Q ss_pred CCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260 661 IETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS 738 (784)
Q Consensus 661 l~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~ 738 (784)
++.. ..+.++. |..+|..+++-|.|..|++++.+.|+|||+.+| +.+..+..|...|+|+.+..++..|++++-|+.
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 9987 5666665 999999999999999999999999999999965 556666669999999999999999999999999
Q ss_pred EEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 739 LELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 739 I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
|++||+.+.+.+.-..-.++|.+++.+|++..++.|-.||.+.+
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 99999988888877788999999999999999999999998754
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.2e-26 Score=267.27 Aligned_cols=278 Identities=21% Similarity=0.343 Sum_probs=237.2
Q ss_pred cCCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260 505 SRNSKVTCCHFSSDGKLLASSG--HDRKVVLWNMDT------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs--~Dg~I~IWd~~t------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~D 570 (784)
+++..|.+++.+|||..+|||+ .||.++||+.+. .+.+.....|.+.|+|+.|++||.+||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3556799999999999999999 999999998752 23445667899999999999999999999999
Q ss_pred CeEEEEcCCC------Cc-----------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-
Q 047260 571 KSVRLWDAAN------PN-----------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK- 632 (784)
Q Consensus 571 g~I~IWdl~~------~~-----------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~- 632 (784)
+.|.||+... .. .+...+.+|+..|..++|+|++. ++++++.|+.|.+|+..+++++..++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 00 15567889999999999999876 99999999999999999987776655
Q ss_pred --CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCCCEEEEEe--C-C--eEEE
Q 047260 633 --GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH------AELVNYICWDTNGDYLASVS--Q-N--LVKV 699 (784)
Q Consensus 633 --~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h------~~~V~sl~~spdg~~Lasgs--d-d--~I~I 699 (784)
+.|..+.|.|-|++|++-+.|++|+||++.+....+.+.++ ...+..+.|+|||.+|++.. . + ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 66888999999999999999999999998877777777653 33678899999999999865 2 2 8999
Q ss_pred EeCCCCceEEEeccCCCceEEEEEecC-------------CC----EEEEEECCCeEEEEECCCCceEEec--ccCCceE
Q 047260 700 WSMASGECIQELSSNGNQFHSCVFHPS-------------YS----TLLVVGGISSLELWNMAENKSMTIA--AHENIIS 760 (784)
Q Consensus 700 wDl~t~~~i~~l~~~~~~I~sl~fspd-------------g~----~L~s~s~dg~I~Iwdl~~~~~~~~~--~h~~~V~ 760 (784)
.+-.+.+.-..|-+|..++.++.|+|. .. .+++|+.|++|.||.....+++.+. -....|.
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 999888988999999999999999872 11 5788899999999999777776333 3467899
Q ss_pred EEEEeCCCCEEEEEECCCcEEEe
Q 047260 761 ALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 761 slafspdg~~LaSgs~DG~V~IW 783 (784)
+++|+|||..|+.||.||+|.+.
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEE
Confidence 99999999999999999999875
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=226.33 Aligned_cols=276 Identities=22% Similarity=0.280 Sum_probs=238.6
Q ss_pred CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
.....+.++.+..+....++.| .|.+|++|+...+ ..++++.+|...|..++.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcG-sdrtvrLWNp~rg--------------------------~liktYsghG~EVlD~~~ 67 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCG-SDRTVRLWNPLRG--------------------------ALIKTYSGHGHEVLDAAL 67 (307)
T ss_pred ccccceEEEEEccCCCEEEEcC-CCceEEeeccccc--------------------------ceeeeecCCCceeeeccc
Confidence 3344566778888888888655 7999999976443 367889999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-ceeeeccCCCCC
Q 047260 516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-FCSQAYTGHSSP 594 (784)
Q Consensus 516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~~~h~~~ 594 (784)
+.|...|++|+.|..|.+||+++++.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. .++.++....+.
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998744 366777777889
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h 673 (784)
|.+|.... ..+++|+.||+++.||++.+.... .+..+|++++|+++++..++++.|++|++.|-++++.+..+++|
T Consensus 148 V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 148 VSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred eeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 99999874 378899999999999999877654 45688999999999999999999999999999999999999998
Q ss_pred CCCE--EEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc-eEEEEEecCCCEEEEEECCCeEEEE
Q 047260 674 AELV--NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQ-FHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 674 ~~~V--~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~-I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
...- ...+++.....+++|++| .|++||+.....+..+..+... |.++.++|.-..++++...+ +.+|
T Consensus 225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 8744 345677778889999976 9999999999999999888777 89999999988888777654 4444
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.5e-27 Score=229.91 Aligned_cols=274 Identities=22% Similarity=0.354 Sum_probs=225.1
Q ss_pred EEEEEcC-CCCEEEEEe-------CCCeEEEEECCCCceeeecC--CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCC
Q 047260 511 TCCHFSS-DGKLLASSG-------HDRKVVLWNMDTLQTESTPE--DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 511 ~~l~fsp-dg~~Lasgs-------~Dg~I~IWd~~t~~~~~~l~--~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~ 579 (784)
.++.||| -.++||++. ..|++.|.++...+-+..+. .-.+.+.+++|++ ..+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5678998 233444432 46889999996444443332 4567899999999 55688999999999999988
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecCC-CEEEEEECCCc
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPRI-GQLLAAASDKV 655 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~-~~Ll~~s~Dg~ 655 (784)
.+..++..++.|..+|.++.|++..+..+++++.|++|++|+.+....+..+.++ |....|+|.. +.+++++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 7777899999999999999999999989999999999999999987777777654 5667899965 55667778999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEeCCCC-ceEEEeccCCCceEEEEEecCC-CEEE
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDT-NGDYLASVS-QNLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSY-STLL 731 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~sp-dg~~Lasgs-dd~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg-~~L~ 731 (784)
+++||++.......+..|...|.|+.|+. +.+.|++++ |+.|++||+++- .++.++.+|.-.|..++|+|.. ..|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999987655555889999999999998 455677777 449999999985 5789999999999999999976 4578
Q ss_pred EEECCCeEEEEECCCCceE--EecccCCceEEEEEeC-CCCEEEEEECCCcEEEeC
Q 047260 732 VVGGISSLELWNMAENKSM--TIAAHENIISALAQSP-VTGMVASASHDSSVKLWK 784 (784)
Q Consensus 732 s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafsp-dg~~LaSgs~DG~V~IWd 784 (784)
+++.|-+++|||...+... +...|...|..+.|++ +..++|+++.|+.++||+
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 8888999999998855433 6668999999999997 456999999999999996
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=246.73 Aligned_cols=290 Identities=14% Similarity=0.230 Sum_probs=232.6
Q ss_pred CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeec-CCCCCCeEEEEEccCCCEEEEEe
Q 047260 494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----QTESTP-EDHKSVVTDVRFRPNSSQLATAS 568 (784)
Q Consensus 494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l-~~h~~~It~i~fspdg~~Latgs 568 (784)
.++......+++|+..|.++++.|.|..|++|+.|..|++||+... +..+.+ ......|.++.|++.+..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3455556678999999999999999999999999999999998732 222222 23446799999999999999999
Q ss_pred CCCeEEEEcCCCCcce-----------eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEeec----
Q 047260 569 VDKSVRLWDAANPNFC-----------SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTHITK---- 632 (784)
Q Consensus 569 ~Dg~I~IWdl~~~~~~-----------~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~~~~---- 632 (784)
....++|+|-+..... .....||...++|.+|+|.....|++|+.||++++||++..+ .+.+++
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 8899999997653321 122458999999999999999999999999999999998533 222221
Q ss_pred ----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEE-EeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEeC
Q 047260 633 ----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHS-LQGHAE--LVNYICWDTNGDYLASVS-QNLVKVWSM 702 (784)
Q Consensus 633 ----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~-l~~h~~--~V~sl~~spdg~~Lasgs-dd~I~IwDl 702 (784)
-.++.++|++++..|++|+.||.|.+||..... +... -..|.. .|+||.|+++|++|++-+ |+++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 457889999999999999999999999986542 2222 245777 999999999999999977 559999999
Q ss_pred CCC-ceEEEeccC--CCceEEEEEecCCCEEEEEEC------CCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEE
Q 047260 703 ASG-ECIQELSSN--GNQFHSCVFHPSYSTLLVVGG------ISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVA 772 (784)
Q Consensus 703 ~t~-~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~------dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~La 772 (784)
+.. +++.+..+- ..+-+.|+|+|+.+.|++|+. .|.+.+||..+...+ .+......|..+.|+|.=+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 975 566655443 234588999999999999876 368999999887766 5666678899999999988899
Q ss_pred EEECCCcEEEe
Q 047260 773 SASHDSSVKLW 783 (784)
Q Consensus 773 Sgs~DG~V~IW 783 (784)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=241.02 Aligned_cols=274 Identities=20% Similarity=0.340 Sum_probs=244.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA 587 (784)
Q Consensus 508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~ 587 (784)
..|+++...+....++||+.|..+.++|..+...+..+++|...|+.+.|+++...+++++.|..|+||...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 458888888887899999999999999999999999999999999999999999999999999999999998765 6667
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC-----CeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260 588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG-----GTAQVRFQPRIGQLLAAASDKVVSIFDIE 662 (784)
Q Consensus 588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~-----~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~ 662 (784)
...|..+|+.+..+|.+. +|++++.|++..+.|++++.++..... .+++..|+|||-.|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 788999999999999998 666788899999999999888766554 37889999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCeEE
Q 047260 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLE 740 (784)
Q Consensus 663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~ 740 (784)
....+..|.+|.++|..|.|+.+|.||++++++ .|++||++.-+...++.... ..+.++.|...|.+|+.++.|=.|+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 999999999999999999999999999999988 79999999988777776443 4799999999999999998876777
Q ss_pred EEECCCCc--eE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 741 LWNMAENK--SM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 741 Iwdl~~~~--~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
+++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77654433 33 566788899999999999999999999999886
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=261.50 Aligned_cols=267 Identities=25% Similarity=0.462 Sum_probs=237.3
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF 583 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~ 583 (784)
.|...|.|..|. +.++++++.|.+|++||..++..+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 367789999998 55899999999999999999999888 99999999999998878899999999999999998877
Q ss_pred eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD 660 (784)
+...+.+|.+.|.++...+. ++++|+.|..|++|++.+..++..+. +.|.++.++ +..+++|+.|++|++||
T Consensus 283 C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 88999999999999988644 78889999999999999988877665 567777776 78999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS 738 (784)
Q Consensus 661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~ 738 (784)
+.++++++++.+|...|.++.+... .++++|+-| +|++||+++. +|+.++.+|..-+..+.+ .+++|++++.|++
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence 9999999999999999999988766 788888855 9999999999 999999999888866655 4558999999999
Q ss_pred EEEEECCCCceE-Eecc-cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 739 LELWNMAENKSM-TIAA-HENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 739 I~Iwdl~~~~~~-~~~~-h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|++||..+++++ .+.+ |.+.|.++++. ...+++++.||.+++||
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999988 4555 56889998877 46788999999999997
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-26 Score=251.74 Aligned_cols=268 Identities=22% Similarity=0.409 Sum_probs=231.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~ 589 (784)
..-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+ ....+.
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-~~~~~~ 256 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-KTRTLR 256 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-cccccc
Confidence 3446777 344677665 4569999999998777666668999999999999999999999999999999876 444555
Q ss_pred C-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260 590 G-HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD 664 (784)
Q Consensus 590 ~-h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~ 664 (784)
+ |...|.+++|. ..++.+|+.++.|.++|++.... ...+...|+.+.|++++.++++|+.|+.|.|||....
T Consensus 257 ~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 257 GSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 5 99999999998 34889999999999999986433 4456788999999999999999999999999999888
Q ss_pred eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC--Ce
Q 047260 665 RQTHSLQGHAELVNYICWDT-NGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI--SS 738 (784)
Q Consensus 665 ~~i~~l~~h~~~V~sl~~sp-dg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d--g~ 738 (784)
.+...+..|.+.|..++|+| ...+||+|+ |..|++||..+++.+..+.. ...|..+.|++..+-|+++.+. +.
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 99999999999999999999 456788776 44999999999999988854 4789999999999888877654 58
Q ss_pred EEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 739 LELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 739 I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|.||++.+.+.+ .+.+|..+|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999987776 7889999999999999999999999999999996
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=237.96 Aligned_cols=281 Identities=20% Similarity=0.329 Sum_probs=240.1
Q ss_pred ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260 441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK 520 (784)
Q Consensus 441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~ 520 (784)
+-...|.+|...++ +||.||-+++|+...+.-.+. +.+.--..|--|+..|.|++||.|..
T Consensus 216 ~EcA~FSPDgqyLv-sgSvDGFiEVWny~~GKlrKD------------------LkYQAqd~fMMmd~aVlci~FSRDsE 276 (508)
T KOG0275|consen 216 VECARFSPDGQYLV-SGSVDGFIEVWNYTTGKLRKD------------------LKYQAQDNFMMMDDAVLCISFSRDSE 276 (508)
T ss_pred hhheeeCCCCceEe-eccccceeeeehhccchhhhh------------------hhhhhhcceeecccceEEEeecccHH
Confidence 34455667666555 799999999998866552222 22233334556899999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260 521 LLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599 (784)
Q Consensus 521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~ 599 (784)
.||+|+.||+|+||.+.++.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+++++ +.+.+.+|.+.|....
T Consensus 277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEAT 355 (508)
T ss_pred HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceE
Confidence 99999999999999999999999997 899999999999999999999999999999999987 8889999999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeC-
Q 047260 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQG- 672 (784)
Q Consensus 600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~- 672 (784)
|.++|. .+++++.||+|++|+..+.+|+..++ .++..+..-|.. .+++++...++|+|.++. |+.++++..
T Consensus 356 ft~dG~-~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSG 433 (508)
T KOG0275|consen 356 FTDDGH-HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG 433 (508)
T ss_pred EcCCCC-eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence 999987 67788999999999999999988876 345666666654 567778889999999986 677777753
Q ss_pred --CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260 673 --HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 673 --h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd 743 (784)
..+...+.+.+|.|.++.+.++| .++.|...+|+..+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 34567778899999999998876 999999999999999999999999999999999999999999999995
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.9e-27 Score=228.95 Aligned_cols=249 Identities=16% Similarity=0.223 Sum_probs=223.7
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
.=+.+|.+|.+.|+.++++.+-...|+++.|-+.+|||.-++..+..+ .|..-|.+++|+.|.++|++|+.++.+||||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 347889999999999999999889999999999999999999999998 6999999999999999999999999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCc
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
+...+.....+.+|.+.|..+.|..... .|+++..|+.|++||.+++..+..+ +.+++++.++++|.+| +....+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~il-Tia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRIL-TIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEE-EEecCce
Confidence 9998888889999999999999988766 4555588999999999998887665 4889999999997755 4455689
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe-ccCCCceEEEEEecCCCEEEEE
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL-SSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l-~~~~~~I~sl~fspdg~~L~s~ 733 (784)
|.+||..+..+++.++ -...|.+..++|+..++++|+++ .++.||..+++.+..+ ++|.++|.|+.|+|+|...++|
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 9999999998888876 55678999999999999998887 9999999999999886 8999999999999999999999
Q ss_pred ECCCeEEEEECCCCceE
Q 047260 734 GGISSLELWNMAENKSM 750 (784)
Q Consensus 734 s~dg~I~Iwdl~~~~~~ 750 (784)
+.||+|+||.+..++..
T Consensus 286 SEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEEecCCCch
Confidence 99999999998776544
No 72
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.4e-25 Score=250.65 Aligned_cols=261 Identities=15% Similarity=0.215 Sum_probs=205.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-------------eecCCCCCCeEEEEEcc-CCCEEEEEeCCCe
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE-------------STPEDHKSVVTDVRFRP-NSSQLATASVDKS 572 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~-------------~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~ 572 (784)
-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 344566666667666666666666667765432211 23568999999999999 8899999999999
Q ss_pred EEEEcCCCCc------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecC
Q 047260 573 VRLWDAANPN------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPR 643 (784)
Q Consensus 573 I~IWdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~ 643 (784)
|+|||+.+.. .....+.+|...|.+++|+|++..+|++++.|+.|++||+++...+..+ ...+.+++|+|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 9999997643 2455678999999999999998779999999999999999987766554 467899999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEeCCCCc-eEEEeccC-C
Q 047260 644 IGQLLAAASDKVVSIFDIETDRQTHSLQGHAEL-VNYICWDTNGDYLASVS-----QNLVKVWSMASGE-CIQELSSN-G 715 (784)
Q Consensus 644 ~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~-V~sl~~spdg~~Lasgs-----dd~I~IwDl~t~~-~i~~l~~~-~ 715 (784)
+..|++++.|+.|+|||+++++.+..+.+|.+. +..+.|.+++..|++++ ++.|++||+++.. ++..+..+ .
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 999999999999999999999999999888764 45678999887777654 4599999998754 44444333 3
Q ss_pred CceEEEEEecCCCEEEEEE-CCCeEEEEECCCCceEEe--cccCCceEEEEEeCC
Q 047260 716 NQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKSMTI--AAHENIISALAQSPV 767 (784)
Q Consensus 716 ~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspd 767 (784)
..+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.
T Consensus 260 ~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 4556677899999998887 599999999999887633 245567788888875
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=226.74 Aligned_cols=289 Identities=13% Similarity=0.232 Sum_probs=231.8
Q ss_pred ccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 047260 456 VGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535 (784)
Q Consensus 456 ~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd 535 (784)
+|++...+.-|.....++ .......+++..+..+..|.+.|+|++.+ +.++|+|+.|-+|+|||
T Consensus 6 vGtYE~~i~Gf~l~~~~~--------------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYD 69 (362)
T KOG0294|consen 6 VGTYEHVILGFKLDPEPK--------------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYD 69 (362)
T ss_pred EeeeeeEEEEEEeccCcc--------------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEe
Confidence 577776666665533221 11123346677788899999999999996 88999999999999999
Q ss_pred CCCCceeeecCCCCCCeEEEEEccCCC--EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC
Q 047260 536 MDTLQTESTPEDHKSVVTDVRFRPNSS--QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN 613 (784)
Q Consensus 536 ~~t~~~~~~l~~h~~~It~i~fspdg~--~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~ 613 (784)
+.+...+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-. +...+.+|.+.|+.++.+|.+. +.++.+.
T Consensus 70 m~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~ 147 (362)
T KOG0294|consen 70 MRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGG 147 (362)
T ss_pred ccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCc-eEEEEcC
Confidence 999999999999999999999998664 89999999999999998864 8889999999999999999987 7778888
Q ss_pred CCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 047260 614 DNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLAS 691 (784)
Q Consensus 614 dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Las 691 (784)
|+.++.||+-.++.-... +...+.|.|+|.|.+++++.. ..|-||.+++.+....+. ....+.|+.|... .+|++
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~-~~L~v 224 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDG-SELLV 224 (362)
T ss_pred CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCC-ceEEE
Confidence 999999999876655443 345566999999999888776 568899988776665554 3356778888654 45555
Q ss_pred EeCC-eEEEEeCCCCceEEEeccCCCceEEEEE--ecCCCEEEEEECCCeEEEEECCCCc-----eEEecccCCceEEEE
Q 047260 692 VSQN-LVKVWSMASGECIQELSSNGNQFHSCVF--HPSYSTLLVVGGISSLELWNMAENK-----SMTIAAHENIISALA 763 (784)
Q Consensus 692 gsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~f--spdg~~L~s~s~dg~I~Iwdl~~~~-----~~~~~~h~~~V~sla 763 (784)
|.++ .|.+||..+..+...+..|...|.++.+ .|++.+|++++.||.|+|||++... .+.......+++|+.
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence 5555 9999999999999999999999999984 4678899999999999999998763 333334466677776
Q ss_pred Ee
Q 047260 764 QS 765 (784)
Q Consensus 764 fs 765 (784)
..
T Consensus 305 ~~ 306 (362)
T KOG0294|consen 305 VK 306 (362)
T ss_pred eh
Confidence 54
No 74
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.6e-25 Score=250.32 Aligned_cols=244 Identities=16% Similarity=0.214 Sum_probs=197.6
Q ss_pred EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCcc-------eeeeccCCCCCeE
Q 047260 525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPNF-------CSQAYTGHSSPIM 596 (784)
Q Consensus 525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~-------~~~~~~~h~~~V~ 596 (784)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|++|+|||+.+... ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999996 78999999999999999976431 2335678999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC
Q 047260 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA 674 (784)
Q Consensus 597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~ 674 (784)
+++|+|++..++++++.|+.|++||+++...... +...+.+++|+++|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9999999988889999999999999998765443 34678999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEeCCC-CceEEEeccC--CCceEEEEEecCCCEEEEEECCCeEEE
Q 047260 675 ELVNYI-----CWDTNGDYLASVS-QN----LVKVWSMAS-GECIQELSSN--GNQFHSCVFHPSYSTLLVVGGISSLEL 741 (784)
Q Consensus 675 ~~V~sl-----~~spdg~~Lasgs-dd----~I~IwDl~t-~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg~I~I 741 (784)
+.+.+. .|++++.+|++++ ++ .|+|||+++ .+++..+..+ .+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888766 32 699999995 5666555332 233333334556888899999999999
Q ss_pred EECCCCceEEe--cccCCceEEEEEeCCC
Q 047260 742 WNMAENKSMTI--AAHENIISALAQSPVT 768 (784)
Q Consensus 742 wdl~~~~~~~~--~~h~~~V~slafspdg 768 (784)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999974
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.7e-25 Score=231.51 Aligned_cols=265 Identities=17% Similarity=0.313 Sum_probs=222.6
Q ss_pred CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC---CEEEEEeC
Q 047260 451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG---KLLASSGH 527 (784)
Q Consensus 451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg---~~Lasgs~ 527 (784)
.+++.+|++|+.+++|+... ..+..+.+|.++|.+++|.-.. ..|++++.
T Consensus 115 ~~~IltgsYDg~~riWd~~G---------------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG---------------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CceEEEeecCCeeEEEecCC---------------------------ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 56677899999999996521 3567788999999988886533 36999999
Q ss_pred CCeEEEEECCCCce----eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC----------------------
Q 047260 528 DRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP---------------------- 581 (784)
Q Consensus 528 Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~---------------------- 581 (784)
|.++++|.++.++. +....+|...|-+|+..+++..+++|+.|.+|+||+..+.
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 99999999886543 3344599999999999999999999999999999993211
Q ss_pred --cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEE
Q 047260 582 --NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 582 --~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
+.+...+.+|..+|.++.|.+ ...+++++.|.+|+.||+.++.++.... ....++.++|....|++|+.|..|+
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred cccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence 113456779999999999998 3479999999999999999887776554 5688999999999999999999999
Q ss_pred EEECCCC---eEEEEEeCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEeCCCCc-eEEEeccCCCceEEEEEecCCCEEE
Q 047260 658 IFDIETD---RQTHSLQGHAELVNYICWDTNGDY-LASVS-QNLVKVWSMASGE-CIQELSSNGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 658 IwDl~t~---~~i~~l~~h~~~V~sl~~spdg~~-Lasgs-dd~I~IwDl~t~~-~i~~l~~~~~~I~sl~fspdg~~L~ 731 (784)
+||.+++ -....|.+|.+.|.++.|+|...+ |++++ |+++++||+++.+ ++..+.+|...|.++.|.. +..|+
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~Iv 404 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIV 404 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEE
Confidence 9999986 355678899999999999997665 56666 5599999999987 9999999999999999985 45799
Q ss_pred EEECCCeEEEEECC
Q 047260 732 VVGGISSLELWNMA 745 (784)
Q Consensus 732 s~s~dg~I~Iwdl~ 745 (784)
+|+.|.+|+|+.-.
T Consensus 405 SGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 405 SGGADNKLRIFKGS 418 (423)
T ss_pred eccCcceEEEeccc
Confidence 99999999998643
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-24 Score=205.19 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=232.7
Q ss_pred cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------ceeeecCCCCCCeEEEEEcc
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---------------QTESTPEDHKSVVTDVRFRP 559 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---------------~~~~~l~~h~~~It~i~fsp 559 (784)
..|..+..+. ....|.+++|+|.|.+.|+|+...+.+|...... ...+.-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 4566666554 5667999999999999999999999888754321 11223357999999999999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcc----eeeeccCCCCCeEEEEEcCC---CCcEEEEEe-CCCeEEEEeCCCCeeEEee
Q 047260 560 NSSQLATASVDKSVRLWDAANPNF----CSQAYTGHSSPIMSLDFHPK---KTDLFCFCD-NDNEIQYWSINPFLCTHIT 631 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~----~~~~~~~h~~~V~sl~~sp~---~~~ll~sgs-~dg~I~iwDl~~~~~~~~~ 631 (784)
+|.+|++|+.|++|++..+..... ....+.-|.+.|..++|..+ +..++++++ .|..|++-|...+...+.+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987654321 22346679999999999654 344666654 5778888888877766665
Q ss_pred cC---CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC--C-----CCCEEEEEEcCCCCEEEEEeCC-eEEEE
Q 047260 632 KG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG--H-----AELVNYICWDTNGDYLASVSQN-LVKVW 700 (784)
Q Consensus 632 ~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~--h-----~~~V~sl~~spdg~~Lasgsdd-~I~Iw 700 (784)
.+ ++..+ ++-++-.+++++.|.+|++||++-..++..+.. | ...|.+++..|.|++|++|-.+ ...+|
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 54 44433 334556788888899999999999888887642 2 3579999999999999999977 89999
Q ss_pred eCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-----eEEecccCCceEEEEEeCCCCEEEEEE
Q 047260 701 SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-----SMTIAAHENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 701 Dl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-----~~~~~~h~~~V~slafspdg~~LaSgs 775 (784)
|++.++.+..+..|...|.++.|+|...|+++++.|..|++-|+...- .+.+..|...+..+.|+|..-.+++.+
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence 999999999999999999999999999999999999999999987642 336678999999999999999999999
Q ss_pred CCCcEEEe
Q 047260 776 HDSSVKLW 783 (784)
Q Consensus 776 ~DG~V~IW 783 (784)
.|.++.+|
T Consensus 339 adkt~tlw 346 (350)
T KOG0641|consen 339 ADKTATLW 346 (350)
T ss_pred CcceEEEe
Confidence 99999999
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.5e-25 Score=220.60 Aligned_cols=267 Identities=16% Similarity=0.266 Sum_probs=216.0
Q ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC-Ccee-eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260 506 RNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDT-LQTE-STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 506 H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~ 582 (784)
-++.|.+|+||| ...+|+.++.||+||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 567799999999 555777899999999999986 3332 3445799999999999999999999999999999999875
Q ss_pred ceeeeccCCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260 583 FCSQAYTGHSSPIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI 661 (784)
Q Consensus 583 ~~~~~~~~h~~~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl 661 (784)
...+..|..+|.++.|-+... .+|++|+.|.+|++||.+....+....-+-.+-+..-....++++..+..|.+|++
T Consensus 106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 556678999999999987543 47899999999999999988887777655555555555567899999999999999
Q ss_pred CCCeEEE-EEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC--ceEEEeccCC---------CceEEEEEecCC
Q 047260 662 ETDRQTH-SLQ-GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG--ECIQELSSNG---------NQFHSCVFHPSY 727 (784)
Q Consensus 662 ~t~~~i~-~l~-~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~--~~i~~l~~~~---------~~I~sl~fspdg 727 (784)
+++.... .+. .-+-.++||+...|....+.|+ +|.+.|..+..+ +.-.+|+.|. ..|++++|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 8763322 111 1334678998888877667777 778888888776 4455666654 247889999999
Q ss_pred CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEE
Q 047260 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASA 774 (784)
Q Consensus 728 ~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSg 774 (784)
..|+++++||++.+||-.....+ ....|..+|++.+|+.+|.++|-+
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999999998887666 667899999999999999988765
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.9e-26 Score=246.61 Aligned_cols=268 Identities=22% Similarity=0.368 Sum_probs=233.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-ceeeecc
Q 047260 517 SDGKLLASSGHDRKVVLWNMDTLQ------TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-FCSQAYT 589 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~~ 589 (784)
|.++||+|||.||.|++|++.... ....++.|.+.|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 367789999999999999986422 366788999999999999999999999999999999998764 6888899
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EE------------eecCCeeEEEEecCCCEEEEEECCCc
Q 047260 590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--TH------------ITKGGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~------------~~~~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
.|.+.|.|+++-.....++++|+-|+.|.+||++++.. +. ..+..+.+++.++.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999555566999999999999999996522 11 22357888999999988999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s 734 (784)
|++||.++.+.+..+.+|...|.++..++||..+++++.| +|++||+...+|+.++..|...|+++..+|+-.++++|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence 9999999999999999999999999999999999888755 999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCC-ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 735 GISSLELWNMAEN-KSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 735 ~dg~I~Iwdl~~~-~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.||.|..=|+++. ++..+...+.+|..+..+...+-+-+++.|+.|+-|.
T Consensus 275 rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999984 4445666777888888776666667788899999884
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=8.8e-26 Score=235.71 Aligned_cols=273 Identities=22% Similarity=0.360 Sum_probs=231.2
Q ss_pred cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260 440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG 519 (784)
Q Consensus 440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg 519 (784)
-.-.+.|..+.+.|. +|..|..|.+|...... ...+.+|.+..+.|+++.|.+++
T Consensus 177 ev~~v~~l~~sdtla-tgg~Dr~Ik~W~v~~~k------------------------~~~~~tLaGs~g~it~~d~d~~~ 231 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLA-TGGSDRIIKLWNVLGEK------------------------SELISTLAGSLGNITSIDFDSDN 231 (459)
T ss_pred ccceeEEccCcchhh-hcchhhhhhhhhcccch------------------------hhhhhhhhccCCCcceeeecCCC
Confidence 344566667777776 58899999999774332 23456778889999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~ 599 (784)
+++++++.|+.+++|+++......++.+|.+.|+++.|......+++|+.|.+|++||+.... |.+.... .+.+..|+
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~-~S~cnDI~ 309 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLP-GSQCNDIV 309 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eeccccc-cccccceE
Confidence 999999999999999999999999999999999999999877779999999999999999855 4444332 34456666
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC----C
Q 047260 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG----H 673 (784)
Q Consensus 600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~----h 673 (784)
.. ...++++..|+.|++||+++..+..... +.++++..++++..+++++.|.++.++|+++......+.. .
T Consensus 310 ~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 310 CS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 55 3378889999999999999887776655 7899999999999999999999999999999988887763 2
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCc--eEEEEEecCCCEEEEEECCCeEEEE
Q 047260 674 AELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQ--FHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 674 ~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~--I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
...++.++|+|++.|+++|+. +.|+||++.++++...+...... |+++.|+|.|..+++++.++.+.+|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 335889999999999999995 59999999999999988866555 9999999999999999999999999
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=248.32 Aligned_cols=263 Identities=22% Similarity=0.420 Sum_probs=226.8
Q ss_pred CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeE-eecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260 451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGC-IRSRNSKVTCCHFSSDGKLLASSGHDR 529 (784)
Q Consensus 451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~-l~~H~~~V~~l~fspdg~~Lasgs~Dg 529 (784)
+.++.+|+.|.++.+|+.... ..+.+ +.+|.+.|++++|..-+.+|++|+.|.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~--------------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG--------------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK 271 (537)
T ss_pred cCeEEecCCCceeEEeecccc--------------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCC
Confidence 445567888999988855222 24444 899999999999988788999999999
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~ 609 (784)
+++|||..++.+...+.+|.+.|.++... ..++++|+.|.+|++|++.++. ++..+.+|.++|.++..+ ..+++
T Consensus 272 t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lv 345 (537)
T KOG0274|consen 272 TERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLV 345 (537)
T ss_pred cEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEE
Confidence 99999999999999999999999999885 4578889999999999999877 788888899999999998 33899
Q ss_pred EEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC
Q 047260 610 FCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTN 685 (784)
Q Consensus 610 sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spd 685 (784)
+|+.|+.|++||+.+++++..+.+ .|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+..+.+ .
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--c
Confidence 999999999999999999988775 4566656554 89999999999999999999 999999999998866654 4
Q ss_pred CCEEEEEe-CCeEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 686 GDYLASVS-QNLVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 686 g~~Lasgs-dd~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
+++|++++ |+.|++||..++++++++.+ |...|..+.+. ...+++++.++.+++||+.+++..
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 67888887 55999999999999999998 56778888776 457999999999999999998876
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-25 Score=234.36 Aligned_cols=241 Identities=19% Similarity=0.270 Sum_probs=209.6
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCC
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~ 581 (784)
+......|.+++|..||++||+|+..|.|+|||+++...++.+.+|..+|..+.|+| ++..|++|++|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 334567799999999999999999999999999888788899999999999999999 6677889999999999999987
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
. ....+.+|++.|.|.+|+|....++++|+.||.|++||++.. ..+.. +..+|..+.+-|.|..+++++. ..|+|
T Consensus 144 ~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 144 Y-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred E-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence 6 466788999999999999999999999999999999999976 44433 4478999999999887776654 78999
Q ss_pred EECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260 659 FDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 659 wDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d 736 (784)
||+-+| +.+..+..|...|+|+++..++..|++++ |+.|+|||+.+.+.+..+.-. ++|.+|+.+|++..+++|..+
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEeccc
Confidence 999965 55555556999999999999999999988 669999999999999888654 889999999999999999999
Q ss_pred CeEEEEECCC
Q 047260 737 SSLELWNMAE 746 (784)
Q Consensus 737 g~I~Iwdl~~ 746 (784)
|.+.+-+...
T Consensus 301 Glv~~rr~~~ 310 (487)
T KOG0310|consen 301 GLVSIRRREV 310 (487)
T ss_pred ceeeeehhhc
Confidence 9877764433
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=5.4e-25 Score=234.70 Aligned_cols=285 Identities=15% Similarity=0.233 Sum_probs=226.2
Q ss_pred CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260 435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH 514 (784)
Q Consensus 435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~ 514 (784)
.+++.++++..+.+...+|+ +||+|.+|+.|+.......- ..|+.+.- .....|.++.
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~-sGs~Dy~v~~wDf~gMdas~-------------------~~fr~l~P--~E~h~i~sl~ 221 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFV-SGSLDYTVKFWDFQGMDASM-------------------RSFRQLQP--CETHQINSLQ 221 (641)
T ss_pred cCCceEEEEeeecCCCceee-eccccceEEEEecccccccc-------------------hhhhccCc--ccccccceee
Confidence 34557788888889999998 59999999999885443111 11222221 2345699999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeec------------CCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCC
Q 047260 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTP------------EDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l------------~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~ 581 (784)
|++.|..|++.+....++|+|-+........ ++|...++|.+|+|+ ...|+|++.||++||||+.+.
T Consensus 222 ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 222 YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 9999998888888889999998765544433 479999999999994 467999999999999999876
Q ss_pred cceeeecc-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------eeEEeecC--CeeEEEEecCCCEEE
Q 047260 582 NFCSQAYT-----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF------LCTHITKG--GTAQVRFQPRIGQLL 648 (784)
Q Consensus 582 ~~~~~~~~-----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~------~~~~~~~~--~v~~v~fsp~~~~Ll 648 (784)
+.-...+. +..-+++.++|++++. +|++|..||.|.+|+.... .....|.. .+++|.|+++|++|+
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 64333332 3445789999999998 5888888999999998642 12223333 799999999999999
Q ss_pred EEECCCcEEEEECCCC-eEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-------CCeEEEEeCCCCceEEEeccCCCce
Q 047260 649 AAASDKVVSIFDIETD-RQTHSLQGH--AELVNYICWDTNGDYLASVS-------QNLVKVWSMASGECIQELSSNGNQF 718 (784)
Q Consensus 649 ~~s~Dg~I~IwDl~t~-~~i~~l~~h--~~~V~sl~~spdg~~Lasgs-------dd~I~IwDl~t~~~i~~l~~~~~~I 718 (784)
+-+.|+++++||++.. +++....+- .-+-+.++|+|+.++|++|. .+.+.+||..+...+.++......|
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 9999999999999986 555555542 33567899999999999986 2379999999999999998888999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEE
Q 047260 719 HSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
..|.|+|.-+.|++++.||.++||
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEeecchhhheeeecCCCceEEE
Confidence 999999999999999999999987
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-24 Score=237.77 Aligned_cols=237 Identities=20% Similarity=0.340 Sum_probs=212.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999998 99999999997 6789999999999999999877666
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEeecCCeeEEEEecCCCE-EEEEEC--CCcEEEE
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN---PFLCTHITKGGTAQVRFQPRIGQ-LLAAAS--DKVVSIF 659 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~---~~~~~~~~~~~v~~v~fsp~~~~-Ll~~s~--Dg~I~Iw 659 (784)
..+.+|...|..+.|++++. .+++|+.|+.|.|||.. ....+..+...|..++|+|...- |++|+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999987 89999999999999994 45556667789999999997655 455443 9999999
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d 736 (784)
|..+++.+..+. ....|.+|.|++..+-|+++. ++.|.||+..+.+.+..+.+|...|..++++||+..|++++.|
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 999999988876 567899999999887666654 4599999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCC
Q 047260 737 SSLELWNMAEN 747 (784)
Q Consensus 737 g~I~Iwdl~~~ 747 (784)
.++++|++-+.
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998775
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.7e-25 Score=217.63 Aligned_cols=245 Identities=19% Similarity=0.308 Sum_probs=206.0
Q ss_pred eEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMD-TLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVR 574 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~ 574 (784)
.+...+. -.+.+..++|+++. +.+++++.||+++|||+. ...++..+++|...|.++.|++ +...++++|.|++|+
T Consensus 52 ~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 52 QECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred EEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 4444443 46779999999954 578889999999999975 4568889999999999999999 667788999999999
Q ss_pred EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---eeEEeecCCeeEEEEecCCC-EEEEE
Q 047260 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF---LCTHITKGGTAQVRFQPRIG-QLLAA 650 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~---~~~~~~~~~v~~v~fsp~~~-~Ll~~ 650 (784)
+|+...++ .+.++.+|...|....|+|....+|++++.|+.+++||++.. ..+..+...+.++.|+.... .++++
T Consensus 131 LW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 131 LWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred eecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 99998766 678899999999999999999999999999999999999852 23444556888999987554 56677
Q ss_pred ECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecC
Q 047260 651 ASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 651 s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspd 726 (784)
+.|+.|++||+++- .++..+.+|.-.|+.|+|+|.. .+|++++-| +++|||...+ .++.+...|..-+..+.|++.
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 77999999999985 5788889999999999999964 578899988 9999999854 567777788888888888874
Q ss_pred -CCEEEEEECCCeEEEEEC
Q 047260 727 -YSTLLVVGGISSLELWNM 744 (784)
Q Consensus 727 -g~~L~s~s~dg~I~Iwdl 744 (784)
..++++++-|+.++||+.
T Consensus 290 ~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCceeeecccccceeeecc
Confidence 457999999999999984
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=233.45 Aligned_cols=330 Identities=18% Similarity=0.256 Sum_probs=261.0
Q ss_pred ceeeeecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC
Q 047260 427 KTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR 506 (784)
Q Consensus 427 k~~~~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H 506 (784)
...+++...+..+.+++....+-.+ ++++|..+|.|.+++...+. .+.+|+.-
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dk--------------------------il~sFk~d 243 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDK--------------------------ILMSFKQD 243 (910)
T ss_pred cCcEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCc--------------------------EEEEEEcc
Confidence 3344555555556666666655554 45689999999999774433 34555544
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-
Q 047260 507 NSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF- 583 (784)
Q Consensus 507 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~- 583 (784)
.+.|+.|+|.-||+ .+|+|+..|.+.+||++..+....+. .|.+.|+.+.|.+....+++++.|..+++|-.+++..
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 59999999999998 56778888999999999888877776 7999999999999999999999999999987664432
Q ss_pred --eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe----------------------------------------
Q 047260 584 --CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS---------------------------------------- 621 (784)
Q Consensus 584 --~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD---------------------------------------- 621 (784)
.++...||..+..||.|.......+.+.+.|..++.++
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 44556689999999998855555566666665554443
Q ss_pred -------------------------CCCCe---eEEee------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260 622 -------------------------INPFL---CTHIT------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT 667 (784)
Q Consensus 622 -------------------------l~~~~---~~~~~------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i 667 (784)
++... .+... ...+++++.++.|+..+.|++.|.|-+|++.+|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 32211 11111 145678899999999999999999999999999888
Q ss_pred EEE---eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCce------------------------------------
Q 047260 668 HSL---QGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGEC------------------------------------ 707 (784)
Q Consensus 668 ~~l---~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~------------------------------------ 707 (784)
.++ ..|..+|+.++.+.-++.+++++ +|.+++||+.....
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 888 47999999999998888777766 66888888765432
Q ss_pred -----EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC-CcEE
Q 047260 708 -----IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD-SSVK 781 (784)
Q Consensus 708 -----i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D-G~V~ 781 (784)
+++|.+|.+.|++++|+|||++|++++.|++|++||+.++.++....-+.+++++.|+|+|.+|||+..| .-|+
T Consensus 564 ~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 564 VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEE
Confidence 2344578899999999999999999999999999999999999888889999999999999999999988 6699
Q ss_pred Ee
Q 047260 782 LW 783 (784)
Q Consensus 782 IW 783 (784)
+|
T Consensus 644 lW 645 (910)
T KOG1539|consen 644 LW 645 (910)
T ss_pred EE
Confidence 98
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.3e-24 Score=250.69 Aligned_cols=290 Identities=21% Similarity=0.312 Sum_probs=234.0
Q ss_pred ccccccccCCCceEeccc--cCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260 441 ASASNLLEDIDRFADVGS--IDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD 518 (784)
Q Consensus 441 ~ss~~~~~~~~~ll~~gS--~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd 518 (784)
+-++...++..+|. +|. .|+.+++|....=.+... +. ...--..+.+...|.+.|+|+.|+||
T Consensus 16 IfSIdv~pdg~~~a-TgGq~~d~~~~iW~~~~vl~~~~---------~~-----~~~l~k~l~~m~~h~~sv~CVR~S~d 80 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFA-TGGQVLDGGIVIWSQDPVLDEKE---------EK-----NENLPKHLCTMDDHDGSVNCVRFSPD 80 (942)
T ss_pred EEEEEecCCceeEe-cCCccccccceeeccccccchhh---------hh-----hcccchhheeeccccCceeEEEECCC
Confidence 33455557777776 466 788888885421110000 00 00012356677889999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC------------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260 519 GKLLASSGHDRKVVLWNMDT------------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t------------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~ 580 (784)
|.+||+|++|+.|.||+... .+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence 99999999999999998762 246778889999999999999999999999999999999999
Q ss_pred CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---------CCeeEEEEecCCCEEEEEE
Q 047260 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---------GGTAQVRFQPRIGQLLAAA 651 (784)
Q Consensus 581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---------~~v~~v~fsp~~~~Ll~~s 651 (784)
. .....+.+|.+.|..+.|.|-|. +|++-++|++|+||++....+.+... .....+.|+|||.+|++..
T Consensus 161 F-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 F-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred c-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 8 58899999999999999999998 88899999999999988765555544 2356788999999999876
Q ss_pred C----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CC------------EEEEEeCC-eEEEEeCCCCceEE
Q 047260 652 S----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTN-----GD------------YLASVSQN-LVKVWSMASGECIQ 709 (784)
Q Consensus 652 ~----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd-----g~------------~Lasgsdd-~I~IwDl~t~~~i~ 709 (784)
. ...+.|.+-.+.+.-..|.+|..++.++.|+|. .. .+|+|+.| +|.||.....+++.
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 5 357899998888888999999999999999972 11 56677755 99999998877765
Q ss_pred Eec-cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260 710 ELS-SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 710 ~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~ 747 (784)
.+. -....|.++.|+|||-.|++++.||+|.++.++..
T Consensus 319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543 34578999999999999999999999999998764
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.1e-25 Score=221.44 Aligned_cols=287 Identities=16% Similarity=0.292 Sum_probs=243.5
Q ss_pred cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~ 574 (784)
..+..++.+.+|.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|.|++.+.++++++.|++.+
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 34567788899999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC------CCC---------------------------------cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260 575 LWDA------ANP---------------------------------NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN 615 (784)
Q Consensus 575 IWdl------~~~---------------------------------~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg 615 (784)
||.. ..+ ..++..+.+|.+.|.+..|...+. -+++++.|.
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDR 294 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDR 294 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccc
Confidence 9972 110 012345678999999999987766 778999999
Q ss_pred eEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 047260 616 EIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLAS 691 (784)
Q Consensus 616 ~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Las 691 (784)
+..+||++++..+..+.+ ..+.++-+|..+.+++.+.|.+.++||++.. ..+..|.+|...|+++.|..+.+ +++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS 373 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS 373 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee
Confidence 999999999998887765 4566778999888999999999999999854 56778999999999999987654 677
Q ss_pred EeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe-----cccCCceEEEEE
Q 047260 692 VSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI-----AAHENIISALAQ 764 (784)
Q Consensus 692 gsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~-----~~h~~~V~slaf 764 (784)
++|| +|+|||+++. .++.++.. .++++.++++..++.|+.--.+..|++||++......+ .+|...|+|++|
T Consensus 374 gSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred cCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence 7777 9999999986 46666654 47889999999888888888888999999998876533 489999999999
Q ss_pred eCCCC--EEEEEECCCcEEEeC
Q 047260 765 SPVTG--MVASASHDSSVKLWK 784 (784)
Q Consensus 765 spdg~--~LaSgs~DG~V~IWd 784 (784)
..+.. -|++|+.|..|.-|+
T Consensus 453 ~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 453 LEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred cccCcccccccccccceeeeeE
Confidence 96643 688999999998885
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.5e-24 Score=237.08 Aligned_cols=275 Identities=15% Similarity=0.258 Sum_probs=234.1
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eecCCCCCCeEE-EEEcc-CCCEEEEEeCCCeE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STPEDHKSVVTD-VRFRP-NSSQLATASVDKSV 573 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~h~~~It~-i~fsp-dg~~Latgs~Dg~I 573 (784)
..-+++.+|+..|..+++.++. .+++++.||+++||+-.....+ ..+.+|.+.|.+ +++.+ ++-.|++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4456789999999999887554 7899999999999998654433 456678888877 88886 55569999999999
Q ss_pred EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260 574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTHITKGGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~~~~~~v~~v~fsp~~~~Ll~~s~ 652 (784)
.+|...... ...++.+|...|+|+....++. +++|+.|.++++|-+... .....|...|..+..-|+. .+++|+.
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 999998866 7888999999999999877664 889999999999988653 3345566788889888886 8999999
Q ss_pred CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260 653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV 732 (784)
Q Consensus 653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s 732 (784)
|.+|++|.- ++.+++|.+|.+.|+.+++-+++.+|.++.|+.|++|++ +|+++.++.+|.+-|+++....++..|++
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 999999986 788899999999999999999988887777889999999 89999999999999999998888889999
Q ss_pred EECCCeEEEEECCCCceEEecccCC-ceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 733 VGGISSLELWNMAENKSMTIAAHEN-IISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 733 ~s~dg~I~Iwdl~~~~~~~~~~h~~-~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
++.|++++||+.. ++.....|.. .|+++.+-++|. |++|++||.|+||
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 9999999999987 5555555555 899998887764 6678899999998
No 89
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2e-23 Score=237.75 Aligned_cols=223 Identities=14% Similarity=0.238 Sum_probs=182.6
Q ss_pred EeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCe
Q 047260 502 CIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPNS-SQLATASVDKS 572 (784)
Q Consensus 502 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~ 572 (784)
.+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. ..+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3678999999999999 8899999999999999999764 3466788999999999999975 69999999999
Q ss_pred EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC----eeEEEEecCCCEEE
Q 047260 573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG----TAQVRFQPRIGQLL 648 (784)
Q Consensus 573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~----v~~v~fsp~~~~Ll 648 (784)
|+|||++++. ....+.+|...|.+++|+|++. +|++++.|+.|++||+++...+..+..+ ...+.|.+++..++
T Consensus 150 VrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 9999999876 5667788999999999999986 7889999999999999988776655422 34677888888888
Q ss_pred EEE----CCCcEEEEECCCCe-EEEEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc-CCCceE
Q 047260 649 AAA----SDKVVSIFDIETDR-QTHSLQG-HAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS-NGNQFH 719 (784)
Q Consensus 649 ~~s----~Dg~I~IwDl~t~~-~i~~l~~-h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~-~~~~I~ 719 (784)
+++ .|+.|++||+++.. ++..+.. +...+....|++++.+|++++ |+.|++||+.+++++..... +..++.
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~ 307 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK 307 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence 765 37899999998764 4443332 334566678999999988876 55999999999987766543 345677
Q ss_pred EEEEecC
Q 047260 720 SCVFHPS 726 (784)
Q Consensus 720 sl~fspd 726 (784)
.++|.|.
T Consensus 308 g~~~~pk 314 (493)
T PTZ00421 308 GLCMMPK 314 (493)
T ss_pred ceEeccc
Confidence 8888885
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=214.95 Aligned_cols=239 Identities=23% Similarity=0.358 Sum_probs=211.0
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 047260 543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621 (784)
Q Consensus 543 ~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD 621 (784)
+.+.+|...|.+|+|+.+|..|++|+.|+++++|+++..+. ......+|.+.|-.++|+|..+.+|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999987542 22345689999999999999999999999999999999
Q ss_pred CCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 047260 622 INPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVK 698 (784)
Q Consensus 622 l~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~ 698 (784)
++..++..... +.-.-+.|+|++.+++++..|..|.++|.++.+.....+ ....+..++|+.++.+++... -|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999887765 555678899999999999999999999999888776655 556778889987776655544 57999
Q ss_pred EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECC
Q 047260 699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 699 IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
|.....-+++..+..|.....|+.|+|+|+++++|+.|-.+.+||+.+--+. .+..++-+|+.|.|+.||++||+|+.|
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 9999999999999999999999999999999999999999999999998887 566899999999999999999999999
Q ss_pred CcEEE
Q 047260 778 SSVKL 782 (784)
Q Consensus 778 G~V~I 782 (784)
..|-|
T Consensus 253 h~IDI 257 (313)
T KOG1407|consen 253 HFIDI 257 (313)
T ss_pred ceEEe
Confidence 88754
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=9.7e-24 Score=209.69 Aligned_cols=279 Identities=17% Similarity=0.156 Sum_probs=229.3
Q ss_pred CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260 437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS 516 (784)
Q Consensus 437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs 516 (784)
+.....-+.+..+.+ |+.+++.|....+|.+.++. .+.++.+|++.|+||+.+
T Consensus 9 HERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGe--------------------------rlGty~GHtGavW~~Did 61 (327)
T KOG0643|consen 9 HERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGE--------------------------RLGTYDGHTGAVWCCDID 61 (327)
T ss_pred CccccceEEecCCCc-EEEEecCCCCceEEEecCCc--------------------------eeeeecCCCceEEEEEec
Confidence 444456666655555 45568899999999875543 578899999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC-----CCeEEEEcCCCC------ccee
Q 047260 517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV-----DKSVRLWDAANP------NFCS 585 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-----Dg~I~IWdl~~~------~~~~ 585 (784)
.+.++|++|+.|.++++||+++++.+..++ ...+|..+.|+++|++++.+.. .+.|.++|++.. +.+.
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 999999999999999999999999999985 6788999999999998887754 368999999842 2345
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE----EeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT----HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI 661 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~----~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl 661 (784)
..+..+.+.++.+-|.|-+. .+++|..||.|.+||++++..+ ..+...|+.+.++++..++++++.|.+-++||.
T Consensus 141 ~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred EEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 55666779999999999987 7778999999999999986443 345578999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEeCCCC------------ceEEEeccCCCceEEEEEecC
Q 047260 662 ETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QN--LVKVWSMASG------------ECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 662 ~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd--~I~IwDl~t~------------~~i~~l~~~~~~I~sl~fspd 726 (784)
++...++++. ...+|++.+++|...+++.++ .+ .|.--+.+.| +.+..+++|-++|++++|+|+
T Consensus 220 ~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 220 RTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred cceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 9999999887 677999999999877776655 22 3333333333 456778899999999999999
Q ss_pred CCEEEEEECCCeEEEEECC
Q 047260 727 YSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 727 g~~L~s~s~dg~I~Iwdl~ 745 (784)
|+..++|+.||.|++.-..
T Consensus 299 GksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CcccccCCCCceEEEEEec
Confidence 9999999999999887544
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=217.40 Aligned_cols=296 Identities=16% Similarity=0.263 Sum_probs=233.2
Q ss_pred cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260 440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG 519 (784)
Q Consensus 440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg 519 (784)
...+..|.+| ..|+++||.|..++++++. |.+... + +...........-..|++|..|.+.|+++.|+|..
T Consensus 114 ~cR~aafs~D-G~lvATGsaD~SIKildve-----rmlaks-~--~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 114 PCRAAAFSPD-GSLVATGSADASIKILDVE-----RMLAKS-K--PKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred ceeeeeeCCC-CcEEEccCCcceEEEeehh-----hhhhhc-c--hhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3445556444 4566789999999999774 222211 0 00000011111235689999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee--ccCCCCCe
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA--YTGHSSPI 595 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~--~~~h~~~V 595 (784)
.+|++|+.|++|++||+..-...+.+ .....+|.+|.|+|.|.+|+.|....++++||+++-...+.. -..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999999754333222 245578999999999999999999999999999986633322 24689999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
+++.+++.+. +.++++.||.|++||--+.+|+..+. ..|++..|..+++++++.+.|..|++|.+.+++.+..+
T Consensus 265 ~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 265 TQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999987 88999999999999998888887664 56888899999999999999999999999999999988
Q ss_pred eCCC-----CCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEec-cCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260 671 QGHA-----ELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELS-SNGNQFHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 671 ~~h~-----~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
.+-. ..-+...|+....|++.-.+. .+.-||.++...+..+. +|.+.+..+.-+|.+..+++|+.|-.+++|
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 7531 122445688888888887754 89999999987665553 789999999999999999999999999999
Q ss_pred ECC
Q 047260 743 NMA 745 (784)
Q Consensus 743 dl~ 745 (784)
--+
T Consensus 424 yrr 426 (430)
T KOG0640|consen 424 YRR 426 (430)
T ss_pred eec
Confidence 643
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.7e-24 Score=214.09 Aligned_cols=257 Identities=18% Similarity=0.343 Sum_probs=210.8
Q ss_pred EEEEeCCCeEEEEECCC------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260 522 LASSGHDRKVVLWNMDT------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589 (784)
Q Consensus 522 Lasgs~Dg~I~IWd~~t------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~ 589 (784)
|++|+....|.-+++.- ...+..+..|.+.|++++.+ +.++|+|+.|.+|+|||+.... ....+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh-hhccee
Confidence 56677666666665531 23356677899999999994 8999999999999999999865 566677
Q ss_pred CCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260 590 GHSSPIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR 665 (784)
Q Consensus 590 ~h~~~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~ 665 (784)
.|.+.|+++.|.+.-. ..|++|+.||.|.+|+.....++..++ +.|+.++++|.++..++.+.|+.+++||+-.++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999988642 357789999999999999887766554 679999999999999999999999999999887
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 666 QTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
.-..+.- ...-+.|.|+|.|.+++.+..+.|-||.+.+.....++... ..+.++.|. ++..+++|+.++.|.+||.+
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence 6655542 22334499999999999999999999999988776666544 456666665 45679999999999999999
Q ss_pred CCceE-EecccCCceEEEEEe--CCCCEEEEEECCCcEEEeC
Q 047260 746 ENKSM-TIAAHENIISALAQS--PVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 746 ~~~~~-~~~~h~~~V~slafs--pdg~~LaSgs~DG~V~IWd 784 (784)
+..+. .+.+|..+|.++.+- |++.+|+|+|.||.|+|||
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 87776 677999999999854 5678999999999999997
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.1e-22 Score=217.05 Aligned_cols=262 Identities=13% Similarity=0.119 Sum_probs=206.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS 597 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s 597 (784)
++.+++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++ ....+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc-EEEeccCCC-CccE
Confidence 3578899999999999999999888887554 46789999999876 566788999999999866 333344333 3567
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCC-cEEEEECCCCeEEEEEeCCC
Q 047260 598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHA 674 (784)
Q Consensus 598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg-~I~IwDl~t~~~i~~l~~h~ 674 (784)
++|+|++..+++++..++.|++||+.+...+..+. ..+..++|+|++..++++..++ .+.+||.++++.+..+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 89999998777777789999999999877766554 3467899999999999888764 577889998877665542 3
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEeccCC-------CceEEEEEecCCCEEEEE-ECCCeEEEEEC
Q 047260 675 ELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSSNG-------NQFHSCVFHPSYSTLLVV-GGISSLELWNM 744 (784)
Q Consensus 675 ~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~~~-------~~I~sl~fspdg~~L~s~-s~dg~I~Iwdl 744 (784)
..+.+++|++++.+|++++ ++.|++||+.+++++..+..+. .....++|+|++++++++ +.++.|.+||+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 3457899999999886554 4599999999998877664321 123568899999986654 45678999999
Q ss_pred CCCceEEecccCCceEEEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260 745 AENKSMTIAAHENIISALAQSPVTGMVASAS-HDSSVKLWK 784 (784)
Q Consensus 745 ~~~~~~~~~~h~~~V~slafspdg~~LaSgs-~DG~V~IWd 784 (784)
.+++......+...+.+++|+|++++|++++ .+|.|+|||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 237 KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 9888775545666899999999999998864 689999997
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.4e-24 Score=241.92 Aligned_cols=240 Identities=17% Similarity=0.311 Sum_probs=195.9
Q ss_pred eeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC--------------------------------Cc------
Q 047260 542 ESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN--------------------------------PN------ 582 (784)
Q Consensus 542 ~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~--------------------------------~~------ 582 (784)
...+. .|.+.|+++.|++||+|||+|+.||.|+||.+.. ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34445 8999999999999999999999999999998754 00
Q ss_pred ---------------------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEE
Q 047260 583 ---------------------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVR 639 (784)
Q Consensus 583 ---------------------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~ 639 (784)
.+...+.||.+.|.+|.|+.++ +|++++.|.+|++|++....|+..+ ..-|+||+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 0123467899999999999764 8999999999999999988887665 47899999
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEecc----
Q 047260 640 FQP-RIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSS---- 713 (784)
Q Consensus 640 fsp-~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~---- 713 (784)
|+| |.+++++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ .|.+++|+....+....+..
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 45788899999999999998777665444 458899999999999999998 66999999988776554421
Q ss_pred ----CCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCceE-EecccC--CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 714 ----NGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAENKSM-TIAAHE--NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 714 ----~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~--~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
....|+.+.|.|... .+++.+.|..|+|||.++...+ .+.++. ..=....|+.||++|+++++|..|+||+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 123799999987654 5999999999999999877766 444332 2334567889999999999999999996
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.9e-23 Score=211.85 Aligned_cols=266 Identities=18% Similarity=0.238 Sum_probs=213.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
-.+.|.++.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 3567999999998888998999999999999987665555 6999999999996 5579999999999999999876 4
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR 665 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~ 665 (784)
..+..|..+|.||.+.+... .+++|+.|+.|++||.+.......+...-...+.+-.++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 45667999999999997654 78899999999999999755554444333344455677899999999999999999876
Q ss_pred EEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC----ceEEEeccCC---------CceEEEEEecCCCE
Q 047260 666 QTHSLQ--GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG----ECIQELSSNG---------NQFHSCVFHPSYST 729 (784)
Q Consensus 666 ~i~~l~--~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~----~~i~~l~~~~---------~~I~sl~fspdg~~ 729 (784)
...... .-+-.++||++-|++.=+++++ +|.|.+=.+... +....|+.|. .+|++++|+|-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 544322 2445789999999776555555 776666555444 3344555553 36899999999999
Q ss_pred EEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEEC
Q 047260 730 LLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASH 776 (784)
Q Consensus 730 L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~ 776 (784)
|++|+.||.|.+||+...+.+ .+...+..|..++|+.+|..||+++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998887 55566788999999999999999874
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=221.51 Aligned_cols=277 Identities=17% Similarity=0.282 Sum_probs=225.9
Q ss_pred EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee----e-------------c-CCCCCCeEEEEEccCC
Q 047260 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES----T-------------P-EDHKSVVTDVRFRPNS 561 (784)
Q Consensus 500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~----~-------------l-~~h~~~It~i~fspdg 561 (784)
+..+..|.-+|+||+++||.+++++++.|++|.-|++.+++... . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 66778899999999999999999999999999999998776331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEE
Q 047260 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQV 638 (784)
Q Consensus 562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v 638 (784)
+||++|+.|..|.||+.++.+ .+..+.+|.+.|.+++|-.. ..-+++++.|..|++|+++....+ ..+...|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 999999999999999999977 67778999999999999754 446778888999999999875444 4455677888
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEecc-C--
Q 047260 639 RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSS-N-- 714 (784)
Q Consensus 639 ~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~-~-- 714 (784)
.....++.+-+++.|+++++|++.. +....+.++.+.+-|++|-.+.. +++|++ +.|.+|++...+++++... |
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEeeccccc
Confidence 8777777777788999999999943 34445678999999999976655 555665 5999999999988877642 1
Q ss_pred ---------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCc----eEEecccCCceEEEEEeCCCCEEEEE-ECCCcE
Q 047260 715 ---------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK----SMTIAAHENIISALAQSPVTGMVASA-SHDSSV 780 (784)
Q Consensus 715 ---------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~----~~~~~~h~~~V~slafspdg~~LaSg-s~DG~V 780 (784)
..+|++++..|...++++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|+.|++| +....+
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence 1278999999999999999999999999999883 22333577899999999999965554 444443
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=8.9e-24 Score=231.81 Aligned_cols=286 Identities=12% Similarity=0.217 Sum_probs=230.4
Q ss_pred eEEeEeecCCCceEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceeeec---------------------
Q 047260 498 CEVGCIRSRNSKVTCCHFSSD-----------GKLLASSGHDRKVVLWNMDTLQTESTP--------------------- 545 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspd-----------g~~Lasgs~Dg~I~IWd~~t~~~~~~l--------------------- 545 (784)
.+...+--|...|+.+.--|. ...++|++.|++|++||++.+..-..+
T Consensus 360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQI 439 (1080)
T ss_pred cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhh
Confidence 344445568888888776551 135889999999999999752111100
Q ss_pred ----------------CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC--CCcE
Q 047260 546 ----------------EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK--KTDL 607 (784)
Q Consensus 546 ----------------~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~--~~~l 607 (784)
-.....|.+++.+|++.+|++|..-|+++||++.+.+ .......|..+|.|+.|+.. +..+
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCchhhhHh
Confidence 0234579999999999999999999999999998766 45567789999999999753 4569
Q ss_pred EEEEeCCCeEEEEeCCC-C---eeEEeecCCeeEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEeC-----CCCC
Q 047260 608 FCFCDNDNEIQYWSINP-F---LCTHITKGGTAQVRFQPRI--GQLLAAASDKVVSIFDIETDRQTHSLQG-----HAEL 676 (784)
Q Consensus 608 l~sgs~dg~I~iwDl~~-~---~~~~~~~~~v~~v~fsp~~--~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-----h~~~ 676 (784)
|++++.|..|.|||... . ..+..+...|+++.|...| ..+++++.|+.|.+--.........|.. ....
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 99999999999999964 2 3344556789999998877 6789999998886544432222222222 2457
Q ss_pred EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc---CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-E
Q 047260 677 VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS---NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-T 751 (784)
Q Consensus 677 V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~ 751 (784)
++.++..|..+++++++.| .|+|||+.+++.++.|++ |++....+...|.|-||++...|.+|.++|..+++++ .
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 8899999999999999966 999999999999999985 5567889999999999999999999999999999998 8
Q ss_pred ecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 752 IAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 752 ~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
..+|...|+.+.|.+|-+.|++.+.||+|.||+
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 889999999999999999999999999999995
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=211.19 Aligned_cols=267 Identities=18% Similarity=0.237 Sum_probs=213.6
Q ss_pred CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260 439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD 518 (784)
Q Consensus 439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd 518 (784)
..++++.|++..+.++.+||||++|++|.+..++ .. . -+....|.++|.|++|+.|
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~-~---------------------~ka~~~~~~PvL~v~Wsdd 83 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QL-V---------------------PKAQQSHDGPVLDVCWSDD 83 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCC--cc-c---------------------chhhhccCCCeEEEEEccC
Confidence 3456777888888999999999999999987653 11 0 0234569999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC--EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS--QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM 596 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~--~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~ 596 (784)
|..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||.|++|+.||++....+ ..+ ...+.|+
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv-~t~-~LPeRvY 160 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV-ATL-QLPERVY 160 (347)
T ss_pred CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee-eee-eccceee
Confidence 9999999999999999999985 456668999999999998655 8999999999999999986633 322 2356777
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE----EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEE
Q 047260 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CT----HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHS 669 (784)
Q Consensus 597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~----~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~ 669 (784)
+++.-. .+++++..+..|.+|+++... .. ..++-.+.+|+...+....+.|+.+|.+.|..+..+ +.-..
T Consensus 161 a~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 161 AADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred ehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee
Confidence 776643 277888889999999996432 22 224456789999888888899999999999998876 44455
Q ss_pred EeCCCC---------CEEEEEEcCCCCEEEE-EeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260 670 LQGHAE---------LVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 670 l~~h~~---------~V~sl~~spdg~~Las-gsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~ 735 (784)
|+.|.. .|++|+|+|....|++ |+||++.+||-.....+++...+..+|+++.|+.+|.+++.+..
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 666652 5788999996655555 55779999999988889999999999999999999998877654
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-22 Score=196.13 Aligned_cols=290 Identities=17% Similarity=0.279 Sum_probs=228.9
Q ss_pred cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260 440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG 519 (784)
Q Consensus 440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg 519 (784)
.+.++.|.+.. .+.++||-..+.++....+-.+.|..-. ..+-.+....+.-+.|.+.|.|.+|+|+|
T Consensus 34 airav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~he-----------a~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 34 AIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHE-----------AAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred heeeEEecCCC-ceEEeccCCceEEEEccccccCcccccc-----------cccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34556665554 4556899888888886655444333211 11122233445567899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCc-----eeeecCCCCCCeEEEEEcc----CCCEEEEEeC-CCeEEEEcCCCCcceeeecc
Q 047260 520 KLLASSGHDRKVVLWNMDTLQ-----TESTPEDHKSVVTDVRFRP----NSSQLATASV-DKSVRLWDAANPNFCSQAYT 589 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~~~It~i~fsp----dg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~ 589 (784)
.+||+|+.|.+|++..++... ....+.-|.+.|.+++|-. .+.+|++++. |..|.+-|...+. ....+.
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~s 180 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALS 180 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeec
Confidence 999999999999998765322 1234567999999999975 3456776653 6677777877766 667788
Q ss_pred CCCCCeEEEE-EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----------CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 590 GHSSPIMSLD-FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----------GGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 590 ~h~~~V~sl~-~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
+|.+.|.++- |+ ..+|++|+.|.+|++||++-..++.... ..+..+++.|.|+.|+++-.|....+
T Consensus 181 ghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 181 GHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred CCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 9999998873 43 4599999999999999999877776543 45788999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC----ceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260 659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG----ECIQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~----~~i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
||++.++.+..+..|...|.|+.|+|...|+.+++-+ .|++-|+... -.+..+..|...+..|.|+|..-.+++.
T Consensus 258 ydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred EEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 9999999999999999999999999999999999966 9999998643 2445566788999999999999899999
Q ss_pred ECCCeEEEEECC
Q 047260 734 GGISSLELWNMA 745 (784)
Q Consensus 734 s~dg~I~Iwdl~ 745 (784)
+.|.++.+|-+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999764
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3e-23 Score=220.45 Aligned_cols=276 Identities=16% Similarity=0.244 Sum_probs=230.7
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecC--CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPE--DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~--~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
.|..-|.++.+|...++++||+ .|.|+|||+.. ...+..+. .....|.++.+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4888899999999999999988 56799999963 23333333 245779999999999999999999999999998
Q ss_pred CCccee-eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCc
Q 047260 580 NPNFCS-QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 580 ~~~~~~-~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
.....+ ..+....-.+.+++.+||.+ +.++|..||.|.|||+.....++.+. ..+.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 765322 22333334578899999987 66677789999999999988877766 57899999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s 734 (784)
|+.||+++++.+.... ....|.++..+|.+.+|++|-++ .|.|..... .....+..|++.|.++.|.+.|+++++.+
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecC
Confidence 9999999987665433 56789999999999999999877 787777543 34456677889999999999999999999
Q ss_pred CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 735 ~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.|+-+..|..--+..+.-....+.|.++.++.|+++|+||+.|....||.
T Consensus 653 kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 99999999999888887777888999999999999999999998887763
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=209.40 Aligned_cols=281 Identities=19% Similarity=0.273 Sum_probs=208.7
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eecC--CCCCCeEEEEEccCCCEEEEEe-CCCeE
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STPE--DHKSVVTDVRFRPNSSQLATAS-VDKSV 573 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~--~h~~~It~i~fspdg~~Latgs-~Dg~I 573 (784)
.+..|++|.+.|+|++|+.||++|||++.|+.|+||+++..... +.++ -.-+..+.+.|.||-+-++... ...++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 45678999999999999999999999999999999999864321 1111 1223568899999887665554 45579
Q ss_pred EEEcCCCCc---cee--------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEE
Q 047260 574 RLWDAANPN---FCS--------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVR 639 (784)
Q Consensus 574 ~IWdl~~~~---~~~--------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~ 639 (784)
++|.+...+ ... ..-..|.-.|..+-... +..++++++.|..|.+|+++ ++.+.... ...+..+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 999875322 111 11123455565555544 44588999999999999999 55554443 3456678
Q ss_pred EecCCCEEEEEECCCcEEEEECC---CC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCC------
Q 047260 640 FQPRIGQLLAAASDKVVSIFDIE---TD-----RQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMAS------ 704 (784)
Q Consensus 640 fsp~~~~Ll~~s~Dg~I~IwDl~---t~-----~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t------ 704 (784)
++|+|+++++++..-.|++|.+- .| ..+..+++|...|..++|+++.+.+++.+. ++++|||+.-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999999863 22 345678899999999999999999999995 4999999852
Q ss_pred -CceEEEec----cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECC
Q 047260 705 -GECIQELS----SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 705 -~~~i~~l~----~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
.+.+++.. ..++.-..+..+|.+..|+++.. ..|++|..++++.. ....|...|.+|+|+++|+++++++ |
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 22333331 22344458999999986666544 47999999998877 3347999999999999999999987 5
Q ss_pred CcEEEe
Q 047260 778 SSVKLW 783 (784)
Q Consensus 778 G~V~IW 783 (784)
..|+|+
T Consensus 394 r~vrv~ 399 (420)
T KOG2096|consen 394 RYVRVI 399 (420)
T ss_pred eeeeee
Confidence 667664
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=232.55 Aligned_cols=317 Identities=16% Similarity=0.182 Sum_probs=253.9
Q ss_pred ccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEe
Q 047260 447 LEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSG 526 (784)
Q Consensus 447 ~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs 526 (784)
.....+++.+|+.|+.++.|........ +.-..+..+..|.+.|+++....+++.|++++
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~--------------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S 92 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNE--------------------PSTPYIASMEHHSDWVNDIILCGNGKTLISAS 92 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCC--------------------cccchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence 3445666778999999999976443311 01114667888999999999999999999999
Q ss_pred CCCeEEEEECCCC--ceeeecCCCCCCeEEEEE-ccCCCEEEEEeCCCeEEEEcCCCCcc---------eeeecc-CCCC
Q 047260 527 HDRKVVLWNMDTL--QTESTPEDHKSVVTDVRF-RPNSSQLATASVDKSVRLWDAANPNF---------CSQAYT-GHSS 593 (784)
Q Consensus 527 ~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~f-spdg~~Latgs~Dg~I~IWdl~~~~~---------~~~~~~-~h~~ 593 (784)
.|-+|++|+.... -+..++..|.+.|.|+++ .++...+|+|+.|+.|.|||++++.. ....+. ++..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 9999999999876 577888999999999999 77889999999999999999996521 112223 7889
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
.|++++-++.+ .+|++|+..+.|++||.++.+.+..+ ...|.++..+++|..++++++||+|++||+...+++.++
T Consensus 173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred ceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 99999999988 48999999999999999987766554 466888999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260 671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS 749 (784)
Q Consensus 671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~ 749 (784)
..|...|.++..+|+-..+++|+.+ .|..=|+++......+.....+|..+..+....-+.+++.|+.|+-|...-...
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~ 331 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA 331 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccc
Confidence 9999999999999999999999855 999999998644444445567788888886666678899999999996543221
Q ss_pred EE--------e-----------------cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 750 MT--------I-----------------AAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 750 ~~--------~-----------------~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+. . ......|...+.-.|.+.++|-..+|.|.+||
T Consensus 332 l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 332 LSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred cccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 10 0 00111233334445778999999999999997
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-22 Score=203.05 Aligned_cols=276 Identities=19% Similarity=0.328 Sum_probs=221.3
Q ss_pred CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260 438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS 517 (784)
Q Consensus 438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp 517 (784)
...+.++.|.+++..+++ ++.|+.+++|+..++. .++++..+.-.|..++|..
T Consensus 14 ~~~i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~--------------------------~~~ti~skkyG~~~~~Fth 66 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLIT-SSEDDSLRLYDSLSGK--------------------------QVKTINSKKYGVDLACFTH 66 (311)
T ss_pred CCceeEEEecCCCCEEEE-ecCCCeEEEEEcCCCc--------------------------eeeEeecccccccEEEEec
Confidence 345677888777777775 8889999999875554 3455566777788888887
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260 518 DGKLLASSGH--DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI 595 (784)
Q Consensus 518 dg~~Lasgs~--Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V 595 (784)
....++.++. |.+|+..++.+.+.++.+.+|...|+.|+.+|-+..+++++.|++|++||++..+ +...+.. ..-
T Consensus 67 ~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~--~~~ 143 (311)
T KOG1446|consen 67 HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNL--SGR 143 (311)
T ss_pred CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEec--CCC
Confidence 7666666665 8899999999999999999999999999999988999999999999999999766 3333322 223
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260 596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPF-----LCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT 667 (784)
Q Consensus 596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-----~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i 667 (784)
..++|.|+|- +++++.....|++||++.. ...... ....+.+.|+|+|+.++.++..+.+++.|.-+|...
T Consensus 144 pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~ 222 (311)
T KOG1446|consen 144 PIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK 222 (311)
T ss_pred cceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe
Confidence 4578999986 6666666669999999853 222222 356788999999999999999999999999999998
Q ss_pred EEEeCCCCCE---EEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260 668 HSLQGHAELV---NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 668 ~~l~~h~~~V---~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
.++..+...- ...+|.||++++++|++| +|.+|++++++.+..+.+ +..++.++.|+|....++++ +..+.+|
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFW 300 (311)
T ss_pred eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEE
Confidence 8888765432 577899999999999975 999999999999999988 58889999999986555544 5578888
Q ss_pred ECCC
Q 047260 743 NMAE 746 (784)
Q Consensus 743 dl~~ 746 (784)
=...
T Consensus 301 ~p~~ 304 (311)
T KOG1446|consen 301 LPDE 304 (311)
T ss_pred eccc
Confidence 6543
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=216.68 Aligned_cols=265 Identities=18% Similarity=0.239 Sum_probs=225.8
Q ss_pred eEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 047260 453 FADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVV 532 (784)
Q Consensus 453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~ 532 (784)
++.+|..|.++.+++..... .+..++||...|+.+.|+++...+++++.|..|+
T Consensus 233 ~ilTGG~d~~av~~d~~s~q--------------------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQ--------------------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIR 286 (506)
T ss_pred cceecCCCCceEEEecchhh--------------------------hhhhccCcceEEEEEEeccchhheeecCCcceEE
Confidence 34468888888888653322 3556889999999999999999999999999999
Q ss_pred EEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEEE
Q 047260 533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCFC 611 (784)
Q Consensus 533 IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sg 611 (784)
||.............|.++|+.+..+|.|.||++++.|++..+.|++++........ ...-.+++.+|||||. +|.+|
T Consensus 287 vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg 365 (506)
T KOG0289|consen 287 VWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG 365 (506)
T ss_pred eeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc
Confidence 999998888888889999999999999999999999999999999999875443332 2334689999999986 89999
Q ss_pred eCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCC
Q 047260 612 DNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGD 687 (784)
Q Consensus 612 s~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~ 687 (784)
..|+.|+|||+.....+..+ .++|..+.|+.+|-+|++++.|+.|++||+|..+...++.- ....|.+++|+..|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 99999999999977665554 47899999999999999999999999999999887777764 334799999999999
Q ss_pred EEEEEeCC-eEEEEeCC--CCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260 688 YLASVSQN-LVKVWSMA--SGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 688 ~Lasgsdd-~I~IwDl~--t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl 744 (784)
+|+.++.+ .|++++-. ...++..+..|.+..+++.|.....++++++.|..++++.+
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999766 77777643 56788888888888999999999999999999999888764
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.3e-21 Score=208.81 Aligned_cols=284 Identities=14% Similarity=0.111 Sum_probs=208.4
Q ss_pred ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE-EEEeCCCe
Q 047260 452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL-ASSGHDRK 530 (784)
Q Consensus 452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L-asgs~Dg~ 530 (784)
+++.+++.|+.+.+|+..... .+..+..|. .+.+++|+|+++.+ ++++.++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~--------------------------~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~ 54 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE--------------------------VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDT 54 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc--------------------------eEEEEECCC-CCCceEECCCCCEEEEEECCCCe
Confidence 345567788999999753221 233344443 46789999999976 56678899
Q ss_pred EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260 531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609 (784)
Q Consensus 531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~ 609 (784)
|++||..+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.. ....+. +...+.+++|+|++..+++
T Consensus 55 v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred EEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEE
Confidence 99999999888877765544 5678999999877655 568999999998755 333333 2345688999999985544
Q ss_pred EEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEeCCC-----C--CEEE
Q 047260 610 FCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSLQGHA-----E--LVNY 679 (784)
Q Consensus 610 sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i~~l~~h~-----~--~V~s 679 (784)
+...+..+.+||.++....... ......+.|++++..+++++ .++.|++||+++++.+..+..+. . ....
T Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T TIGR03866 132 TSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG 211 (300)
T ss_pred EecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence 4433456788899877665432 34567789999999887665 48999999999998777664321 1 2346
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-CCCeEEEEECCCCceEEecccC
Q 047260 680 ICWDTNGDYLASVS--QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKSMTIAAHE 756 (784)
Q Consensus 680 l~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~~~~h~ 756 (784)
++|+|++++++++. ++.|.+||+.+++.+..+. +...+.+++|+|++.+|+++. .++.|++||+.+++++......
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 88999999865543 4589999999988876653 345789999999999998874 5899999999999987444455
Q ss_pred CceEEEEEeC
Q 047260 757 NIISALAQSP 766 (784)
Q Consensus 757 ~~V~slafsp 766 (784)
...+.++++|
T Consensus 291 ~~~~~~~~~~ 300 (300)
T TIGR03866 291 RLPWGVVVRP 300 (300)
T ss_pred cccceeEeCC
Confidence 6668888765
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=230.02 Aligned_cols=294 Identities=19% Similarity=0.266 Sum_probs=233.2
Q ss_pred eEeccccCCcceeEEeecCCCCcceeccccC----------CC-CccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCE
Q 047260 453 FADVGSIDENMESLLSHDGGDGRELYGTLKH----------SP-EHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKL 521 (784)
Q Consensus 453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~----------~~-~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~ 521 (784)
...++|.|+++++|+......+..+-...-. .. ....+...+.--+.....-+....|.|++.+|+|.+
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 3457899999999988763332221110000 00 000011111111112223345667999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 522 LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP---NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 522 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp---dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
||+|..-|.++||++...+....++.|...|.|+.|+. ..++|++++.|..|+|||+...-.+..++.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 99999999999999999999999999999999999986 457899999999999999998777888999999999999
Q ss_pred EEcCCC-CcEEEEEeCCCeEEEEeCCC---CeeEE-----eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260 599 DFHPKK-TDLFCFCDNDNEIQYWSINP---FLCTH-----ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS 669 (784)
Q Consensus 599 ~~sp~~-~~ll~sgs~dg~I~iwDl~~---~~~~~-----~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~ 669 (784)
.|.-.+ +.-.++|+.|..|.+--... +.... .-+..+.++.+.|..+++++++.|..|+|||+.+++..+.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 998765 45677888888776543331 22211 1235678899999999999999999999999999999999
Q ss_pred EeC---CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 670 LQG---HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 670 l~~---h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
|++ |++....+..+|.|.||++...| ++.++|+.+++|+....+|...|+.+.|.+|-++|++++.||.|.||.+.
T Consensus 634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 986 66788889999999999987755 99999999999999999999999999999999999999999999999986
Q ss_pred C
Q 047260 746 E 746 (784)
Q Consensus 746 ~ 746 (784)
.
T Consensus 714 ~ 714 (1080)
T KOG1408|consen 714 L 714 (1080)
T ss_pred h
Confidence 5
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.2e-22 Score=221.65 Aligned_cols=350 Identities=19% Similarity=0.249 Sum_probs=260.9
Q ss_pred eeeecCCCCCCcccccccccC--CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEE------
Q 047260 429 LMMNGSEGTGSLASASNLLED--IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEV------ 500 (784)
Q Consensus 429 ~~~~g~~~~~~~~ss~~~~~~--~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i------ 500 (784)
.....-.|++.-+-+..|... .+.+++++|-|..|++|...-.++...+-. .. ......+...|...
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~----e~-~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER----ED-SLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc----cc-ccccccCCceeeeeeeEEEE
Confidence 334444555555555555443 467888999999999998765543331111 00 00111112222222
Q ss_pred ----eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eee-----ecCCCCCCeEEEEEccCCCEEEEEeC
Q 047260 501 ----GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TES-----TPEDHKSVVTDVRFRPNSSQLATASV 569 (784)
Q Consensus 501 ----~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~-----~l~~h~~~It~i~fspdg~~Latgs~ 569 (784)
..+.||++.|.++.|+|++..|++++.|.++.||..++.. -+. ...+.........|+|+++.+++-+.
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence 2344999999999999999999999999999999877542 111 22234566889999999999999999
Q ss_pred CCeEEEEcCCCCcc--eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------eEEeecCCeeEEEE
Q 047260 570 DKSVRLWDAANPNF--CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-------CTHITKGGTAQVRF 640 (784)
Q Consensus 570 Dg~I~IWdl~~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-------~~~~~~~~v~~v~f 640 (784)
.|..++|...+... ....+.||.+.|.+|+|+|.|. ++++.+.|-+-|+|-.-..+ .-.+|....+|++|
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 99999999444332 3345679999999999999998 66677789999888654111 11233356788888
Q ss_pred ecCCCEEEEEECCCcEEEEECCC-------------------------------------------CeE-----------
Q 047260 641 QPRIGQLLAAASDKVVSIFDIET-------------------------------------------DRQ----------- 666 (784)
Q Consensus 641 sp~~~~Ll~~s~Dg~I~IwDl~t-------------------------------------------~~~----------- 666 (784)
-+..-.+++|..++.+++|+... +..
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 77656677777788889985420 000
Q ss_pred ----------------------EEEEeCCCCCEEEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCceEEEeccCCCce
Q 047260 667 ----------------------THSLQGHAELVNYICWDTNGDYLASVSQ-----N-LVKVWSMASGECIQELSSNGNQF 718 (784)
Q Consensus 667 ----------------------i~~l~~h~~~V~sl~~spdg~~Lasgsd-----d-~I~IwDl~t~~~i~~l~~~~~~I 718 (784)
++++.+|...|++++.+|+++++++++. . .|++|+..+...+..+..|.-.|
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV 575 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence 1223478889999999999999999872 2 79999999999999999999999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCceE-----EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSM-----TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-----~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.++|+||+++|++++.|.++.+|........ ....|...|.++.|+|++.+|+|+|.|.+|+||.
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 99999999999999999999999998655433 3668999999999999999999999999999994
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.6e-23 Score=216.86 Aligned_cols=278 Identities=17% Similarity=0.273 Sum_probs=230.8
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCc
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~ 582 (784)
..+.|+|+.|+|...+|++|+.|+.++||.++. ...+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 467899999999999999999999999998873 344555555678999999999998 89999999999999998866
Q ss_pred ce-eeeccCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 583 FC-SQAYTGHS-SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 583 ~~-~~~~~~h~-~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
.. +....++. ..+..+.+++++. +|+..+..|.|.+....+...+..++ +.+..++|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 32 22223333 3567788899988 77778889999999998887776554 88999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeCC-eEEEEeCCC------CceEEEeccCCCceEEEEEecCCCEE
Q 047260 659 FDIETDRQTHSLQGHAE-LVNYICWDTNGDYLASVSQN-LVKVWSMAS------GECIQELSSNGNQFHSCVFHPSYSTL 730 (784)
Q Consensus 659 wDl~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgsdd-~I~IwDl~t------~~~i~~l~~~~~~I~sl~fspdg~~L 730 (784)
||++...+++.+....+ .-+++|.++++.|||+|++. .|.|||..+ .+++.++..-...|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999999874322 44678888999999999976 999999654 46788887778889999999999998
Q ss_pred EEEECC--CeEEEEECCCCceEE-e---cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 731 LVVGGI--SSLELWNMAENKSMT-I---AAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 731 ~s~s~d--g~I~Iwdl~~~~~~~-~---~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.++.. ..+++-.+.+..... + ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 888764 579988887776652 2 23346799999999999999999999999996
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.2e-23 Score=206.99 Aligned_cols=272 Identities=18% Similarity=0.312 Sum_probs=217.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT 589 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~ 589 (784)
-.||.|++.|.+||+|+.||.|.|||+.+....+.+.+|..+|++++|+++|+.|+|+|.|..|++||+..+. +...+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988 444333
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260 590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIFDIE 662 (784)
Q Consensus 590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~ 662 (784)
..++|+.+.|+|...+.++++-.+..-.+.++.... ++..-. ....+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 568999999999887777776655555555554322 111111 122344689999999999999999999999
Q ss_pred CCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-------ce--EEEec--cCCCceEEEEEecCCCE
Q 047260 663 TDRQTHSLQGHA-ELVNYICWDTNGDYLASVSQN-LVKVWSMASG-------EC--IQELS--SNGNQFHSCVFHPSYST 729 (784)
Q Consensus 663 t~~~i~~l~~h~-~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-------~~--i~~l~--~~~~~I~sl~fspdg~~ 729 (784)
+.+++..++-.. ..|..+.++..|++|+.-+.| .|+.|+++.- ++ .+++. .....-.+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999988655 789999999999999887755 9999998631 11 11111 12234478999999999
Q ss_pred EEEEECC-CeEEEEECCCCceEE-ecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 730 LLVVGGI-SSLELWNMAENKSMT-IAAHE-NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 730 L~s~s~d-g~I~Iwdl~~~~~~~-~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+++++.. ..++||....|..+. +.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9888854 479999999999884 44555 567889999998888887 778999993
No 111
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=5.5e-22 Score=227.32 Aligned_cols=216 Identities=14% Similarity=0.245 Sum_probs=174.1
Q ss_pred EeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-----------eEEeecCCe
Q 047260 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-----------CTHITKGGT 635 (784)
Q Consensus 567 gs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-----------~~~~~~~~v 635 (784)
|+.++.|++|+..... ....+.+|...|.+++|+|+...+|++|+.|+.|++||+.... .+..+...|
T Consensus 50 GG~~gvI~L~~~~r~~-~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCc-eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 5678899999987644 6677889999999999999866799999999999999997531 123355789
Q ss_pred eEEEEecCCCEE-EEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc
Q 047260 636 AQVRFQPRIGQL-LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS 713 (784)
Q Consensus 636 ~~v~fsp~~~~L-l~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~ 713 (784)
.+++|+|++..+ ++++.|+.|+|||+++++.+..+. |...|.+++|+|+|.+|++++.+ .|+|||+++++.+.++.+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 999999998765 577889999999999998877776 66789999999999999988754 999999999999999999
Q ss_pred CCCceEEE-----EEecCCCEEEEEECCC----eEEEEECCC-CceEEecc---cCCceEEEEEeCCCCEEEEEECCCcE
Q 047260 714 NGNQFHSC-----VFHPSYSTLLVVGGIS----SLELWNMAE-NKSMTIAA---HENIISALAQSPVTGMVASASHDSSV 780 (784)
Q Consensus 714 ~~~~I~sl-----~fspdg~~L~s~s~dg----~I~Iwdl~~-~~~~~~~~---h~~~V~slafspdg~~LaSgs~DG~V 780 (784)
|.+.+... .|++++.+|++++.++ .|+|||++. .+.+.... +.+.+......+++.++++|+.|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 87765332 3458889999988774 799999985 44443333 33344444445568889999999999
Q ss_pred EEeC
Q 047260 781 KLWK 784 (784)
Q Consensus 781 ~IWd 784 (784)
++|+
T Consensus 288 r~~e 291 (568)
T PTZ00420 288 RYYQ 291 (568)
T ss_pred EEEE
Confidence 9996
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=216.81 Aligned_cols=282 Identities=16% Similarity=0.224 Sum_probs=228.3
Q ss_pred CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260 434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC 513 (784)
Q Consensus 434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l 513 (784)
.+|+..-+....-.+..-..+++||.||.|++|+.... +++.++++|.+.|..|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------------------------~~~~~f~AH~G~V~Gi 115 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------------------------ECIRTFKAHEGLVRGI 115 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------------------------hhhheeecccCceeeE
Confidence 35555555555555665556678999999999977432 3567788999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260 514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS 593 (784)
Q Consensus 514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~ 593 (784)
++.. ..+++++.|.+|+.|.++. .++.++ .....+..|.-+..+..++||+.+ |.|||..... ++..+.--..
T Consensus 116 ~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~D 188 (433)
T KOG0268|consen 116 CVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGAD 188 (433)
T ss_pred Eecc--cceEEecCCcceeeeeccC-Ccceee-eccccccccccccccccccccCce--eeecccccCC-ccceeecCCC
Confidence 9986 6788999999999999875 455665 345667788877778889998864 9999998655 5555555567
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEE
Q 047260 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSL 670 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l 670 (784)
.|.++.|+|....+|++|..|+.|.+||++....+.. .....+.|+|+|..-.++++..|..++.||++.. .++...
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence 8999999999999999999999999999998766654 3466788999997777888888999999999975 677788
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260 671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748 (784)
Q Consensus 671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~ 748 (784)
.+|...|.+|.|+|.|.-+++|+-| +|+||..+.+.....+.. .-..|.|+.|+-|..+|++|++|+.|++|.....+
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 8999999999999999999999966 999999987754433321 12458999999999999999999999999876543
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.7e-22 Score=222.74 Aligned_cols=260 Identities=15% Similarity=0.298 Sum_probs=219.7
Q ss_pred eEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEE-EEEcC-CCCEEEEEeCCCe
Q 047260 453 FADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTC-CHFSS-DGKLLASSGHDRK 530 (784)
Q Consensus 453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~-l~fsp-dg~~Lasgs~Dg~ 530 (784)
.+..+|.|+++++|.-.. ..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++
T Consensus 27 ~i~s~sRd~t~~vw~~~~------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKG------------------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EEeecCCCCceeeeeccC------------------------cccccceecccCcceeeccceeccccCcceEeecccce
Confidence 456788899999994422 223455667788888888 88876 5557999999999
Q ss_pred EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEE
Q 047260 531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCF 610 (784)
Q Consensus 531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~s 610 (784)
|.+|......++.++++|...|+|++...++. +++||.|.+++||.... +...+.+|...|+++.+.|++ .+++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEe
Confidence 99999999999999999999999999887776 99999999999998864 555689999999999999987 6889
Q ss_pred EeCCCeEEEEeCCC-CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 047260 611 CDNDNEIQYWSINP-FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYL 689 (784)
Q Consensus 611 gs~dg~I~iwDl~~-~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~L 689 (784)
|+.|..|++|.-.+ .+.+..|...|..+++-++ ..+++++.||.|++|++ +++++....+|...|+++....++..+
T Consensus 157 gsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 157 GSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLI 234 (745)
T ss_pred ccCcceeeeccCCchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeE
Confidence 99999999998743 2233445566777888776 56899999999999999 788999999999999999977778888
Q ss_pred EEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260 690 ASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 690 asgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~ 747 (784)
+++++| +++||+.. +|+..+..+...|+++.+-++|. |++|++||.|+||.....
T Consensus 235 vs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 888866 99999976 88888888888899999998887 999999999999987743
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.3e-23 Score=202.85 Aligned_cols=243 Identities=23% Similarity=0.361 Sum_probs=194.1
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcC
Q 047260 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl 578 (784)
..|++-|.++...-.|+.||||+.|++|+||.++.. ..+.++.+|.++|..++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 458999999988889999999999999999999753 57889999999999999976 7999999999999999998
Q ss_pred CCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260 579 ANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 579 ~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
+++.. ....+..|...|.+|+|.|.+-.+ .|+++++||.|.
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl--------------------------------------~LacasSDG~vs 129 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGL--------------------------------------LLACASSDGKVS 129 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccce--------------------------------------EEEEeeCCCcEE
Confidence 88753 234556899999999999875422 244555555555
Q ss_pred EEECCCC---eEEEEEeCCCCCEEEEEEcCC---C-----------CEEEEEe-CCeEEEEeCCCC--ceEEEeccCCCc
Q 047260 658 IFDIETD---RQTHSLQGHAELVNYICWDTN---G-----------DYLASVS-QNLVKVWSMASG--ECIQELSSNGNQ 717 (784)
Q Consensus 658 IwDl~t~---~~i~~l~~h~~~V~sl~~spd---g-----------~~Lasgs-dd~I~IwDl~t~--~~i~~l~~~~~~ 717 (784)
|++.+.. ...+....|.-.|++++|.|. | +.|++|+ |+.|+||+..++ +.-++|.+|.+.
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 5555433 122334568889999999885 4 4577776 559999999886 344568899999
Q ss_pred eEEEEEecCC----CEEEEEECCCeEEEEECCCC----ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 718 FHSCVFHPSY----STLLVVGGISSLELWNMAEN----KSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 718 I~sl~fspdg----~~L~s~s~dg~I~Iwdl~~~----~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+.++|.|.- .+|++++.||+|.||..... +...+......+..+.|+..|++|++++.|+.|.+|+
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999999975 46999999999999987632 1123445677899999999999999999999999995
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2e-22 Score=213.41 Aligned_cols=278 Identities=22% Similarity=0.324 Sum_probs=219.5
Q ss_pred ccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEE
Q 047260 445 NLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLAS 524 (784)
Q Consensus 445 ~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Las 524 (784)
.+.++..+ +..++.|+++.-|+...+.+.++..-.- +. ...++.++.+-. ++|...|.|++.|+||+|||+
T Consensus 149 als~d~~~-~fsask~g~i~kw~v~tgk~~~~i~~~~----ev--~k~~~~~~k~~r--~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 149 ALSPDDKR-VFSASKDGTILKWDVLTGKKDRYIIERD----EV--LKSHGNPLKESR--KGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred Eeeccccc-eeecCCCcceeeeehhcCcccccccccc----hh--hhhccCCCCccc--ccccceeEEEEEcCCCcEEEe
Confidence 33344444 4467889999999887776554433210 00 111222332222 489999999999999999999
Q ss_pred EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260 525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK 604 (784)
Q Consensus 525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~ 604 (784)
|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++... .+.++.+|.+.|..|....-+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRE 298 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhccc
Confidence 9999999999999999999999999999999999988899999999999999998765 677788999999999988665
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-C--------
Q 047260 605 TDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-H-------- 673 (784)
Q Consensus 605 ~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h-------- 673 (784)
. .+.+|+.|.++++|++.....+ ....+.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+... |
T Consensus 299 R-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~ 376 (479)
T KOG0299|consen 299 R-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDP 376 (479)
T ss_pred c-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccc
Confidence 5 7777889999999999543322 233457788888755 7899999999999999999988877642 2
Q ss_pred ---CCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC----ceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260 674 ---AELVNYICWDTNGDYLASVS-QNLVKVWSMASG----ECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 674 ---~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~----~~i~~l~~~~~~I~sl~fspdg~~L~s~s~ 735 (784)
...|++++..|...++++|+ ++.|++|-+..+ .++..+. -.+-|++++|+++|+.|+++..
T Consensus 377 ~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 22789999999999999999 559999999887 4555554 4578999999999997777644
No 116
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-21 Score=217.16 Aligned_cols=304 Identities=16% Similarity=0.258 Sum_probs=238.0
Q ss_pred EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 047260 454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVL 533 (784)
Q Consensus 454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~I 533 (784)
+.+|+.+|.+.+|+...+. .+.+++++.+.|++|.=+|--+.+|.|..+|+|.|
T Consensus 175 IvvGs~~G~lql~Nvrt~K--------------------------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii 228 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGK--------------------------VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII 228 (910)
T ss_pred EEEeecCCcEEEEEeccCc--------------------------EEEEecccccceeEeccCCcceEEEEeccCceEEE
Confidence 3478999999999885443 67788999999999999998889999999999999
Q ss_pred EECCCCceeeecCCCCCCeEEEEEccCCCE-EEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe
Q 047260 534 WNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD 612 (784)
Q Consensus 534 Wd~~t~~~~~~l~~h~~~It~i~fspdg~~-Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs 612 (784)
++++..+.+.+++..-+.|+.++|..||+. +++|+..|.+.+||++..+........|.+.|....|.|..+ ++++.+
T Consensus 229 fNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~ 307 (910)
T KOG1539|consen 229 FNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAG 307 (910)
T ss_pred EEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeecc
Confidence 999999999999755699999999999875 566667799999999987766666668999999999998776 888888
Q ss_pred CCCeEEEEeCCCCe----eEE---eecCCeeEEEEe-cCCCE--------------------------------------
Q 047260 613 NDNEIQYWSINPFL----CTH---ITKGGTAQVRFQ-PRIGQ-------------------------------------- 646 (784)
Q Consensus 613 ~dg~I~iwDl~~~~----~~~---~~~~~v~~v~fs-p~~~~-------------------------------------- 646 (784)
.|..+++|=.+++. .++ .|..+..+++|. ..+..
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 89988887544211 111 111222233322 22222
Q ss_pred --------------------------EEEEE-CCCcEEEEECCCCeE-EEEEe-----CCCCCEEEEEEcCCCCEEEEEe
Q 047260 647 --------------------------LLAAA-SDKVVSIFDIETDRQ-THSLQ-----GHAELVNYICWDTNGDYLASVS 693 (784)
Q Consensus 647 --------------------------Ll~~s-~Dg~I~IwDl~t~~~-i~~l~-----~h~~~V~sl~~spdg~~Lasgs 693 (784)
++++. .+..++.|+.++... .+.+. .....+++++.++.|++.+.|.
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 23333 345566666665443 22222 1236789999999999999887
Q ss_pred C-CeEEEEeCCCCceEEEe---ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-------------------
Q 047260 694 Q-NLVKVWSMASGECIQEL---SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM------------------- 750 (784)
Q Consensus 694 d-d~I~IwDl~t~~~i~~l---~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~------------------- 750 (784)
. |.|-+|++.+|-....+ ..|..+|+.++....++.+++++.+|-+++||..+...+
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 4 59999999999888888 489999999999999999999999999999998875411
Q ss_pred -----------------------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 751 -----------------------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 751 -----------------------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 1346999999999999999999999999999998
No 117
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.4e-22 Score=219.79 Aligned_cols=288 Identities=19% Similarity=0.248 Sum_probs=231.4
Q ss_pred CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC--EEEEEeCC
Q 047260 493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS--QLATASVD 570 (784)
Q Consensus 493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~--~Latgs~D 570 (784)
+.|+.++-..+++|++.|.||...|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.||+|+|.+. .||++-.+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 456667778899999999999999999999999999999999999999999984 567899999999554 44444333
Q ss_pred CeEEEEcCCCC------------------------------------cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC
Q 047260 571 KSVRLWDAANP------------------------------------NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614 (784)
Q Consensus 571 g~I~IWdl~~~------------------------------------~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d 614 (784)
. +.|-+..-+ ..-+.....|...|..+.||..|.++..++..+
T Consensus 465 ~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 C-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred c-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 3 444432211 001223446788999999999999776666543
Q ss_pred --CeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 047260 615 --NEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYL 689 (784)
Q Consensus 615 --g~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~L 689 (784)
..|.|+++...... ...++.+.++.|+|...+|++++. ..|+|||+.....++.+......|..++.+|.|.-|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 46888888754443 344588999999999988888776 789999999888888887778889999999999988
Q ss_pred EEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE------CCCCceE----EecccCC
Q 047260 690 ASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN------MAENKSM----TIAAHEN 757 (784)
Q Consensus 690 asgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd------l~~~~~~----~~~~h~~ 757 (784)
+.++.+ .+..||+.-. ++.+++..|...+++++|++...++++|+.||++.||. +..+..+ .+.+|..
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 888855 9999999754 67888999999999999999999999999999998884 2222222 5667766
Q ss_pred c----eEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 758 I----ISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 758 ~----V~slafspdg~~LaSgs~DG~V~IW 783 (784)
. |..+.|+|...+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 9999999999999999999999998
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.1e-22 Score=223.39 Aligned_cols=272 Identities=15% Similarity=0.257 Sum_probs=222.6
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~ 582 (784)
.+|+..-+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 359999999999999999999999999999998765 4555554588888888875 5599999999999999998866
Q ss_pred ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260 583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659 (784)
Q Consensus 583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw 659 (784)
....+...+-++.+++|+-+|. +++.|+.|-.|++.+... .+.++.++++|.++.|+|.+..|++.+.||.|+||
T Consensus 88 -~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 -EDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred -ccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 3344555678899999999887 777888899999998865 45566677999999999999999999999999999
Q ss_pred ECCCCeEEEEEeC-------C-CCCEEEEEEcCC-CCEEEEEeCCeEEEEeCCCCceEEEecc--CCCceEEEEEecCCC
Q 047260 660 DIETDRQTHSLQG-------H-AELVNYICWDTN-GDYLASVSQNLVKVWSMASGECIQELSS--NGNQFHSCVFHPSYS 728 (784)
Q Consensus 660 Dl~t~~~i~~l~~-------h-~~~V~sl~~spd-g~~Lasgsdd~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~ 728 (784)
|+.++.+.+.+.+ . ...+..++|+|+ |.+++.+.++.|++|+..+++....+.. +...+.++.|+|.|.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9999887776643 1 345677899998 5666777788999999999998888764 345589999999999
Q ss_pred EEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 729 TLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 729 ~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
||++++.+|.|.|||+++-.. ......|.+++|.|+.+.|-.-...|...+
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred EEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 999999999999999998222 334567999999999886655544554433
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-22 Score=214.40 Aligned_cols=250 Identities=19% Similarity=0.373 Sum_probs=203.7
Q ss_pred eEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC----------ceeeecCCCCCCeEEEEEcc-CCCEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTL----------QTESTPEDHKSVVTDVRFRP-NSSQLA 565 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~----------~~~~~l~~h~~~It~i~fsp-dg~~La 565 (784)
.++...-.|.+.|+.+.+-|. ..++|+.+..+.|.|||..+. .+-.++.+|...-+.++|++ ..-.|+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 344445569999999999994 557788889999999998642 22236778998888999999 445799
Q ss_pred EEeCCCeEEEEcCCCCcc------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--C---eeEEeecCC
Q 047260 566 TASVDKSVRLWDAANPNF------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--F---LCTHITKGG 634 (784)
Q Consensus 566 tgs~Dg~I~IWdl~~~~~------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~---~~~~~~~~~ 634 (784)
+++.|++|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||+++ . ..+..+.+.
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 999999999999975432 34567899999999999999999999999999999999994 2 334556689
Q ss_pred eeEEEEecCCCEEE-EEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEeCCCC-----
Q 047260 635 TAQVRFQPRIGQLL-AAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGD-YLASVS-QNLVKVWSMASG----- 705 (784)
Q Consensus 635 v~~v~fsp~~~~Ll-~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~-~Lasgs-dd~I~IwDl~t~----- 705 (784)
+.|++|+|.+..++ +++.|++|.+||+|+. ++++++.+|...|.+|.|+|+.. .|++++ |+.+.|||+..-
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999877655 5555999999999985 68899999999999999999765 555555 559999999641
Q ss_pred ---------ceEEEeccCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCC
Q 047260 706 ---------ECIQELSSNGNQFHSCVFHPSYST-LLVVGGISSLELWNMAEN 747 (784)
Q Consensus 706 ---------~~i~~l~~~~~~I~sl~fspdg~~-L~s~s~dg~I~Iwdl~~~ 747 (784)
+++..-.+|...|..+.|+|..++ |++++.|+.+.||.+...
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 345666789999999999999987 667778899999998743
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.3e-22 Score=198.98 Aligned_cols=290 Identities=16% Similarity=0.276 Sum_probs=231.4
Q ss_pred ceeeeecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC
Q 047260 427 KTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR 506 (784)
Q Consensus 427 k~~~~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H 506 (784)
+..+..-..|+..-+|.+.-. ....++.+.|.|.+.++|....+. ++..+.+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~-~tqpi~gtASADhTA~iWs~Esg~--------------------------CL~~Y~GH 189 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAAD-STQPICGTASADHTARIWSLESGA--------------------------CLATYTGH 189 (481)
T ss_pred eEeehhhhcccccceeeehhh-cCCcceeecccccceeEEeecccc--------------------------ceeeeccc
Confidence 334444445555555655542 233466778899999999764433 45668899
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEC------CC----------------------------------CceeeecC
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNM------DT----------------------------------LQTESTPE 546 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~------~t----------------------------------~~~~~~l~ 546 (784)
.+.|+||.|++.+.++++++.|++..||.. .. ..++..+.
T Consensus 190 ~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 190 TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee
Confidence 999999999999999999999999999962 10 12445667
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-C
Q 047260 547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-F 625 (784)
Q Consensus 547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~ 625 (784)
+|...|.++.|...|..++++++|.+..+||++++. ++..+.+|..+.+.++-+|... ++++.+.|.+.++||++. .
T Consensus 270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-VVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred ccccceEehhhhcCcceeeeeeccccceeeeeccCc-eeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhc
Confidence 899999999999999999999999999999999977 8889999999999999999866 899999999999999984 2
Q ss_pred eeEE---eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEE
Q 047260 626 LCTH---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVW 700 (784)
Q Consensus 626 ~~~~---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~Iw 700 (784)
..+. .+...++++.|..+ ..+++++.|.+|+|||+++. .++.++. ...+++.++.+..+.+|+.--|+ .|++|
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEE
Confidence 3333 34467888888876 56889999999999999986 4556665 67789999999999999998888 99999
Q ss_pred eCCCCceEE----EeccCCCceEEEEEecCCC--EEEEEECCCeEEEEECCCC
Q 047260 701 SMASGECIQ----ELSSNGNQFHSCVFHPSYS--TLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 701 Dl~t~~~i~----~l~~~~~~I~sl~fspdg~--~L~s~s~dg~I~Iwdl~~~ 747 (784)
|+...+..+ .-.+|...|.|++|..+.. .|++++-|..+.-|++...
T Consensus 426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 997654322 2347888999999986643 4899999999999998654
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.6e-22 Score=208.91 Aligned_cols=238 Identities=19% Similarity=0.335 Sum_probs=195.8
Q ss_pred CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce---------eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 047260 547 DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC---------SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616 (784)
Q Consensus 547 ~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~---------~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~ 616 (784)
.|.+.|+.+.+-| +..++++.+..+.|.|||....... ...+.+|...-+.++|++.....+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 6999999999999 5567777888999999998753211 22577899888999999999889999999999
Q ss_pred EEEEeCCCCe----------eEEeecCCeeEEEEecCCCE-EEEEECCCcEEEEECC--CCeEEEEEeCCCCCEEEEEEc
Q 047260 617 IQYWSINPFL----------CTHITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIE--TDRQTHSLQGHAELVNYICWD 683 (784)
Q Consensus 617 I~iwDl~~~~----------~~~~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~--t~~~i~~l~~h~~~V~sl~~s 683 (784)
|++||+.... ....+...|..++|++.... +.+++.|+.+.|||+| +.++.+...+|...|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997422 22334567888999987655 5566778999999999 567778888999999999999
Q ss_pred CC-CCEEEEEe-CCeEEEEeCCCC-ceEEEeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCc-----------
Q 047260 684 TN-GDYLASVS-QNLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAENK----------- 748 (784)
Q Consensus 684 pd-g~~Lasgs-dd~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~----------- 748 (784)
|- +.+||+++ |++|++||+|+- +++.++.+|...|.++.|+|... .|++++.|+.+.|||+..-.
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 95 55677787 559999999985 68899999999999999999865 57778889999999986411
Q ss_pred ---e-EEecccCCceEEEEEeCCCC-EEEEEECCCcEEEeC
Q 047260 749 ---S-MTIAAHENIISALAQSPVTG-MVASASHDSSVKLWK 784 (784)
Q Consensus 749 ---~-~~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IWd 784 (784)
. +...+|...|..+.|+|... .|+|++.|+.+.||+
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 1 24458999999999999877 678889999999996
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-22 Score=222.13 Aligned_cols=272 Identities=18% Similarity=0.336 Sum_probs=211.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeecCC---CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCC
Q 047260 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----QTESTPED---HKSVVTDVRFRP-NSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~---h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~ 579 (784)
..+..|...++-.-|+.++.. .++||.+... ++...+.. -...+.+|.|.. +.++|||++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 345666777887778777743 5777766532 12112111 113456788886 67899999999999999998
Q ss_pred C--CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCC-EEEEEECC
Q 047260 580 N--PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIG-QLLAAASD 653 (784)
Q Consensus 580 ~--~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~-~Ll~~s~D 653 (784)
. .......+..|...|.+++|++...++|++|+.||.|++||++..+....+. ..+.+|.|+|... .++++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 3335667889999999999999999999999999999999999766655554 5688899999654 56666667
Q ss_pred CcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce--EEEeccCCCceEEEEEecCCCE
Q 047260 654 KVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC--IQELSSNGNQFHSCVFHPSYST 729 (784)
Q Consensus 654 g~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~ 729 (784)
|.|.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.| .|+|||+.+.+. +.++ ....+|.++.|-|...+
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccc
Confidence 99999999975 5677788999999999999999999999966 999999987643 3333 23478999999999877
Q ss_pred EE-EEEC--CCeEEEEECCCCceE--EecccCCceEEEEEeC-CCCEEEEEECCCcEE
Q 047260 730 LL-VVGG--ISSLELWNMAENKSM--TIAAHENIISALAQSP-VTGMVASASHDSSVK 781 (784)
Q Consensus 730 L~-s~s~--dg~I~Iwdl~~~~~~--~~~~h~~~V~slafsp-dg~~LaSgs~DG~V~ 781 (784)
.+ +++. |-.|+|||++..-.. .+..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 44 4433 558999999876543 7789999999999986 445899999999864
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-20 Score=206.21 Aligned_cols=281 Identities=16% Similarity=0.252 Sum_probs=230.8
Q ss_pred eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeecCCC-CCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-QTESTPEDH-KSVVTDVRFRPNSSQLATASVDKSVR 574 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h-~~~It~i~fspdg~~Latgs~Dg~I~ 574 (784)
....+.+.--...|+|++|+.+.+.||.+-.||.|-||++... -....+.++ ...|..++|++ +..|++.+.+|.|.
T Consensus 15 vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 15 VHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSIT 93 (691)
T ss_pred EEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEE
Confidence 3344445556788999999999999999999999999999853 333445444 46799999994 55789999999999
Q ss_pred EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-----ecCCeeEEEEecCCCEEEE
Q 047260 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-----TKGGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-----~~~~v~~v~fsp~~~~Ll~ 649 (784)
-||+.+.+ ....+....+.|++++.+|.+. .++.|++||.++.++..+...... -++.+.++.|+|++..++.
T Consensus 94 EwDl~~lk-~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 94 EWDLHTLK-QKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred EEecccCc-eeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 99999877 5566667788999999999886 666777899999999887655433 2478999999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEEe-------C-CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEE
Q 047260 650 AASDKVVSIFDIETDRQTHSLQ-------G-HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSC 721 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t~~~i~~l~-------~-h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl 721 (784)
|+.||.|++||+.++..++... . ....|.++.|-.++.++..-+.|+|.+||...+..+..+..|...|.++
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL 251 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence 9999999999999987776322 1 3345778888777766555567799999999999999999999999999
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCceE-----EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 722 VFHPSYSTLLVVGGISSLELWNMAENKSM-----TIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-----~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
+..+++.++++++.|+.|..|...+++.. ....|...|.+++..++ .|++|+.|+.+.+
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999999999988777541 34578889999999876 8999999998865
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.2e-23 Score=229.00 Aligned_cols=251 Identities=23% Similarity=0.403 Sum_probs=219.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+.... ....+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceee
Confidence 34455556666788888653 44688899999987788999999999999999998766 555688999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~ 675 (784)
.|++... ++++|..+|.|++||++..+.++.+. ..+..+.|+|.+.+.+.++.|+.+++||.+...+.+.+.+|..
T Consensus 77 ~f~~~E~-LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTSER-LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcchh-hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 9998865 88999999999999999877665544 5678899999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eec
Q 047260 676 LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA 753 (784)
Q Consensus 676 ~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~ 753 (784)
.|.++.|+|+|++++++++| .++|||+..|+.+.+|..|...+..+.|+|..-.++.|+.|++|++||+++-+.+ ...
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 99999999999999999986 9999999999999999999999999999999999999999999999999988777 344
Q ss_pred ccCCceEEEEEeCCCCEEEEEECC
Q 047260 754 AHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 754 ~h~~~V~slafspdg~~LaSgs~D 777 (784)
.....|.+++|+|++..+++|..+
T Consensus 236 ~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCceeeecCchh
Confidence 457789999999999998888654
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=6.6e-20 Score=195.69 Aligned_cols=284 Identities=17% Similarity=0.328 Sum_probs=222.7
Q ss_pred ceeEEeEeecCC-CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260 496 TFCEVGCIRSRN-SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574 (784)
Q Consensus 496 ~~~~i~~l~~H~-~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~ 574 (784)
-++....+..++ .-|.|++|.++|. ++||.++|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|.
T Consensus 234 l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~ 311 (626)
T KOG2106|consen 234 LVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKII 311 (626)
T ss_pred eEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEE
Confidence 334444444433 5699999999997 77899999999999998888888779999999999999986 55599999999
Q ss_pred EEcCCCCcc---------------------------------------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260 575 LWDAANPNF---------------------------------------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN 615 (784)
Q Consensus 575 IWdl~~~~~---------------------------------------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg 615 (784)
.||-.-.+. ......+|......++.+|+.+ .+++|+.|+
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk 390 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDK 390 (626)
T ss_pred eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcc
Confidence 998321000 0011236777888999999876 788999999
Q ss_pred eEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260 616 EIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN 695 (784)
Q Consensus 616 ~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd 695 (784)
.+++|+-....-...+..+..++.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|+|+|.+||.++.|
T Consensus 391 ~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 391 HVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred eEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCC
Confidence 99999955566667788999999999999 999999999999999999665554444 8899999999999999999966
Q ss_pred -eEEEEeCCCC-ceEEEe-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-----------------------
Q 047260 696 -LVKVWSMASG-ECIQEL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS----------------------- 749 (784)
Q Consensus 696 -~I~IwDl~t~-~~i~~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~----------------------- 749 (784)
.|+||.+... ...... +.+..+|+.+.|++|+.+|.+-+.|-.|..|.....+.
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~ 548 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG 548 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc
Confidence 9999988654 333222 34458999999999999999999999999994332110
Q ss_pred -----------------------------------------EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 750 -----------------------------------------MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 750 -----------------------------------------~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
..+.+|.+.|++++|..+...|++.+.|.+|..|+
T Consensus 549 s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 549 SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 01234777788888887777777777888888885
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=214.05 Aligned_cols=271 Identities=23% Similarity=0.373 Sum_probs=207.6
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEECCCCcee------eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260 513 CHFSS---DGKLLASSGHDRKVVLWNMDTLQTE------STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF 583 (784)
Q Consensus 513 l~fsp---dg~~Lasgs~Dg~I~IWd~~t~~~~------~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~ 583 (784)
+.|++ ...+||.+.+||.|.++|....... .....|...|.++.|.|....|++++.|.++++||++..+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~- 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR- 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce-
Confidence 56665 3348999999999999998754332 4556899999999999977889999999999999999876
Q ss_pred eee--eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--------------------eE-----Ee-----e
Q 047260 584 CSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--------------------CT-----HI-----T 631 (784)
Q Consensus 584 ~~~--~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--------------------~~-----~~-----~ 631 (784)
+.. .+.+|...|.+++|.|.+..+|++|+.||.|.|||++... .. .. .
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 443 3789999999999999999999999999999999986211 00 00 0
Q ss_pred cCCeeE---EEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE--------EeCC---CCCEEEEEEcCCCCEEE-EEeCC
Q 047260 632 KGGTAQ---VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS--------LQGH---AELVNYICWDTNGDYLA-SVSQN 695 (784)
Q Consensus 632 ~~~v~~---v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~--------l~~h---~~~V~sl~~spdg~~La-sgsdd 695 (784)
...+.. +.+..|...|++++. |+.|+|||+++...... +..| ...+.+++.+..|.+|+ +|.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 012223 456667788888888 99999999997643322 2223 33577888888777655 56677
Q ss_pred eEEEEeCCCC--ceEEEeccCCCc--eEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCC-
Q 047260 696 LVKVWSMASG--ECIQELSSNGNQ--FHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVT- 768 (784)
Q Consensus 696 ~I~IwDl~t~--~~i~~l~~~~~~--I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg- 768 (784)
.|++|++.+. .++..+.++... ...-..+|++.++++++.|...++|.+.....- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 9999999864 344455444222 233457899999999999999999999887644 677999999999999854
Q ss_pred CEEEEEECCCcEEEeC
Q 047260 769 GMVASASHDSSVKLWK 784 (784)
Q Consensus 769 ~~LaSgs~DG~V~IWd 784 (784)
.-+++|++|.+++||+
T Consensus 374 t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWR 389 (720)
T ss_pred CCceeeccCcceEEEe
Confidence 3578889999999996
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.6e-21 Score=205.48 Aligned_cols=239 Identities=17% Similarity=0.238 Sum_probs=202.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC-----
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN----- 580 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~----- 580 (784)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+-|+.+|+||+.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 467899999999999999988999999999999999999999999999999999999999999999999998742
Q ss_pred ---CcceeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCC
Q 047260 581 ---PNFCSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 581 ---~~~~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
.......+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+.. +...+.+++++|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 123567788999999999988763 45788999999999999998877654 457789999999999999999999
Q ss_pred cEEEEECCCC----------------eEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260 655 VVSIFDIETD----------------RQTHSLQGHAE--LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG 715 (784)
Q Consensus 655 ~I~IwDl~t~----------------~~i~~l~~h~~--~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~ 715 (784)
.|.+.++... ..+..+.+|.+ .|+|++.+-||.+|++|+.+ .|+|||+.+..+++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9999887542 24556778888 99999999999999999965 99999999999999998777
Q ss_pred CceEEEEEecCCCEEEEEECC-CeEEEEEC
Q 047260 716 NQFHSCVFHPSYSTLLVVGGI-SSLELWNM 744 (784)
Q Consensus 716 ~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl 744 (784)
++|+.+.+.|-.+.++.+... ..+-.|++
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHh
Confidence 899999997765545443322 23444443
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.4e-21 Score=193.14 Aligned_cols=261 Identities=14% Similarity=0.218 Sum_probs=206.7
Q ss_pred cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260 440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG 519 (784)
Q Consensus 440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg 519 (784)
.++++.|.+....|+ ++|||+++++|+..... +...-.|..+|.+|+|.++
T Consensus 15 ~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~---------------------------l~~~~~~~~plL~c~F~d~- 65 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLL-VSSWDGSLRLYDVPANS---------------------------LKLKFKHGAPLLDCAFADE- 65 (323)
T ss_pred ceeeEEEcCcCCcEE-EEeccCcEEEEeccchh---------------------------hhhheecCCceeeeeccCC-
Confidence 356667765555555 68899999999874431 1111238999999999874
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~ 599 (784)
..+++|+.||.|+++|+.++... .+-.|..+|.||.+++....+++|++|++|++||.+... ....+ .....|.++.
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~-d~~kkVy~~~ 142 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF-DQGKKVYCMD 142 (323)
T ss_pred ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc-ccCceEEEEe
Confidence 57899999999999999987764 445799999999999988899999999999999998633 33333 2345899988
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeE-----EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC----eEEEEE
Q 047260 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCT-----HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD----RQTHSL 670 (784)
Q Consensus 600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-----~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~----~~i~~l 670 (784)
...+ .|++|..+..|.+||+++.... ..++-.+.+|++.|.+.-+++++-||.|.+=.++.. +.-..|
T Consensus 143 v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 143 VSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred ccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence 7633 6777888999999999975443 334567889999998888999999999988776654 344455
Q ss_pred eCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260 671 QGHAE---------LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 671 ~~h~~---------~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~ 735 (784)
+.|.. +|++|+|+|-...|++|+ ||.|.+||+.+.+.+..+......|.+++|+.+|..|++++.
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 55532 789999999888888877 569999999999999999888888999999999999999876
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.1e-21 Score=208.49 Aligned_cols=281 Identities=15% Similarity=0.293 Sum_probs=224.3
Q ss_pred CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260 437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS 516 (784)
Q Consensus 437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs 516 (784)
++-++.++.+.... +.+.+| -.+.|++|+....++ | ++...+-++. ...-|.+|.+.
T Consensus 418 HGEvVcAvtIS~~t-rhVyTg-GkgcVKVWdis~pg~-k-------------------~PvsqLdcl~-rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTISNPT-RHVYTG-GKGCVKVWDISQPGN-K-------------------SPVSQLDCLN-RDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEecCCc-ceeEec-CCCeEEEeeccCCCC-C-------------------CccccccccC-cccceeeeEec
Confidence 34455555554444 444445 357899998754421 1 1111122221 45669999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260 517 SDGKLLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP 594 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~ 594 (784)
|||+.|++|+.-.+|.|||+..- .....+....-.+.+++.+||.+..++|+.||.|.|||+.+.. .++.+.+|.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC
Confidence 99999999999999999999754 3334444445678889999999999999999999999999855 88999999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG 672 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~ 672 (784)
+.||.++++|. .|-+|+-|.+|+.||++.++.+.. +...|.++.++|.+.++++|-.++.|.|...... ..+.+.-
T Consensus 554 ascIdis~dGt-klWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl 631 (705)
T KOG0639|consen 554 ASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL 631 (705)
T ss_pred ceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc
Confidence 99999999987 677899999999999998877654 4578999999999999999999999998887643 3445666
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260 673 HAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 673 h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl 744 (784)
|+..|.++.|.+.|+++++.+. +.+..|...-|..+...+.. +.|.+|.++.+.++|++|+.|....||.+
T Consensus 632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999998874 59999999999888777554 78999999999999999999998888865
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=8.3e-23 Score=225.73 Aligned_cols=237 Identities=22% Similarity=0.407 Sum_probs=215.1
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
.+.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||
T Consensus 19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 34455567999999999977889999999999999999988888888999999999999999999999999999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCC
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
++..+ .++.+.+|...+.++.|+|.+. ++++++.|+.+++||++..-|.+.+++ .+.++.|+|+|.+++.++.|.
T Consensus 99 leeAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 99 LEEAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 99866 6788999999999999999987 568999999999999998888877774 466788999999999999999
Q ss_pred cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260 655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
.++|||+..++....|..|...+..+.|+|...+++.|+.+ +|++||+++.+.+.........|.+..|+|++..+++|
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 99999999999999999999999999999999999999866 99999999999998888888899999999999877777
Q ss_pred ECC
Q 047260 734 GGI 736 (784)
Q Consensus 734 s~d 736 (784)
..+
T Consensus 257 ~q~ 259 (825)
T KOG0267|consen 257 EQI 259 (825)
T ss_pred chh
Confidence 655
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.4e-21 Score=191.89 Aligned_cols=252 Identities=15% Similarity=0.296 Sum_probs=180.5
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC----CCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEc
Q 047260 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD----TLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWD 577 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWd 577 (784)
.+|.+-|+|+.|.+.|+.+|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4688999999999999999999999999999964 3456667789999999999986 689999999999999997
Q ss_pred CCCCc--------ceeeeccCCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEE
Q 047260 578 AANPN--------FCSQAYTGHSSPIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL 648 (784)
Q Consensus 578 l~~~~--------~~~~~~~~h~~~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll 648 (784)
-.... ....++....+.|+.|.|.|... ..+++++.||.|+||+.-...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~---------------------- 147 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM---------------------- 147 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc----------------------
Confidence 53111 01223334445566666665422 234444455555555432110
Q ss_pred EEECCCcEEEEECCCC-e-EEEEEeCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEeCCCC----ceEEEecc
Q 047260 649 AAASDKVVSIFDIETD-R-QTHSLQGHAELVNYICWDTN---GDYLASVSQN------LVKVWSMASG----ECIQELSS 713 (784)
Q Consensus 649 ~~s~Dg~I~IwDl~t~-~-~i~~l~~h~~~V~sl~~spd---g~~Lasgsdd------~I~IwDl~t~----~~i~~l~~ 713 (784)
.++-|.+... + .+.....+..+..|+.|+|. ..+|++|+++ .++||....+ ..+.++.+
T Consensus 148 ------nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 148 ------NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ------ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 0111111100 0 00011136667889999974 4588998876 8999987543 35677889
Q ss_pred CCCceEEEEEecCC----CEEEEEECCCeEEEEECCCCc--------------------eE-EecccCCceEEEEEeCCC
Q 047260 714 NGNQFHSCVFHPSY----STLLVVGGISSLELWNMAENK--------------------SM-TIAAHENIISALAQSPVT 768 (784)
Q Consensus 714 ~~~~I~sl~fspdg----~~L~s~s~dg~I~Iwdl~~~~--------------------~~-~~~~h~~~V~slafspdg 768 (784)
|..+|++++|.|+- ..|++++.|| |+||.+.... .+ .+..|.+.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999963 4689999999 9999987411 11 356899999999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 047260 769 GMVASASHDSSVKLWK 784 (784)
Q Consensus 769 ~~LaSgs~DG~V~IWd 784 (784)
..|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=1.7e-19 Score=192.49 Aligned_cols=272 Identities=17% Similarity=0.205 Sum_probs=213.5
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee---cCCC-CCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST---PEDH-KSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~---l~~h-~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
+..++.|..+.|+|.+..|++.+..+.+.+|+.+.+...++ ++.+ +..|.|++|.++|. ++||..+|.|.||+..
T Consensus 197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 34667899999999666555555578999999998766554 3332 36799999999886 7899999999999998
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--------------ee------------------
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--------------LC------------------ 627 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--------------~~------------------ 627 (784)
+........ .|.+.|.+++...+|. +++|+.|..|..||-+-. +.
T Consensus 276 ~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 276 TNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred CceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 876544555 9999999999998885 556999999999984200 00
Q ss_pred -----------EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 047260 628 -----------THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QN 695 (784)
Q Consensus 628 -----------~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd 695 (784)
+..+......++.+|+.+.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|.| .++.|. .+
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccc
Confidence 001112334567788889999999999999999 444544433 56788999999999 777776 66
Q ss_pred eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--Ee-cccCCceEEEEEeCCCCEEE
Q 047260 696 LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TI-AAHENIISALAQSPVTGMVA 772 (784)
Q Consensus 696 ~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~-~~h~~~V~slafspdg~~La 772 (784)
...|.|.++...+..-.. ..++.++.|+|+|.+|++++.|+.|+||.+..+... .. ..|..+|+.+.|++|+++|.
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 999999999666655555 889999999999999999999999999998765443 22 23448999999999999999
Q ss_pred EEECCCcEEEeC
Q 047260 773 SASHDSSVKLWK 784 (784)
Q Consensus 773 Sgs~DG~V~IWd 784 (784)
+-+.|-.|..|+
T Consensus 508 ~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 508 SNSGDYEILYWK 519 (626)
T ss_pred eccCceEEEEEc
Confidence 999999999994
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=210.91 Aligned_cols=235 Identities=17% Similarity=0.261 Sum_probs=203.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-
Q 047260 547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF- 625 (784)
Q Consensus 547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~- 625 (784)
.|....+.|+|.|+|.+|++|+.||.|++|+.........++..+...|.+++.... .|++|+.++.|.+|.+..+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence 688899999999999999999999999999987653233334337788888887544 7889999999999999764
Q ss_pred --eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeC
Q 047260 626 --LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSM 702 (784)
Q Consensus 626 --~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl 702 (784)
..+..+.-++.+++|+-+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+ +|.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 45677888999999999999999999999999999999999999999999999999999999999987 669999999
Q ss_pred CCCceEEEeccC--------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Ee--cccCCceEEEEEeCCCCEE
Q 047260 703 ASGECIQELSSN--------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TI--AAHENIISALAQSPVTGMV 771 (784)
Q Consensus 703 ~t~~~i~~l~~~--------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~--~~h~~~V~slafspdg~~L 771 (784)
.++.+..++.+- ...+..++|+|++..+++...|+.|++|+..+.... .+ ..+...+.++.|+|.|.||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 999887776532 345678899999999999999999999999998765 22 3455559999999999999
Q ss_pred EEEECCCcEEEeC
Q 047260 772 ASASHDSSVKLWK 784 (784)
Q Consensus 772 aSgs~DG~V~IWd 784 (784)
|+++.||.|.|||
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999999997
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-20 Score=197.32 Aligned_cols=252 Identities=13% Similarity=0.235 Sum_probs=202.0
Q ss_pred CeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260 529 RKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 606 (784)
..+.+||+.+|.....+++.. ..-.++..- .+.+++++.. ...|.+|.+....... ...-..++|.++.-+|.|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~- 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGY- 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCce-
Confidence 459999999999998887652 211122111 3456666654 4578999987654333 2334568899999999986
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECC---------CCeEEEEEeCCC
Q 047260 607 LFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIE---------TDRQTHSLQGHA 674 (784)
Q Consensus 607 ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~---------t~~~i~~l~~h~ 674 (784)
+++.|...|.|++|.+.++..+..+. ..++|+.|+-++.+|++++.||.|.+|++- +-++++.|..|.
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 55566689999999999988765544 679999999999999999999999999763 346788999999
Q ss_pred CCEEEEEEcCC--CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc---
Q 047260 675 ELVNYICWDTN--GDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK--- 748 (784)
Q Consensus 675 ~~V~sl~~spd--g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~--- 748 (784)
-+|+++...+. ..+|++++.| ++++||+..+..+.++... ..+.+|+.+|-+..+++|+.+|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 99999988765 3578888866 9999999999999888654 778999999999999999999999988765432
Q ss_pred --------------eEEecccCC--ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 749 --------------SMTIAAHEN--IISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 749 --------------~~~~~~h~~--~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 124668888 999999999999999999999999997
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=5.5e-20 Score=184.99 Aligned_cols=303 Identities=19% Similarity=0.315 Sum_probs=224.8
Q ss_pred CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC-
Q 047260 439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS- 517 (784)
Q Consensus 439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp- 517 (784)
..+.+........+++..|..|+.+.+|+.....+-+.-.-..+. ....-...-.+|.-.|.++.|-|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~-----------~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH-----------KCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe-----------eeeccccCCccceeeeeeeEEeee
Confidence 334455555667888889999999999998765532221111100 00001112246888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP---NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP 594 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp---dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~ 594 (784)
|...+.+++.|.+++|||.++......|+ ..+.|..-+|+| ...+||+|..|-.|++-|+.++. +..++.+|...
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~ 190 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDG 190 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCc
Confidence 66689999999999999999998888874 677899999998 34577888888999999999987 78899999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE---EEEEe
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ---THSLQ 671 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~ 671 (784)
|.++.|+|..++++++|+.||.|++||++.. .|.+++.|..+++. +..-.
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRra---------------------------sgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRA---------------------------SGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecc---------------------------cceeEEeecccCccCccccccc
Confidence 9999999999999999999999999999742 12333444433322 22234
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceE-EEec--cCCC----ceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260 672 GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECI-QELS--SNGN----QFHSCVFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 672 ~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i-~~l~--~~~~----~I~sl~fspdg~~L~s~s~dg~I~Iwd 743 (784)
.|.+.|+.++|..++.++++++ ++.+++|+..+|+.. ..+- .|.. .+. +. +-+...++..-.++.+.+++
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEE
Confidence 5999999999999999999887 559999999887531 2111 1111 111 12 33444455555668899999
Q ss_pred CCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 744 MAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 744 l~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
+-++..+ .+..|-..|.|.++-|+=....++..|+.|..|
T Consensus 322 ~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMW 362 (397)
T ss_pred ccCceEEEeeecccceeeEEeecCchhhhhccccCCccccc
Confidence 9888877 667888889999999998889999999999888
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.3e-21 Score=216.00 Aligned_cols=234 Identities=16% Similarity=0.322 Sum_probs=194.8
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 510 VTCCHFSS-DGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 510 V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
+..+.|.. +.++|||++..|.|.+||+.. .+.+..|..|+..|+++.|++ ...+|++|+.||+|++||++..+ .
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-S 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-c
Confidence 55677775 567999999999999999986 566678899999999999999 56789999999999999999866 5
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF----LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD 660 (784)
..++.+....|..|.|+|...+.|+++.+.|.+.+||++.. ..+..+.+++.|+.|+|+..+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 66677788999999999999999999999999999999852 34556779999999999999999999999999999
Q ss_pred CCCCe--EEEEEeCCCCCEEEEEEcCCCCE-EEEEe--CC-eEEEEeCCCC-ceEEEeccCCCceEEEEEec-CCCEEEE
Q 047260 661 IETDR--QTHSLQGHAELVNYICWDTNGDY-LASVS--QN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHP-SYSTLLV 732 (784)
Q Consensus 661 l~t~~--~i~~l~~h~~~V~sl~~spdg~~-Lasgs--dd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fsp-dg~~L~s 732 (784)
+.+.+ ...++. ...+|.+|.|-|...+ |++++ .+ .|+|||++.. -+..++..|...++.++|.. |...+.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 98654 344443 4568999999997664 66665 34 9999999865 56778899999999999975 4456888
Q ss_pred EECCCeEEEEECC
Q 047260 733 VGGISSLELWNMA 745 (784)
Q Consensus 733 ~s~dg~I~Iwdl~ 745 (784)
++.||+|..-.++
T Consensus 328 ~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 328 CSKDGTVLQHLFK 340 (839)
T ss_pred ecCccHHHHhhhh
Confidence 8888876654433
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=4.5e-20 Score=195.48 Aligned_cols=288 Identities=19% Similarity=0.279 Sum_probs=212.8
Q ss_pred CcceeEEeEeecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECC----CCceeeecCCCCCCeEEEEEcc-CCCEEEE
Q 047260 494 GFTFCEVGCIRSRNSKVTCCHFSSDG--KLLASSGHDRKVVLWNMD----TLQTESTPEDHKSVVTDVRFRP-NSSQLAT 566 (784)
Q Consensus 494 ~~~~~~i~~l~~H~~~V~~l~fspdg--~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~It~i~fsp-dg~~Lat 566 (784)
...+.....++-|.++|+|++|+|.. +++|+|..-|.|-+||+. ....+..+..|..+|.+|.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 44556667778899999999999954 588999999999999995 2334566778999999999999 5678999
Q ss_pred EeCCCeEEEEcCCCCcceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEEEE
Q 047260 567 ASVDKSVRLWDAANPNFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQVRF 640 (784)
Q Consensus 567 gs~Dg~I~IWdl~~~~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v~f 640 (784)
.|+||+|++-|++... ....+. .....+..+.|+.+...++ .++.=|...+||+++.. .+..++..|+.+++
T Consensus 253 sSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999998754 222222 2345567788887776444 55556699999998643 45566679999999
Q ss_pred ecCCCE-EEEEECCCcEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCC----CCceEEE
Q 047260 641 QPRIGQ-LLAAASDKVVSIFDIETDR----QTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMA----SGECIQE 710 (784)
Q Consensus 641 sp~~~~-Ll~~s~Dg~I~IwDl~t~~----~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~----t~~~i~~ 710 (784)
+|...+ |++++.|++++|||++.-. ++.....|...|.++.|+|.+-.|++.+ |+.|+|||.. ...+..+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 998766 5667779999999998642 2334446999999999999766566655 6699999984 3344444
Q ss_pred eccCC---C--ceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCC-ceEE-EEEeCCCCEEEE-EECCCcEE
Q 047260 711 LSSNG---N--QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISA-LAQSPVTGMVAS-ASHDSSVK 781 (784)
Q Consensus 711 l~~~~---~--~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~-~V~s-lafspdg~~LaS-gs~DG~V~ 781 (784)
+.... . ......|.|+..+|+++..-..|-|||-..++.+ .+..... .|.+ ..|+|-+..+++ ++..|.|+
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 43221 1 2345689999999999999899999998888754 3333222 3443 478998884554 45688898
Q ss_pred Ee
Q 047260 782 LW 783 (784)
Q Consensus 782 IW 783 (784)
||
T Consensus 491 vf 492 (498)
T KOG4328|consen 491 VF 492 (498)
T ss_pred EE
Confidence 88
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.8e-20 Score=194.70 Aligned_cols=279 Identities=13% Similarity=0.242 Sum_probs=222.9
Q ss_pred CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260 439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD 518 (784)
Q Consensus 439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd 518 (784)
.-+.++.|.+...-++ ++.+|+++++|-+.... -..+..+.-...+|.+++|.|+
T Consensus 214 ~~I~sv~FHp~~plll-vaG~d~~lrifqvDGk~------------------------N~~lqS~~l~~fPi~~a~f~p~ 268 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLL-VAGLDGTLRIFQVDGKV------------------------NPKLQSIHLEKFPIQKAEFAPN 268 (514)
T ss_pred CCceEEEecCCCceEE-EecCCCcEEEEEecCcc------------------------ChhheeeeeccCccceeeecCC
Confidence 4456677777666666 56699999999773221 1244555667788999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCCceee--ecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260 519 GK-LLASSGHDRKVVLWNMDTLQTES--TPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP 594 (784)
Q Consensus 519 g~-~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~ 594 (784)
|. .+++++.....+.||+.+.+... .+.++. ..+.....++++++|+..+..|.|.+....++. .+..+. -.+.
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~K-ieG~ 346 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFK-IEGV 346 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheee-eccE
Confidence 99 89999999999999998866543 333444 457778899999999999999999999998866 333332 3578
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CC--eeEEEEecCCCEEEEEECCCcEEEEECCC------C
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GG--TAQVRFQPRIGQLLAAASDKVVSIFDIET------D 664 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~--v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t------~ 664 (784)
|..++|+.++..+++ ++.+|.|++||++...|++.+. +. .+.++.++++.+|++|+..|.|.|||..+ .
T Consensus 347 v~~~~fsSdsk~l~~-~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLA-SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred EeeEEEecCCcEEEE-EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 999999999875555 5558899999999999888876 33 46778889999999999999999999654 4
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccC---CCceEEEEEecCCCEEEEEECCCe
Q 047260 665 RQTHSLQGHAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSN---GNQFHSCVFHPSYSTLLVVGGISS 738 (784)
Q Consensus 665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~---~~~I~sl~fspdg~~L~s~s~dg~ 738 (784)
+++..+..-...|+++.|++|..+|+.++ .+.+++..+.+......+... -+.|+|++|+|.+.++++|..+|.
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 67777777778999999999999999988 348999999887766666543 345899999999999999999999
Q ss_pred EEEEECC
Q 047260 739 LELWNMA 745 (784)
Q Consensus 739 I~Iwdl~ 745 (784)
|.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999874
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=5.5e-20 Score=190.61 Aligned_cols=238 Identities=18% Similarity=0.362 Sum_probs=185.4
Q ss_pred ecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCC----------------CceeeecCCCCCCeEEEEEcc-CCCEE
Q 047260 504 RSRNSKVTCCHFSSDG--KLLASSGHDRKVVLWNMDT----------------LQTESTPEDHKSVVTDVRFRP-NSSQL 564 (784)
Q Consensus 504 ~~H~~~V~~l~fspdg--~~Lasgs~Dg~I~IWd~~t----------------~~~~~~l~~h~~~It~i~fsp-dg~~L 564 (784)
-.|.+.|+.+.-++-+ .+.|+=+..|.|.||++.. .+++.++.+|...=..|+|+| ....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4588888888888754 4566667889999999852 467778889999999999999 33358
Q ss_pred EEEeCCCeEEEEcCCCCccee--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEeecCCeeE
Q 047260 565 ATASVDKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-----LCTHITKGGTAQ 637 (784)
Q Consensus 565 atgs~Dg~I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-----~~~~~~~~~v~~ 637 (784)
++|..-+.|++|...++.... ..+.+|+..|..++|+|....+|++|+.||.|+|||++.. .+...+.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888899999998866432 4567899999999999999999999999999999999975 233556688999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEeCCCCce-----
Q 047260 638 VRFQPRIGQLLAAASDKVVSIFDIET---DRQTHSLQGHAELVNYICWDTNG--DYLASVSQNLVKVWSMASGEC----- 707 (784)
Q Consensus 638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg--~~Lasgsdd~I~IwDl~t~~~----- 707 (784)
|.|+.....|++|+.||+++|||++. ++++..|+-|..+|++|.|+|.. .+.++|.|+.|.|||+.-..-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999999899999999999999986 46888999999999999999843 344455566999999864211
Q ss_pred ---EE--------EeccC--CCceEEEEEecCCC-EEEEEECCCeEEEE
Q 047260 708 ---IQ--------ELSSN--GNQFHSCVFHPSYS-TLLVVGGISSLELW 742 (784)
Q Consensus 708 ---i~--------~l~~~--~~~I~sl~fspdg~-~L~s~s~dg~I~Iw 742 (784)
.. -+..| ...+..+.|++.-+ +|++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 00 11112 35577888988654 556666666 4444
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3e-19 Score=181.45 Aligned_cols=238 Identities=19% Similarity=0.278 Sum_probs=181.8
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc----eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260 543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618 (784)
Q Consensus 543 ~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~----~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~ 618 (784)
..+++|.+.|++++|+.||++|+|++.|++|+||++++-.. +++... .-+..+.+.|.||-..+++++-....++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35679999999999999999999999999999999986331 111111 1235788999999999999999999999
Q ss_pred EEeCCCC---------------eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 047260 619 YWSINPF---------------LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWD 683 (784)
Q Consensus 619 iwDl~~~---------------~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s 683 (784)
+|.+... .....+...+..+-....+.+|.+++.|..|.+||++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9977421 1111222345556666777889999999999999999 88888887766777788999
Q ss_pred CCCCEEEEEeCC-eEEEEeCC---CC-----ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc------
Q 047260 684 TNGDYLASVSQN-LVKVWSMA---SG-----ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK------ 748 (784)
Q Consensus 684 pdg~~Lasgsdd-~I~IwDl~---t~-----~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~------ 748 (784)
|+|++|++++-- .|+||.+- .| ..+..+++|...|..++|+++...+++++.||+++|||++-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999998844 89999873 33 3467888999999999999999999999999999999976321
Q ss_pred -eE-----EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 749 -SM-----TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 749 -~~-----~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.+ .+....+....++.+|.+..|+.+.. ..+++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 11 12222334458999999998886532 234443
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=219.10 Aligned_cols=272 Identities=17% Similarity=0.327 Sum_probs=214.4
Q ss_pred EEEEEcCCCC-EEEEE----------eCCCeEEEEECCCC------ceeeecCCCCCCeEEEEEccCCCE----EEEEeC
Q 047260 511 TCCHFSSDGK-LLASS----------GHDRKVVLWNMDTL------QTESTPEDHKSVVTDVRFRPNSSQ----LATASV 569 (784)
Q Consensus 511 ~~l~fspdg~-~Lasg----------s~Dg~I~IWd~~t~------~~~~~l~~h~~~It~i~fspdg~~----Latgs~ 569 (784)
-.++|+|++. ++|+| +.+.++-||.+... +.+..+ ......+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence 3468999887 56654 23556667765422 222222 23456789999996655 899999
Q ss_pred CCeEEEEcCCCC-----cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-----ecCCeeEEE
Q 047260 570 DKSVRLWDAANP-----NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-----TKGGTAQVR 639 (784)
Q Consensus 570 Dg~I~IWdl~~~-----~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-----~~~~v~~v~ 639 (784)
||.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||++..+.-.. ..+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998652 2345667789999999999999999999999999999999986443322 346789999
Q ss_pred EecCCCEEEE-EECCCcEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCC-EEEEEe-CC---eEEEEeCCCC-ceEEE
Q 047260 640 FQPRIGQLLA-AASDKVVSIFDIETDRQTHSLQGHAE--LVNYICWDTNGD-YLASVS-QN---LVKVWSMASG-ECIQE 710 (784)
Q Consensus 640 fsp~~~~Ll~-~s~Dg~I~IwDl~t~~~i~~l~~h~~--~V~sl~~spdg~-~Lasgs-dd---~I~IwDl~t~-~~i~~ 710 (784)
|+..-.++++ ++.+|.+.|||++..+.+..+..+.. .+..+.|+|++. .|++++ |+ .|.+||+|.- ..+++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9887766554 55578999999999988888876554 577899999864 444444 33 8999999864 67888
Q ss_pred eccCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCC-EEEEEECCCcEEEe
Q 047260 711 LSSNGNQFHSCVFHPSY-STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTG-MVASASHDSSVKLW 783 (784)
Q Consensus 711 l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IW 783 (784)
+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+......+..+.|+|... +|+.++-||.|-||
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 89999999999999977 78999999999999999999988 6666778899999999876 88888999999887
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.9e-19 Score=177.36 Aligned_cols=245 Identities=21% Similarity=0.308 Sum_probs=189.9
Q ss_pred CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC--CCCEEEEEeCC
Q 047260 451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS--DGKLLASSGHD 528 (784)
Q Consensus 451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp--dg~~Lasgs~D 528 (784)
...++++|.|++|++|....+. ....+.+|++|.++|+.++|.. -|.+||+++.|
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~-----------------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNG-----------------------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred cceeeeecCCccEEEEEEcCCC-----------------------CceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 3445678899999999875544 1245778999999999999977 89999999999
Q ss_pred CeEEEEECCCCc--eeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcC
Q 047260 529 RKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHP 602 (784)
Q Consensus 529 g~I~IWd~~t~~--~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp 602 (784)
|+|.||.-+.++ .......|...|++|+|.| -|-.|++++.||.|.|.++++.. ...++...|.-.|.+++|.|
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 999999988764 3345568999999999999 46789999999999999987652 24456678999999999998
Q ss_pred CCCc--EEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEE
Q 047260 603 KKTD--LFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVN 678 (784)
Q Consensus 603 ~~~~--ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~ 678 (784)
.... ++-.+. ...-..|++|+.|..|+||+...+ +..+.+.+|.+.|+
T Consensus 160 a~~~g~~~~~~~----------------------------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 160 ASAPGSLVDQGP----------------------------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred cCCCccccccCc----------------------------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 6210 110000 001256899999999999998875 34456889999999
Q ss_pred EEEEcCCC----CEEEEEeCC-eEEEEeCCCC--c-eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 679 YICWDTNG----DYLASVSQN-LVKVWSMASG--E-CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 679 sl~~spdg----~~Lasgsdd-~I~IwDl~t~--~-~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
.++|.|.- .+|++++.| +|.||..+.. . ....+......+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999964 478999966 9999987632 1 1222233457799999999999999999999999997543
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.8e-19 Score=197.31 Aligned_cols=279 Identities=14% Similarity=0.211 Sum_probs=205.0
Q ss_pred cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC
Q 047260 448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH 527 (784)
Q Consensus 448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~ 527 (784)
+..+.+++++-.||.|.+++...-... ..-+.+.....|.+.|..+.|-|....|++++.
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr--------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFR--------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcc--------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence 456677788888888888866322100 111233455679999999999996668999999
Q ss_pred CCeEEEEECCCCceeee--cCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcc------eeee-----------
Q 047260 528 DRKVVLWNMDTLQTEST--PEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNF------CSQA----------- 587 (784)
Q Consensus 528 Dg~I~IWd~~t~~~~~~--l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~------~~~~----------- 587 (784)
|.++++||++..+++.. +.+|...|.+++|.+ +...|++|+.||.|.|||++.... +...
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999888776 889999999999999 566889999999999999874320 0011
Q ss_pred ---------ccCCCCCeEE---EEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEee--------------cCCeeEEEE
Q 047260 588 ---------YTGHSSPIMS---LDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHIT--------------KGGTAQVRF 640 (784)
Q Consensus 588 ---------~~~h~~~V~s---l~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~--------------~~~v~~v~f 640 (784)
...+...|.+ +.+..|+. .|++++. |+.|+|||++...+.... ..++.++..
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 1123333444 44444555 5555555 999999999864332211 135677888
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccC
Q 047260 641 QPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAE--LVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSN 714 (784)
Q Consensus 641 sp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~--~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~ 714 (784)
...|.+|++.|.|+.|+.|++... .++..+.++.. ....-+.+|++.+|++++.+ ..++|.+.+.+ ....+.+|
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh 359 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH 359 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence 888999999999999999999864 34444444332 12233568999999999966 99999998764 45667789
Q ss_pred CCceEEEEEecCC-CEEEEEECCCeEEEEECCCC
Q 047260 715 GNQFHSCVFHPSY-STLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 715 ~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~ 747 (784)
.-.|++++|.|.. .-+++++.|-.++||++..+
T Consensus 360 t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 360 TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999998754 33788899999999999654
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-19 Score=190.51 Aligned_cols=256 Identities=15% Similarity=0.218 Sum_probs=199.3
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260 510 VTCCHFSSDGK-LLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 510 V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
|.+++|+.... .+++.+.|..|++|.-... +....-+.....-.|++......|+++|+..++|+|||++. +.+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhh
Confidence 88999987653 2334456888999975532 12211112222445555555568999999999999999995 56888
Q ss_pred eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC----CeeEEEEecCCCEEE-EEECCCcEEEEEC
Q 047260 587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG----GTAQVRFQPRIGQLL-AAASDKVVSIFDI 661 (784)
Q Consensus 587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~----~v~~v~fsp~~~~Ll-~~s~Dg~I~IwDl 661 (784)
.+.+|.+.|+++.++..+. +|++++..|.|.|..+.+......+.. .+.-+.|++..++++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 8999999999999997765 788999999999999988766555542 345788999887765 4566899999999
Q ss_pred CCCeEEEEE-eCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260 662 ETDRQTHSL-QGHAELVNYICWDTNGD-YLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS 738 (784)
Q Consensus 662 ~t~~~i~~l-~~h~~~V~sl~~spdg~-~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~ 738 (784)
....++..+ +.|..+...|||+|... +|++.+ |..|.+||++..+....+. ...+...++|.++|.+|++|...|.
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCce
Confidence 988777665 45999999999999665 556655 5599999999877666664 3467899999999999999999999
Q ss_pred EEEEECCCCceE--EecccCCceEEEEEeCCC
Q 047260 739 LELWNMAENKSM--TIAAHENIISALAQSPVT 768 (784)
Q Consensus 739 I~Iwdl~~~~~~--~~~~h~~~V~slafspdg 768 (784)
|..||++..+.. .+..|...|++|+|-+..
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999876543 677999999999998864
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=181.36 Aligned_cols=274 Identities=15% Similarity=0.256 Sum_probs=205.5
Q ss_pred ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260 443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL 522 (784)
Q Consensus 443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L 522 (784)
...|+.. ..++++|..||.|.+|+...- ..-+.+.+|..+|+|++||+||+.|
T Consensus 28 ~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~--------------------------~iar~lsaH~~pi~sl~WS~dgr~L 80 (405)
T KOG1273|consen 28 CCQFSRW-GDYLAVGCANGRVVIYDFDTF--------------------------RIARMLSAHVRPITSLCWSRDGRKL 80 (405)
T ss_pred eEEeccC-cceeeeeccCCcEEEEEcccc--------------------------chhhhhhccccceeEEEecCCCCEe
Confidence 3445443 445668999999999977322 2334567899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeecc--C-CCCCeEEE
Q 047260 523 ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYT--G-HSSPIMSL 598 (784)
Q Consensus 523 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~--~-h~~~V~sl 598 (784)
+|++.|..|.+||+..+.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+........ + ......+.
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc
Confidence 999999999999999999988884 77899999999943 3344443444455555554331111111 1 11122334
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCC-------e--
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-------R-- 665 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-------~-- 665 (784)
.|.+.|+ ++++|...|.+.++|..+.+++..++ ..+..+.++..+..|+.-+.|..|+.|+++.- +
T Consensus 160 ~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e 238 (405)
T KOG1273|consen 160 VFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE 238 (405)
T ss_pred cccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence 5777776 77889999999999999999987776 45677889999999999999999999998631 1
Q ss_pred EEEEEeC--CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCeEE
Q 047260 666 QTHSLQG--HAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLE 740 (784)
Q Consensus 666 ~i~~l~~--h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~ 740 (784)
+.+.+.. ....-.+++|+.+|.|+++++.. .++||.-..|.+++.+.+.. .....+.|+|-...|++. ..|.|+
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~ 317 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVY 317 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceE
Confidence 1122211 23455789999999999999855 89999999999999998876 567889999998877777 778999
Q ss_pred EEECCC
Q 047260 741 LWNMAE 746 (784)
Q Consensus 741 Iwdl~~ 746 (784)
||....
T Consensus 318 iw~~~~ 323 (405)
T KOG1273|consen 318 IWAVVQ 323 (405)
T ss_pred EEEeec
Confidence 998654
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6e-17 Score=176.89 Aligned_cols=283 Identities=26% Similarity=0.467 Sum_probs=227.1
Q ss_pred eeEEeEeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGH-DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVR 574 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~ 574 (784)
......+..|...|.+++|+|++.++++++. |+.+++|++.....+..+..|...|.+++|+|++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 3566778889999999999999998888885 99999999999889999999999999999999988 555559999999
Q ss_pred EEcCCCCcceee-eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-EEee---cCCeeEEEEecCCCEEEE
Q 047260 575 LWDAANPNFCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-THIT---KGGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 575 IWdl~~~~~~~~-~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~-~~~~---~~~v~~v~fsp~~~~Ll~ 649 (784)
+||...+. ... .+.+|...+ ...|++++ .++++++.|+.+++|++..... .... ...+.++.|.|++..+++
T Consensus 225 ~wd~~~~~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 225 LWDLSTGK-LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEECCCCc-EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 99888555 444 677887775 44899998 4677899999999999986543 3333 577888999998888888
Q ss_pred EECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260 650 AASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASV-S-QNLVKVWSMASGECIQELSSNGNQFHSCVFHP 725 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasg-s-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp 725 (784)
++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . ++.+.+|++............ ..+..+.+.+
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 380 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP 380 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC
Confidence 8889889999999887776665 788889999994332555555 3 448888999887733333332 2278888888
Q ss_pred CCCEEEE-EECCCeEEEEECCCCceEEecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 726 SYSTLLV-VGGISSLELWNMAENKSMTIAAHE-NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 726 dg~~L~s-~s~dg~I~Iwdl~~~~~~~~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
...++. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+
T Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 381 -DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred -CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 533444 577899999999998887555544 8899999999999999999999999996
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.9e-19 Score=188.93 Aligned_cols=232 Identities=20% Similarity=0.382 Sum_probs=182.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCC---cee------------------eecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEE
Q 047260 518 DGKLLASSGHDRKVVLWNMDTL---QTE------------------STPEDHKSVVTDVRFRPN-SSQLATASVDKSVRL 575 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~---~~~------------------~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~I 575 (784)
.|+|+|.|+.|..|.|||+.-. .+. ..-.+|+..|.+++|+.. .+.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3679999999999999998621 010 112369999999999884 568999999999999
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeecCCeeEEEEecCCCE-EEEEE
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---FLCTHITKGGTAQVRFQPRIGQ-LLAAA 651 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~~~v~~v~fsp~~~~-Ll~~s 651 (784)
||+.+++ +..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ......+.+.|..++|.|.... +++++
T Consensus 271 WD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 9999987 77888889999999999999999999999999999999993 4445667799999999998765 55556
Q ss_pred CCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCce--EEEeccCCCceEEEEEecC
Q 047260 652 SDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGEC--IQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 652 ~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspd 726 (784)
.||+|+-+|+|.. +++.+++.|.+.|.+|++++.- .++++++.+ .|++|++..... +..-.-.-+...|.++.|+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 6899999999986 9999999999999999998754 456666644 999999875432 2222222234677788888
Q ss_pred CCEE-EEEECCCeEEEEECCCCceE
Q 047260 727 YSTL-LVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 727 g~~L-~s~s~dg~I~Iwdl~~~~~~ 750 (784)
-.++ ++|+..+.++|||+.+...+
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEecCccceEEEeecccChhH
Confidence 7664 45555567999999877544
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=3.1e-19 Score=189.16 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=219.3
Q ss_pred CcccccccccCCC-ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260 439 SLASASNLLEDID-RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS 517 (784)
Q Consensus 439 ~~~ss~~~~~~~~-~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp 517 (784)
..+.+..|.+... .++++|...|.|.+|+.... ......+..+..|..+|.++.|+|
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~----------------------~~d~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ----------------------EKDKDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCC----------------------CCccCceEEeccCCccccceEecC
Confidence 3456677777766 88999999999999988311 011123456778999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260 518 -DGKLLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP 594 (784)
Q Consensus 518 -dg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~ 594 (784)
+...+++.+.||+|++-|+++......+ ......+..+.|+.+...++++..=|...+||+++++.....+.-|...
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 4558889999999999999875443333 3355667888898888888888877899999999988667777788899
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-------EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECC----C
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-------THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE----T 663 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~-------~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~----t 663 (784)
|.+|+++|-.++++++++.|++++|||++.... ...+...|.+..|+|.+..|++.+.|..|+|||.. .
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 999999999999999999999999999985322 22345778999999999999999999999999983 3
Q ss_pred CeEEEEEeCCCC------CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCC-ceEEE-EEecCCCEEEEEE
Q 047260 664 DRQTHSLQGHAE------LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGN-QFHSC-VFHPSYSTLLVVG 734 (784)
Q Consensus 664 ~~~i~~l~~h~~------~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~-~I~sl-~fspdg~~L~s~s 734 (784)
..+...+. |.. ......|.|+..+|+++.-- .|-|+|-..++.+.++..... .|.++ .|+|-+..+++|+
T Consensus 405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccC
Confidence 33444443 322 23446899999999998854 899999999998888765443 45444 7999988666666
Q ss_pred C-CCeEEEEECC
Q 047260 735 G-ISSLELWNMA 745 (784)
Q Consensus 735 ~-dg~I~Iwdl~ 745 (784)
. .|.|+||.-+
T Consensus 484 ~s~Gki~vft~k 495 (498)
T KOG4328|consen 484 NSSGKIYVFTNK 495 (498)
T ss_pred CccceEEEEecC
Confidence 5 4789988654
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.6e-20 Score=213.36 Aligned_cols=243 Identities=18% Similarity=0.312 Sum_probs=200.4
Q ss_pred CCCceEEEEEcCCCCE----EEEEeCCCeEEEEECCC------CceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEE
Q 047260 506 RNSKVTCCHFSSDGKL----LASSGHDRKVVLWNMDT------LQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVR 574 (784)
Q Consensus 506 H~~~V~~l~fspdg~~----Lasgs~Dg~I~IWd~~t------~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~ 574 (784)
...+.++++|.+.|.. ||.|.+||.|.+||... ...+.++..|++.|..+.|++.. ++||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3456788999987665 89999999999999875 23456677899999999999955 5999999999999
Q ss_pred EEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCE-E
Q 047260 575 LWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQ-L 647 (784)
Q Consensus 575 IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~-L 647 (784)
|||+.+.+..... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+. ..+..+.|+|+... +
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999875533222 123567899999999988999999999999999999876555444 33568999998754 5
Q ss_pred EEEECC---CcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEE
Q 047260 648 LAAASD---KVVSIFDIETD-RQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC 721 (784)
Q Consensus 648 l~~s~D---g~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl 721 (784)
++++.| -.|.+||+|.- .+++.+.+|...|.++.|++.+ ++|++++.| .|.+|+.++++.+.++....+.+..+
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv 302 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV 302 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee
Confidence 556554 47999999875 6777888999999999999966 777777755 99999999999999999999999999
Q ss_pred EEecCCC-EEEEEECCCeEEEEECCCCc
Q 047260 722 VFHPSYS-TLLVVGGISSLELWNMAENK 748 (784)
Q Consensus 722 ~fspdg~-~L~s~s~dg~I~Iwdl~~~~ 748 (784)
.|+|... .+++++-||.|.||.+.+..
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecCC
Confidence 9999887 67778889999999987765
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=2.8e-18 Score=189.48 Aligned_cols=323 Identities=16% Similarity=0.215 Sum_probs=244.6
Q ss_pred ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260 441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK 520 (784)
Q Consensus 441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~ 520 (784)
+.+..-.+....+| +.|.|.++.+|...+.. -.++.. -.+....+.......+.|+|+++
T Consensus 270 V~sv~W~p~~~~LL-SASaDksmiiW~pd~~t--GiWv~~-----------------vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 270 VYSVWWHPEGLDLL-SASADKSMIIWKPDENT--GIWVDV-----------------VRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred eEEEEEccchhhhe-ecccCcceEEEecCCcc--ceEEEE-----------------EEeecccccccceeeEEEcCCCC
Confidence 33444445555565 57899999999553321 112111 12233335667799999999999
Q ss_pred EEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce---eeeccCCCCC
Q 047260 521 LLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC---SQAYTGHSSP 594 (784)
Q Consensus 521 ~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~---~~~~~~h~~~ 594 (784)
.+++-+..|-.++|..+. ......+.+|.+.|++|+|+|.|.+|++++.|-+-|||---..+.. +..-.-|...
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 999999999999998332 2344556799999999999999999999999999999875522211 1122347778
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------------------------------------------CCee----
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSIN-------------------------------------------PFLC---- 627 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-------------------------------------------~~~~---- 627 (784)
++|++|-+. +..|++|.+...+|+|+.. ++..
T Consensus 410 l~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 410 LTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred ceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 999999875 5688899999999999752 0000
Q ss_pred --------------------------------EEeecCCeeEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEE
Q 047260 628 --------------------------------THITKGGTAQVRFQPRIGQLLAAASD-----KVVSIFDIETDRQTHSL 670 (784)
Q Consensus 628 --------------------------------~~~~~~~v~~v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~l 670 (784)
+.-|.-.+.+++.+|+++.+++++.. ..|++|+..+...+..+
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L 568 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL 568 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence 00011257889999999999999863 56999999998888899
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc----eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE----CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~----~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
.+|.-.|+.++|+|||+||++.+.| ++.+|...... .....+.|..-|.+|.|+|++.++++++.|.+|++|...
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 9999999999999999999999976 99999875432 123367899999999999999999999999999999988
Q ss_pred CC--ceE---EecccCCceEEEEEeCC-----CCEEEEEECCCcEEEeC
Q 047260 746 EN--KSM---TIAAHENIISALAQSPV-----TGMVASASHDSSVKLWK 784 (784)
Q Consensus 746 ~~--~~~---~~~~h~~~V~slafspd-----g~~LaSgs~DG~V~IWd 784 (784)
.. +.+ ....+...|++++|.|- +..++.|-..|.|.||+
T Consensus 649 ~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 649 DLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred CchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 87 433 44578899999999873 23678888899999995
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.1e-18 Score=175.70 Aligned_cols=204 Identities=21% Similarity=0.387 Sum_probs=168.7
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcc-----------e---eeeccCCCCCeEEEEEcCCCCcEEEE
Q 047260 546 EDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNF-----------C---SQAYTGHSSPIMSLDFHPKKTDLFCF 610 (784)
Q Consensus 546 ~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~-----------~---~~~~~~h~~~V~sl~~sp~~~~ll~s 610 (784)
..|.+.|+++...+ .|+++++|+.||.|.|||+++... + ...-.+|.-.|.++.|.|-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999988 789999999999999999976330 1 11124688899999999988889999
Q ss_pred EeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260 611 CDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRI---GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN 685 (784)
Q Consensus 611 gs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~---~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd 685 (784)
++.|.++++||.++......++ +.|.+-+++|-. ..+++|..|-.|++.|+..|..-+.+.+|...|.+|.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999987766554 777877887753 34566666899999999999999999999999999999998
Q ss_pred CCEE-EEEe-CCeEEEEeCCCC-ceEEEec--------------cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260 686 GDYL-ASVS-QNLVKVWSMASG-ECIQELS--------------SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748 (784)
Q Consensus 686 g~~L-asgs-dd~I~IwDl~t~-~~i~~l~--------------~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~ 748 (784)
.+++ ++|+ |+.|++||++.. -|...+. .|.+.|+.++|..++.++++++.|..+++|+...++
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8865 5566 559999999864 3444443 455778999999999999999999999999998765
Q ss_pred e
Q 047260 749 S 749 (784)
Q Consensus 749 ~ 749 (784)
.
T Consensus 280 n 280 (397)
T KOG4283|consen 280 N 280 (397)
T ss_pred c
Confidence 3
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=177.48 Aligned_cols=265 Identities=20% Similarity=0.345 Sum_probs=204.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c--------eeeecC-CCCCCeEEEEEc-------cCCCEEEEEeC
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTL----Q--------TESTPE-DHKSVVTDVRFR-------PNSSQLATASV 569 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~--------~~~~l~-~h~~~It~i~fs-------pdg~~Latgs~ 569 (784)
...+.|+|||..|++-+.|..+.+|++... + ....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999998521 0 011111 234568888886 56778999999
Q ss_pred CCeEEEEcCCCCcceeeecc--CCCC---CeEEEEEcCCCCcEEEEEeCCCeEEEEeC-CCCeeE----------EeecC
Q 047260 570 DKSVRLWDAANPNFCSQAYT--GHSS---PIMSLDFHPKKTDLFCFCDNDNEIQYWSI-NPFLCT----------HITKG 633 (784)
Q Consensus 570 Dg~I~IWdl~~~~~~~~~~~--~h~~---~V~sl~~sp~~~~ll~sgs~dg~I~iwDl-~~~~~~----------~~~~~ 633 (784)
|.-|++||.-+++ ....+. .|.. ...+++|+|||..++ ++....|++||+ ++++.. ....+
T Consensus 132 ~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999877 333333 2333 346899999999665 456889999999 443221 11235
Q ss_pred CeeEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCC-ceEE
Q 047260 634 GTAQVRFQPRIG-QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASG-ECIQ 709 (784)
Q Consensus 634 ~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~-~~i~ 709 (784)
-+.+++|+|... .+++++....+-||.-....++..+-+|.+.|+.++|.++|+.|++|+ ++.|.+||++.. .++.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 678899999776 677777788999999888999999999999999999999999999998 449999999864 5666
Q ss_pred EeccCCC-ceEEEE--EecCCCEEEEEECCCeEEEEECCC-Cc-eEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260 710 ELSSNGN-QFHSCV--FHPSYSTLLVVGGISSLELWNMAE-NK-SMTIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 710 ~l~~~~~-~I~sl~--fspdg~~L~s~s~dg~I~Iwdl~~-~~-~~~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
.+..|.. .-..|. ..|++++|++|+.||.|++||+++ +. ...+..|...|+.++++|-=.++++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 7766644 223444 468899999999999999999998 55 34667899999999999987788887643
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=9.7e-19 Score=178.73 Aligned_cols=278 Identities=18% Similarity=0.344 Sum_probs=214.3
Q ss_pred eecCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc---eeeec--CCCCCCeEEEEEccC----CCEEEEEe
Q 047260 503 IRSRNSKVTCCHFSS-----DGKLLASSGHDRKVVLWNMDTLQ---TESTP--EDHKSVVTDVRFRPN----SSQLATAS 568 (784)
Q Consensus 503 l~~H~~~V~~l~fsp-----dg~~Lasgs~Dg~I~IWd~~t~~---~~~~l--~~h~~~It~i~fspd----g~~Latgs 568 (784)
...|+.+|..++|++ +...+|+++. ..|.||.....- .+..+ ..|.+....++|+-+ ..++|.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 346889999999985 2235666664 468888876322 22222 247788888999863 45789999
Q ss_pred CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec------CCeeEEEEec
Q 047260 569 VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK------GGTAQVRFQP 642 (784)
Q Consensus 569 ~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~------~~v~~v~fsp 642 (784)
.-|.|+|.|+.+.. +...+.+|...|..|.++|+...++++++.|..|++|++++..|+..+. ..|.++.|+.
T Consensus 113 ~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 99999999999866 7788899999999999999999999999999999999999999998765 5789999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEE----------------------------EEeCCCCCEEEEEEcCCCCEEEEEe-
Q 047260 643 RIGQLLAAASDKVVSIFDIETDRQTH----------------------------SLQGHAELVNYICWDTNGDYLASVS- 693 (784)
Q Consensus 643 ~~~~Ll~~s~Dg~I~IwDl~t~~~i~----------------------------~l~~h~~~V~sl~~spdg~~Lasgs- 693 (784)
++.+|++++.|..|++|++...+... +-.-|...|-|+.|- |+++++-+
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99999999999999999997322100 011255556666664 56777755
Q ss_pred CCeEEEEeCC-CC-------------ceEEEeccCCCceEEEE--EecCCCEEEEEECCCeEEEEECCCCceE---Eec-
Q 047260 694 QNLVKVWSMA-SG-------------ECIQELSSNGNQFHSCV--FHPSYSTLLVVGGISSLELWNMAENKSM---TIA- 753 (784)
Q Consensus 694 dd~I~IwDl~-t~-------------~~i~~l~~~~~~I~sl~--fspdg~~L~s~s~dg~I~Iwdl~~~~~~---~~~- 753 (784)
++.|..|... -+ ..+.++.-....|+-+. |.|-.+.|+.|...|+|++||++..+.. ++.
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 6699999872 11 12344444555555554 5677788999999999999999987663 222
Q ss_pred -ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 754 -AHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 754 -~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.....|...+|+.|+.+|+..++|+.|.-||
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3356799999999999999999999999986
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.5e-18 Score=181.69 Aligned_cols=304 Identities=18% Similarity=0.257 Sum_probs=212.0
Q ss_pred cccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCE
Q 047260 442 SASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKL 521 (784)
Q Consensus 442 ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~ 521 (784)
....|..+...++++|..|..+++|....+..+.. .....-+..|..|...|++|.|+|+|++
T Consensus 17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-----------------~~~V~y~s~Ls~H~~aVN~vRf~p~gel 79 (434)
T KOG1009|consen 17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-----------------DMKVEYLSSLSRHTRAVNVVRFSPDGEL 79 (434)
T ss_pred EEEEeccCcccceecccCccceeeeeeeecCCCCC-----------------ceeEEEeecccCCcceeEEEEEcCCcCe
Confidence 33444455554777888999999998865542211 1345567788899999999999999999
Q ss_pred EEEEeCCCeEEEEECC--------C--------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 522 LASSGHDRKVVLWNMD--------T--------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 522 Lasgs~Dg~I~IWd~~--------t--------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
||+|+++|.|.+|... + ....+.+.+|...|..++|+|++.++++++-|..+++||+..+. ..
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~ 158 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LL 158 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eE
Confidence 9999999999999765 2 34456677899999999999999999999999999999999977 77
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe-eEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT-AQVRFQPRIGQLLAAASDKVVSIFDIETD 664 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v-~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~ 664 (784)
..+.+|...|..++|.|-+. ++++-+.|...+.+++.....+..+...+ ..-.+.+. .....++|--++.
T Consensus 159 ~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTl 229 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETL 229 (434)
T ss_pred eeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC--------CcceeeeeecCch
Confidence 88899999999999999877 55555666666666655433332222100 00001111 1122223222221
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CC-----eEEEEeCCC-CceEEEeccCCCceEEEEEec--------
Q 047260 665 RQTHSLQGHAELVNYICWDTNGDYLASVS-----QN-----LVKVWSMAS-GECIQELSSNGNQFHSCVFHP-------- 725 (784)
Q Consensus 665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgs-----dd-----~I~IwDl~t-~~~i~~l~~~~~~I~sl~fsp-------- 725 (784)
..-...++|+|+|.+|++.+ .+ ..++|+-.. .+++..+......+..+.|+|
T Consensus 230 ---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 230 ---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred ---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence 12345678889998888754 11 345555433 244555555555555555443
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCceEE--ecccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260 726 ---------SYSTLLVVGGISSLELWNMAENKSMT--IAAHENIISALAQSPVTGMVASASHDSSVK 781 (784)
Q Consensus 726 ---------dg~~L~s~s~dg~I~Iwdl~~~~~~~--~~~h~~~V~slafspdg~~LaSgs~DG~V~ 781 (784)
-.+.+++....+.|+|||..+...+. -.-|-..|+.++|++||.+|+..+.||...
T Consensus 301 ~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 12345666666789999999987773 346889999999999999999999999754
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1e-18 Score=191.07 Aligned_cols=268 Identities=16% Similarity=0.279 Sum_probs=209.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY 588 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~ 588 (784)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+.+++|+.|+.|.||.-.-... ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 799999999999888765 45699999999999999999999999999999999999999999999998764331 22
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260 589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT 667 (784)
Q Consensus 589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i 667 (784)
..|.+.|.|+.|+|-.. .+++|+ -...-+|........ ......+.+++|..||.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 46899999999999865 566665 344567776643322 223366788999999999999999999999865433333
Q ss_pred EEEe---CCCCCEEEEEEcCCC-----CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260 668 HSLQ---GHAELVNYICWDTNG-----DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS 738 (784)
Q Consensus 668 ~~l~---~h~~~V~sl~~spdg-----~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~ 738 (784)
.+. +.+.+|.+++|+|.. ..+++..-+ ++.+|.+. |+.+..-..-+-...|+.+.++|.+++.|+.|+.
T Consensus 168 -~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 168 -KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred -EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 333 467899999999963 345555544 66666553 4444433333445678999999999999999999
Q ss_pred EEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 739 LELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 739 I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+++|..+.-..-++...+..|+.+...|++.+++.|+.||+|..|+
T Consensus 246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999755444446667788999999999999999999999997664
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5.5e-19 Score=192.03 Aligned_cols=241 Identities=18% Similarity=0.251 Sum_probs=200.4
Q ss_pred eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 047260 541 TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW 620 (784)
Q Consensus 541 ~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw 620 (784)
+...+.+|++.|.+|...|.|.+|++|+.||+|+||.+.++. |++.+. ..+.|.||+|+|....-+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-EEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 344567999999999999999999999999999999999988 555443 346899999999876544444444444444
Q ss_pred eCC---------------------------------------CC-eeEEeecCCeeEEEEecCCCEEEEEECC---CcEE
Q 047260 621 SIN---------------------------------------PF-LCTHITKGGTAQVRFQPRIGQLLAAASD---KVVS 657 (784)
Q Consensus 621 Dl~---------------------------------------~~-~~~~~~~~~v~~v~fsp~~~~Ll~~s~D---g~I~ 657 (784)
+.. .+ .....+...+..+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 321 01 1222334677889999999999988764 6799
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260 658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737 (784)
Q Consensus 658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg 737 (784)
|+++...+...-|....+.|.++.|+|...+|++++...|+|||+...+.++++......|..++++|.|..|++++.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 99998877666676678899999999999999999999999999999998888888889999999999999999999999
Q ss_pred eEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 738 SLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 738 ~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.+..||+.-.... ++..|...|++|+|++.-.++++|+.||.|.||
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999876443 788999999999999999999999999999886
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1.9e-18 Score=187.99 Aligned_cols=134 Identities=24% Similarity=0.472 Sum_probs=107.9
Q ss_pred ECCCcEEEEECCCC-eEEE-EEe--CCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCC-------ceEEEeccCCCc
Q 047260 651 ASDKVVSIFDIETD-RQTH-SLQ--GHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASG-------ECIQELSSNGNQ 717 (784)
Q Consensus 651 s~Dg~I~IwDl~t~-~~i~-~l~--~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~-------~~i~~l~~~~~~ 717 (784)
+..|.|-||+++.. ++.- .+. -....|+.+.|+| |...|++++|+ .|+||.+..+ .+...+..|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 34577778887653 2111 111 1456799999999 66677777766 9999998754 355678889999
Q ss_pred eEEEEEecCC-CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 718 FHSCVFHPSY-STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 718 I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+++.|+|-. ..|++++.|-+|++||+.+.+.. .+.+|.+.|..++|+|||+.+++.|.||+|+||+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999954 46888999999999999998776 8899999999999999999999999999999985
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=9.6e-17 Score=175.31 Aligned_cols=281 Identities=27% Similarity=0.514 Sum_probs=224.1
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeecCCCC-CCeEEEEE-ccCCC-EEEEEeC-CCeEEEE
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-TESTPEDHK-SVVTDVRF-RPNSS-QLATASV-DKSVRLW 576 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~-~~It~i~f-spdg~-~Latgs~-Dg~I~IW 576 (784)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... .+..+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456799999999999999999999999999999999876 666666644 37777777 77777 5555455 9999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEE-E
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAA-A 651 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~-s 651 (784)
|+.........+..|...|.+++|+|++. .+++++. ++.+++|++.....+..+ ...+.++.|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99873346777889999999999999998 5556664 999999999875554444 4688999999998844444 7
Q ss_pred CCCcEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EEEeccCCCceEEEEEecCCC
Q 047260 652 SDKVVSIFDIETDRQTH-SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQELSSNGNQFHSCVFHPSYS 728 (784)
Q Consensus 652 ~Dg~I~IwDl~t~~~i~-~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~~l~~~~~~I~sl~fspdg~ 728 (784)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++||+..... +..+..|...+.++.|.|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 89999999999888877 688888875 44899999888877755 999999987664 555567788999999999888
Q ss_pred EEEEEECCCeEEEEECCCCceE-Ee--cccCCceEEEEEeCCCCEEEEE-ECCCcEEEeC
Q 047260 729 TLLVVGGISSLELWNMAENKSM-TI--AAHENIISALAQSPVTGMVASA-SHDSSVKLWK 784 (784)
Q Consensus 729 ~L~s~s~dg~I~Iwdl~~~~~~-~~--~~h~~~V~slafspdg~~LaSg-s~DG~V~IWd 784 (784)
.+++++.|+.+.+||....... .. ..|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 8888888988999999888766 33 3688889999994332455555 6788898885
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-17 Score=183.30 Aligned_cols=275 Identities=16% Similarity=0.195 Sum_probs=216.9
Q ss_pred ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC-CCceEEEEEcCCC
Q 047260 441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR-NSKVTCCHFSSDG 519 (784)
Q Consensus 441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H-~~~V~~l~fspdg 519 (784)
+.+..+...... ++++..|+++++|+... .+.....+.++ ++.|.+++|++ +
T Consensus 28 I~slA~s~kS~~-lAvsRt~g~IEiwN~~~-------------------------~w~~~~vi~g~~drsIE~L~W~e-~ 80 (691)
T KOG2048|consen 28 IVSLAYSHKSNQ-LAVSRTDGNIEIWNLSN-------------------------NWFLEPVIHGPEDRSIESLAWAE-G 80 (691)
T ss_pred eEEEEEeccCCc-eeeeccCCcEEEEccCC-------------------------CceeeEEEecCCCCceeeEEEcc-C
Confidence 334444444444 66899999999997733 22334445554 56799999994 5
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee-eeccCCCCCeEEE
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS-QAYTGHSSPIMSL 598 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~-~~~~~h~~~V~sl 598 (784)
..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+..++.||+||.+..++...+.... ..+...++.|.++
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 568888999999999999999999999999999999999999999999999988888887765332 3344556899999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----------CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----------GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT 667 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----------~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i 667 (784)
+|+|++. .+++|+.||.|++||......++.+. .-+.++.|- ....|++|.+.|+|.+||...+..+
T Consensus 161 sw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 161 SWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EecCCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchh
Confidence 9999986 57889999999999999877666332 123445555 4477899999999999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCce----EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260 668 HSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGEC----IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 668 ~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~----i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
..+..|...|.+++..+++.++++++ |+.|..|...+.+. ......|...|.+++..++ .+++|+.|..+.+-
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 99999999999999999988888777 55777777665532 2233468889999999888 89999999988887
Q ss_pred ECCC
Q 047260 743 NMAE 746 (784)
Q Consensus 743 dl~~ 746 (784)
....
T Consensus 317 ~s~~ 320 (691)
T KOG2048|consen 317 SSRE 320 (691)
T ss_pred cccc
Confidence 6554
No 160
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=176.29 Aligned_cols=281 Identities=15% Similarity=0.254 Sum_probs=214.3
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT------LQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSV 573 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t------~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I 573 (784)
+.+.+|.+.|++|.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 44678999999999999999999999999999999863 34444443 456899999999999999999999999
Q ss_pred EEEcCCCCcceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------eEEeecCCeeEEEEecCCC
Q 047260 574 RLWDAANPNFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CTHITKGGTAQVRFQPRIG 645 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------~~~~~~~~v~~v~fsp~~~ 645 (784)
.+.|+++.. .+..+. ...+.|+.+..+|.. ++|++.+.++.|.+||++... |..........+.|+|...
T Consensus 130 I~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQ-SIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccce-eeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999866 333332 234589999999995 488888999999999998532 2233335667888999876
Q ss_pred EEE-EEECCCcEEEEECCCCe-EEEEE------eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EEEeccC-
Q 047260 646 QLL-AAASDKVVSIFDIETDR-QTHSL------QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQELSSN- 714 (784)
Q Consensus 646 ~Ll-~~s~Dg~I~IwDl~t~~-~i~~l------~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~~l~~~- 714 (784)
.|+ +....+-+-+||.+... .+... .........+.|+|+|..|.+.-.+ .-.+||+-+..| +..+...
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 654 55567899999998653 22221 1122334678899999998887766 677889887544 4444321
Q ss_pred -----CCceEEEEEecCCCEEEEEECCCeEEEEECCC------------------------CceEEecccCCceEEEEEe
Q 047260 715 -----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAE------------------------NKSMTIAAHENIISALAQS 765 (784)
Q Consensus 715 -----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~------------------------~~~~~~~~h~~~V~slafs 765 (784)
...+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|.+.++.+.|+
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 23467788887765 88888888999998742 1123577999999999999
Q ss_pred CCCCEEEEEECCCcEEEeC
Q 047260 766 PVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 766 pdg~~LaSgs~DG~V~IWd 784 (784)
|...+|++.+-+..++||-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CCcceEeccchhhheeccc
Confidence 9999999999999999993
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=2.8e-18 Score=178.07 Aligned_cols=237 Identities=19% Similarity=0.317 Sum_probs=185.0
Q ss_pred CCCCCCeEEEEEccCC--CEEEEEeCCCeEEEEcCCCC---------------cceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260 546 EDHKSVVTDVRFRPNS--SQLATASVDKSVRLWDAANP---------------NFCSQAYTGHSSPIMSLDFHPKKTDLF 608 (784)
Q Consensus 546 ~~h~~~It~i~fspdg--~~Latgs~Dg~I~IWdl~~~---------------~~~~~~~~~h~~~V~sl~~sp~~~~ll 608 (784)
..|.+.|+.+.-.+-+ .+.++=+..|.|.|||+... ...+.++.+|...-+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3688888888877744 45566677899999998531 124566789999999999999766678
Q ss_pred EEEeCCCeEEEEeCCCCe------eEEeecCCeeEEEEecCCCE-EEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEE
Q 047260 609 CFCDNDNEIQYWSINPFL------CTHITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIETD--RQTHSLQGHAELVNY 679 (784)
Q Consensus 609 ~sgs~dg~I~iwDl~~~~------~~~~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~s 679 (784)
++|+.-+.|++|...++. ....+...|..++|+|.... |++|+.||+|+|||++.+ +.....+.|.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 889888999999887532 23346677888999997654 566677999999999987 233334789999999
Q ss_pred EEEcCCCCEEEEEeCC-eEEEEeCCC---CceEEEeccCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCce-----
Q 047260 680 ICWDTNGDYLASVSQN-LVKVWSMAS---GECIQELSSNGNQFHSCVFHPSY-STLLVVGGISSLELWNMAENKS----- 749 (784)
Q Consensus 680 l~~spdg~~Lasgsdd-~I~IwDl~t---~~~i~~l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~----- 749 (784)
|.|+.+-.+|++|+|+ +++|||++. +.++.+|+-|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 9999988899999977 999999986 57899999999999999999965 4578888899999999864321
Q ss_pred ------------EEeccc--CCceEEEEEeCCC-CEEEEEECCCcEEEe
Q 047260 750 ------------MTIAAH--ENIISALAQSPVT-GMVASASHDSSVKLW 783 (784)
Q Consensus 750 ------------~~~~~h--~~~V~slafspdg-~~LaSgs~DG~V~IW 783 (784)
.-++.| ...|..|.|++.- .+|++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 023344 3468889999863 4899999998 4454
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.9e-18 Score=176.25 Aligned_cols=264 Identities=19% Similarity=0.307 Sum_probs=193.4
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCccee-eeccCCC-CCe
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFCS-QAYTGHS-SPI 595 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~~-~~~~~h~-~~V 595 (784)
..+|++...|.|++||..++..+..++++...+..++|.. ....+.+|+.||+|++||++...... ..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788999999999999999999999999999999999987 46789999999999999999855433 3344454 466
Q ss_pred EEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCee-----EEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCe
Q 047260 596 MSLDFHPKKTDLFCFCD----NDNEIQYWSINPFLC-----THITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDR 665 (784)
Q Consensus 596 ~sl~~sp~~~~ll~sgs----~dg~I~iwDl~~~~~-----~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~ 665 (784)
.|++.+-.+. ++++|. .+-.|.+||++.... ...|...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6776654444 777664 367899999997655 34466889999999976 457778889999999997652
Q ss_pred ---EEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEeCCCCceEEEeccCC------------CceEEEEEecCCC
Q 047260 666 ---QTHSLQGHAELVNYICWDTNG--DYLASVSQNLVKVWSMASGECIQELSSNG------------NQFHSCVFHPSYS 728 (784)
Q Consensus 666 ---~i~~l~~h~~~V~sl~~spdg--~~Lasgsdd~I~IwDl~t~~~i~~l~~~~------------~~I~sl~fspdg~ 728 (784)
.+...-.|...|.++.|..++ ++.+.....+..+|+++.+.+...+.... ..+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 222223477889999999888 54444446699999999887655543321 1222223333445
Q ss_pred EEEEEEC-CCeEEEEECC---CCceE----Eec-ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 729 TLLVVGG-ISSLELWNMA---ENKSM----TIA-AHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 729 ~L~s~s~-dg~I~Iwdl~---~~~~~----~~~-~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.+++++. .++..++-+. ++... .+. +|...|+++.|...+.+++||+.||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 4555555433 33222 333 4788899999998899999999999999995
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=6.8e-19 Score=190.97 Aligned_cols=254 Identities=17% Similarity=0.268 Sum_probs=198.5
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD--------TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS 572 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~--------t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~ 572 (784)
.++..|.+.|+.+.|.+....|++|+.||+|.+|++. ..+.+.+|++|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3788899999999999999999999999999999993 24678889999999999999999999999999999
Q ss_pred EEEEcCCC---------CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEeecC--CeeEEE
Q 047260 573 VRLWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--THITKG--GTAQVR 639 (784)
Q Consensus 573 I~IWdl~~---------~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~~~~~--~v~~v~ 639 (784)
|+.|++.. .......+.||.+.|+.+++++... .|++|+.||+++.|+...... ....+. -...+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence 99996542 2234567789999999999998766 588899999999999876544 111112 223344
Q ss_pred EecCC-CEEEEEECCCcEEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE
Q 047260 640 FQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQG-------HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE 710 (784)
Q Consensus 640 fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-------h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~ 710 (784)
+.... .+.++...-+.-.++|.+....+..+.. ....+..+.++|.+.+.+++.++ .|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 33322 2233333334444555555544444431 22457788999999999998877 999999999999999
Q ss_pred eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eeccc
Q 047260 711 LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAH 755 (784)
Q Consensus 711 l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h 755 (784)
...|...++++++.|+|.+|++++.|+.|++|.+....+. ....|
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9999999999999999999999999999999999777665 33344
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=3.7e-19 Score=199.07 Aligned_cols=274 Identities=16% Similarity=0.309 Sum_probs=217.4
Q ss_pred eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
...++.+.+|.+.|.|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|+.++.+.+...+++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-------eecCCeeEEEEecCCCEEEE
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-------ITKGGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-------~~~~~v~~v~fsp~~~~Ll~ 649 (784)
.+.++. .+..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. ..+.-+..+.|...+..+++
T Consensus 260 rl~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 999876 788899999999999999864 67789999999998111111 11234556667777888899
Q ss_pred EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCC
Q 047260 650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg 727 (784)
++.|+.-..|...... .+...+.-+.++.+- .+.+++-.+ .+++|++.+|..++.+.+|...+..+.++|..
T Consensus 334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 9999888877654321 122222222222222 334444444 89999999999999999999999999999987
Q ss_pred CEE-EEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 728 STL-LVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 728 ~~L-~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
..+ .+++.||+..|||+-.+..+ ...+ .+.+...+|++||..++...+-|.+.|.
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 665 56788999999999998776 2334 4556677899999988877777777764
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-16 Score=162.63 Aligned_cols=268 Identities=20% Similarity=0.308 Sum_probs=187.7
Q ss_pred CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260 438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS 517 (784)
Q Consensus 438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp 517 (784)
..++..+.|...+++++ ++|.|.++++|++.++. -+|..-...+.|.+.|..+.|.+
T Consensus 13 ~DlihdVs~D~~GRRmA-tCSsDq~vkI~d~~~~s----------------------~~W~~Ts~Wrah~~Si~rV~WAh 69 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMA-TCSSDQTVKIWDSTSDS----------------------GTWSCTSSWRAHDGSIWRVVWAH 69 (361)
T ss_pred cceeeeeeecccCceee-eccCCCcEEEEeccCCC----------------------CceEEeeeEEecCCcEEEEEecC
Confidence 35666677766666665 69999999999873332 34556677889999999999976
Q ss_pred --CCCEEEEEeCCCeEEEEECC---------CCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 518 --DGKLLASSGHDRKVVLWNMD---------TLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 518 --dg~~Lasgs~Dg~I~IWd~~---------t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
-|..+|+++.|++|.||.-. ......++......|++|.|.| -|-.||+++.||+||||+.-+....
T Consensus 70 PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 70 PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 68999999999999999752 2234456667788999999999 5778999999999999997654321
Q ss_pred e------------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260 585 S------------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 585 ~------------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~ 652 (784)
. .....+..+..|+.|+|..- ....|++|+.
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~-------------------------------------~~p~iAvgs~ 192 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM-------------------------------------HEPLIAVGSD 192 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccc-------------------------------------cCceEEEEcc
Confidence 1 11113445566666664310 0122333332
Q ss_pred C-----CcEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC----CCEEEEEeCCeEEEEeCCCC--------------
Q 047260 653 D-----KVVSIFDIETD----RQTHSLQGHAELVNYICWDTN----GDYLASVSQNLVKVWSMASG-------------- 705 (784)
Q Consensus 653 D-----g~I~IwDl~t~----~~i~~l~~h~~~V~sl~~spd----g~~Lasgsdd~I~IwDl~t~-------------- 705 (784)
+ +.++||..... ..+.++.+|..+|+.|+|.|+ -.+|++++.|-|+||.++..
T Consensus 193 e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~ 272 (361)
T KOG2445|consen 193 EDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDL 272 (361)
T ss_pred cCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCC
Confidence 2 35666654332 344566789999999999995 24678887666999998731
Q ss_pred ------ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC---CceEEecccCCceEEEEEe
Q 047260 706 ------ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE---NKSMTIAAHENIISALAQS 765 (784)
Q Consensus 706 ------~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~---~~~~~~~~h~~~V~slafs 765 (784)
+.+..+..|.+.|..+.|+-.|..|.+.+.||.|++|...- .++.....-++.|....|+
T Consensus 273 ~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~ 341 (361)
T KOG2445|consen 273 MTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS 341 (361)
T ss_pred ccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence 24556778999999999999999999999999999997543 2344333334444444443
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=5.1e-18 Score=168.91 Aligned_cols=280 Identities=20% Similarity=0.234 Sum_probs=197.5
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
.+..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4556779999999999988775 8889999999999999988888888 67889999999887 5688889999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCC-----CC---cEEEEEeCC-CeEEEEeCCCCeeEEee-------cCCeeEEEEe
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPK-----KT---DLFCFCDND-NEIQYWSINPFLCTHIT-------KGGTAQVRFQ 641 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~-----~~---~ll~sgs~d-g~I~iwDl~~~~~~~~~-------~~~v~~v~fs 641 (784)
+...... ..|.-.+.++-|.+. .. .+++.-++. ..+.+-|......+... .+.+.+..+.
T Consensus 84 ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9864421 112233334433321 11 111111111 01222222221222211 1344555432
Q ss_pred c-CCC--EEEEEECCCcEEEEECCCCeEE----------EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC--
Q 047260 642 P-RIG--QLLAAASDKVVSIFDIETDRQT----------HSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG-- 705 (784)
Q Consensus 642 p-~~~--~Ll~~s~Dg~I~IwDl~t~~~i----------~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~-- 705 (784)
. .+. .+++|..+|.|.+||+.++..+ .....|..+|.++.+.+.-..=++++ ++.+..|++...
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 3556667999999999987333 33446889999999986433333333 558888887643
Q ss_pred c--eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 706 E--CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 706 ~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
. .-.++......|..+.+.||++.+++++.|+.|+||+.++...+ .+..|.+.|++++|+|+.+++|.++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 2 22333344566889999999999999999999999999999888 67789999999999999999999999999999
Q ss_pred eC
Q 047260 783 WK 784 (784)
Q Consensus 783 Wd 784 (784)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=3.7e-16 Score=171.15 Aligned_cols=262 Identities=14% Similarity=0.219 Sum_probs=181.8
Q ss_pred EEEEeCCCeEEEEECCC-Cc--eeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCC-CcceeeeccCCCCCeE
Q 047260 522 LASSGHDRKVVLWNMDT-LQ--TESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAAN-PNFCSQAYTGHSSPIM 596 (784)
Q Consensus 522 Lasgs~Dg~I~IWd~~t-~~--~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~-~~~~~~~~~~h~~~V~ 596 (784)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 33446789999999964 33 444443 446678899999999987765 478899999973 2211111112234567
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE
Q 047260 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPF----LCTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS 669 (784)
Q Consensus 597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~ 669 (784)
.++|+|+++.+++++..++.|.+|++++. ..+.... .....++++|+++++++++. ++.|.+||+.+...+..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 89999999988887777999999999742 2222222 34577889999999987776 69999999986432211
Q ss_pred -----Ee-CCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCC--C--ceEEEeccC------CCceEEEEEecCCCEEE
Q 047260 670 -----LQ-GHAELVNYICWDTNGDYLASVSQ--NLVKVWSMAS--G--ECIQELSSN------GNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 670 -----l~-~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t--~--~~i~~l~~~------~~~I~sl~fspdg~~L~ 731 (784)
+. ........+.|+|+|++++++.+ +.|.+||+.. + +.+.++... ......+.++|++++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 11 12234578999999999988874 4999999973 3 334444321 11234688999999999
Q ss_pred EEEC-CCeEEEEECCCCc-eEEeccc---CCceEEEEEeCCCCEEEEEEC-CCcEEEeC
Q 047260 732 VVGG-ISSLELWNMAENK-SMTIAAH---ENIISALAQSPVTGMVASASH-DSSVKLWK 784 (784)
Q Consensus 732 s~s~-dg~I~Iwdl~~~~-~~~~~~h---~~~V~slafspdg~~LaSgs~-DG~V~IWd 784 (784)
++.. ++.|.+|++.... ...+..+ ......+.|+|+|++|++++. +++|.||+
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 9865 5799999986543 2333322 234568999999999998775 89999984
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-17 Score=175.39 Aligned_cols=217 Identities=18% Similarity=0.319 Sum_probs=181.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY 588 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~ 588 (784)
.-+|++......|+++|+..++|+|||+....+.+.+++|...|+++.++-...|||+++..|.|.|..+.++.. ...+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccce
Confidence 344555444558999999999999999998788888999999999999999999999999999999999988663 2333
Q ss_pred c-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE----eecCCeeEEEEecCCCE-EEEEECCCcEEEEECC
Q 047260 589 T-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH----ITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIE 662 (784)
Q Consensus 589 ~-~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~----~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~ 662 (784)
. +....|.-+.|++..+.+|.+++.+|.|.+||+.....+. .|..+...|+|+|.... |++.+.|+.|.+||.+
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 3 3345577999999999999999999999999998765543 45578888999997665 5667889999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCC-ceEEEeccCCCceEEEEEecCC
Q 047260 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSY 727 (784)
Q Consensus 663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg 727 (784)
..+....+. ...+...++|.++|.+|+.|.. +.|..||++.. .++..+..|...|++++|-|..
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 877766665 5678899999999999999985 49999999965 6788899999999999998764
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-17 Score=180.31 Aligned_cols=261 Identities=19% Similarity=0.239 Sum_probs=196.5
Q ss_pred CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
.+..++.+..|.+ ....+.+++.|+.+.+|+..+. .......+..+.+|++|.++|.|+++
T Consensus 292 s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~------------------~~s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 292 SHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKA------------------KKSAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred cchhhhhhhhcCC-CCCeEEEeccccchhhhhhccc------------------CCccccceeeeEEEecccCceEEEEe
Confidence 3444455556644 4444457999999999987332 23445677899999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC----------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 516 SSDGKLLASSGHDRKVVLWNMDT----------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 516 spdg~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
.+++..+++|+.||+|+.|++.. ......+.+|.+.|+.+++++....|++|+.||+|++|+......+.
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~ 432 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCT 432 (577)
T ss_pred cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccc
Confidence 99999999999999999996541 13445677999999999999988899999999999999987655322
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----------CCeeEEEEecCCCEEEEEECCCc
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----------GGTAQVRFQPRIGQLLAAASDKV 655 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~Dg~ 655 (784)
.......+...++++-.....+.++...-+.--+++......+..+. ..+..+.++|.....+++..|+.
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 22222223445666654443333333333444444444443333333 34567888999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG 715 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~ 715 (784)
|+++|..++++++....|...++++++.|+|-+|++++.+ .|++|.+....|+.....|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999999999999999999965 99999998888877776553
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.5e-15 Score=166.28 Aligned_cols=265 Identities=12% Similarity=0.137 Sum_probs=183.4
Q ss_pred EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEe-CCCeEE
Q 047260 454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSG-HDRKVV 532 (784)
Q Consensus 454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~I~ 532 (784)
..+...|+.|.+|+....+ .+..+..+. +.+....++++|++++|++++ .++.|.
T Consensus 5 y~~~~~~~~I~~~~~~~~g-----------------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~ 60 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEG-----------------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVL 60 (330)
T ss_pred EEEcCCCCCEEEEEECCCC-----------------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEE
Confidence 3445678889999773221 112333333 345677899999999887764 578899
Q ss_pred EEECC-CCce--eeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcce---eeeccCCCCCeEEEEEcCCCC
Q 047260 533 LWNMD-TLQT--ESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFC---SQAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 533 IWd~~-t~~~--~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~---~~~~~~h~~~V~sl~~sp~~~ 605 (784)
+|+++ +++. +... ........++|+|++++|++++. ++.|.+|++++.... ...+ .+...+.+++++|++.
T Consensus 61 ~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 61 SYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNR 138 (330)
T ss_pred EEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCC
Confidence 99997 3332 2222 23345678999999999988875 889999999743311 1222 2234567789999999
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEE--------e-ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCC--C--eEEEEEe
Q 047260 606 DLFCFCDNDNEIQYWSINPFLCTH--------I-TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIET--D--RQTHSLQ 671 (784)
Q Consensus 606 ~ll~sgs~dg~I~iwDl~~~~~~~--------~-~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t--~--~~i~~l~ 671 (784)
.+++++..++.|.+||+++...+. . .......+.|+|++++++++.. ++.|.+||+.. + +.+..+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 888888889999999997632221 1 1234567899999999999887 89999999973 2 3333333
Q ss_pred CC------CCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCc----eEEEeccCCCceEEEEEecCCCEEEEEEC-CCe
Q 047260 672 GH------AELVNYICWDTNGDYLASVSQ--NLVKVWSMASGE----CIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISS 738 (784)
Q Consensus 672 ~h------~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~----~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~ 738 (784)
.+ ......+.++|++++|+++.. +.|.+|++.... .+..+.. ......+.++|++++|+++.. +++
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCc
Confidence 21 112346889999999998864 499999986532 2333322 234567899999999998876 789
Q ss_pred EEEEECC
Q 047260 739 LELWNMA 745 (784)
Q Consensus 739 I~Iwdl~ 745 (784)
|.+|+++
T Consensus 298 v~v~~~~ 304 (330)
T PRK11028 298 ISVYEID 304 (330)
T ss_pred EEEEEEc
Confidence 9999875
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.3e-17 Score=174.61 Aligned_cols=253 Identities=17% Similarity=0.278 Sum_probs=183.7
Q ss_pred cCCCceEeccccCCcceeEEeec--CCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC-CCEEEE
Q 047260 448 EDIDRFADVGSIDENMESLLSHD--GGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD-GKLLAS 524 (784)
Q Consensus 448 ~~~~~ll~~gS~D~~v~~~~~~~--~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd-g~~Las 524 (784)
....+++++|.+|..+.+|+..= .--+...+|........ ..-..-....+|++.|.+++|+.+ ...||+
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~-------k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS 261 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKK-------KKGKRSNSASGHTDAVLALSWNRNFRNVLAS 261 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhh-------hhcccccccccchHHHHHHHhccccceeEEe
Confidence 34667899999999999997631 11111112211100000 000011223579999999999885 458999
Q ss_pred EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC
Q 047260 525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK 603 (784)
Q Consensus 525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~ 603 (784)
|+.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|++.|.+.....-..+ ...+.|-.++|.|.
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPH 340 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCC
Confidence 99999999999999999999999999999999999 67799999999999999999644222222 34678999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCC-ee---EEeecCCeeEEEEecCCC-EEEEEECCCcEEEEECCCCeE--EEEEeCCCCC
Q 047260 604 KTDLFCFCDNDNEIQYWSINPF-LC---THITKGGTAQVRFQPRIG-QLLAAASDKVVSIFDIETDRQ--THSLQGHAEL 676 (784)
Q Consensus 604 ~~~ll~sgs~dg~I~iwDl~~~-~~---~~~~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~--i~~l~~h~~~ 676 (784)
....++++..||.|+-+|+|.. ++ +..|.++|.++++++... .+.+++.|+.|++|++....+ ++.-.-.-+.
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence 9999999999999999999964 44 455678999999987654 466777799999999875433 2221112234
Q ss_pred EEEEEEcCCCCE-EEEEeCC-eEEEEeCCCCceE
Q 047260 677 VNYICWDTNGDY-LASVSQN-LVKVWSMASGECI 708 (784)
Q Consensus 677 V~sl~~spdg~~-Lasgsdd-~I~IwDl~t~~~i 708 (784)
..|.++.|+-.+ ++.|+.. .++|||+.+...+
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 667777776554 4445544 8999999876544
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.3e-18 Score=180.41 Aligned_cols=288 Identities=17% Similarity=0.327 Sum_probs=225.5
Q ss_pred ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc--CCCEEEEEeCCCe
Q 047260 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP--NSSQLATASVDKS 572 (784)
Q Consensus 496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp--dg~~Latgs~Dg~ 572 (784)
.+.....|..|.+.|..+.|...|..|++|+.|..|.+||+.+++....+. +|...|..-.|.| +...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 344556788999999999999999999999999999999999888777664 7999999889988 4567999999999
Q ss_pred EEEEcCCCCccee--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee------EEeecC---CeeEEEEe
Q 047260 573 VRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC------THITKG---GTAQVRFQ 641 (784)
Q Consensus 573 I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~------~~~~~~---~v~~v~fs 641 (784)
|++=.+.....+. +.+..|.++|..++.-|+..+-|.+|+.|+.+.-+|++.... ....+. ....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 9998776544333 445679999999999999999999999999999999985322 211222 45678888
Q ss_pred cCCC-EEEEEECCCcEEEEECCCCe------EEEEEe------CCCCCEEEEEEcCC-CCEEEEEeCCeEEEEeCCC--C
Q 047260 642 PRIG-QLLAAASDKVVSIFDIETDR------QTHSLQ------GHAELVNYICWDTN-GDYLASVSQNLVKVWSMAS--G 705 (784)
Q Consensus 642 p~~~-~Ll~~s~Dg~I~IwDl~t~~------~i~~l~------~h~~~V~sl~~spd-g~~Lasgsdd~I~IwDl~t--~ 705 (784)
|... .+++++.|-.+++||.+.-. .+..+. .....|+|++++.+ +.+|++..+..|+++.-.- |
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8776 67788889999999987532 122322 23457999999955 5566776677999995432 2
Q ss_pred ----------ceEEE-eccCCC--ceEEEE-EecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCE
Q 047260 706 ----------ECIQE-LSSNGN--QFHSCV-FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGM 770 (784)
Q Consensus 706 ----------~~i~~-l~~~~~--~I~sl~-fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~ 770 (784)
..+.. +++|.+ .|..+- |-|...|+++|+.-|.|.||+-.+++.+ .+.+....|+||.-+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 12222 666643 466665 5688899999999999999999999888 44455558999999999999
Q ss_pred EEEEECCCcEEEe
Q 047260 771 VASASHDSSVKLW 783 (784)
Q Consensus 771 LaSgs~DG~V~IW 783 (784)
||+++-|..||||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=8.7e-17 Score=162.02 Aligned_cols=233 Identities=18% Similarity=0.328 Sum_probs=176.9
Q ss_pred cCCCceEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCcee----ee-----cCCCCCCeEEEEEcc-CCCEEEEEeC
Q 047260 505 SRNSKVTCCHFSSDGK-----LLASSGHDRKVVLWNMDTLQTE----ST-----PEDHKSVVTDVRFRP-NSSQLATASV 569 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~-----~Lasgs~Dg~I~IWd~~t~~~~----~~-----l~~h~~~It~i~fsp-dg~~Latgs~ 569 (784)
.|.-+++.+-|.|+.+ +|||++ ..+|+|.+...+.. .. -..+..++++..|+. +-++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999763 566654 35999998732111 11 135678999999998 7889999999
Q ss_pred CCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-c-----CCeeEEEEe
Q 047260 570 DKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-K-----GGTAQVRFQ 641 (784)
Q Consensus 570 Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-~-----~~v~~v~fs 641 (784)
|-++.|||++++. .+...+..|..+|..|+|...+..+|++++.||.|++||++......+. + .+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999853 3566778999999999999999999999999999999999975443322 2 345667888
Q ss_pred cCCCE-EEEEEC-CCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC-CCEEEEEeCC-eEEEEeCCCC------ceEEE
Q 047260 642 PRIGQ-LLAAAS-DKVVSIFDIETD-RQTHSLQGHAELVNYICWDTN-GDYLASVSQN-LVKVWSMASG------ECIQE 710 (784)
Q Consensus 642 p~~~~-Ll~~s~-Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t~------~~i~~ 710 (784)
+.... +++-.. ...|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++|| .+.|||+..- .++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 76654 444444 478999999975 678899999999999999995 5678888888 8999999753 22333
Q ss_pred eccCCCceEEEEEecCC-CEEEEEECCCeEEE
Q 047260 711 LSSNGNQFHSCVFHPSY-STLLVVGGISSLEL 741 (784)
Q Consensus 711 l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~I 741 (784)
+. .+..|+.+.|++.. .+|+++.. +++.|
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 33 56789999999654 45555544 44444
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=5.2e-16 Score=158.43 Aligned_cols=276 Identities=17% Similarity=0.241 Sum_probs=203.0
Q ss_pred ccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeec-CCCceEEEEEc-------
Q 047260 445 NLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRS-RNSKVTCCHFS------- 516 (784)
Q Consensus 445 ~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~-H~~~V~~l~fs------- 516 (784)
...+|..-+| +-+-|..+.+|....+.-... ......+.+..+++- ....|...+|-
T Consensus 56 kWSPDGSciL-~~sedn~l~~~nlP~dlys~~--------------~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q 120 (406)
T KOG2919|consen 56 KWSPDGSCIL-SLSEDNCLNCWNLPFDLYSKK--------------ADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ 120 (406)
T ss_pred eeCCCCceEE-eecccCeeeEEecChhhcccC--------------CCCccccccceeEEeccCCEEEEEEeeeccccCC
Confidence 3345666665 577888999997754431111 111222222222222 34558888886
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecCC--CCC---CeEEEEEccCCCEEEEEeCCCeEEEEcCC-CCccee-ee--
Q 047260 517 SDGKLLASSGHDRKVVLWNMDTLQTESTPED--HKS---VVTDVRFRPNSSQLATASVDKSVRLWDAA-NPNFCS-QA-- 587 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~---~It~i~fspdg~~Latgs~Dg~I~IWdl~-~~~~~~-~~-- 587 (784)
|+..++|+.+.+.-|++||.-+++....+.. |-+ ...+++|+|||..|++| ....|+|||+. .+..+. ..
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 5778999999999999999999998887753 333 45689999999999887 56799999994 333221 11
Q ss_pred ---ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEeecCCeeEEEEecCCCEEEEEEC-CCcEEEEE
Q 047260 588 ---YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFD 660 (784)
Q Consensus 588 ---~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwD 660 (784)
..+..+.|.|++|+|.....++.++....+-||.-.... .+..+.+.|+.++|.++|++|++|+. |..|..||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 123467899999999988899999988888887665443 34456689999999999999999998 78999999
Q ss_pred CCCC-eEEEEEeCCCC-CEEE--EEEcCCCCEEEEEe-CCeEEEEeCCC-CceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260 661 IETD-RQTHSLQGHAE-LVNY--ICWDTNGDYLASVS-QNLVKVWSMAS-GECIQELSSNGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 661 l~t~-~~i~~l~~h~~-~V~s--l~~spdg~~Lasgs-dd~I~IwDl~t-~~~i~~l~~~~~~I~sl~fspdg~~L~s~s 734 (784)
++.. .++..+..|.+ .-.. ....|++++|++|+ ++.|++||+++ +..+..+..+...++.+.++|--..+++++
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 9875 56666766655 2223 34568999999996 56999999998 777888888899999999999977676666
Q ss_pred CC
Q 047260 735 GI 736 (784)
Q Consensus 735 ~d 736 (784)
..
T Consensus 360 Gq 361 (406)
T KOG2919|consen 360 GQ 361 (406)
T ss_pred Cc
Confidence 54
No 175
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=3e-16 Score=182.50 Aligned_cols=288 Identities=19% Similarity=0.228 Sum_probs=210.4
Q ss_pred eeEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccCCCEEEEEe
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPNSSQLATAS 568 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspdg~~Latgs 568 (784)
...+..+..|...|..++.+++. .+|++|+.||+|+|||.... +...++......+.++.+.+.+..+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 35678889999999999998855 89999999999999998632 22233333567899999999999999999
Q ss_pred CCCeEEEEcCCCCcc------eeeeccC-CCCCeE-EEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEee-----cCC
Q 047260 569 VDKSVRLWDAANPNF------CSQAYTG-HSSPIM-SLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHIT-----KGG 634 (784)
Q Consensus 569 ~Dg~I~IWdl~~~~~------~~~~~~~-h~~~V~-sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~ 634 (784)
.||.|++.+++-.+. ..+.... ..+.+. .-+|..... ..++.+...+.|..||++........ .+-
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 999999999875221 1111111 122333 334443333 37778888999999999875544333 377
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcCC---CCEEEEEeC---CeEEEEeCCCCce
Q 047260 635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ-GHAELVNYICWDTN---GDYLASVSQ---NLVKVWSMASGEC 707 (784)
Q Consensus 635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~spd---g~~Lasgsd---d~I~IwDl~t~~~ 707 (784)
+++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|..++.+|- ....++++. +.|.+|++.+|.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 8999999999999999999999999999998888875 35568888877763 345555443 3999999999876
Q ss_pred EEEeccC-------------------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE------------------
Q 047260 708 IQELSSN-------------------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM------------------ 750 (784)
Q Consensus 708 i~~l~~~-------------------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~------------------ 750 (784)
-..+... .-....+.+...+..+++++.|..|+.||....+..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 6655332 111234555556678999999999999997542211
Q ss_pred ---------------------------------------EecccCCceEEEEEeCCC-CEEEEEECCCcEEEeC
Q 047260 751 ---------------------------------------TIAAHENIISALAQSPVT-GMVASASHDSSVKLWK 784 (784)
Q Consensus 751 ---------------------------------------~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IWd 784 (784)
....|..+|+++++.... .+|++++.||.|+||+
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 012377788888887654 5899999999999996
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.3e-16 Score=160.68 Aligned_cols=246 Identities=21% Similarity=0.326 Sum_probs=178.9
Q ss_pred eEeecCCCceEEEEEcC-CCCEEEEEeCC-------CeEEEEECCC---------CceeeecC-CCCCCeEEEEEccCCC
Q 047260 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHD-------RKVVLWNMDT---------LQTESTPE-DHKSVVTDVRFRPNSS 562 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fsp-dg~~Lasgs~D-------g~I~IWd~~t---------~~~~~~l~-~h~~~It~i~fspdg~ 562 (784)
+.|..|.+.|+.++-+| |.++|+|+..+ ..+.||.+.. .+.+..+. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 34667899999999999 55677776542 2478998863 23344443 4567999999999999
Q ss_pred EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEec
Q 047260 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQP 642 (784)
Q Consensus 563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp 642 (784)
.|++-. |..|.+|++.........+.. +++.. .....++-+|+|
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~s-------------------s~s~e----------------~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLS-------------------SESAE----------------MRHSFTSGAWSP 180 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecc-------------------ccccc----------------ccceecccccCC
Confidence 988875 889999999876532221110 00000 011122334555
Q ss_pred -CCCEEEEEECCCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCC-EEEEEeCC-eEEEEeCCCC-ceEEEeccCCCc
Q 047260 643 -RIGQLLAAASDKVVSIFDIETDRQTHSLQ-GHAELVNYICWDTNGD-YLASVSQN-LVKVWSMASG-ECIQELSSNGNQ 717 (784)
Q Consensus 643 -~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~-~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~ 717 (784)
....-++...|+++..||+++.+....+. .|...|..+.|+|+-. +|++|+|+ .|+|||.+.- .++.++.+|...
T Consensus 181 HHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 181 HHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred CCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 23445566678999999999887777765 4888999999999866 56677766 9999999864 689999999999
Q ss_pred eEEEEEecCC-CEEEEEECCCeEEEEECCC------------------------------CceEEecccCCceEEEEEeC
Q 047260 718 FHSCVFHPSY-STLLVVGGISSLELWNMAE------------------------------NKSMTIAAHENIISALAQSP 766 (784)
Q Consensus 718 I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~------------------------------~~~~~~~~h~~~V~slafsp 766 (784)
|.++.|+|.. ..|++++.|..|.+|.... +...++..|++.|.+++|+.
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 9999999975 4678888999999985432 11125667999999999998
Q ss_pred CCC-EEEEEECCCcEEE
Q 047260 767 VTG-MVASASHDSSVKL 782 (784)
Q Consensus 767 dg~-~LaSgs~DG~V~I 782 (784)
-.. +||+-+.||+|.|
T Consensus 341 adPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCeeEEEeccCceEEe
Confidence 666 6788899999876
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=9.6e-17 Score=164.24 Aligned_cols=236 Identities=20% Similarity=0.359 Sum_probs=179.3
Q ss_pred CCCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCC
Q 047260 506 RNSKVTCCHFSSD----GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAAN 580 (784)
Q Consensus 506 H~~~V~~l~fspd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~ 580 (784)
|......|+|+-| ..+||.|+.-|.|+|.|+.+++....+.+|...|+.|.|+|+ ..+|+++|.|.+||+|++.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6666777888763 348999999999999999999999999999999999999994 57899999999999999998
Q ss_pred Ccceeeec---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE----------------------------
Q 047260 581 PNFCSQAY---TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH---------------------------- 629 (784)
Q Consensus 581 ~~~~~~~~---~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~---------------------------- 629 (784)
.. ++..+ .+|.+.|.+++|++++. .+++|+.|..|++|+++..+...
T Consensus 168 ~~-Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 168 DV-CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred Ce-EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 66 55554 47999999999999998 88999999999999997311110
Q ss_pred ---eecCCeeEEEEecCCCEEEEEECCCcEEEEEC-CCCeE-------------EEEEeCCCCCEEEE--EEcCCCCEEE
Q 047260 630 ---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI-ETDRQ-------------THSLQGHAELVNYI--CWDTNGDYLA 690 (784)
Q Consensus 630 ---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl-~t~~~-------------i~~l~~h~~~V~sl--~~spdg~~La 690 (784)
.+...|.|+.| -|+++++-+.++.|..|.. +-++. +..+.-....|.-+ +|++-++.||
T Consensus 246 t~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred ccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 01112222222 2467888888999999987 22222 22233333444444 4567788899
Q ss_pred EEeCC-eEEEEeCCCCceE--EEec--cCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 691 SVSQN-LVKVWSMASGECI--QELS--SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 691 sgsdd-~I~IwDl~t~~~i--~~l~--~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
.|... .|.+||++..++. .++. .....|...+|+.|+..|+...+|++|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 88855 9999999986552 2222 235678999999999999999999999999854
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=3.5e-16 Score=163.32 Aligned_cols=249 Identities=16% Similarity=0.241 Sum_probs=186.7
Q ss_pred CCCEEEEE---eCCCeEEEEECC-CCce---eeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCc------c
Q 047260 518 DGKLLASS---GHDRKVVLWNMD-TLQT---ESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPN------F 583 (784)
Q Consensus 518 dg~~Lasg---s~Dg~I~IWd~~-t~~~---~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~------~ 583 (784)
+.++||+. +..|...|.-+. +|+. .-.+.+|+++|.+++|+| +...||+||.|.+|.||.+..+. .
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 45566653 223344444432 3332 234568999999999999 67789999999999999987543 2
Q ss_pred eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDI 661 (784)
Q Consensus 584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl 661 (784)
.+..+.+|...|-.+.|+|.-.++|++++.|..|.+|++.+++.+..+ ..-|.++.|+.+|..|++++.|+.|+|||.
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 466788999999999999999999999999999999999988765544 467889999999999999999999999999
Q ss_pred CCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe----CCeEEEEeCCCCc---eEEEeccCCCceEEEEEecCCCEEEEE
Q 047260 662 ETDRQTHSLQGHAE-LVNYICWDTNGDYLASVS----QNLVKVWSMASGE---CIQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 662 ~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgs----dd~I~IwDl~t~~---~i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
++++.+..-.+|.+ .-..+.|-.+|.++.+|. +..+.+||..+-+ .+.++.. .+.|.---|.++.+.++.+
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~ 281 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLC 281 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEE
Confidence 99999988877876 345567888899776665 3489999987643 2334433 3556666788888887665
Q ss_pred E-CCCeEEEEECCCCceE----EecccCCceEEEEEeCC
Q 047260 734 G-GISSLELWNMAENKSM----TIAAHENIISALAQSPV 767 (784)
Q Consensus 734 s-~dg~I~Iwdl~~~~~~----~~~~h~~~V~slafspd 767 (784)
+ +|+.|+.|.+...... .......+=..+.|-|.
T Consensus 282 GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 282 GKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 5 5789999999887643 12233344445555553
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.8e-15 Score=172.17 Aligned_cols=256 Identities=17% Similarity=0.278 Sum_probs=190.5
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce-----eeeccCCCCCeEEEEEcC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC-----SQAYTGHSSPIMSLDFHP 602 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~-----~~~~~~h~~~V~sl~~sp 602 (784)
+.+.||+++..............|+|+.|+| +..+++.|+.+|.|.+||++..... ......|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999987633333335678899999999 7778899999999999999876531 122346899999999976
Q ss_pred CCC-cEEEEEeCCCeEEEEeCCCCee--------EE-------eecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCC-
Q 047260 603 KKT-DLFCFCDNDNEIQYWSINPFLC--------TH-------ITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETD- 664 (784)
Q Consensus 603 ~~~-~ll~sgs~dg~I~iwDl~~~~~--------~~-------~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~- 664 (784)
+.. .-|++++.||.|..|+++.... .. .....++++.|.+.. ..+++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 533 3466777799999999874322 01 112456788887755 45777888899887433222
Q ss_pred --e-----EEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCeEEEEeCC-CCceEEEeccCCCceEEEEEecCCCE-EEEEE
Q 047260 665 --R-----QTHSLQGHAELVNYICWDTNGD-YLASVSQNLVKVWSMA-SGECIQELSSNGNQFHSCVFHPSYST-LLVVG 734 (784)
Q Consensus 665 --~-----~i~~l~~h~~~V~sl~~spdg~-~Lasgsdd~I~IwDl~-t~~~i~~l~~~~~~I~sl~fspdg~~-L~s~s 734 (784)
. ....+..|.++|+++.++|-+. ++.+++|.+|+||... ...++..+..+...|++++|+|.... |+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 1 1234456899999999999665 4555556699999988 67788888888888999999999866 55555
Q ss_pred CCCeEEEEECCCCceE---EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 735 GISSLELWNMAENKSM---TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 735 ~dg~I~Iwdl~~~~~~---~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.||.|.|||+...... ....+....+.+.|++.+++|++|+..|.|.+|+
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 6899999999765433 3334466678888999999999999999999985
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=172.42 Aligned_cols=276 Identities=20% Similarity=0.359 Sum_probs=206.2
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT----LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~ 580 (784)
.|.-.++|.++||+++++|+|..||.|.||.--. ......+.-|...|++++|+++|.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999996432 223345667899999999999999999999999999999998
Q ss_pred CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--------------ecCCeeEEEEecCCCE
Q 047260 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--------------TKGGTAQVRFQPRIGQ 646 (784)
Q Consensus 581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--------------~~~~v~~v~fsp~~~~ 646 (784)
++ ...+..-.++|..+.++||+. +++.+..|..|.+........... ..+-.+.++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 77 555666788999999999988 555566688888887643221111 1233566889998888
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEeC-----CC------CCEEEEEEcCCCCEEEEEe---------CC--eEEEEeCCC
Q 047260 647 LLAAASDKVVSIFDIETDRQTHSLQG-----HA------ELVNYICWDTNGDYLASVS---------QN--LVKVWSMAS 704 (784)
Q Consensus 647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~-----h~------~~V~sl~~spdg~~Lasgs---------dd--~I~IwDl~t 704 (784)
++..+..|.|.+||+.+.+.+..+.. +. ..++.++.+..|.++++.. ++ .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999998877666531 22 2467777788899999874 33 789997655
Q ss_pred Cc----eEEEe-ccCCCceEEEEEe-cCCC-EEEEEECCCeEEEEECCCCc----------eE-EecccCCceEEEEEeC
Q 047260 705 GE----CIQEL-SSNGNQFHSCVFH-PSYS-TLLVVGGISSLELWNMAENK----------SM-TIAAHENIISALAQSP 766 (784)
Q Consensus 705 ~~----~i~~l-~~~~~~I~sl~fs-pdg~-~L~s~s~dg~I~Iwdl~~~~----------~~-~~~~h~~~V~slafsp 766 (784)
.. +...+ ..|+..+...++. +... ..++++.||.++||-+.+.+ +. .-..|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 43 22222 3566655555544 3333 78999999999999884322 11 1124788999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 047260 767 VTGMVASASHDSSVKLWK 784 (784)
Q Consensus 767 dg~~LaSgs~DG~V~IWd 784 (784)
||.+|+ ++.|+.|.|||
T Consensus 520 dGslla-~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLLA-VSFDDTITIWD 536 (792)
T ss_pred CCcEEE-EecCCEEEEec
Confidence 995555 56788999997
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.2e-14 Score=151.22 Aligned_cols=231 Identities=15% Similarity=0.292 Sum_probs=179.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--eEEEEcCCCCcce
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--SVRLWDAANPNFC 584 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~ 584 (784)
...|..+.|..|...|..|+.|| .++|+.+..............|..+-|+ ..++|..+.+. .+++++++....+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577788999999999999998 7888887655533333334456666676 44666666553 4899998876544
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC------CeeEEEEecCCCEEEEEEC--CCcE
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG------GTAQVRFQPRIGQLLAAAS--DKVV 656 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~------~v~~v~fsp~~~~Ll~~s~--Dg~I 656 (784)
...+ ...+|.+|.++.+ .++++-.+ .|+|||++..+.++.+.. ++..+.+++.+.+++.-+. .|.|
T Consensus 82 Ce~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 82 CEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 3333 3467999999755 34455533 499999999888876652 3455556666667776554 6999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEE
Q 047260 657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLV 732 (784)
Q Consensus 657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s 732 (784)
.+||+.+-+.+..+..|++.+.+++|+++|.+||++++. .|||+.+.+|..+.+|... ...|.+++|+|++.+|.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 999999999999999999999999999999999999976 8999999999999999754 346789999999999999
Q ss_pred EECCCeEEEEECCC
Q 047260 733 VGGISSLELWNMAE 746 (784)
Q Consensus 733 ~s~dg~I~Iwdl~~ 746 (784)
.+..++|+||.++.
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 99999999998764
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=9.1e-16 Score=175.94 Aligned_cols=277 Identities=15% Similarity=0.216 Sum_probs=205.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC---CCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK---SVVTDVRFRP--NSSQLATASVDKSVRLWDAAN 580 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~---~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~ 580 (784)
....-..+.|+|-...++++...-.|+|||.+.++.+..|..+. ..|+.+.+.. |..++++|+.||.||||+--.
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 34456778899988899999888899999999999888876543 5789998876 567899999999999997432
Q ss_pred Cc----ceeeecc-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEE-ecCC
Q 047260 581 PN----FCSQAYT-------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRF-QPRI 644 (784)
Q Consensus 581 ~~----~~~~~~~-------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~f-sp~~ 644 (784)
.. ..+..+. +..+.-.-++|......++++|+ -..|+|||.....+..... ..++.+.- ...|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 21 1222211 11122245677777666666655 7899999999877776554 23444442 3346
Q ss_pred CEEEEEECCCcEEEEECCCC---eEEEEEeCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEeCCCCceEE--EeccC-
Q 047260 645 GQLLAAASDKVVSIFDIETD---RQTHSLQGHAEL--VNYICWDTNGDY-LASVS-QNLVKVWSMASGECIQ--ELSSN- 714 (784)
Q Consensus 645 ~~Ll~~s~Dg~I~IwDl~t~---~~i~~l~~h~~~--V~sl~~spdg~~-Lasgs-dd~I~IwDl~t~~~i~--~l~~~- 714 (784)
+.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|-- |++++ +|.|++||++...... ++..|
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 88999999999999999875 356677778887 999999886653 77766 6699999999852222 22222
Q ss_pred --CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-------cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 715 --GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-------HENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 715 --~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-------h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++..+++..|+....|++|+. +.|+||++.......+.. ..+.+.|++|+|-.-+||+|+.|..|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998888888 999999998766543332 345689999999999999999999999983
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.4e-15 Score=148.36 Aligned_cols=224 Identities=16% Similarity=0.230 Sum_probs=170.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEcCCC---------CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 047260 551 VVTDVRFRPNSSQLATASVDKSVRLWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621 (784)
Q Consensus 551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~---------~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD 621 (784)
.|..-+|+|.+++|++|+.+|.|.++.+.+ ++..+..+.+|+++|..++|+.+ ++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEee
Confidence 456668999999999999999999998863 23344556799999999999833 666666 69999998
Q ss_pred CCCCeeEEe----------------ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260 622 INPFLCTHI----------------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN 685 (784)
Q Consensus 622 l~~~~~~~~----------------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd 685 (784)
.+....... .-..|+.+...|..+.++.++.|+.++.||+++++..+.+++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 864322100 0135778889999999999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCeEEEEeCCCCceEEEeccC----------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc
Q 047260 686 GDYLASVS-QNLVKVWSMASGECIQELSSN----------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA 754 (784)
Q Consensus 686 g~~Lasgs-dd~I~IwDl~t~~~i~~l~~~----------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~ 754 (784)
...+++|+ |++++|||.++++++..+... ...|-+++.+.+ ++++|+ ...+.+|.++..++.....
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEecC-CCceeEEeccCCCceEEEe
Confidence 44455555 559999999999998887532 234555555444 565554 4579999999999988888
Q ss_pred cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 755 HENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 755 h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
-..+|..+.|..| .+++++....|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888988988754 56666655555544
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=1.9e-15 Score=152.31 Aligned_cols=241 Identities=18% Similarity=0.308 Sum_probs=156.7
Q ss_pred CCCCcceeEEeEee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeec-----CCCCCCeEEEEEcc--CC
Q 047260 491 PTKGFTFCEVGCIR-SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT-ESTP-----EDHKSVVTDVRFRP--NS 561 (784)
Q Consensus 491 ~~~~~~~~~i~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l-----~~h~~~It~i~fsp--dg 561 (784)
.+...++..+..|. .+-+.|.|+.|.|++..|++-. |..|.+|++..... +..+ .+|....++-+|+| ++
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 34556677777777 6778999999999999998765 88899999987655 3332 24566788899999 77
Q ss_pred CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE---EeecCCeeE
Q 047260 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CT---HITKGGTAQ 637 (784)
Q Consensus 562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~---~~~~~~v~~ 637 (784)
+.+++. .|+++..||+++.+....+-..|...|..+.|+|+...++++|++||.|++||.+..+ .+ ..+..-+.+
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 777776 5789999999987766677778999999999999999999999999999999987432 12 222234556
Q ss_pred EEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEeCCCCceEEEeccCC
Q 047260 638 VRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNG 715 (784)
Q Consensus 638 v~fsp~~~~-Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Las-gsdd~I~IwDl~t~~~i~~l~~~~ 715 (784)
|+|+|.... ++++++|..|.+ ........-..|.|..|..-.-. .+...++ -+ ....+.++..|.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~L----------sca~svSSE~qi~~~~dese~e~~dseer~k--pL-~dg~l~tydehE 330 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNL----------SCASSVSSEQQIEFEDDESESEDEDSEERVK--PL-QDGQLETYDEHE 330 (370)
T ss_pred EEecCccceEEEecCCCceeEE----------EeccccccccccccccccccCcchhhHHhcc--cc-cccccccccccc
Confidence 666665433 334444443321 00000000001111111000000 0000111 01 112455778899
Q ss_pred CceEEEEEecCCCEE-EEEECCCeEEEEECCC
Q 047260 716 NQFHSCVFHPSYSTL-LVVGGISSLELWNMAE 746 (784)
Q Consensus 716 ~~I~sl~fspdg~~L-~s~s~dg~I~Iwdl~~ 746 (784)
..|++++|+.-.+++ ++-+.||.+.|=.+..
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 999999999888875 5567889988866543
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=2.3e-15 Score=171.23 Aligned_cols=242 Identities=20% Similarity=0.289 Sum_probs=187.2
Q ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--ee----ecCCCCCCeEEEEEccCC--CEEEEEeCCCeEEEE
Q 047260 506 RNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTLQT--ES----TPEDHKSVVTDVRFRPNS--SQLATASVDKSVRLW 576 (784)
Q Consensus 506 H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~----~l~~h~~~It~i~fspdg--~~Latgs~Dg~I~IW 576 (784)
-...|+|++|+| +..+||.|+.+|.|.+||+..+.. .. ....|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567799999999 666888899999999999986654 22 223688999999998744 449999999999999
Q ss_pred cCCCCcceeee-----cc------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCCe--------eEEeecCC
Q 047260 577 DAANPNFCSQA-----YT------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPFL--------CTHITKGG 634 (784)
Q Consensus 577 dl~~~~~~~~~-----~~------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl---~~~~--------~~~~~~~~ 634 (784)
+++.-...... .. .....+++++|.+.....|++|+++|.|..-+. +... ....+.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88753321111 11 123468999999999999999999999987333 2222 12334578
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEe-CCeEEEEeCCCC--ceEE
Q 047260 635 TAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHAELVNYICWDTNGDYL-ASVS-QNLVKVWSMASG--ECIQ 709 (784)
Q Consensus 635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~~~V~sl~~spdg~~L-asgs-dd~I~IwDl~t~--~~i~ 709 (784)
+..+.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||...-+ +++. +|.|.|||+... .++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 8999999999888888889999999988 677888888888889999999976544 4444 449999999753 4555
Q ss_pred EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260 710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~ 747 (784)
+........+.+.|++.++.|++|...|++++|++...
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 66555566778888888999999999999999999643
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=163.58 Aligned_cols=260 Identities=17% Similarity=0.272 Sum_probs=190.1
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCe-EEEEEcc-------CCCEEEEEeCCCeEEEE
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV-TDVRFRP-------NSSQLATASVDKSVRLW 576 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I-t~i~fsp-------dg~~Latgs~Dg~I~IW 576 (784)
.|...|.|+.|+.+...+.+++ |..+.+|.--+......+.-....| +.+..-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3667788999998877666655 5555555433222222222111212 1111111 23578889999999998
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEeecCCeeEEEEecCCCEEEEEECCC
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHITKGGTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
+-.. .+.+....|.+.|.+-.|+|+|. -+++.++||.|++|.-... ..+......+.|++|.|+.+.++.+. .+
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 7542 35677789999999999999998 5567788999999987642 22334557899999999988776654 46
Q ss_pred cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260 655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
.+.|=.+.....+..++.|.+-|.++.|++...++++|++| ..+|||. -|..+..-..|+.+|++++|.|+ ..++++
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeee
Confidence 77787777777777889999999999999999999999999 9999995 46677777789999999999999 434443
Q ss_pred ECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 734 GGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 734 s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
+ ..++++= ....+.|..++||+||..+++|+..|.|.+
T Consensus 245 S-~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 S-YNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred e-eeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 3 3445521 234577999999999999999999988754
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.1e-14 Score=143.81 Aligned_cols=266 Identities=13% Similarity=0.174 Sum_probs=191.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDT----------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl 578 (784)
.|..-+|+|.+++|+.|..+|.|.|+.+++ ...+..+.+|.++|..++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 467778999999999999999999998863 22344557999999999998 44677765 599999987
Q ss_pred CCCcce---e----eeccCC-----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecC
Q 047260 579 ANPNFC---S----QAYTGH-----SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPR 643 (784)
Q Consensus 579 ~~~~~~---~----~~~~~h-----~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~ 643 (784)
+..... . ....-| --.|.++...|..+.+|.++ .|+.++.||+++++..+.++++ +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 643210 0 011112 23588999999888777666 6999999999999998888754 566666566
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEeCCC----------CCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc
Q 047260 644 IGQLLAAASDKVVSIFDIETDRQTHSLQGHA----------ELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS 713 (784)
Q Consensus 644 ~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~----------~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~ 713 (784)
...+++|+.||++++||+++++.+..+...+ ..|-+++ -+..++++|....+.+|.+++.++...|..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEec
Confidence 6789999999999999999999988875321 1344444 456688887777999999999988888765
Q ss_pred CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCC-CEEEEEECCCcEEEe
Q 047260 714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVT-GMVASASHDSSVKLW 783 (784)
Q Consensus 714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IW 783 (784)
. ..+..+.|..+ .+++++..+.|.-|.+..--...+.......+...|+... ++|-.++...++.|+
T Consensus 246 p-a~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 P-ARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred c-cceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4 66788888766 6788887778999987654333333333334444554332 344445556666654
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.6e-15 Score=169.27 Aligned_cols=231 Identities=13% Similarity=0.132 Sum_probs=166.1
Q ss_pred CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCC
Q 047260 528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPK 603 (784)
Q Consensus 528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~ 603 (784)
+..|.|||.+... ...+..|...|.+.+|+|||+.|+.++.+ ..|++||+.++.. .+..+.+ ....++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987544 45667788899999999999999988754 3699999987652 2222333 3457899999
Q ss_pred CCcEEEEEeCCCeEEE--EeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCC-eEEEEEeCCCCCE
Q 047260 604 KTDLFCFCDNDNEIQY--WSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETD-RQTHSLQGHAELV 677 (784)
Q Consensus 604 ~~~ll~sgs~dg~I~i--wDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~-~~i~~l~~h~~~V 677 (784)
+..++++.+.+|.+.+ ||+.+....... ...+....|+|++..|+.++. ++.+.||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 9978777777886555 466555443332 345677899999998877664 688888876432 222223 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC---CCCceEEecc
Q 047260 678 NYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM---AENKSMTIAA 754 (784)
Q Consensus 678 ~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl---~~~~~~~~~~ 754 (784)
.++.|+|||++|+..+.+.+.+||+.+++....... .....+.|+|++++|++++.++.+.+|++ .......+..
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 457899999999888777777899998875433222 23456789999999999999987776664 3444446778
Q ss_pred cCCceEEEEEeCC
Q 047260 755 HENIISALAQSPV 767 (784)
Q Consensus 755 h~~~V~slafspd 767 (784)
|.+.+..++|+|-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 8888999999984
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=5e-15 Score=151.48 Aligned_cols=223 Identities=17% Similarity=0.242 Sum_probs=174.0
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
+.--..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 344567899999999999999999999999998864 45778899999999999999999999999999999999984
Q ss_pred CCcc--eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------eEEeecCCeeEEEEecCCCEEEEE
Q 047260 580 NPNF--CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-------CTHITKGGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 580 ~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-------~~~~~~~~v~~v~fsp~~~~Ll~~ 650 (784)
.+.. ....+..+...++++.|+|.++ .|++|+....|.||-++... ....++..|.++.|+|++-.|++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4332 2334556888999999999976 78889888999888776432 234455788999999999999999
Q ss_pred ECCCcEEEEECCC------------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEE
Q 047260 651 ASDKVVSIFDIET------------------DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQE 710 (784)
Q Consensus 651 s~Dg~I~IwDl~t------------------~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~ 710 (784)
+.|+..+||..-- |..+..+....+.|..+.|+|+|..|+-.+.+ .|.+-|..... .+..
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9999999996421 12223333456789999999999999887765 89888877654 3444
Q ss_pred eccCCCceEEEEEecC
Q 047260 711 LSSNGNQFHSCVFHPS 726 (784)
Q Consensus 711 l~~~~~~I~sl~fspd 726 (784)
+....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 4333355666666544
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.67 E-value=2.4e-15 Score=157.09 Aligned_cols=202 Identities=15% Similarity=0.246 Sum_probs=160.8
Q ss_pred EeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCe
Q 047260 502 CIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRP-NSSQLATASVDKS 572 (784)
Q Consensus 502 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~ 572 (784)
.+.+|+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+| ..+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3578999999999999 6668999999999999998643 45677889999999999999 5578999999999
Q ss_pred EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEE
Q 047260 573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLL 648 (784)
Q Consensus 573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll 648 (784)
|.|||+.+++..+. +. |.+-|.++.|+.+|. ++++.+.|..|+|||.++++.+.... .....+.|-.++..+-
T Consensus 156 v~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT-LD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeee-cC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 99999999885444 33 999999999999988 88889999999999999988876653 2335567888888444
Q ss_pred EEEC---CCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCc
Q 047260 649 AAAS---DKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGE 706 (784)
Q Consensus 649 ~~s~---Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~ 706 (784)
+|.+ +..+-+||..+.+....+. .....|.---|++|..++..++ |+.|+-|.+....
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4433 7889999987653322222 2345566667889999888777 4499999998765
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.2e-14 Score=146.66 Aligned_cols=267 Identities=16% Similarity=0.252 Sum_probs=197.1
Q ss_pred CceEEEEEcC--C-CCEEEEEeC----CCeEEEEECC--CCceeeec-CCCCCCeEEEEEccCC-----CEEEEEeCCCe
Q 047260 508 SKVTCCHFSS--D-GKLLASSGH----DRKVVLWNMD--TLQTESTP-EDHKSVVTDVRFRPNS-----SQLATASVDKS 572 (784)
Q Consensus 508 ~~V~~l~fsp--d-g~~Lasgs~----Dg~I~IWd~~--t~~~~~~l-~~h~~~It~i~fspdg-----~~Latgs~Dg~ 572 (784)
-.+.++.|+. + ..+||.|+. .++|.|..++ +++.+..- ..|..+++.+-|.|+. .+|||++ -.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3578888884 3 347888863 4566666554 44443322 3699999999999976 3466654 37
Q ss_pred EEEEcCCCCc--cee------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------eeEEeecCCeeEE
Q 047260 573 VRLWDAANPN--FCS------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF------LCTHITKGGTAQV 638 (784)
Q Consensus 573 I~IWdl~~~~--~~~------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~------~~~~~~~~~v~~v 638 (784)
+|+|.+.... ... .....+..+++++.|+.-...++.+++-|-++.|||++++ ..+..+...|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 9999987422 111 1123567899999999999999999999999999999874 3345567899999
Q ss_pred EEecCCC-EEEEEECCCcEEEEECCCCeEEEEEeC---CCCCEEEEEEcC-CCCEEEEEeCC--eEEEEeCCCC-ceEEE
Q 047260 639 RFQPRIG-QLLAAASDKVVSIFDIETDRQTHSLQG---HAELVNYICWDT-NGDYLASVSQN--LVKVWSMASG-ECIQE 710 (784)
Q Consensus 639 ~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~i~~l~~---h~~~V~sl~~sp-dg~~Lasgsdd--~I~IwDl~t~-~~i~~ 710 (784)
+|...+. .+++++.||.|++||++..+.-..+.. ...+...++|++ |-+|+++...+ .|.|.|++.. .++.+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9998654 567778899999999998654333322 256788899987 55677776644 8999999974 68899
Q ss_pred eccCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCce------EEecccCCceEEEEEeCC-CCEEEEEEC
Q 047260 711 LSSNGNQFHSCVFHPSY-STLLVVGGISSLELWNMAENKS------MTIAAHENIISALAQSPV-TGMVASASH 776 (784)
Q Consensus 711 l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~------~~~~~h~~~V~slafspd-g~~LaSgs~ 776 (784)
+.+|.+.|+.++|.|.. ..|++++.|..+.|||+..--. +-...-.+.|+.+.|++. ...|+.+..
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 99999999999999976 5688888899999999976432 122236678999999964 456766643
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.6e-15 Score=154.28 Aligned_cols=287 Identities=15% Similarity=0.167 Sum_probs=215.9
Q ss_pred CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEe-ecCCCceEEE
Q 047260 435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCI-RSRNSKVTCC 513 (784)
Q Consensus 435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l-~~H~~~V~~l 513 (784)
.++..++.++.|..+ +++++.|..|..+++|.+...--.+. .+.|... ..|.+.|.|+
T Consensus 53 ~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~--------------------~KPI~~~~~~H~SNIF~L 111 (609)
T KOG4227|consen 53 REHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKT--------------------PKPIGVMEHPHRSNIFSL 111 (609)
T ss_pred hhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcC--------------------CCCceeccCccccceEEE
Confidence 356678888888776 88888999999999997643321100 0122222 2366899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC---CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eec
Q 047260 514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK---SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAY 588 (784)
Q Consensus 514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~---~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~ 588 (784)
+|....++|++|+.+++|.+.|+++.+.+..+. |. +.|..+..+|..+.|++.+.+|.|.+||++...... ...
T Consensus 112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred EEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999999988887774 44 489999999998999999999999999998644222 222
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-------EeecC---CeeEEEEecCCCEEEEEECCCcEEE
Q 047260 589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-------HITKG---GTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-------~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
.........+.|+|..+.+|++.+..+-+.+||++..... ..+.. .-..+.|+|.|+.+++.-....-.+
T Consensus 191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 2344667889999999999999999999999999842211 11111 2256789999999998887777788
Q ss_pred EECCCCeEE-EEEeCCC-------CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC----------C-------------c
Q 047260 659 FDIETDRQT-HSLQGHA-------ELVNYICWDTNGDYLASVSQN-LVKVWSMAS----------G-------------E 706 (784)
Q Consensus 659 wDl~t~~~i-~~l~~h~-------~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t----------~-------------~ 706 (784)
||+-..++. ..+. |. ..+.+++|..|- -+++|+|+ .|++|.+.. | +
T Consensus 271 ~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 898775443 3332 32 246677786544 48899998 999998742 1 1
Q ss_pred eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 707 CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 707 ~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
.+..+++|...++.+.|+|...+|++.+-.+.++||.-.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 245678899999999999999999999999999999643
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=4.2e-15 Score=163.07 Aligned_cols=270 Identities=16% Similarity=0.235 Sum_probs=203.6
Q ss_pred cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260 440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG 519 (784)
Q Consensus 440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg 519 (784)
.+-.+.|.+|+..++.+ .++.+.+|+.++++ .+.++++|.+.|.|++|+.||
T Consensus 14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~--------------------------llqtLKgHKDtVycVAys~dG 65 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGT--------------------------LLQPLKGHKDTVYCVAYAKDG 65 (1081)
T ss_pred chheeEECCCCceEEEe--cCCEEEEEeCCCcc--------------------------cccccccccceEEEEEEccCC
Confidence 34455666776666642 34667777776554 456789999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~ 599 (784)
+.+|+|+.|..|.||+..-.-. ..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..+...... ......|.+++
T Consensus 66 krFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~Cs 139 (1081)
T KOG1538|consen 66 KRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCS 139 (1081)
T ss_pred ceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEee
Confidence 9999999999999998763222 223 699999999999988899998764 57889887644211 12346788999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCCC-----EEEEEECCCcEEEEECCCCeEEEE
Q 047260 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIG-----QLLAAASDKVVSIFDIETDRQTHS 669 (784)
Q Consensus 600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~-----~Ll~~s~Dg~I~IwDl~t~~~i~~ 669 (784)
|..||. +++.|-.+|+|.+-+-.......+- ..+|.+++|+|..+ .+++.....++.+|.+. |+.+..
T Consensus 140 WtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk 217 (1081)
T KOG1538|consen 140 WTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGK 217 (1081)
T ss_pred ecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecc
Confidence 999987 7778889999999876654444333 36789999998653 46666667777777765 333332
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 670 LQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 670 l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
-+.-.-.-.|+.+.++|+|+..|+.+ .+.+|. +.|..+.++......|+.+...|++.+++.|..||+|..|++..
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 22233345788899999998887755 777775 66778888877889999999999999999999999999998743
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=154.61 Aligned_cols=268 Identities=15% Similarity=0.201 Sum_probs=189.8
Q ss_pred CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC--CCCEEEEEeCC
Q 047260 451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS--DGKLLASSGHD 528 (784)
Q Consensus 451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp--dg~~Lasgs~D 528 (784)
+..++++-..+.|++|+...+ ..+..+++|...++.+.|.. ....+.+|+.|
T Consensus 40 e~~vav~lSngsv~lyd~~tg--------------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD 93 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTG--------------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSD 93 (376)
T ss_pred ceeEEEEecCCeEEEEeccch--------------------------hhhheecCCCCcccceEEecCCCCCeeEEeccC
Confidence 345667777888888866332 23455677888888888877 45689999999
Q ss_pred CeEEEEECCCCceeeec--CCCC-CCeEEEEEccCCCEEEEEeC----CCeEEEEcCCCCcc-eeeeccCCCCCeEEEEE
Q 047260 529 RKVVLWNMDTLQTESTP--EDHK-SVVTDVRFRPNSSQLATASV----DKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF 600 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l--~~h~-~~It~i~fspdg~~Latgs~----Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~ 600 (784)
|+|++||+++......+ ..+. .+..|++.+-++..+++|.. |-.|.+||++.... +......|.+.|+++.|
T Consensus 94 G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 94 GTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred CeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 99999999876554443 3454 45677777767788888754 67899999998776 44455689999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCee------EEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeCC
Q 047260 601 HPKKTDLFCFCDNDNEIQYWSINPFLC------THITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQGH 673 (784)
Q Consensus 601 sp~~~~ll~sgs~dg~I~iwDl~~~~~------~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h 673 (784)
+|..+.++++|+.||.|.+||++.... +..+...|.++.|..++ +.|.+-+...+..+|+++.+.+...+...
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence 999999999999999999999975322 12223567888898775 56888889999999999988765544321
Q ss_pred C-------------CCEEEEEEcCCCCEEEEEe--CCeEEEEeC---CCC---ceEEEecc-CCCceEEEEEecCCCEEE
Q 047260 674 A-------------ELVNYICWDTNGDYLASVS--QNLVKVWSM---ASG---ECIQELSS-NGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 674 ~-------------~~V~sl~~spdg~~Lasgs--dd~I~IwDl---~t~---~~i~~l~~-~~~~I~sl~fspdg~~L~ 731 (784)
. .-|.+. ...+...++.++ .+...++-+ .++ ..+..+.+ |...|+++.|...+..++
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceee
Confidence 1 011111 112333444433 234444433 333 34445555 556788899998899999
Q ss_pred EEECCCeEEEEECC
Q 047260 732 VVGGISSLELWNMA 745 (784)
Q Consensus 732 s~s~dg~I~Iwdl~ 745 (784)
+|+.||.|.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999863
No 195
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.4e-13 Score=152.20 Aligned_cols=285 Identities=15% Similarity=0.149 Sum_probs=187.6
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLW 576 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IW 576 (784)
..+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.+.|+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 3455555544444557899999999999999999999999999999986544 467899999999998776 58999999
Q ss_pred cCCCCcceeeecc------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--Eee--cCCeeEEEEecCCCE
Q 047260 577 DAANPNFCSQAYT------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT--HIT--KGGTAQVRFQPRIGQ 646 (784)
Q Consensus 577 dl~~~~~~~~~~~------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~--~~~v~~v~fsp~~~~ 646 (784)
|.++.+.....-. .....+..|..++....++++--+.+.|.+.|....... ... ........|+|++++
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 9998763332211 134567888888888867776677799999997754322 222 245678899999999
Q ss_pred EEEEEC-CCcEEEEECCCCeEEEEEeC----CCCCEEEEE-------Ec--CCCCEE-EEEeCCeEEEEeCCCCceEEEe
Q 047260 647 LLAAAS-DKVVSIFDIETDRQTHSLQG----HAELVNYIC-------WD--TNGDYL-ASVSQNLVKVWSMASGECIQEL 711 (784)
Q Consensus 647 Ll~~s~-Dg~I~IwDl~t~~~i~~l~~----h~~~V~sl~-------~s--pdg~~L-asgsdd~I~IwDl~t~~~i~~l 711 (784)
++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+... ...+.+.+.+||..+.+.+.++
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 888765 78999999999988776642 333443321 22 122222 3344556778999999999999
Q ss_pred ccCCCceEEEEEecCCCEEEEE---EC-CCeEEEEECCCCceEEecc--cCCceEEEEEeCCCCEEEEEECCC--cEEEe
Q 047260 712 SSNGNQFHSCVFHPSYSTLLVV---GG-ISSLELWNMAENKSMTIAA--HENIISALAQSPVTGMVASASHDS--SVKLW 783 (784)
Q Consensus 712 ~~~~~~I~sl~fspdg~~L~s~---s~-dg~I~Iwdl~~~~~~~~~~--h~~~V~slafspdg~~LaSgs~DG--~V~IW 783 (784)
...... ..+..+|+++++++. +. .+.|.++|..+.+...... ....+..+.|++||+.+..+..|+ .|.||
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 987777 888899999999998 33 3799999999987663332 223599999999999766655443 59888
Q ss_pred C
Q 047260 784 K 784 (784)
Q Consensus 784 d 784 (784)
|
T Consensus 345 D 345 (369)
T PF02239_consen 345 D 345 (369)
T ss_dssp E
T ss_pred E
Confidence 6
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.7e-15 Score=163.40 Aligned_cols=211 Identities=18% Similarity=0.308 Sum_probs=163.1
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec-CCCCCCeEEEEEcc--CCCEEEEEeCCCeEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP-EDHKSVVTDVRFRP--NSSQLATASVDKSVR 574 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~It~i~fsp--dg~~Latgs~Dg~I~ 574 (784)
.....|.||++.|+|++|+.||.+|++|++|-.|.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 344668899999999999999999999999999999999888877766 58999999999999 667899999999999
Q ss_pred EEcCCC---------CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEee------------c
Q 047260 575 LWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTHIT------------K 632 (784)
Q Consensus 575 IWdl~~---------~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~~~------------~ 632 (784)
++|+.. .+.....+..|...|..|+..|++++.|.++++||+|+-+|++... |.... .
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 2234555678999999999999999999999999999999998521 11111 0
Q ss_pred CCeeEEEEecCCC-EEEEEECCCcEEEEECCCC--------e----------EEEEEe-CCC-----------CCEEEEE
Q 047260 633 GGTAQVRFQPRIG-QLLAAASDKVVSIFDIETD--------R----------QTHSLQ-GHA-----------ELVNYIC 681 (784)
Q Consensus 633 ~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~--------~----------~i~~l~-~h~-----------~~V~sl~ 681 (784)
-...++.++|... +|++|+.|-..++||.+.. . ++..+. +|. ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 3456788998765 5677788999999995321 1 122221 121 1256678
Q ss_pred EcCCCCEEEEEe-CCeEEEEeCCCCceE
Q 047260 682 WDTNGDYLASVS-QNLVKVWSMASGECI 708 (784)
Q Consensus 682 ~spdg~~Lasgs-dd~I~IwDl~t~~~i 708 (784)
|+|+|.-|.+.- .+.|+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999997665554 459999999876543
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.1e-14 Score=144.49 Aligned_cols=272 Identities=15% Similarity=0.250 Sum_probs=186.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
+-.+..++|++.-..+|++..|-.|+|||-.. +....++ .....|+|++|-| .++.|+.|+.. -|.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 44578899999767789999999999999876 4444443 3446899999999 45677777764 5999987642211
Q ss_pred e-------------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEE
Q 047260 585 S-------------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLL 648 (784)
Q Consensus 585 ~-------------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll 648 (784)
. ....+| .+|+++.|++|+..++-++-.+..|.|||.+++.++... .+.++-+.|+|++.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1 112344 689999999999866655667889999999988776554 26788899999999999
Q ss_pred EEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC----Cc-----------eEEEec
Q 047260 649 AAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS----GE-----------CIQELS 712 (784)
Q Consensus 649 ~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t----~~-----------~i~~l~ 712 (784)
++.-|+..++|..... ...+-. ...+.|...+|+|+|++|.....+.-+||.+.- .. .+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999955433 333222 244599999999999988877766555555421 10 011111
Q ss_pred -----cC----CCceEEEEEecCCCEEEEEECCC--------eEEEEECCCCceEEec--c--cCCceEEEEEeC---CC
Q 047260 713 -----SN----GNQFHSCVFHPSYSTLLVVGGIS--------SLELWNMAENKSMTIA--A--HENIISALAQSP---VT 768 (784)
Q Consensus 713 -----~~----~~~I~sl~fspdg~~L~s~s~dg--------~I~Iwdl~~~~~~~~~--~--h~~~V~slafsp---dg 768 (784)
.. .+.+.+++|.|.|.++++.-..+ .|.+||......+.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 11 46788999999999999987653 3677887765554332 1 111234455554 34
Q ss_pred CEEEEEECCCcEEE
Q 047260 769 GMVASASHDSSVKL 782 (784)
Q Consensus 769 ~~LaSgs~DG~V~I 782 (784)
.+|..+=..|.+.-
T Consensus 414 ~lLsiaWsTGriq~ 427 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQR 427 (445)
T ss_pred cEEEEEeccCceEe
Confidence 45555555565543
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4.9e-13 Score=137.08 Aligned_cols=266 Identities=17% Similarity=0.250 Sum_probs=180.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CC------CeEEEEcCCCC
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VD------KSVRLWDAANP 581 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~D------g~I~IWdl~~~ 581 (784)
...+++|+.|...+++|.++| .+||+.+..+....-..+.+.+.-+..--..++|+..+ .+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 355599999999999998887 99999987555443333333322222222345555433 32 4799999333
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEeec-----CCeeEEEEecCCCEEEEEEC-CC
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCTHITK-----GGTAQVRFQPRIGQLLAAAS-DK 654 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~-Dg 654 (784)
+.++..+ ....+|.+|.+.++. +++.- .+.|+||... ..+.++.++ .+.++++-......|+.-+. -|
T Consensus 85 ~~~i~el-~f~~~I~~V~l~r~r---iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIEL-SFNSEIKAVKLRRDR---IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEE-EeccceeeEEEcCCe---EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 3244433 356889999998763 33332 7899999887 444444433 22333332223333443333 59
Q ss_pred cEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccC--CCceEEEEEecCCC
Q 047260 655 VVSIFDIETDRQ--THSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYS 728 (784)
Q Consensus 655 ~I~IwDl~t~~~--i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~ 728 (784)
.|.|.|+...+. ...+..|...|.|++++-+|..+|+++.. -|||||..+|+.+.++... ...|.+++|+|+..
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999987655 47788999999999999999999999955 8999999999999999743 46799999999999
Q ss_pred EEEEEECCCeEEEEECCCCc---e-----------E-E----------ecccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260 729 TLLVVGGISSLELWNMAENK---S-----------M-T----------IAAHENIISALAQSPVTGMVASASHDSSVK 781 (784)
Q Consensus 729 ~L~s~s~dg~I~Iwdl~~~~---~-----------~-~----------~~~h~~~V~slafspdg~~LaSgs~DG~V~ 781 (784)
+|+++++.|+|+||.+.... . + . +.-..+....++|..+.+.++..+.||.-+
T Consensus 240 ~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 99999999999999886532 1 0 0 111233455566776656666666777643
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.2e-13 Score=154.47 Aligned_cols=232 Identities=12% Similarity=0.120 Sum_probs=168.5
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~ 605 (784)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+......+..+.|+|++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 3699999875543 344457778999999999999987653 35799999987652 22222334455789999999
Q ss_pred cEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEeCCCCCEE
Q 047260 606 DLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-K--VVSIFDIETDRQTHSLQGHAELVN 678 (784)
Q Consensus 606 ~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-g--~I~IwDl~t~~~i~~l~~h~~~V~ 678 (784)
.++++.+.+| .|++||+++........ ..+....|+|+++.|+.++.+ + .|+++|+.+++.. .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766555 58999998776555443 356778999999998877764 4 4555577766443 3333444566
Q ss_pred EEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEE
Q 047260 679 YICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMT 751 (784)
Q Consensus 679 sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~ 751 (784)
..+|+|||++|+..+. + .|.+||+.+++.. .+... .......|+|||++|+.++.++ .+.++++.......
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~ 412 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 412 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE
Confidence 7899999999887652 2 6899999888643 34322 2335678999999999999876 47888987777777
Q ss_pred ecccCCceEEEEEeC
Q 047260 752 IAAHENIISALAQSP 766 (784)
Q Consensus 752 ~~~h~~~V~slafsp 766 (784)
+..|.+.+...+|+|
T Consensus 413 l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 413 LPATDGQVKFPAWSP 427 (429)
T ss_pred CccCCCCcCCcccCC
Confidence 888889999999987
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.9e-13 Score=142.48 Aligned_cols=228 Identities=14% Similarity=0.242 Sum_probs=174.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCe
Q 047260 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFL 626 (784)
Q Consensus 549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~ 626 (784)
...+..+.|+.+...|..|+.|| .++|..+....+.... .....|..+-|+.. +++..+.+ ..+++++++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34677788999999999999988 6788877644322211 22334566666643 55544433 458999988654
Q ss_pred e--EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 047260 627 C--THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG---HAELVNYICWDTNGDYLASVS---QNLVK 698 (784)
Q Consensus 627 ~--~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~---h~~~V~sl~~spdg~~Lasgs---dd~I~ 698 (784)
. ...+...|.+|.++. ++|+++-.+. |+|||+++.+.++++.. +...+.++.+++.+.||+.-+ .+.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 4 455567788888865 4566665544 99999999999998864 344566666666777888754 34999
Q ss_pred EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCe-EEEEECCCCceE-Eecc--cCCceEEEEEeCCCCEEEEE
Q 047260 699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS-LELWNMAENKSM-TIAA--HENIISALAQSPVTGMVASA 774 (784)
Q Consensus 699 IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~-I~Iwdl~~~~~~-~~~~--h~~~V~slafspdg~~LaSg 774 (784)
|||+.+-+.+..+..|.+.+-+++|+++|.+|++++..|+ |+||.+.++..+ .+.. -...|.+|+|++++.+|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999995 899999999887 3332 24568999999999999999
Q ss_pred ECCCcEEEeC
Q 047260 775 SHDSSVKLWK 784 (784)
Q Consensus 775 s~DG~V~IWd 784 (784)
|..++|.||+
T Consensus 237 S~TeTVHiFK 246 (391)
T KOG2110|consen 237 SNTETVHIFK 246 (391)
T ss_pred cCCCeEEEEE
Confidence 9999999985
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.2e-14 Score=161.46 Aligned_cols=217 Identities=17% Similarity=0.190 Sum_probs=156.9
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCce--eeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEE
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVR 574 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~--~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~ 574 (784)
..+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3455688889999999999999887654 3699999988754 3333333 44789999999888765 688766
Q ss_pred EE--cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CeeEEeecCCeeEEEEecCCCEEEEE
Q 047260 575 LW--DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--FLCTHITKGGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 575 IW--dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~~~~~~~~~~v~~v~fsp~~~~Ll~~ 650 (784)
|| |+.++. ...+..+...+.++.|+|++..++++++.++...+|+++. .......... ....|+|+++.|+++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMI 350 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEE
Confidence 65 555543 3445566777889999999998888877788888887643 2222211112 457899999999888
Q ss_pred ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeC--CCCceEEEeccCCCceEEEEEecC
Q 047260 651 ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSM--ASGECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 651 s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl--~t~~~i~~l~~~~~~I~sl~fspd 726 (784)
+.++ +.+||+.+++.......+ ....+.|+|+|++|+.++. +.+.+|++ .++..+..+..+.+.+..++|+|-
T Consensus 351 ~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 7754 666999988654332222 3356789999999998874 46666665 467888889888888899999985
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.4e-14 Score=153.34 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=151.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec-c
Q 047260 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY-T 589 (784)
Q Consensus 511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~-~ 589 (784)
.+++|+.+|..|++|+.||++|||++.+...+.....|...|.++.|+|||++|++.+.| ..+||+++++....... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888999999999999999999999999 89999999875322222 2
Q ss_pred CCCCCeEEEEEcCCC---Cc-EEEEEeCCCeEEEEeCCCCee--------EEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260 590 GHSSPIMSLDFHPKK---TD-LFCFCDNDNEIQYWSINPFLC--------THITKGGTAQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 590 ~h~~~V~sl~~sp~~---~~-ll~sgs~dg~I~iwDl~~~~~--------~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
+.+..+..+.|..++ .. +++.-...+.|+.||+..... .......+++++++.+|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334456677777665 22 233334456677776643211 111125789999999999999999999999
Q ss_pred EEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 047260 658 IFDIETDRQTHSLQ-GHAELVNYICWDTNGDYLASVSQN-LVKVWSMA 703 (784)
Q Consensus 658 IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~ 703 (784)
|++..+.+.++.++ .|...|+.+.|+|+.+++++.+.+ .+.|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999988877765 599999999999999999987755 66666553
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8.5e-14 Score=151.48 Aligned_cols=273 Identities=15% Similarity=0.179 Sum_probs=201.7
Q ss_pred cCCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260 505 SRNSKVTCCHFSSDGKLL-ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF 583 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~ 583 (784)
+|...-+.|..+|||.|+ |||...-.|+|||+....+...-.-....|.-.-++.|-..++.-..|.+|-+..--....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 477888999999999975 6777888999999987655433222234555555565666666667788887765432111
Q ss_pred eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD 660 (784)
.. .-......++++.-...+++.|+ ...|+-++++.+..+..+. +.+.+|.+++....|++|+.+|.|..||
T Consensus 129 ~~----RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RT----RIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred ee----ecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 11 11233456677665555666554 6778888999887776665 6789999999999999999999999999
Q ss_pred CCCCeEEEEEeC------CCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEec-cCCCceEEEEEecCC
Q 047260 661 IETDRQTHSLQG------HAE-----LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELS-SNGNQFHSCVFHPSY 727 (784)
Q Consensus 661 l~t~~~i~~l~~------h~~-----~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg 727 (784)
.+....+..+.. |.+ .|+++.|+.+|-.+++|. +|.|.|||+++.+++..-. ...-+|..+.|.+.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 998776665542 222 499999999999999987 5599999999988765443 345678899997764
Q ss_pred CEEEEEECC-CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 728 STLLVVGGI-SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 728 ~~L~s~s~d-g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
..-.+.+.| ..++|||-.+++..........++.+|+-|++.+++++-.++.+..
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred CCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 333333334 5899999999999988877788999999999999999988876643
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=141.35 Aligned_cols=268 Identities=16% Similarity=0.268 Sum_probs=194.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccC
Q 047260 512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTG 590 (784)
Q Consensus 512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~ 590 (784)
-++|||+|+++|+++.. .+.|-|.++.+....+. .-..|.-|.|..|..+++++ ..|+.|.+|++...+...+ +..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck-Ide 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK-IDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE-ecc
Confidence 46899999999998866 79999999877766553 24567889999888777665 5678999999998875444 444
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEEC-C--------------
Q 047260 591 HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAAS-D-------------- 653 (784)
Q Consensus 591 h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~-D-------------- 653 (784)
....+.+++|+|+|+.++.+...+-.|.+|.+.+.++... .+..+..++|+|+|.+.+.++. |
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 5678999999999999999999999999999998666543 3466678889999887766553 2
Q ss_pred ---------------------CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEE--
Q 047260 654 ---------------------KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQ-- 709 (784)
Q Consensus 654 ---------------------g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~-- 709 (784)
..+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.| .++|.+--+.+.+.
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123333322111111111 23468889999999999999965 77765432211110
Q ss_pred ----------------------------------------------------------Eec------cCCCceEEEEEec
Q 047260 710 ----------------------------------------------------------ELS------SNGNQFHSCVFHP 725 (784)
Q Consensus 710 ----------------------------------------------------------~l~------~~~~~I~sl~fsp 725 (784)
.++ .....+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 000 0112356789999
Q ss_pred CCCEEEEEECC--CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 726 SYSTLLVVGGI--SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 726 dg~~L~s~s~d--g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
|..++++-.+. ..+-+||+...+...+.....+|.+..|+|....|+.+....++++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99888777654 57999999998887777778899999999998888888777778888
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=3.5e-15 Score=167.63 Aligned_cols=266 Identities=18% Similarity=0.271 Sum_probs=200.0
Q ss_pred CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260 450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR 529 (784)
Q Consensus 450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg 529 (784)
..+.+.+|+.|.-|++|...+. .++...+||.+.|+.++.+.+..++|+++.|.
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~--------------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETA--------------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDK 254 (1113)
T ss_pred ccceEeecCccceeeeeeccch--------------------------hhhccCCCCccccchhccchhhhhhhhcccCc
Confidence 4445557999999999964322 23456789999999999999999999999999
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC-CCcc-eeeecc-CCCCCeEEEEEcCCCCc
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA-NPNF-CSQAYT-GHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~-~~~~-~~~~~~-~h~~~V~sl~~sp~~~~ 606 (784)
.|++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+ .... ...... .....+.++.|...+.
T Consensus 255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~- 329 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD- 329 (1113)
T ss_pred eEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-
Confidence 99999999999999999999999999999954 77899999999988 2110 111111 1224455666665554
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260 607 LFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN 685 (784)
Q Consensus 607 ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd 685 (784)
-+.+++.|+.-..|.+....+.... +.-+.++.+. .+.+++-.+-.+++|++.++...+.+.+|...+..+.++|-
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred ccccccCCcccccchhhHhhhhccc---eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 6778899998888876532211110 0111111111 34555666888999999999999999999999999999996
Q ss_pred CCEEE-EEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260 686 GDYLA-SVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS 749 (784)
Q Consensus 686 g~~La-sgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~ 749 (784)
+..++ +++ |+.+.|||+-.|.+++.+......+...+|+++|..++....-|.++|.....++.
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 66554 344 66999999999988887766678889999999999998888889999987765543
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.58 E-value=1e-13 Score=151.59 Aligned_cols=231 Identities=19% Similarity=0.315 Sum_probs=162.0
Q ss_pred EcCCCCEEEE--EeCCCeEEEEECCC-Cceeee-cC--CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcc----
Q 047260 515 FSSDGKLLAS--SGHDRKVVLWNMDT-LQTEST-PE--DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNF---- 583 (784)
Q Consensus 515 fspdg~~Las--gs~Dg~I~IWd~~t-~~~~~~-l~--~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~---- 583 (784)
|+.+.+++|+ ++..|.|-||++.. |++... +. .....|+++.|.| |...|+++++||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 3445556654 56679999999974 222111 11 2456799999999 888999999999999999976542
Q ss_pred --eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260 584 --CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI 661 (784)
Q Consensus 584 --~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl 661 (784)
....+..|...|+++.|+|-.. +.|++++.|-+|++||+
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAa---------------------------------------dvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAA---------------------------------------DVLAVASYDSTIELWDL 707 (1012)
T ss_pred CCcceeeecccceEEEEEecchhh---------------------------------------hHhhhhhccceeeeeeh
Confidence 3455667777788888777433 34566677888888888
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccC-CCceEEEEEecCCCEEEEEECCC-
Q 047260 662 ETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSN-GNQFHSCVFHPSYSTLLVVGGIS- 737 (784)
Q Consensus 662 ~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg- 737 (784)
.+.+....+.+|.+.|..++|+|+|+.+++.+.| +|+||+.++++ .+.+-.+. +..--.+.|.-+|+++++.+-|.
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 8888888999999999999999999999998855 99999998864 45444332 23345778999999999998874
Q ss_pred ---eEEEEECCCCce--EEec--ccCCceEEEEEeCCCC-EEEEEECCCcEEEeC
Q 047260 738 ---SLELWNMAENKS--MTIA--AHENIISALAQSPVTG-MVASASHDSSVKLWK 784 (784)
Q Consensus 738 ---~I~Iwdl~~~~~--~~~~--~h~~~V~slafspdg~-~LaSgs~DG~V~IWd 784 (784)
.|.+||..+-.. +... ...-.+.--.+.+|.+ +|++|-.|..|.+|+
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 588888765431 1111 1111111223445554 566777788888764
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.6e-13 Score=152.24 Aligned_cols=232 Identities=15% Similarity=0.138 Sum_probs=167.6
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~ 605 (784)
..|.+||... .....+..+...+.+.+|+||++.|+.++.+ ..|.+||+.++.. ..+..+.+...++.|+|++.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 4689999864 4445566677889999999999999988754 4699999987652 22333445566889999999
Q ss_pred cEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCc--EEEEECCCCeEEEEEeCCCCCEE
Q 047260 606 DLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKV--VSIFDIETDRQTHSLQGHAELVN 678 (784)
Q Consensus 606 ~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~--I~IwDl~t~~~i~~l~~h~~~V~ 678 (784)
.++++.+.+| .|++||+.+........ ......+|+|+++.|+.++. ++. |+++|+.+++... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887776665 59999998776544333 23467899999999888775 444 7777877765433 222334455
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEE
Q 047260 679 YICWDTNGDYLASVS-Q-N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMT 751 (784)
Q Consensus 679 sl~~spdg~~Lasgs-d-d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~ 751 (784)
.++|+|+|++|+..+ + + .|.+||+.+++.. .+.. ........|+|++++|+..+.+ +.|.++++..+....
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 789999999988765 2 2 6999999887654 3432 2244567999999998887764 368888997766666
Q ss_pred ecccCCceEEEEEeC
Q 047260 752 IAAHENIISALAQSP 766 (784)
Q Consensus 752 ~~~h~~~V~slafsp 766 (784)
+..+.+.+...+|+|
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 666777788888886
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=7.1e-15 Score=156.46 Aligned_cols=261 Identities=16% Similarity=0.226 Sum_probs=208.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY 588 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~ 588 (784)
.-..+.++.+|++|+.|+..|.|..+|+.+.++...+. -...|.++.|..+..+||++ ....+.|||-... .+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeeh
Confidence 46778999999999999999999999999999888874 45679999999888877776 4578999997642 34444
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260 589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR 665 (784)
Q Consensus 589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~ 665 (784)
..| ..|..+.|.|.. ++|++++..|.++.-|+..++.+..+. +.+..++-+|....+-+|...|+|.+|.....+
T Consensus 207 k~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 444 568999999985 588999999999999999988776554 677788889999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE-
Q 047260 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN- 743 (784)
Q Consensus 666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd- 743 (784)
++..+..|.++|.+|++.++|.|+++.+-| .|+|||++....+.++.. ......+++|..| +++++....|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 999999999999999999999999998855 999999999887777765 3556777887665 55555556899994
Q ss_pred CCCC--c-eEEeccc--CCceEEEEEeCCCCEEEEEECCC
Q 047260 744 MAEN--K-SMTIAAH--ENIISALAQSPVTGMVASASHDS 778 (784)
Q Consensus 744 l~~~--~-~~~~~~h--~~~V~slafspdg~~LaSgs~DG 778 (784)
.-.+ . ...+..| .+.|..+.|+|-..+|-.|-.-|
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 2221 1 1122233 45899999999776666554433
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.7e-13 Score=157.61 Aligned_cols=242 Identities=14% Similarity=0.217 Sum_probs=175.9
Q ss_pred CCCceEEEEEcC--CCCEEEEEeCCCeEEEEECC-C----CceeeecCC-------CCCCeEEEEEccCCCEEEEEeCCC
Q 047260 506 RNSKVTCCHFSS--DGKLLASSGHDRKVVLWNMD-T----LQTESTPED-------HKSVVTDVRFRPNSSQLATASVDK 571 (784)
Q Consensus 506 H~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWd~~-t----~~~~~~l~~-------h~~~It~i~fspdg~~Latgs~Dg 571 (784)
....|+.+.+-. |..+|++|+.||.|+||+-. + .+.+..+.+ ..+.=.-+.|.....+|++++.-.
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence 345688888866 55689999999999999743 2 223322211 111114467877666777777789
Q ss_pred eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------eEEeecC--CeeEEEEecC
Q 047260 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CTHITKG--GTAQVRFQPR 643 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------~~~~~~~--~v~~v~fsp~ 643 (784)
.|+|||+.....+...-.+....|+++.-+-.+..++++|..||.|++||.+... ..+.+.. +|..+.+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 9999999987766555556677788888776666799999999999999997421 2233333 3788888886
Q ss_pred CC-EEEEEECCCcEEEEECCCCeEE--EEEeCCC--C-CEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc----
Q 047260 644 IG-QLLAAASDKVVSIFDIETDRQT--HSLQGHA--E-LVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS---- 713 (784)
Q Consensus 644 ~~-~Ll~~s~Dg~I~IwDl~t~~~i--~~l~~h~--~-~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~---- 713 (784)
|- .|++|+.+|.|++||++..... ..+..|. + .++++..+++..++++|+...|+||++... .+..++.
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~-~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE-QLNIIKYNPGF 1346 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChh-hhcccccCccc
Confidence 64 5999999999999999984222 2223333 3 599999999999999999999999998643 3333322
Q ss_pred ---CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260 714 ---NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748 (784)
Q Consensus 714 ---~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~ 748 (784)
....+.|++|||..-.+++|+.|..|.||......
T Consensus 1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 23457999999999999999999999999876543
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-12 Score=149.54 Aligned_cols=232 Identities=15% Similarity=0.179 Sum_probs=167.8
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~ 605 (784)
..|.+||.+. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+..|+|++.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788999864 444566678889999999999999988764 46899999987652 33445566778899999999
Q ss_pred cEEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEE
Q 047260 606 DLFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVN 678 (784)
Q Consensus 606 ~ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~ 678 (784)
.++++.+.++. |++||+.+........ .......|+|+++.|+..+. + ..|+++|+..++.. .+..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 88888776665 7778988766554433 33566899999999887775 3 36888898766543 3333455667
Q ss_pred EEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC------CeEEEEECCCCc
Q 047260 679 YICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI------SSLELWNMAENK 748 (784)
Q Consensus 679 sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d------g~I~Iwdl~~~~ 748 (784)
...|+|+|++|+.... + .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+..+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 7899999999987652 2 78899986554 333432 2346788999999998876653 258888987776
Q ss_pred eEEecccCCceEEEEEeCC
Q 047260 749 SMTIAAHENIISALAQSPV 767 (784)
Q Consensus 749 ~~~~~~h~~~V~slafspd 767 (784)
...+. ..+.+...+|+|-
T Consensus 416 ~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 416 EREVP-TPGDASDPAWSPL 433 (435)
T ss_pred eEEcc-CCCCccCcccCCC
Confidence 65444 3555777788763
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=3.6e-14 Score=152.94 Aligned_cols=226 Identities=15% Similarity=0.176 Sum_probs=173.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe-EEEEEcC------CCCcEEEEEeCCCeEEE
Q 047260 547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI-MSLDFHP------KKTDLFCFCDNDNEIQY 619 (784)
Q Consensus 547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V-~sl~~sp------~~~~ll~sgs~dg~I~i 619 (784)
.|...|.|+.|+.+...+++++++-.++-||+.+........ ....| +.+..-+ .+...|+.|+.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 567778899999877766666555555555665433211111 11111 1111111 23457888899999998
Q ss_pred EeCCC--CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260 620 WSINP--FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLV 697 (784)
Q Consensus 620 wDl~~--~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I 697 (784)
.+-.. .+.+..+.+.+.+-+|+|+|.-|++++.||.|++|.- +|-...++.....+|.|++|.|+.+-++.+..+.+
T Consensus 90 l~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~ 168 (737)
T KOG1524|consen 90 LNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI 168 (737)
T ss_pred ecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence 87653 3445566788889999999999999999999999984 35444445557789999999999998888888888
Q ss_pred EEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC
Q 047260 698 KVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH 776 (784)
Q Consensus 698 ~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~ 776 (784)
.|=.+.....+..++.|++-|.+|.|++....|++|+.|-..+|||-..........|+-+|++++|.|+ +.++.++.
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee
Confidence 8888888888889999999999999999999999999999999999988888888899999999999999 66666664
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.9e-13 Score=144.79 Aligned_cols=266 Identities=14% Similarity=0.176 Sum_probs=176.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
-.-+|.|+.|-+...+|+.|+.+.. -+ +-..+.-...++.+.+.+..=..+ .-..|.+.|.+......
T Consensus 12 ~g~PiYa~~~i~s~~llvagggg~~-----~~------~~~~n~vssl~~~~~~g~~~~~~~-~~~~i~~~~~d~~~tsl 79 (398)
T KOG0771|consen 12 VGFPIYAAKWINSRHLLVAGGGGQA-----AK------TGIGNSVSSLHLVLTGGGGKGRSG-ISSEIHIFDTDDMPTSL 79 (398)
T ss_pred cCCceEEEEeeCCCceEEEeccCcc-----cc------cCCCCcceeEEEEecCCCcccccc-cceeeEeeecCCcchhh
Confidence 3446999999999888887765543 00 011122222334444422111110 01235555544321111
Q ss_pred ee------ccC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeE----------EeecCCeeEEEEecCCCEE
Q 047260 586 QA------YTG-HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCT----------HITKGGTAQVRFQPRIGQL 647 (784)
Q Consensus 586 ~~------~~~-h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~----------~~~~~~v~~v~fsp~~~~L 647 (784)
.. ..+ ..........+|.+...++....++....|..-.. .+- ....+.-.+++|+.++..+
T Consensus 80 s~~~~~~~~vG~~~~~~~~~~~h~~~~~~~~k~~~~~~~~~~e~~~~~d~~~~~~a~v~~~l~~~g~~k~vaf~~~gs~l 159 (398)
T KOG0771|consen 80 SESPGGIILVGCDDGAPYRESVHPNGNGRARKLPSGCECFHFEFVASSDFNAETAANVYQKLVDFGQQKVVAFNGDGSKL 159 (398)
T ss_pred ccCcCCeeEeccCCCcchhhhccccCCeeeeecCCcccccccccccccccchhhhhhHhHHHhhcCcceEEEEcCCCCEe
Confidence 00 001 11123444556666666665555555444433211 000 0111333789999999999
Q ss_pred EEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec---------------
Q 047260 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS--------------- 712 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~--------------- 712 (784)
++++.||+++||+......+..+..|...|.++.|+|||++|++.+.+..+||+..++.++....
T Consensus 160 atgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~ 239 (398)
T KOG0771|consen 160 ATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSV 239 (398)
T ss_pred eeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecc
Confidence 99999999999998888888888889999999999999999999998899999998872221111
Q ss_pred ----------------------------c-----------CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe-
Q 047260 713 ----------------------------S-----------NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI- 752 (784)
Q Consensus 713 ----------------------------~-----------~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~- 752 (784)
. ....|.+++++++|++++.|+.||.|.|++..+-+++.+
T Consensus 240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 240 DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 0 023678999999999999999999999999999888743
Q ss_pred -cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 753 -AAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 753 -~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
..|...|+.|.|+||.+++++.+.|..+.|.
T Consensus 320 k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 320 KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 4799999999999999999998888877653
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=1.8e-13 Score=148.12 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=168.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----eecCCCCCCeEEEEEc-----cCCCEEEEEeCCCeEEEEcCC
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE----STPEDHKSVVTDVRFR-----PNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~It~i~fs-----pdg~~Latgs~Dg~I~IWdl~ 579 (784)
.++...++-.|++|+..- ...++||+...+..+ ....-.....+|-+|+ +++--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 355555666677776543 345888887732211 1111111223444442 355567888788889888876
Q ss_pred CCcceeeecc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee--EEEEecCCCEEEEEECC
Q 047260 580 NPNFCSQAYT----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA--QVRFQPRIGQLLAAASD 653 (784)
Q Consensus 580 ~~~~~~~~~~----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~--~v~fsp~~~~Ll~~s~D 653 (784)
..+ ..+.+. -....|+|+.|-|.++.+|++.-.+|.+++||.+- ....+ +....+++..+.+....
T Consensus 204 ~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 532 222221 13478999999999999999999999999998731 11111 12223344444333221
Q ss_pred CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260 654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV 732 (784)
Q Consensus 654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s 732 (784)
+ ..+..++..+....+.|+.++|+|||++||+.+.| .++|||+.+.+++..++..-+...||+|+|||+||++
T Consensus 276 s------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 276 S------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred c------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence 1 11123444444456689999999999999999966 9999999999888888877788999999999999999
Q ss_pred EECCCeEEEEECCCCceE-EecccCCceEEEEEe
Q 047260 733 VGGISSLELWNMAENKSM-TIAAHENIISALAQS 765 (784)
Q Consensus 733 ~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafs 765 (784)
|+.|.-|.||.+.+++.+ .-.+|.+.|+.|+|.
T Consensus 350 GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 350 GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999988 667999999999998
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=1e-12 Score=134.80 Aligned_cols=270 Identities=14% Similarity=0.213 Sum_probs=198.2
Q ss_pred CCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCcce
Q 047260 507 NSKVTCCHFSSDGKLLAS-SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Las-gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
-+.|.-+.|..|..++++ ...|+.|.+|++...+-...+.....++..++|+|||+ +|.+...|-.|.||.+.+.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999998876654 56788999999998888888988999999999999995 4566677999999999886533
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----------------------------------CeEEEEeCCCCeeE-
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDND-----------------------------------NEIQYWSINPFLCT- 628 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----------------------------------g~I~iwDl~~~~~~- 628 (784)
.... ....+..++|+|++.+..+..-.| ..+.+||.--...+
T Consensus 128 ~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 128 LLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred Eecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 2222 233467788888887443333222 23444543222221
Q ss_pred -EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE-----------------------------------------
Q 047260 629 -HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ----------------------------------------- 666 (784)
Q Consensus 629 -~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~----------------------------------------- 666 (784)
....-++..+.|+|.+..|++|+.|+.++|.+--+-+.
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 12225678899999999999999999888754221110
Q ss_pred -------------------EEEEe------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCCceEEEeccCCCce
Q 047260 667 -------------------THSLQ------GHAELVNYICWDTNGDYLASVSQN---LVKVWSMASGECIQELSSNGNQF 718 (784)
Q Consensus 667 -------------------i~~l~------~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~~~i~~l~~~~~~I 718 (784)
+..++ ...-.+.-++|++|..|+++-.|+ .+-+||++..+....+ ....+|
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pi 364 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPI 364 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccce
Confidence 00111 112245668999999999999876 7999999877654443 344789
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCc
Q 047260 719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS 779 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~ 779 (784)
....|+|....|+++.+...+++|......++......-.|..+.|.-+|..++-++.|..
T Consensus 365 raf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999999999999999999999999988777766666678999999999999999988853
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=1e-12 Score=142.39 Aligned_cols=196 Identities=20% Similarity=0.305 Sum_probs=143.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecC----CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCC
Q 047260 517 SDGKLLASSGHDRKVVLWNMDTLQTESTPE----DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGH 591 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~----~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h 591 (784)
+++--|++|-..|.|.+.|....+..+.+. -.+..|+||.|-| +...++++-.+|.+.+||..... +.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GA 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cC
Confidence 456668888888999999876533222221 1347899999999 44566777789999999873211 10
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260 592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ 671 (784)
Q Consensus 592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~ 671 (784)
..+ +-...+++..+-+-.+ ....+-++..+....++.+..++|+|||.+|++.+.||.++|||..+.+++..++
T Consensus 256 t~p--~~~~~k~~~~f~i~t~----ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 256 TAP--SYQALKDGDQFAILTS----KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred CCC--cccccCCCCeeEEeee----eccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence 111 1111223321211111 1111224455556667889999999999999999999999999999988887777
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP 725 (784)
Q Consensus 672 ~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp 725 (784)
..-+...|++|+|||+||++|++| .|.||.+..++.+..-.+|.++|..++|.|
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 778899999999999999999966 999999999999999999999999999983
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=3.6e-13 Score=138.95 Aligned_cols=274 Identities=16% Similarity=0.310 Sum_probs=190.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeeecCCC------------CCCeEEEEEccCC--CEEEEE
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-----TESTPEDH------------KSVVTDVRFRPNS--SQLATA 567 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h------------~~~It~i~fspdg--~~Latg 567 (784)
.+-|.++.|..+|.+||||+.+|.|.+|.-+... ....+..| ...|..|.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3558999999999999999999999999755322 22233333 3568999999854 467777
Q ss_pred eCCCeEEEEcCCCCcce----------------------------------eee-ccCCCCCeEEEEEcCCCCcEEEEEe
Q 047260 568 SVDKSVRLWDAANPNFC----------------------------------SQA-YTGHSSPIMSLDFHPKKTDLFCFCD 612 (784)
Q Consensus 568 s~Dg~I~IWdl~~~~~~----------------------------------~~~-~~~h~~~V~sl~~sp~~~~ll~sgs 612 (784)
..|++|++|.+...... .+. -..|+..|.+|.++.|... +++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Eee-c
Confidence 88999999988642211 011 1367888999999998874 444 4
Q ss_pred CCCeEEEEeCCC----CeeEEeec-------CCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEE----EEE------
Q 047260 613 NDNEIQYWSINP----FLCTHITK-------GGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQT----HSL------ 670 (784)
Q Consensus 613 ~dg~I~iwDl~~----~~~~~~~~-------~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i----~~l------ 670 (784)
+|-.|.+|+++- ...+.+.. .-|++..|+|.. +.++..++.|+|++.|++...+. +.+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 488999999863 22222221 346777899975 45666777899999999853221 111
Q ss_pred ------eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeC-CCCceEEEeccCC------------Cc---eEEEEEecCCC
Q 047260 671 ------QGHAELVNYICWDTNGDYLASVSQNLVKVWSM-ASGECIQELSSNG------------NQ---FHSCVFHPSYS 728 (784)
Q Consensus 671 ------~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl-~t~~~i~~l~~~~------------~~---I~sl~fspdg~ 728 (784)
.+--..|..+.|+++|+|+++-.--+|+|||+ ...+++.++..|. .. -..|+|+.++.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 11234678899999999999887779999999 4556777766553 11 25689999999
Q ss_pred EEEEEECCCeEEEEECCCCceEEe--------------------c--c-------------cCCceEEEEEeCCCCEEEE
Q 047260 729 TLLVVGGISSLELWNMAENKSMTI--------------------A--A-------------HENIISALAQSPVTGMVAS 773 (784)
Q Consensus 729 ~L~s~s~dg~I~Iwdl~~~~~~~~--------------------~--~-------------h~~~V~slafspdg~~LaS 773 (784)
++++|+....+++|++..+..... . + ....|...+|+|..+.||+
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~ 422 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAV 422 (433)
T ss_pred eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeee
Confidence 999999999999999665432210 0 0 0113556789999999998
Q ss_pred EECCCcEEEe
Q 047260 774 ASHDSSVKLW 783 (784)
Q Consensus 774 gs~DG~V~IW 783 (784)
+.... +.||
T Consensus 423 aatnn-lyif 431 (433)
T KOG1354|consen 423 AATNN-LYIF 431 (433)
T ss_pred eecCc-eEEe
Confidence 87654 4444
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.2e-12 Score=148.59 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=159.4
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~ 605 (784)
..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++... .+....+.+.+..|+|++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence 457777775 44445555778889999999999999887753 35999999877632 2333345567899999999
Q ss_pred cEEEEEeCCCeEEEEe--CCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CCcEEEE--ECCCCeEEEEEeCCCCCEE
Q 047260 606 DLFCFCDNDNEIQYWS--INPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DKVVSIF--DIETDRQTHSLQGHAELVN 678 (784)
Q Consensus 606 ~ll~sgs~dg~I~iwD--l~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg~I~Iw--Dl~t~~~i~~l~~h~~~V~ 678 (784)
.++++.+.++...+|. +......... ........|+|+++.|+..+. ++...|| |+..++... +..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 8888877787766554 4444333222 233566789999999887665 4555555 444444322 222233345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEE
Q 047260 679 YICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMT 751 (784)
Q Consensus 679 sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~ 751 (784)
...|+|||++|+..+.. .|.+||+.+++... +... .......|+|+++.|+.++.++ .+.+.++.......
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~ 409 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQR 409 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence 67899999999876632 69999998886543 3322 2346789999999998888664 46777775544445
Q ss_pred ecccCCceEEEEEeCC
Q 047260 752 IAAHENIISALAQSPV 767 (784)
Q Consensus 752 ~~~h~~~V~slafspd 767 (784)
+..+.+.+...+|+|-
T Consensus 410 l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 410 LSVQGGDVREPSWGPF 425 (427)
T ss_pred eecCCCCCCCCccCCC
Confidence 6667788888899873
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=7.3e-13 Score=139.01 Aligned_cols=260 Identities=10% Similarity=0.167 Sum_probs=200.2
Q ss_pred cCCCceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeec------CCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 505 SRNSKVTCCHFSSDGK--LLASSGHDRKVVLWNMDTLQTESTP------EDHKSVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~--~Lasgs~Dg~I~IWd~~t~~~~~~l------~~h~~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
.....|+.++|.-|++ .|..++.|..+..+.+....+...+ ......|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3456688888887654 4554446777887777765554443 2345566666654 3478888899999999
Q ss_pred cCCCCcc---eeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEeecC------------CeeEEE
Q 047260 577 DAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFLCTHITKG------------GTAQVR 639 (784)
Q Consensus 577 dl~~~~~---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~~~~~~~~------------~v~~v~ 639 (784)
..+.+.. ....+.. ...+..+.-++..++++++|+.. ..+.+||++..+.+..-+. -++.+.
T Consensus 131 ~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 9884431 1122222 25577777888888899999998 8999999998765544331 235677
Q ss_pred EecC--CCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE-eccC
Q 047260 640 FQPR--IGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE-LSSN 714 (784)
Q Consensus 640 fsp~--~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~-l~~~ 714 (784)
|-+. ...|++++.-+.|++||.+.+ +++..|.-...+|+++...|++++|+++... .+..||++.++.+.. +.+-
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 8877 788999999999999999976 6888888888999999999999999998854 999999999988766 7888
Q ss_pred CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCC
Q 047260 715 GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPV 767 (784)
Q Consensus 715 ~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspd 767 (784)
.+.|.++..+|..+++++++-|..|+|+|+.+.+.+.-..-...+++|-+.++
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 89999999999999999999999999999999777655555666777777554
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.5e-12 Score=147.83 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=152.3
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCCeEEEEcC
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDKSVRLWDA 578 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg~I~IWdl 578 (784)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34567789999999999999877643 359999999887643 333445677899999999886 4677887777765
Q ss_pred CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC--CCCeeEEee-c-CCeeEEEEecCCCEEEEEECCC
Q 047260 579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI--NPFLCTHIT-K-GGTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl--~~~~~~~~~-~-~~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
+........+..+...+....|+|++..+++++..++...+|.+ ......... . .......|+|+|++|+..+.++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 32221234445555566778999999988877766666666654 443332222 2 2344578999999998877654
Q ss_pred ---cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260 655 ---VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 655 ---~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd 726 (784)
.|.+||+.+++... +.. ......+.|+|||+.|+..++. .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus 350 g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 350 GAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 69999998876543 322 2334678999999998887632 5677777 46666666666667777788774
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=9.5e-13 Score=153.88 Aligned_cols=249 Identities=16% Similarity=0.257 Sum_probs=177.4
Q ss_pred EECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCc------ceeeeccCCCCCeEEEEEcCCCCc
Q 047260 534 WNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPN------FCSQAYTGHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 534 Wd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~ 606 (784)
|+.+ |..+..+..|...|..++.++.. .+|++||.||+|++||.+.-. ....++....+.+.++...+.+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~- 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD- 1111 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-
Confidence 5554 78888999999999999988854 999999999999999987422 12223333567888998888877
Q ss_pred EEEEEeCCCeEEEEeCCCCe-------eEEeec----CCeeEE-EEec-CCC-EEEEEECCCcEEEEECCCCeEEEEEe-
Q 047260 607 LFCFCDNDNEIQYWSINPFL-------CTHITK----GGTAQV-RFQP-RIG-QLLAAASDKVVSIFDIETDRQTHSLQ- 671 (784)
Q Consensus 607 ll~sgs~dg~I~iwDl~~~~-------~~~~~~----~~v~~v-~fsp-~~~-~Ll~~s~Dg~I~IwDl~t~~~i~~l~- 671 (784)
.+++++.||.|.+.+++... +.+..+ +.+.++ +|.. ... .++.+..-+.|..||++.......++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55666899999999997521 111111 333332 2222 223 56777778999999999876655554
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-cCCCceEEEEEecCCC---EEEEEEC--CCeEEEEE
Q 047260 672 -GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-SNGNQFHSCVFHPSYS---TLLVVGG--ISSLELWN 743 (784)
Q Consensus 672 -~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg~---~L~s~s~--dg~I~Iwd 743 (784)
...+.|++++.+|.+.+++.|+.. .+.+||++-+.++..+. .+..+|..+..+|..+ ..++++. .+.|.+|+
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 356789999999999999999855 99999999998888775 3456777777776544 4555544 46899999
Q ss_pred CCCCceEEe-cc-------------------cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 744 MAENKSMTI-AA-------------------HENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 744 l~~~~~~~~-~~-------------------h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.++.+... .. +.-.....++...+.++.+|+.|..|+.||
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 998865421 11 111222334444566999999999999998
No 221
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.1e-12 Score=146.14 Aligned_cols=269 Identities=19% Similarity=0.247 Sum_probs=190.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC---CEEEEEeCCCeEEEEcCCCCcceee
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS---SQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg---~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
-..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+. ..+
T Consensus 19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llk 96 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLK 96 (792)
T ss_pred ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEE
Confidence 33456899999888665 5679999999999999999999999999999844 478899999999999999876 444
Q ss_pred eccCCCCCeEEEEEcCC---CCcEEEEEeCCC------------eEEEEeCCCCeeE--EeecC--CeeEEEEecCCCEE
Q 047260 587 AYTGHSSPIMSLDFHPK---KTDLFCFCDNDN------------EIQYWSINPFLCT--HITKG--GTAQVRFQPRIGQL 647 (784)
Q Consensus 587 ~~~~h~~~V~sl~~sp~---~~~ll~sgs~dg------------~I~iwDl~~~~~~--~~~~~--~v~~v~fsp~~~~L 647 (784)
++..+ .++..+.+.|. ....+..+..+. .++-+.+.+.... ...+. ...++.+++.+...
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 44432 33434333221 111111121111 1121222111000 00111 13556677665544
Q ss_pred EEEECCCcEEEEECCCCeEEEE---E-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCC--C--ceEEEeccCCCce
Q 047260 648 LAAASDKVVSIFDIETDRQTHS---L-QGHAELVNYICWDTNGDYLASVS-QNLVKVWSMAS--G--ECIQELSSNGNQF 718 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t~~~i~~---l-~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t--~--~~i~~l~~~~~~I 718 (784)
. ...+..+.+|+..++..... . ..|.-.+++.+++|++++++++. ||.|.+|.--. + .....+.-|...|
T Consensus 176 ~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 176 G-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred E-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 4 44456788888876541111 1 12566789999999999999998 55999996432 2 2345667788999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
.+++|+++|.+|++|+.++.+.+|.+.+++...+..-.++|..+.++||+.+.+....|..|.+
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 9999999999999999999999999999997788888999999999999999999999998876
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=9.2e-11 Score=129.39 Aligned_cols=259 Identities=14% Similarity=0.190 Sum_probs=178.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--c--eeeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEE
Q 047260 506 RNSKVTCCHFSSDGKLLASSGH----DRKVVLWNMDTL--Q--TESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLW 576 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~----Dg~I~IWd~~t~--~--~~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IW 576 (784)
-......++++|++++|+++.. ++.|..|++... + .+............++++|++++|+++.. +|.|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3445677889999999998876 568999988753 2 33333334456678999999999999875 8999999
Q ss_pred cCCCCcceeee---c----------cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEE--ee----cCCe
Q 047260 577 DAANPNFCSQA---Y----------TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTH--IT----KGGT 635 (784)
Q Consensus 577 dl~~~~~~~~~---~----------~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~--~~----~~~v 635 (784)
++.....+... + ........++.|+|+++.++++.-....|.+|+++... ... .. ....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 99874322221 1 11235578999999999888877777899999997643 211 11 1456
Q ss_pred eEEEEecCCCEEEEEEC-CCcEEEEECC--CCe--EEEEEeC------CCCCEEEEEEcCCCCEEEEEeC--CeEEEEeC
Q 047260 636 AQVRFQPRIGQLLAAAS-DKVVSIFDIE--TDR--QTHSLQG------HAELVNYICWDTNGDYLASVSQ--NLVKVWSM 702 (784)
Q Consensus 636 ~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~--t~~--~i~~l~~------h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl 702 (784)
..+.|+|+++++++... ++.|.+|++. ++. .+..+.. .......|+++|||++|+++.. +.|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 88999999999988887 7899999988 442 2233321 1125788999999999998874 49999999
Q ss_pred C--CC--ceEEEeccCCCceEEEEEecCCCEEEEEECC-CeEEEEEC--CCCceEEec--ccCCceEEEEE
Q 047260 703 A--SG--ECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNM--AENKSMTIA--AHENIISALAQ 764 (784)
Q Consensus 703 ~--t~--~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl--~~~~~~~~~--~h~~~V~slaf 764 (784)
. ++ +.+..+.......+.+.++|++++|+++..+ +.|.+|++ .++...... ..-....||.|
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 4 33 3445555555668999999999999998865 68999876 455544322 23345566665
No 223
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.51 E-value=1.2e-12 Score=137.82 Aligned_cols=282 Identities=15% Similarity=0.142 Sum_probs=187.3
Q ss_pred CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260 436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF 515 (784)
Q Consensus 436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f 515 (784)
.+......+.|.++.+.+ ++|+.++.+.+|...+-. .. ..........-.+...+.+++|...|..++|
T Consensus 63 ~H~~aVN~vRf~p~gelL-ASg~D~g~v~lWk~~~~~---~~-------~~d~e~~~~ke~w~v~k~lr~h~~diydL~W 131 (434)
T KOG1009|consen 63 RHTRAVNVVRFSPDGELL-ASGGDGGEVFLWKQGDVR---IF-------DADTEADLNKEKWVVKKVLRGHRDDIYDLAW 131 (434)
T ss_pred CCcceeEEEEEcCCcCee-eecCCCceEEEEEecCcC---Cc-------cccchhhhCccceEEEEEecccccchhhhhc
Confidence 344556667776666555 578899999999775411 11 0000001112236677888999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC-C
Q 047260 516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS-P 594 (784)
Q Consensus 516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~-~ 594 (784)
+||+.++++++.|..+++||+..+.....+.+|...|..++|.|-+.++++-+.|...+++.+..... ...|.. .
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~ 207 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDI 207 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999998777777654331 111110 1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC----CCc-----EEEEECCC-C
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS----DKV-----VSIFDIET-D 664 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~----Dg~-----I~IwDl~t-~ 664 (784)
...-++++. .....++|.-++. +.-...++|+|+|..+++... ++. .++|+-.. .
T Consensus 208 m~~~~~~~~---------e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 208 MPAKAFNER---------EGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred eeecccCCC---------CcceeeeeecCch------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 111111111 1112233322221 122345667777777766442 222 34454332 2
Q ss_pred eEEEEEeCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEeCCCCceEEEec-cCCCceEEEEEec
Q 047260 665 RQTHSLQGHAELVNYICWDT------------------NGDYLASVSQNLVKVWSMASGECIQELS-SNGNQFHSCVFHP 725 (784)
Q Consensus 665 ~~i~~l~~h~~~V~sl~~sp------------------dg~~Lasgsdd~I~IwDl~t~~~i~~l~-~~~~~I~sl~fsp 725 (784)
+++..+.....++..+.|+| .+-.++.++.+.|+|||..+-+++.... .|-..|+.++|++
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~ 352 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD 352 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence 34444444444555444443 3456788889999999999987776654 4778899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCC
Q 047260 726 SYSTLLVVGGISSLELWNMAEN 747 (784)
Q Consensus 726 dg~~L~s~s~dg~I~Iwdl~~~ 747 (784)
+|..+++.+.||...+..++..
T Consensus 353 dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred CCcEEEEeccCCceEEEEEcch
Confidence 9999999999996665555443
No 224
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.51 E-value=1.1e-14 Score=145.68 Aligned_cols=77 Identities=30% Similarity=0.714 Sum_probs=66.7
Q ss_pred CcchHHHhHHHHHHHHhhcCChHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHhhhcccCC----CCcHHHHHHH
Q 047260 4 GNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTND----KHSENAAAYI 79 (784)
Q Consensus 4 ~~~~~~~~l~~yiydy~~k~~~~~~a~~~~~e~~~~~~~~~~~~~~~fl~eww~~fwd~~~a~~~~----~~~~~~~~y~ 79 (784)
++-.|++.|..||||||++-+..++|+.|+.|..+.++ +.+-.+.+||.+|||||||+|+|..++ .+|..|+.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 45679999999999999999999999999999987776 567888999999999999999995544 5777777776
Q ss_pred HH
Q 047260 80 ET 81 (784)
Q Consensus 80 ~~ 81 (784)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 65
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=1.7e-12 Score=133.17 Aligned_cols=220 Identities=18% Similarity=0.279 Sum_probs=174.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 047260 547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP 624 (784)
Q Consensus 547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~ 624 (784)
....+|+|.+|++|...+|++.....|.||...... ....++..|...|+.|+|.|..+ .|++|+.|..-++|....
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccCC
Confidence 345789999999999999999999999999987655 35677889999999999999976 678999999999999832
Q ss_pred ------CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEE----EEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260 625 ------FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH----SLQGHAELVNYICWDTNGDYLASVSQ 694 (784)
Q Consensus 625 ------~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~----~l~~h~~~V~sl~~spdg~~Lasgsd 694 (784)
...+..+....++|.|+|.++.+++++....|.||-++....-. .-+.+...|+++.|+|++-+|++|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 33456677899999999999999999999999999887543321 12346788999999999999999995
Q ss_pred C-eEEEEeCC-----C-------------CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc--eEEec
Q 047260 695 N-LVKVWSMA-----S-------------GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK--SMTIA 753 (784)
Q Consensus 695 d-~I~IwDl~-----t-------------~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~--~~~~~ 753 (784)
| ..+|+..- . |..+.++....+.|..+.|+|+|..|+-.+.|+.+.+-|..... ...+.
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 5 88877631 1 23445555667889999999999999999999999999987764 22332
Q ss_pred ccCCceEEEEEeCC
Q 047260 754 AHENIISALAQSPV 767 (784)
Q Consensus 754 ~h~~~V~slafspd 767 (784)
...-+..++.|-.+
T Consensus 247 ~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 247 TAQLPLLSVSWISE 260 (361)
T ss_pred hccCCceeeEeecC
Confidence 22255666666543
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=147.99 Aligned_cols=290 Identities=14% Similarity=0.179 Sum_probs=222.1
Q ss_pred cCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEE
Q 047260 433 GSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTC 512 (784)
Q Consensus 433 g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~ 512 (784)
...++..+...+.|....+.++ +||.|..|.+|++.... ..+....+|...|.-
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~-SgSDD~~vv~WdW~~~~-------------------------~~l~f~SGH~~NvfQ 190 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLA-SGSDDLQVVVWDWVSGS-------------------------PKLSFESGHCNNVFQ 190 (559)
T ss_pred cccCCCCccceeeecccCceee-ccCccceEEeehhhccC-------------------------cccccccccccchhh
Confidence 3455667778888877776665 69999999999875443 122234568888888
Q ss_pred EEEcC--CCCEEEEEeCCCeEEEEECCC-Cc--eeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcce--
Q 047260 513 CHFSS--DGKLLASSGHDRKVVLWNMDT-LQ--TESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFC-- 584 (784)
Q Consensus 513 l~fsp--dg~~Lasgs~Dg~I~IWd~~t-~~--~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~-- 584 (784)
..|-| +..-|++++.||.|++=.+.. +. ....+..|.+.|..++.-|+. ..|.+++.|+.|.-+|++.....
T Consensus 191 aKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 191 AKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred hhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 88888 445799999999999987653 22 234566899999999999954 56899999999999999875421
Q ss_pred eeeccCCCC---CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE------E---------eecCCeeEEEEecCCCE
Q 047260 585 SQAYTGHSS---PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT------H---------ITKGGTAQVRFQPRIGQ 646 (784)
Q Consensus 585 ~~~~~~h~~---~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~------~---------~~~~~v~~v~fsp~~~~ 646 (784)
......+.. ....|+.+|...+.+++++.|-.+++||.+..... . .....|++++|+.++..
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 112222333 56789999999999999999999999998753221 1 12246899999999999
Q ss_pred EEEEECCCcEEEEECCC--C----------eEEEE-EeCCCC--CEEEEE-EcCCCCEEEEEeCC-eEEEEeCCCCceEE
Q 047260 647 LLAAASDKVVSIFDIET--D----------RQTHS-LQGHAE--LVNYIC-WDTNGDYLASVSQN-LVKVWSMASGECIQ 709 (784)
Q Consensus 647 Ll~~s~Dg~I~IwDl~t--~----------~~i~~-l~~h~~--~V~sl~-~spdg~~Lasgsdd-~I~IwDl~t~~~i~ 709 (784)
|++...|-.|++|.-.. + ..++. +++|.. .|..+- |-|...|+++|+|. .|.||+-.+++.|.
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 99999999999995432 2 12233 677765 456665 46889999999987 99999999999999
Q ss_pred EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260 710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748 (784)
Q Consensus 710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~ 748 (784)
.+.+....|+|+.-+|.-+.|++++-|..|+||...+.+
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 988887899999999999999999999999999875443
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.8e-12 Score=143.61 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=153.0
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCC--eEEEE
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDK--SVRLW 576 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg--~I~IW 576 (784)
+..+...+.+.+|||||+.|+..+. +..|++|++.+++... +....+.+..+.|+|||+.|+.. +.+| .|.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3446678999999999998886542 4579999998876433 22333445678999999988865 4444 58889
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE--IQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~--I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~ 652 (784)
|++++. .. .+..+...+....|+|++..++++...++. |+++|+.+....... ........|+|+++.|+..+.
T Consensus 273 d~~tg~-~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ-IR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC-EE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 33 333445567889999999977777766654 445566655443322 234456889999999988765
Q ss_pred C---CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260 653 D---KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHP 725 (784)
Q Consensus 653 D---g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp 725 (784)
+ ..|.+||+.+++.. .+... .......|+|||++|+..+.+ .+.++++ +|.....+..+...+...+|+|
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3 45889999887643 33321 223467899999998887743 4778887 5666677777778888888987
Q ss_pred C
Q 047260 726 S 726 (784)
Q Consensus 726 d 726 (784)
-
T Consensus 428 ~ 428 (429)
T PRK03629 428 Y 428 (429)
T ss_pred C
Confidence 3
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.3e-12 Score=145.32 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=154.6
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCC--eEE
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDK--SVR 574 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg--~I~ 574 (784)
..+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .|.
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3345677789999999999999887643 469999998876543 334455566889999999775 445555 599
Q ss_pred EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEE
Q 047260 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~ 650 (784)
+||+.++. ...+..+......++|+|++..++++...+|. |+++|+.+........ ......+|+|+++.|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 23344555556788999999978777766665 6677776654433322 234468999999999887
Q ss_pred ECCC---cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260 651 ASDK---VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVF 723 (784)
Q Consensus 651 s~Dg---~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~f 723 (784)
+.++ .|.+||+.+++.. .+. +........|+|||++|+..++ + .|.++++. +.....+..+...+...+|
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~w 430 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAW 430 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCcc
Confidence 6543 6999999887654 333 2234456799999998877663 2 68888885 4455566555566777777
Q ss_pred ec
Q 047260 724 HP 725 (784)
Q Consensus 724 sp 725 (784)
+|
T Consensus 431 sp 432 (433)
T PRK04922 431 SP 432 (433)
T ss_pred CC
Confidence 76
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=148.67 Aligned_cols=210 Identities=19% Similarity=0.315 Sum_probs=158.5
Q ss_pred eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEE
Q 047260 541 TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK-KTDLFCFCDNDNEIQY 619 (784)
Q Consensus 541 ~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~-~~~ll~sgs~dg~I~i 619 (784)
....+.+|.+.|.|+.|+.+|.+|++||.|-.+.|||.-..+....+-.+|...|.++.|-|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 346778999999999999999999999999999999998777677777899999999999995 4568899999999999
Q ss_pred EeCCCC-------------eeEEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEE----------EEeCCCC
Q 047260 620 WSINPF-------------LCTHITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTH----------SLQGHAE 675 (784)
Q Consensus 620 wDl~~~-------------~~~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~----------~l~~h~~ 675 (784)
||+... .+...+...|..++..|.+ ..+++++.||+|+-+|++...... .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999842 1222233567778888888 678899999999999998632111 1111223
Q ss_pred CEEEEEEcCC-CCEEEEEeCC-eEEEEeCCC--------C----------ceEEEecc-CC--------Cc---eEEEEE
Q 047260 676 LVNYICWDTN-GDYLASVSQN-LVKVWSMAS--------G----------ECIQELSS-NG--------NQ---FHSCVF 723 (784)
Q Consensus 676 ~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t--------~----------~~i~~l~~-~~--------~~---I~sl~f 723 (784)
...|+..+|. ..+|++|+.+ ..++||.+. + .|+..+.. |- .. ++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 5678889985 4577888777 999999431 1 12333321 11 11 456689
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 724 HPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 724 spdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
+|+|.-|++.-....|++||+..++..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999988888777779999999887654
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.9e-11 Score=132.34 Aligned_cols=268 Identities=18% Similarity=0.265 Sum_probs=185.8
Q ss_pred ceEEEEEcCCCCEEEEE-----eC-----CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260 509 KVTCCHFSSDGKLLASS-----GH-----DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasg-----s~-----Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl 578 (784)
.++++.|+|.|.+|.+= .. .-.+.+|+++++.....+......-+++.|+.|..+.+- -..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEec
Confidence 68999999999998862 11 234789999986555555433323368999987754332 33567999999
Q ss_pred CCCcceeeeccCCCCCeEEEEEcCCC-CcEEEE-----EeCCCeEEEEeCCC------CeeEEeecCCeeEEEEecCCCE
Q 047260 579 ANPNFCSQAYTGHSSPIMSLDFHPKK-TDLFCF-----CDNDNEIQYWSINP------FLCTHITKGGTAQVRFQPRIGQ 646 (784)
Q Consensus 579 ~~~~~~~~~~~~h~~~V~sl~~sp~~-~~ll~s-----gs~dg~I~iwDl~~------~~~~~~~~~~v~~v~fsp~~~~ 646 (784)
.+.+.....+ |...|..+.++|.. ...+++ .+.-..|++|.+.. ..+...++..-..+.|++.+.-
T Consensus 154 ~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 8755333333 56789999999983 334443 23456899998762 1222334455667788888765
Q ss_pred EEEE-EC--CC---------cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCCceEEEe
Q 047260 647 LLAA-AS--DK---------VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN---LVKVWSMASGECIQEL 711 (784)
Q Consensus 647 Ll~~-s~--Dg---------~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~~~i~~l 711 (784)
|++- +. |. +++++++....+...+. ..++|.+++|+++++-++++..= .+.|||++ +.++..+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df 309 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF 309 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC
Confidence 4432 22 33 58888888444444443 68899999999999887776532 89999986 3444444
Q ss_pred ccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC------CCcEEE
Q 047260 712 SSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH------DSSVKL 782 (784)
Q Consensus 712 ~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~------DG~V~I 782 (784)
..++-+++.|+|.|++|+.+|-+ |.|.|||+.+.+++....-.+ -+-+.|+|||.+|+|+.. |+.++|
T Consensus 310 --~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 310 --PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred --CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 45667899999999999888876 799999999977774333222 345789999999998863 678899
Q ss_pred eC
Q 047260 783 WK 784 (784)
Q Consensus 783 Wd 784 (784)
|+
T Consensus 387 wh 388 (566)
T KOG2315|consen 387 WH 388 (566)
T ss_pred EE
Confidence 85
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=2.9e-11 Score=136.74 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=159.7
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~ 605 (784)
..|.++|..... ...+..+...+...+|+|++++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 458888886443 44555677789999999999999988754 4799999987652 22334556677899999999
Q ss_pred cEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEeCCCCCEE
Q 047260 606 DLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-K--VVSIFDIETDRQTHSLQGHAELVN 678 (784)
Q Consensus 606 ~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-g--~I~IwDl~t~~~i~~l~~h~~~V~ 678 (784)
.++++.+.++ .|++||+.+........ .......|+|++..|+.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 58889988765443332 334467899999998877653 3 6888888876643 3444556677
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEE
Q 047260 679 YICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMT 751 (784)
Q Consensus 679 sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~ 751 (784)
.+.|+|+|++|+.++.+ .|.+||+.++... .+... .......|+|++++|+..+.++ .+++.+........
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence 88999999998887643 7999999886542 33222 2345568999999988887764 46666765544444
Q ss_pred ecccCCceEEEEE
Q 047260 752 IAAHENIISALAQ 764 (784)
Q Consensus 752 ~~~h~~~V~slaf 764 (784)
+..+.+.+..++|
T Consensus 404 ~~~~~g~~~~~~w 416 (417)
T TIGR02800 404 LPLGNGDVREPAW 416 (417)
T ss_pred CCCCCCCcCCCCC
Confidence 4444555555554
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=2.5e-11 Score=124.64 Aligned_cols=227 Identities=12% Similarity=0.204 Sum_probs=162.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCC
Q 047260 551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSIN 623 (784)
Q Consensus 551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~ 623 (784)
....++|+.|...+++|.++| .+||+.+.-+.. .+.+....-.+..+-|- .+.+.++|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999888887766 899998753311 11111111222233332 23345555443 579999976
Q ss_pred CCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe--CCe
Q 047260 624 PFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHA--ELVNYICWDTNGDYLASVS--QNL 696 (784)
Q Consensus 624 ~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~--~~V~sl~~spdg~~Lasgs--dd~ 696 (784)
..+++.. +..+|..|.+.++ .++.-.++.|+||... +.+.++.+.... ..+.+++-..+..+||.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 6666654 4588999999876 4444556899999987 456777665432 3344444334455666655 349
Q ss_pred EEEEeCCCCce--EEEeccCCCceEEEEEecCCCEEEEEECCCe-EEEEECCCCceE-Eec--ccCCceEEEEEeCCCCE
Q 047260 697 VKVWSMASGEC--IQELSSNGNQFHSCVFHPSYSTLLVVGGISS-LELWNMAENKSM-TIA--AHENIISALAQSPVTGM 770 (784)
Q Consensus 697 I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~-I~Iwdl~~~~~~-~~~--~h~~~V~slafspdg~~ 770 (784)
|.|-|+...+. ...+..|.+.|.|++.+-+|..+++++..|+ |+|||..+++.+ ++. .....|.+++|+|+..+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999987655 4788899999999999999999999999996 899999999887 443 23457999999999999
Q ss_pred EEEEECCCcEEEe
Q 047260 771 VASASHDSSVKLW 783 (784)
Q Consensus 771 LaSgs~DG~V~IW 783 (784)
|+++|+.|+|.||
T Consensus 241 LavsSdKgTlHiF 253 (346)
T KOG2111|consen 241 LAVSSDKGTLHIF 253 (346)
T ss_pred EEEEcCCCeEEEE
Confidence 9999999999997
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.5e-11 Score=138.22 Aligned_cols=219 Identities=14% Similarity=0.174 Sum_probs=154.4
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCCe--EE
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDKS--VR 574 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg~--I~ 574 (784)
..+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 345568889999999999999887763 468999999887653 4445667788999999998875 4555555 77
Q ss_pred EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEE
Q 047260 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~ 650 (784)
+||+.++. ...+..+........|+|++..++++...+| .|+++|+......... .+.+....|+|+++.|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77887755 3445556666778999999997777765554 6888888765544433 3456678899999999887
Q ss_pred ECC---CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-------CeEEEEeCCCCceEEEeccCCCceEE
Q 047260 651 ASD---KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-------NLVKVWSMASGECIQELSSNGNQFHS 720 (784)
Q Consensus 651 s~D---g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-------d~I~IwDl~t~~~i~~l~~~~~~I~s 720 (784)
..+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..++ ..|.++|+..+.. ..+.. ...+..
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~ 427 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASD 427 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccC
Confidence 653 3688889865543 3333 2235678899999998876542 2577788766544 44443 344666
Q ss_pred EEEecC
Q 047260 721 CVFHPS 726 (784)
Q Consensus 721 l~fspd 726 (784)
.+|+|-
T Consensus 428 p~Wsp~ 433 (435)
T PRK05137 428 PAWSPL 433 (435)
T ss_pred cccCCC
Confidence 677763
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=3.8e-10 Score=124.54 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=178.1
Q ss_pred EEEEeCC----CeEEEEEC--CCCceeeec-CCCCCCeEEEEEccCCCEEEEEeC----CCeEEEEcCCCC--cc-eeee
Q 047260 522 LASSGHD----RKVVLWNM--DTLQTESTP-EDHKSVVTDVRFRPNSSQLATASV----DKSVRLWDAANP--NF-CSQA 587 (784)
Q Consensus 522 Lasgs~D----g~I~IWd~--~t~~~~~~l-~~h~~~It~i~fspdg~~Latgs~----Dg~I~IWdl~~~--~~-~~~~ 587 (784)
+++|+.. +.|.+|++ ++++....- .........++++|++++|+++.. ++.|..|++... .. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 67888888 344432211 123455677999999999999877 478999998764 21 1122
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEe---e-------------cCCeeEEEEecCCCEEEEE
Q 047260 588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHI---T-------------KGGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~---~-------------~~~v~~v~fsp~~~~Ll~~ 650 (784)
..........++++|++..++++...+|.|.++++.. +..... . ..+..++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 2223455678999999998888888899999999986 222211 1 1456789999999999988
Q ss_pred EC-CCcEEEEECCCCe--E--EEEEe-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCC--CCc--eEEEeccC----
Q 047260 651 AS-DKVVSIFDIETDR--Q--THSLQ-GHAELVNYICWDTNGDYLASVSQN--LVKVWSMA--SGE--CIQELSSN---- 714 (784)
Q Consensus 651 s~-Dg~I~IwDl~t~~--~--i~~l~-~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~--t~~--~i~~l~~~---- 714 (784)
.. ...|.+|++.... . ...+. .....-+.++|+|+++++++..+. .|.+|++. ++. .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 76 5789999997654 3 22232 244567899999999999888743 89999888 442 23333211
Q ss_pred --CCceEEEEEecCCCEEEEEECC-CeEEEEECCC--CceE---EecccCCceEEEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260 715 --GNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAE--NKSM---TIAAHENIISALAQSPVTGMVASAS-HDSSVKLWK 784 (784)
Q Consensus 715 --~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~--~~~~---~~~~h~~~V~slafspdg~~LaSgs-~DG~V~IWd 784 (784)
......++++|++++|+++... +.|.+|+++. ++.. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999998887754 6899999943 3433 2222344589999999999999887 467888874
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=9.6e-11 Score=129.77 Aligned_cols=261 Identities=11% Similarity=0.129 Sum_probs=170.9
Q ss_pred CEE-EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 520 KLL-ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 520 ~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+ ....+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-VVATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-EEEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-EEEEEec-CCCcceE
Confidence 344 455678999999999999999997655444557899999999999999999999999988 4444433 3457889
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----------CCeeEEEEecCCCEEEEEECC-CcEEEEECCCCeEE
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----------GGTAQVRFQPRIGQLLAAASD-KVVSIFDIETDRQT 667 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~D-g~I~IwDl~t~~~i 667 (784)
+++++|+++++++...+.+.++|.++.+.+.... ..+..+..++....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999999999999999999999988776654 245567778888877776665 88999998765433
Q ss_pred E-EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc----CCCceEEEEEecCC----------CEE
Q 047260 668 H-SLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS----NGNQFHSCVFHPSY----------STL 730 (784)
Q Consensus 668 ~-~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~----~~~~I~sl~fspdg----------~~L 730 (784)
. .............|+|+++|++++. ++.|.++|..+++.+..+.. |..++..+ .+|.. ...
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence 2 2233455677899999999988876 45999999999988776643 22222222 23332 222
Q ss_pred EEEECCCeEEEEECCCCceEE-ecccCCceEEEEEeCCCCEEEEE----ECCCcEEEeC
Q 047260 731 LVVGGISSLELWNMAENKSMT-IAAHENIISALAQSPVTGMVASA----SHDSSVKLWK 784 (784)
Q Consensus 731 ~s~s~dg~I~Iwdl~~~~~~~-~~~h~~~V~slafspdg~~LaSg----s~DG~V~IWd 784 (784)
++.-..+.+.+||....+.+. +...... ..+..+|++++|.+. ..++.|.|+|
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 222233356678888888774 4444444 778889999999988 3447787775
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.3e-11 Score=134.70 Aligned_cols=232 Identities=12% Similarity=0.107 Sum_probs=161.4
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 606 (784)
.|.++|.+.... ..+..+...+....|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|++..
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477888875443 4455677889999999999999887654 3689999987652 223333445567899999998
Q ss_pred EEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEEE
Q 047260 607 LFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVNY 679 (784)
Q Consensus 607 ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~s 679 (784)
++++.+.++ .|++||+.+........ .......|+|+++.++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 68888998765544332 33556789999998887765 3 358888888776433221 2233445
Q ss_pred EEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEe
Q 047260 680 ICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTI 752 (784)
Q Consensus 680 l~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~ 752 (784)
..|+|+|++|+..+. + .|.+||+.+++.. .+... .......|+|+|+.|+..+.+ ..|.++++.......+
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 789999999887763 2 6899999887643 33222 222356899999998887765 3588888876655556
Q ss_pred cccCCceEEEEEeCC
Q 047260 753 AAHENIISALAQSPV 767 (784)
Q Consensus 753 ~~h~~~V~slafspd 767 (784)
..+.+.+...+|+|-
T Consensus 414 ~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 414 PTAQGEVREPSWSPY 428 (430)
T ss_pred cCCCCCcCCCccCCC
Confidence 556677788888863
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=3e-13 Score=144.25 Aligned_cols=229 Identities=14% Similarity=0.166 Sum_probs=184.2
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT 628 (784)
Q Consensus 549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~ 628 (784)
...-..+.++.+|+.|+.|+..|.|..+|..+... ...+. -...|.++.|..+.. +|++ .....++|||-... .+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei~-v~Etv~Dv~~LHneq-~~AV-AQK~y~yvYD~~Gt-El 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEIN-VMETVRDVTFLHNEQ-FFAV-AQKKYVYVYDNNGT-EL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee-eeeee-hhhhhhhhhhhcchH-HHHh-hhhceEEEecCCCc-EE
Confidence 34456789999999999999999999999998763 32222 346688999987765 4433 44788999997743 34
Q ss_pred Eeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCC
Q 047260 629 HITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASG 705 (784)
Q Consensus 629 ~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~ 705 (784)
+.++ ..+..+.|-|..-.|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-.|.. |+|.+|.....
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 4443 67788999998777788888999999999999999999888899999999998888888775 49999999999
Q ss_pred ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 706 ~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+++..+..|.++|.++++.++|.|+++++.|..++|||++....+.......+...+++|..| ++.++....|.||.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeeh
Confidence 999999999999999999999999999999999999999987755222225567788888655 33444555788884
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.3e-11 Score=134.78 Aligned_cols=235 Identities=14% Similarity=0.220 Sum_probs=173.2
Q ss_pred CCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 047260 547 DHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF 625 (784)
Q Consensus 547 ~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~ 625 (784)
.|....+.|..+|||.|+ ++|.+.-.|++||+.+-. ++.-......|..+....+.-.-++.-..|..|-+..--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 578889999999999986 566778899999998643 22222223444444333332222333334666655443333
Q ss_pred eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 047260 626 LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMAS 704 (784)
Q Consensus 626 ~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t 704 (784)
.....+......++++.-..-|++++....|+-++++.|..+..|....+.+++|..++...+|++|+ ++.|..||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 33333444556677776666688888889999999999999999988889999999999999999999 55999999998
Q ss_pred CceEEEeccC------C-----CceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccC--CceEEEEEeCC--CC
Q 047260 705 GECIQELSSN------G-----NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHE--NIISALAQSPV--TG 769 (784)
Q Consensus 705 ~~~i~~l~~~------~-----~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~--~~V~slafspd--g~ 769 (784)
...+.++... . ..|+++.|+.+|-.+++|+.+|.|.|||++..+.+....|. -+|..+.|.+. .+
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 8766665432 1 24899999999999999999999999999999999777775 47889999765 34
Q ss_pred EEEEEECCCcEEEeC
Q 047260 770 MVASASHDSSVKLWK 784 (784)
Q Consensus 770 ~LaSgs~DG~V~IWd 784 (784)
.|+|+ +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 66665 456789997
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.42 E-value=6.5e-12 Score=125.72 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=183.7
Q ss_pred cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEee-cCCCceEEEEEcCC
Q 047260 440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIR-SRNSKVTCCHFSSD 518 (784)
Q Consensus 440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~-~H~~~V~~l~fspd 518 (784)
...+.-|.. .++++ .|...|.|.+|......+ .-.++ .|...|+.+..-|+
T Consensus 16 ~v~s~~fqa-~~rL~-sg~~~G~V~~w~lqt~r~--------------------------~~~~r~~g~~~it~lq~~p~ 67 (323)
T KOG0322|consen 16 SVTSVLFQA-NERLM-SGLSVGIVKMWVLQTERD--------------------------LPLIRLFGRLFITNLQSIPN 67 (323)
T ss_pred hheehhhcc-chhhh-cccccceEEEEEeecCcc--------------------------chhhhhhccceeeceeecCC
Confidence 334444433 34444 688889999997744331 11223 36777888888887
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC-----CC----EEEEEeCCC-eEEEEcCCCCcceeee-
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN-----SS----QLATASVDK-SVRLWDAANPNFCSQA- 587 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd-----g~----~Latgs~Dg-~I~IWdl~~~~~~~~~- 587 (784)
..|.+-+.|+.+.+|++.-...+. .|.-.++++.|.+- ++ .++.-+... .+.+-|..... .+..
T Consensus 68 -d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~ 142 (323)
T KOG0322|consen 68 -DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIA 142 (323)
T ss_pred -cchhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEcc
Confidence 468888999999999998644332 24445555555541 11 111111100 01222221111 0111
Q ss_pred ---ccCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeE-------------EeecCCeeEEEEecCCCEEEE
Q 047260 588 ---YTGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLCT-------------HITKGGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 588 ---~~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~~-------------~~~~~~v~~v~fsp~~~~Ll~ 649 (784)
-.+..+.++|..+.-+ ...++++|.++|.|.+||+.+...+ ..++.++.++.|.+....=+.
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis 222 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS 222 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence 1133456777775332 3456778889999999999875322 234578888999887777788
Q ss_pred EECCCcEEEEECCCC--e--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260 650 AASDKVVSIFDIETD--R--QTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFH 724 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t~--~--~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fs 724 (784)
++.+..+..|.+... . ....+.-.+..|..+.+-||++++++++ |+.|+||..++..++..++-|...|++++|+
T Consensus 223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence 888888999987643 1 2222333455688899999999999999 5599999999999999999999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEC
Q 047260 725 PSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 725 pdg~~L~s~s~dg~I~Iwdl 744 (784)
|+.+.+++++.|++|.+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=7.5e-11 Score=134.53 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=157.4
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-C--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-K--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 606 (784)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.. .+...........|+|++..
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCE
Confidence 577778765433 4555677889999999999998877653 2 5888899876521 12222333457899999998
Q ss_pred EEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEEE
Q 047260 607 LFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVNY 679 (784)
Q Consensus 607 ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~s 679 (784)
++++.+.++. |+++|+.+........ .......|+|+++.|+..+. + ..|+++|+.+++.... .........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 8887777775 7788887765544333 34567889999998887765 3 3577778877764432 212223345
Q ss_pred EEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEEe
Q 047260 680 ICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMTI 752 (784)
Q Consensus 680 l~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~~ 752 (784)
.+|+|||++|+..+. + .|.++|+.+++.. .+... .......|+|+++.|+..+.++ .|++++........+
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 789999999887653 2 6777888887643 33322 1223458999999988776653 478888865555566
Q ss_pred cccCCceEEEEEeC
Q 047260 753 AAHENIISALAQSP 766 (784)
Q Consensus 753 ~~h~~~V~slafsp 766 (784)
..+.+.+...+|+|
T Consensus 433 ~~~~g~~~~p~Wsp 446 (448)
T PRK04792 433 PAGQGEVKSPAWSP 446 (448)
T ss_pred cCCCCCcCCCccCC
Confidence 66677788888887
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.6e-11 Score=124.34 Aligned_cols=225 Identities=16% Similarity=0.204 Sum_probs=159.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----
Q 047260 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF---- 625 (784)
Q Consensus 550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~---- 625 (784)
..+..++|++.-..++++..|-.|+|||-.... ...........|+|++|-|.+...++.+. .+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 457789999977788999999999999987632 32323334567999999998877777776 566889977521
Q ss_pred ee----------EEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 047260 626 LC----------THITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV 692 (784)
Q Consensus 626 ~~----------~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg 692 (784)
.. +.... ..|+.+.|.+++..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 10 11111 46889999999999999887 7899999999987766554566788999999999999888
Q ss_pred eC-CeEEEEeCC-CCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC--CC----------ceE--------
Q 047260 693 SQ-NLVKVWSMA-SGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA--EN----------KSM-------- 750 (784)
Q Consensus 693 sd-d~I~IwDl~-t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~--~~----------~~~-------- 750 (784)
.- ...++|... +..+.+-..+ .+.|...+|+|+|++|+.+... .-++|.+. .. +..
T Consensus 257 t~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred cccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 84 499999544 4444433333 3489999999999986655543 22333321 11 011
Q ss_pred -Eecc----cCCceEEEEEeCCCCEEEEEECCC
Q 047260 751 -TIAA----HENIISALAQSPVTGMVASASHDS 778 (784)
Q Consensus 751 -~~~~----h~~~V~slafspdg~~LaSgs~DG 778 (784)
+... -.+.+.+++|.|.|.+||+.-..+
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 246789999999999999875543
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.1e-11 Score=121.80 Aligned_cols=125 Identities=19% Similarity=0.405 Sum_probs=95.1
Q ss_pred EEEEECCC-CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEE
Q 047260 656 VSIFDIET-DRQTHSLQG-HAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL 730 (784)
Q Consensus 656 I~IwDl~t-~~~i~~l~~-h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L 730 (784)
..+|.++. ...+..+.- ..++|.+++|+|+|+.|++.. ...|.+||++ ++.+..+. ...++.+.|+|+|++|
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEE
Confidence 44444422 233334432 445799999999999877654 2389999997 66666664 4677899999999999
Q ss_pred EEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC------CCcEEEeC
Q 047260 731 LVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH------DSSVKLWK 784 (784)
Q Consensus 731 ~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~------DG~V~IWd 784 (784)
++++.+ |.|.+||+.+.+.+....|.. ++.++|+|||++|+++.. |+.++||+
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 998754 679999999888886666665 789999999999999864 78889985
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.3e-11 Score=121.60 Aligned_cols=156 Identities=14% Similarity=0.310 Sum_probs=114.2
Q ss_pred EEEEEccCCCEEEEEeC----------CCeEEEEcCCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEE
Q 047260 553 TDVRFRPNSSQLATASV----------DKSVRLWDAANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCF-CDNDNEIQYW 620 (784)
Q Consensus 553 t~i~fspdg~~Latgs~----------Dg~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~s-gs~dg~I~iw 620 (784)
..+.|+++|++|++-.. -+...||.++........+. ...++|.+++|+|++..++++ |..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988765433 13456666644332333332 344579999999999876554 4467899999
Q ss_pred eCCCCeeEEeecCCeeEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----
Q 047260 621 SINPFLCTHITKGGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS---- 693 (784)
Q Consensus 621 Dl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs---- 693 (784)
|++...........+..+.|+|+|+++++++. .|.|.+||+++.+.+..+. | ..++.++|+|+|++|+++.
T Consensus 89 d~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 89 DVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred cCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccc
Confidence 99844444444567889999999999999885 4679999999888887765 3 3478999999999999876
Q ss_pred ---CCeEEEEeCCCCceEEEe
Q 047260 694 ---QNLVKVWSMASGECIQEL 711 (784)
Q Consensus 694 ---dd~I~IwDl~t~~~i~~l 711 (784)
|+.++||++. |+.+.+.
T Consensus 167 ~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 167 LRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eeccccEEEEEec-CeEeEec
Confidence 4488999984 6665544
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.6e-11 Score=126.46 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=176.5
Q ss_pred CCCCeEEEEEccCC--CEEEEEeCCCeEEEEcCCCCcceee-----eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 047260 548 HKSVVTDVRFRPNS--SQLATASVDKSVRLWDAANPNFCSQ-----AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW 620 (784)
Q Consensus 548 h~~~It~i~fspdg--~~Latgs~Dg~I~IWdl~~~~~~~~-----~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw 620 (784)
....|+.++|.-++ ..|+.++.|..+..+.+........ .......+|..+.... ..+++|..+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 34567777777644 3455555666777777765442211 2334456676666542 267788899999999
Q ss_pred eCCCC-----eeE-EeecCCeeEEEEecCCCEEEE-EECC--CcEEEEECCCCeEEEEEeCC---------CCCEEEEEE
Q 047260 621 SINPF-----LCT-HITKGGTAQVRFQPRIGQLLA-AASD--KVVSIFDIETDRQTHSLQGH---------AELVNYICW 682 (784)
Q Consensus 621 Dl~~~-----~~~-~~~~~~v~~v~fsp~~~~Ll~-~s~D--g~I~IwDl~t~~~i~~l~~h---------~~~V~sl~~ 682 (784)
..... ..+ .....++..+.-++...++++ |+.. ..+.|||++..+.+..-+.- .-.++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 98732 222 222356667777777666666 6777 88999999988766554321 124577888
Q ss_pred cCC--CCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccC
Q 047260 683 DTN--GDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHE 756 (784)
Q Consensus 683 spd--g~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~ 756 (784)
-+. ...|++++.- .|++||.+.+ +++..|.....++.++...|++++|+++..-+.+..||++.++.. .+.+-.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 877 7788888754 9999999976 688899888999999999999999999999999999999999887 467889
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 757 NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 757 ~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.|++|..+|...+|++||-|..|||+|
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEee
Confidence 9999999999999999999999999997
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=1.9e-11 Score=141.93 Aligned_cols=265 Identities=15% Similarity=0.209 Sum_probs=185.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE------DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
|-+.+++..+-. +||+.| ..-.|.+||+.++..+..+. .|...=.-- -.+.+++++..-+.+..=+..
T Consensus 6 ~~~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence 334455555544 566654 45569999999877665443 330000000 023355555544444333322
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeE-------EEEecCCCEEEEEEC
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQ-------VRFQPRIGQLLAAAS 652 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~-------v~fsp~~~~Ll~~s~ 652 (784)
.. .... ..+.|....+..+.. .++....+..+.+||.............-.+ +.++++.-++++|+.
T Consensus 80 ~~--~~~~---~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 80 NQ--IIER---FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred hh--hhhh---ccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 11 1111 222333333333333 5666667889999999876665554433222 234566667888888
Q ss_pred CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEE-EeccCCCceEEEEEecCCCEE
Q 047260 653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQ-ELSSNGNQFHSCVFHPSYSTL 730 (784)
Q Consensus 653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~-~l~~~~~~I~sl~fspdg~~L 730 (784)
-+.|.+|+....+....+.+|++.|.++.|+.||+++++.+|| ++++|++.+.+.+. ..-+|...|..++|+|+ .|
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 9999999998554444688999999999999999999999988 99999999987766 66789999999999999 89
Q ss_pred EEEECCCeEEEEECCCCceEEecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 731 LVVGGISSLELWNMAENKSMTIAAHE-NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 731 ~s~s~dg~I~Iwdl~~~~~~~~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++++.|-+.++|+.+......+..|. ..|..++..++...++|++.||.+++||
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999999987766665677775 4699999999999999999999999996
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=3.3e-11 Score=124.71 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=184.5
Q ss_pred cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNM-DTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKS 572 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~ 572 (784)
+.+..+..++||.+.|++...-|..+-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 455567788999999999999998888999999999999954 3444433332 23578999999999999999999999
Q ss_pred EEEEcCCCC---cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEE
Q 047260 573 VRLWDAANP---NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQL 647 (784)
Q Consensus 573 I~IWdl~~~---~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~L 647 (784)
+.-+.+... -...+.+..|...|..+.|+.... .+++++.|..+.---.+.+..+ ..+....+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 988876532 224566678999999999987655 5666666665543323322221 111122222222221 55
Q ss_pred EEEECCCcEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccCCCceEEEEE
Q 047260 648 LAAASDKVVSIFDIE--TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSNGNQFHSCVF 723 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~--t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~~~~I~sl~f 723 (784)
++|...|.|.+..+. .-.++..+.+|.+.+++++|.+...+|+++..+ .|.+||+.-.+ ...++.+|...|..+..
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 666666777665544 446788899999999999999999999999977 99999997654 45677788899999988
Q ss_pred ecCCCEEEEEECCCeEEEEECCC
Q 047260 724 HPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 724 spdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
.+.-..+++++.||.|.+|+++.
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhheeeeeccCCCeEEEEeccc
Confidence 88888999999999999999864
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.1e-10 Score=129.05 Aligned_cols=219 Identities=17% Similarity=0.189 Sum_probs=149.4
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEE-EeCCC--eEEE
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT-ASVDK--SVRL 575 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Lat-gs~Dg--~I~I 575 (784)
.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+. .+.+| .|.+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 344577789999999999998876543 369999999876543 3334455667999999998874 44455 5888
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEE
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAA 651 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s 651 (784)
||+.++. ...+..+........|+|++..++++...++ .|+++|+.++....... .......|+|+++.++...
T Consensus 272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 8998765 2334455556677899999998887776554 57777887665443322 2234568999999998877
Q ss_pred CC-C--cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260 652 SD-K--VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFH 724 (784)
Q Consensus 652 ~D-g--~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fs 724 (784)
.+ + .|.++|+.+++... +.. ........|+|||+.|+..+. + .|.++++. +.....+..+.+.+...+|+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred ccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence 53 3 58889998876433 322 222235689999999887663 2 67788875 44444555555566677777
Q ss_pred cC
Q 047260 725 PS 726 (784)
Q Consensus 725 pd 726 (784)
|-
T Consensus 427 ~~ 428 (430)
T PRK00178 427 PY 428 (430)
T ss_pred CC
Confidence 63
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.2e-10 Score=129.40 Aligned_cols=218 Identities=17% Similarity=0.200 Sum_probs=146.8
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEE-EeCCCe--EEEE
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT-ASVDKS--VRLW 576 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Lat-gs~Dg~--I~IW 576 (784)
+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+.|+. .+.++. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 34456678999999999988876543 258999998876533 2222334457899999998765 455664 7777
Q ss_pred cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEee-c-CCeeEEEEecCCCEEEEEEC
Q 047260 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHIT-K-GGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~-~-~~v~~v~fsp~~~~Ll~~s~ 652 (784)
|+.++. ...+..+...+...+|+|++..+++++..++ .|+++|+.+.+..... . ......+|+|+++.|+..+.
T Consensus 292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 887755 2334445556778899999998888776555 4666677766544332 2 22345689999999887765
Q ss_pred -CC--cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260 653 -DK--VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHP 725 (784)
Q Consensus 653 -Dg--~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp 725 (784)
++ .|.++|+.+++... +... .......|+|||+.|+..+. + .+++++. ++.....+..+...+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 33 46667888776432 3222 12234579999998877552 2 5788886 5666666766666677778877
Q ss_pred C
Q 047260 726 S 726 (784)
Q Consensus 726 d 726 (784)
-
T Consensus 447 ~ 447 (448)
T PRK04792 447 F 447 (448)
T ss_pred C
Confidence 3
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.8e-10 Score=125.84 Aligned_cols=236 Identities=17% Similarity=0.145 Sum_probs=157.8
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCE--E-EEEeCCC--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ--L-ATASVDK--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK 603 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~--L-atgs~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~ 603 (784)
+.|.+.|.+.+.. ..+......+..-+|+|||+. + ++...+| .|.+.++.++.. ..+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 4677778775444 445556667788899999975 2 2443443 577778876652 222333445567899999
Q ss_pred CCcEEEEEeCCC----eEEEEeCCC---CeeEEeec---CCeeEEEEecCCCEEEEEEC-CCc--EEEEECCC-CeEEEE
Q 047260 604 KTDLFCFCDNDN----EIQYWSINP---FLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKV--VSIFDIET-DRQTHS 669 (784)
Q Consensus 604 ~~~ll~sgs~dg----~I~iwDl~~---~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~--I~IwDl~t-~~~i~~ 669 (784)
|..++++.+.+| .+.+|++.. ........ +.....+|+|+|+.|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775444 344467654 22222222 23456899999998887764 564 44445542 233444
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEE
Q 047260 670 LQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELW 742 (784)
Q Consensus 670 l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iw 742 (784)
+..+...+....|+|||+.|+..+. + .|.+||+.+++... +......+....|+||++.|+..+.+ ..|++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 5545566778999999998887653 2 79999999887643 33333456788999999988866543 479999
Q ss_pred ECCCCceEEecccCCceEEEEEeCCC
Q 047260 743 NMAENKSMTIAAHENIISALAQSPVT 768 (784)
Q Consensus 743 dl~~~~~~~~~~h~~~V~slafspdg 768 (784)
|+.+++...+....+.+...+|+|-.
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCCC
Confidence 99988877776666777888998753
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=3.8e-09 Score=114.92 Aligned_cols=254 Identities=10% Similarity=0.091 Sum_probs=167.5
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC----------CCeEEEEcCCCCcceeeeccCC------C
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV----------DKSVRLWDAANPNFCSQAYTGH------S 592 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~----------Dg~I~IWdl~~~~~~~~~~~~h------~ 592 (784)
+.|.|.|..+++.+..+..-..+-. + ++||++.|+++.. +..|.+||+.+.+.......+. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8899999999999888865443332 4 9999999888765 7899999999987443333221 1
Q ss_pred CCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC-CeE-EEE
Q 047260 593 SPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET-DRQ-THS 669 (784)
Q Consensus 593 ~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t-~~~-i~~ 669 (784)
.....++++|+++.++++--. +..|.+.|+.+.+.+....-+.+...|-.......+-|.||......+.. ++. ...
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 223478999999988777645 89999999999888877664333222222222223334555544443332 121 111
Q ss_pred ---EeCCCCCEEE-EEEcC-CCCEEEEEeCCeEEEEeCCCC-----ceEEEeccC-------CCceEEEEEecCCCEEEE
Q 047260 670 ---LQGHAELVNY-ICWDT-NGDYLASVSQNLVKVWSMASG-----ECIQELSSN-------GNQFHSCVFHPSYSTLLV 732 (784)
Q Consensus 670 ---l~~h~~~V~s-l~~sp-dg~~Lasgsdd~I~IwDl~t~-----~~i~~l~~~-------~~~I~sl~fspdg~~L~s 732 (784)
+.....++.. -.|.+ +|+++++..++.|.+.|+... +.+..+... ...+.-++++++++.+++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 1111111100 03345 899998888899999996443 333332211 123344999999999888
Q ss_pred EE----------CCCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 047260 733 VG----------GISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSSVKLWK 784 (784)
Q Consensus 733 ~s----------~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~V~IWd 784 (784)
.. ..+.|.++|..+++.+....-...+..++++||++ +|++.+ .++.|.|.|
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 53 12479999999999986665667899999999999 888776 577788875
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=6.7e-10 Score=125.56 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=145.2
Q ss_pred CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEE--eecCCeeEEEEecCCCE
Q 047260 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFLCTH--ITKGGTAQVRFQPRIGQ 646 (784)
Q Consensus 571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~~~~--~~~~~v~~v~fsp~~~~ 646 (784)
..|.++|..... .+.+..+...+.+..|+|++..++++...+ ..|++||+.++.... .+.+.+..++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 344445666789999999999777665443 579999998764433 34455677899999998
Q ss_pred EEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceE
Q 047260 647 LLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFH 719 (784)
Q Consensus 647 Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~ 719 (784)
|+.... + ..|++||+.++... .+..+........|+|+|+.|+..++. .|+++|+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 876543 3 46899999877543 344455555677999999988776632 6888898877643 4444556677
Q ss_pred EEEEecCCCEEEEEECCC---eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCC
Q 047260 720 SCVFHPSYSTLLVVGGIS---SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS 778 (784)
Q Consensus 720 sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG 778 (784)
...|+|++++|+.++.++ .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 889999999999988875 799999988765544432 2345678999999888877654
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.7e-08 Score=106.18 Aligned_cols=260 Identities=13% Similarity=0.133 Sum_probs=179.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCC--Cceee--ecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEc
Q 047260 506 RNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDT--LQTES--TPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWD 577 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t--~~~~~--~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWd 577 (784)
+.+.++-++|+|+.++|.++.. +|.|..|.++. |+... ....-..+-+.+++++++++|+++.. -|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 5677899999999999988765 47788887764 44322 22222334488999999999999976 47899999
Q ss_pred CCCCcceee--eccCCCCC----------eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------ecCCeeEEE
Q 047260 578 AANPNFCSQ--AYTGHSSP----------IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------TKGGTAQVR 639 (784)
Q Consensus 578 l~~~~~~~~--~~~~h~~~----------V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------~~~~v~~v~ 639 (784)
+.....+.. ....|.+. +.+..+.|++++++++.-.--.|.+|++..+..... -..+...|.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence 866332211 12234333 888999999986666655667899999985443322 125668899
Q ss_pred EecCCCEEEEEEC-CCcEEEEECCCC-eEEEEEeC---------CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCC--
Q 047260 640 FQPRIGQLLAAAS-DKVVSIFDIETD-RQTHSLQG---------HAELVNYICWDTNGDYLASVSQN--LVKVWSMAS-- 704 (784)
Q Consensus 640 fsp~~~~Ll~~s~-Dg~I~IwDl~t~-~~i~~l~~---------h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t-- 704 (784)
|+|++++.++.++ +++|.+|..... ..+..+.. .......|..++||++|.++..+ .|.+|.+..
T Consensus 198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 9999999988888 999999998873 22222221 23466788999999999998854 888887764
Q ss_pred Cc--eEEEeccCCCceEEEEEecCCCEEEEEECCC-eEEEEECC--CCceEEe--cccCCceEEEEEe
Q 047260 705 GE--CIQELSSNGNQFHSCVFHPSYSTLLVVGGIS-SLELWNMA--ENKSMTI--AAHENIISALAQS 765 (784)
Q Consensus 705 ~~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg-~I~Iwdl~--~~~~~~~--~~h~~~V~slafs 765 (784)
++ .+.....+....+...|++.+++|+++..++ .|.+|.++ +++...+ ........||.|.
T Consensus 278 g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 278 GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 2223334445578899999999999999875 68888665 4443322 2334445566654
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=2.3e-09 Score=116.29 Aligned_cols=272 Identities=16% Similarity=0.191 Sum_probs=190.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---------------CeEEEEECCCCceeeecCCCCCC--eE-EEEEccCCCEEEEEe
Q 047260 507 NSKVTCCHFSSDGKLLASSGHD---------------RKVVLWNMDTLQTESTPEDHKSV--VT-DVRFRPNSSQLATAS 568 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~D---------------g~I~IWd~~t~~~~~~l~~h~~~--It-~i~fspdg~~Latgs 568 (784)
...|..+.|+|.++||.+=... ..+.|||+.++..+..+..-..+ .. -+.|+-+.+++|-.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 3459999999999999985543 34999999999999998776665 55 68888888877655
Q ss_pred CCCeEEEEcCCCCcceeeeccCC-CCCeEEEEEcCCCCc-EEEE-----EeCCCeEEEEeCCCCeeEEe---ecCCeeEE
Q 047260 569 VDKSVRLWDAANPNFCSQAYTGH-SSPIMSLDFHPKKTD-LFCF-----CDNDNEIQYWSINPFLCTHI---TKGGTAQV 638 (784)
Q Consensus 569 ~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~sl~~sp~~~~-ll~s-----gs~dg~I~iwDl~~~~~~~~---~~~~v~~v 638 (784)
....++|+++ ++......+..- ...|....|+|.++. .||. ....+.+++|.+.....+.. ++..-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3356999997 433222222211 356888889987432 2232 24577899999875444433 34555678
Q ss_pred EEecCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC-eEEEEeCCC
Q 047260 639 RFQPRIGQLLAAAS-----------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QN-LVKVWSMAS 704 (784)
Q Consensus 639 ~fsp~~~~Ll~~s~-----------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd-~I~IwDl~t 704 (784)
.|++.|.+|++-.. +..++|+++....+ .....-.++|...+|.|.++.+++++ .. .+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 89999988765321 35688888874433 33335688999999999998887766 33 899999987
Q ss_pred CceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE------
Q 047260 705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS------ 775 (784)
Q Consensus 705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs------ 775 (784)
. .... .....=+.+.|+|.++++++++-| |.|.+||......+.-.-......-+.|+||+.++.+..
T Consensus 308 N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 308 N-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred c-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccc
Confidence 6 3333 334445778999999999998877 689999988776553221222344567999999887763
Q ss_pred CCCcEEEeC
Q 047260 776 HDSSVKLWK 784 (784)
Q Consensus 776 ~DG~V~IWd 784 (784)
.|..|+|||
T Consensus 385 ~Dn~i~l~~ 393 (561)
T COG5354 385 VDNSIKLWD 393 (561)
T ss_pred cCcceEEEE
Confidence 478899996
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.1e-10 Score=122.06 Aligned_cols=247 Identities=13% Similarity=0.224 Sum_probs=173.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC--CEEEE-----EeCCCeEEEEcCCCCcc
Q 047260 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS--SQLAT-----ASVDKSVRLWDAANPNF 583 (784)
Q Consensus 511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg--~~Lat-----gs~Dg~I~IWdl~~~~~ 583 (784)
++..|+.|..+.| --..+.|.+|++.+.+.+.. .-|...|+.+.++|.+ ..+|+ .+.-..|+||.+.....
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 6888988876433 23356799999987544332 2478889999999963 23333 24456899998873221
Q ss_pred ----eeeeccCCCCCeEEEEEcCCCCcEEEEEeC--C---------CeEEEEeCCCCeeEEee--cCCeeEEEEecCCCE
Q 047260 584 ----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDN--D---------NEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQ 646 (784)
Q Consensus 584 ----~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~--d---------g~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~ 646 (784)
..+.| ....-..+.|++-+..+|+..+. | ..+++.+++...+...+ .++|.++.|+|++..
T Consensus 207 ~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11112 12334567888888777665543 2 37888888855555444 489999999999988
Q ss_pred EEEEEC--CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCCCCceEEEeccCCCceEE
Q 047260 647 LLAAAS--DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----QNLVKVWSMASGECIQELSSNGNQFHS 720 (784)
Q Consensus 647 Ll~~s~--Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~t~~~i~~l~~~~~~I~s 720 (784)
++++.. -..+.|||++ +.++..+ ..++-+++-|+|.|++|+.++ .|.|.|||+.+.+++..+.... .+-
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~ 359 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV 359 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence 777654 6899999987 5555555 567788999999999998877 3389999999999988887654 466
Q ss_pred EEEecCCCEEEEEEC------CCeEEEEECCCCceEEecccCCceEEEEEeCC
Q 047260 721 CVFHPSYSTLLVVGG------ISSLELWNMAENKSMTIAAHENIISALAQSPV 767 (784)
Q Consensus 721 l~fspdg~~L~s~s~------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspd 767 (784)
+.|+|||.+|++++. |+.++||++...... ..........++|-|.
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~-~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH-EKMFKSELLQVEWRPF 411 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecCceee-hhhhhHhHhheeeeec
Confidence 899999999999987 578999998655433 1111224566666653
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=3.7e-11 Score=129.96 Aligned_cols=279 Identities=15% Similarity=0.211 Sum_probs=193.8
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDK 571 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg 571 (784)
.+..+.+|...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4566889999999998877888899999999999999863 33566788999999999999998888775 88
Q ss_pred eEEEEcCCCCcceeeecc-CCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeEEeec--------CCeeEEEE
Q 047260 572 SVRLWDAANPNFCSQAYT-GHSSPIMSLDFHP--KKTDLFCFCDNDNEIQYWSINPFLCTHITK--------GGTAQVRF 640 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--------~~v~~v~f 640 (784)
.|++||.--+........ ...+.+..+...+ +...+++.|+...+|+++|.+....+...+ ..+.++++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999766553322221 1122233333333 334455556889999999999765444332 34678999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EeCCCCceEEEeccCCCce
Q 047260 641 QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKV-WSMASGECIQELSSNGNQF 718 (784)
Q Consensus 641 sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~I-wDl~t~~~i~~l~~~~~~I 718 (784)
.+.|++++++-+.|.|.+.|.++|+.+..+....-....++- |....|+... +.++.| |...++......+....+.
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 999999999999999999999999998887755544444443 4455555544 558888 8877776555554433322
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCC-------ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 719 HSCVFHPSYSTLLVVGGISSLELWNMAEN-------KSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~-------~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
.- .-.-|..+++......+.+|.-... .++......+..++++.-|-+.-+..|+..|.|.+
T Consensus 964 hf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 HF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11 1123445666666667777742211 12223345677888998888887888888888875
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=8.5e-10 Score=122.83 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=196.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------ceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---------------QTESTPEDHKSVVTDVRFRPNSSQLATASVD 570 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---------------~~~~~l~~h~~~It~i~fspdg~~Latgs~D 570 (784)
.+....|++|+....|+|+|+.||.++|..+.+. ..-.++.+|.+.|.-+.|+.+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4456899999999999999999999999987642 1224567999999999999998899999999
Q ss_pred CeEEEEcCCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-eec-CCeeEEEEecCCCEE
Q 047260 571 KSVRLWDAANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-ITK-GGTAQVRFQPRIGQL 647 (784)
Q Consensus 571 g~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-~~~-~~v~~v~fsp~~~~L 647 (784)
|.|.||-+-.+..+...+. ...+.|.+++|+.+|. -++....||.|.+=.++..+... .++ .....+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 9999999988776554443 4557789999999988 56677889998887776544321 122 234568899999999
Q ss_pred EEEECCCcEEEEECCCC-------eEEEE----EeCCCCCEEEEEEc--------CCCCEEEEEeCC-eEEEEeCCCCce
Q 047260 648 LAAASDKVVSIFDIETD-------RQTHS----LQGHAELVNYICWD--------TNGDYLASVSQN-LVKVWSMASGEC 707 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t~-------~~i~~----l~~h~~~V~sl~~s--------pdg~~Lasgsdd-~I~IwDl~t~~~ 707 (784)
+.+-..|.+.+||.... .+... +......|..++|. |+...|+++-++ .+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 88888999999997542 11111 12233346677774 466677777755 676665444322
Q ss_pred EEEeccCCCceEEEEEecCCCEEEEEECCC---------eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCC
Q 047260 708 IQELSSNGNQFHSCVFHPSYSTLLVVGGIS---------SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS 778 (784)
Q Consensus 708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---------~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG 778 (784)
...+.. +-.+....|+++|..|++++.+. .|.+|..-....-++......|++++|-..|-.++.+ .|+
T Consensus 252 Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vds 329 (1189)
T KOG2041|consen 252 PVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDS 329 (1189)
T ss_pred CeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecc
Confidence 222222 26678899999999999998752 5667665544444677777889999998776555554 355
Q ss_pred cEE
Q 047260 779 SVK 781 (784)
Q Consensus 779 ~V~ 781 (784)
.|.
T Consensus 330 fiy 332 (1189)
T KOG2041|consen 330 FIY 332 (1189)
T ss_pred eEE
Confidence 554
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=2.6e-08 Score=108.44 Aligned_cols=231 Identities=11% Similarity=0.105 Sum_probs=148.5
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEECCCCceeeecCCC-------CCCeEEEEEccCCCEEEEEeC--CCeEEE
Q 047260 515 FSSDGKLLASSGH----------DRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPNSSQLATASV--DKSVRL 575 (784)
Q Consensus 515 fspdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspdg~~Latgs~--Dg~I~I 575 (784)
+||||+.|+++.. +..|.|||..+++.+..+..- ......++++|||++|++... +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877765 788999999999999888632 223347899999999998763 689999
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-Cee----EEeecC---Ce-eEEEEec-CCC
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLC----THITKG---GT-AQVRFQP-RIG 645 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~----~~~~~~---~v-~~v~fsp-~~~ 645 (784)
.|+.+.+.....-.+ +...-...+ +..++ +.| .||......+.. ++. ...+.. .+ ..-.|.+ ++.
T Consensus 133 vD~~~~kvv~ei~vp--~~~~vy~t~-e~~~~-~~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAFVRMMDVP--DCYHIFPTA-NDTFF-MHC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcEEEEEeCC--CCcEEEEec-CCccE-EEe-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 999997743333221 111111111 11111 111 233333322221 110 001111 00 0003455 677
Q ss_pred EEEEEECCCcEEEEECCCC-----eEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEeC
Q 047260 646 QLLAAASDKVVSIFDIETD-----RQTHSLQG-------HAELVNYICWDTNGDYLASVS-----------QNLVKVWSM 702 (784)
Q Consensus 646 ~Ll~~s~Dg~I~IwDl~t~-----~~i~~l~~-------h~~~V~sl~~spdg~~Lasgs-----------dd~I~IwDl 702 (784)
++++... |.|++.|+... +.+..+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 7766666 99999996443 33332221 223344599999999888743 148999999
Q ss_pred CCCceEEEeccCCCceEEEEEecCCC-EEEEEE-CCCeEEEEECCCCceEEe
Q 047260 703 ASGECIQELSSNGNQFHSCVFHPSYS-TLLVVG-GISSLELWNMAENKSMTI 752 (784)
Q Consensus 703 ~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s-~dg~I~Iwdl~~~~~~~~ 752 (784)
.+++.+..+.. +..+..++++||++ +|++.. .++.|.++|..+++.+..
T Consensus 287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 99999998875 35789999999999 777666 467899999999987743
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=3.5e-09 Score=120.01 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=139.6
Q ss_pred CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc--EEEEEeCCC--eEEEEeCCCCee--EEeecCCeeEEEEecCC
Q 047260 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD--LFCFCDNDN--EIQYWSINPFLC--THITKGGTAQVRFQPRI 644 (784)
Q Consensus 571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~--ll~sgs~dg--~I~iwDl~~~~~--~~~~~~~v~~v~fsp~~ 644 (784)
+.|.+.|.+... .+.+......+.+-.|+||+.. ++++...++ .|++.++..+.. +..+.+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 356777776544 2334444566778899999976 333555444 578888876543 33345666678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCC-CceEEEe
Q 047260 645 GQLLAAAS-DK----VVSIFDIETD---RQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMAS-GECIQEL 711 (784)
Q Consensus 645 ~~Ll~~s~-Dg----~I~IwDl~t~---~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t-~~~i~~l 711 (784)
+.|+.... +| .+.+|++..+ +.......+.......+|+|||+.|+..++ + .|.++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99887664 22 3444676652 333333333344567899999998887663 3 466666643 3334455
Q ss_pred ccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC-C--CcEEEe
Q 047260 712 SSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH-D--SSVKLW 783 (784)
Q Consensus 712 ~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~-D--G~V~IW 783 (784)
......+....|+|||+.|+..+.+ ..|.+||+.+++...+......+....|+|||+.|+.... + ..|.+|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 5555567788999999999887654 3699999999988766655556788999999998775443 2 345554
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=1.6e-08 Score=113.01 Aligned_cols=253 Identities=12% Similarity=0.020 Sum_probs=160.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe--
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI-- 595 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V-- 595 (784)
++..+++++.++.|..+|..+++.+...... ..+.+.... .+..++.++.++.|..||.++++..-. +......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCceee
Confidence 4667888889999999999999988776433 222221111 345677788899999999998773322 22111111
Q ss_pred ---EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--C-----e---eEEEEe--cCCCEEEEEECCCcEEEEE
Q 047260 596 ---MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--G-----T---AQVRFQ--PRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 596 ---~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~-----v---~~v~fs--p~~~~Ll~~s~Dg~I~IwD 660 (784)
.+..+. + . .++.+..++.+..+|.++++.+..... . + ..+.-+ -.++.+++++.+|.++.||
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111121 2 2 566777889999999988766543221 0 0 001001 1356888888999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCe
Q 047260 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISS 738 (784)
Q Consensus 661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~ 738 (784)
.++++.+...... ....... ++..+++++ ++.|..+|..+++.+....... ..+..... .+..|++++.+|.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence 9999887766521 1122222 344555544 5699999999998887663222 22222223 3568999999999
Q ss_pred EEEEECCCCceE-EecccCCce-EEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 739 LELWNMAENKSM-TIAAHENII-SALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 739 I~Iwdl~~~~~~-~~~~h~~~V-~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|..|.
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 999999999887 444444333 233333 3 4588899999998773
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=3.6e-08 Score=103.86 Aligned_cols=256 Identities=13% Similarity=0.158 Sum_probs=176.5
Q ss_pred CCeEEEEECCCCc--e-eeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCC--Ccce-eeeccCCCCCeEEE
Q 047260 528 DRKVVLWNMDTLQ--T-ESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAAN--PNFC-SQAYTGHSSPIMSL 598 (784)
Q Consensus 528 Dg~I~IWd~~t~~--~-~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~--~~~~-~~~~~~h~~~V~sl 598 (784)
+.-|++|++++.. . ...+-.+.+.++-|+|+|+.++|+++..+ |.|..|.++. ++.. +........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3559999988322 1 11223567889999999999999998664 6788887765 3311 11111222344889
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCC-Ce-----eEEeecC----------CeeEEEEecCCCEEEEEEC-CCcEEEEEC
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINP-FL-----CTHITKG----------GTAQVRFQPRIGQLLAAAS-DKVVSIFDI 661 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~-~~-----~~~~~~~----------~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl 661 (784)
++++++..++++....|.|.++-++. +. .+..+.+ ++....+.|++++|++... -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998888888899999998864 11 1112222 3677889999999999887 478999999
Q ss_pred CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCC----ceEEEec------cCCCceEEEEEecC
Q 047260 662 ETDRQTHSLQ---GHAELVNYICWDTNGDYLASVS--QNLVKVWSMASG----ECIQELS------SNGNQFHSCVFHPS 726 (784)
Q Consensus 662 ~t~~~i~~l~---~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~----~~i~~l~------~~~~~I~sl~fspd 726 (784)
..++....-. .....-+.|.|+|++++..+.. +++|.+|..... +.+..+. ........+.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2444568899999999988877 459999998773 2233322 12345678899999
Q ss_pred CCEEEEEECC-CeEEEEECCCC-ceEEe----cccCCceEEEEEeCCCCEEEEEECC-CcEEEe
Q 047260 727 YSTLLVVGGI-SSLELWNMAEN-KSMTI----AAHENIISALAQSPVTGMVASASHD-SSVKLW 783 (784)
Q Consensus 727 g~~L~s~s~d-g~I~Iwdl~~~-~~~~~----~~h~~~V~slafspdg~~LaSgs~D-G~V~IW 783 (784)
|++|+++... ..|.+|.+... ..+.+ ..+....+.+.|++.+++|+++..| ..|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9998888764 47888877654 22322 2334447899999999999988764 346665
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.8e-09 Score=117.85 Aligned_cols=185 Identities=18% Similarity=0.236 Sum_probs=147.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecCC---CCCCeEEEEEc--------------------cCCCEEEEEeCCCeE
Q 047260 517 SDGKLLASSGHDRKVVLWNMDTLQTESTPED---HKSVVTDVRFR--------------------PNSSQLATASVDKSV 573 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~It~i~fs--------------------pdg~~Latgs~Dg~I 573 (784)
|-..++|....||.++|||..+++....+.. -++..++..|. .+...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999998877666542 23455666663 123467888889999
Q ss_pred EEEcCCCCcceeeec-cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260 574 RLWDAANPNFCSQAY-TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~-~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~ 649 (784)
.+|++..++...+.. ..|.+.|.++.++.+-. .|.+++.|+.+..|+......++..+ ..+..++++||+..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877444333 47999999999886654 88899999999999999888887776 45788999999998888
Q ss_pred EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEeCCC
Q 047260 650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN-----GDYLASVS--QNLVKVWSMAS 704 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd-----g~~Lasgs--dd~I~IwDl~t 704 (784)
++ +.|++||+++++.+..|.+|.++|+++.|..+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 77 78999999999999999999999999999876 77777765 33666775543
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.4e-09 Score=112.82 Aligned_cols=256 Identities=16% Similarity=0.278 Sum_probs=170.1
Q ss_pred CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260 438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS 517 (784)
Q Consensus 438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp 517 (784)
..+++++.|...+++ |++|..+|.|.+|-......+...+-+.. .+....|.-+..+. -..+|..+.|.+
T Consensus 25 adiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~f--------qshepEFDYLkSle-ieEKinkIrw~~ 94 (433)
T KOG1354|consen 25 ADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEF--------QSHEPEFDYLKSLE-IEEKINKIRWLD 94 (433)
T ss_pred hcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeee--------eccCcccchhhhhh-hhhhhhhceecC
Confidence 456777888555555 45799999999986554443222111110 01111111111111 346799999998
Q ss_pred CCC--EEEEEeCCCeEEEEECCCCcee-----------------------------------eec-CCCCCCeEEEEEcc
Q 047260 518 DGK--LLASSGHDRKVVLWNMDTLQTE-----------------------------------STP-EDHKSVVTDVRFRP 559 (784)
Q Consensus 518 dg~--~Lasgs~Dg~I~IWd~~t~~~~-----------------------------------~~l-~~h~~~It~i~fsp 559 (784)
++. .++..+.|.+|++|.+...... +.+ ..|.-.|.+|.++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 665 5677788999999987531110 011 25888899999999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcceeee--ccC-----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEE--
Q 047260 560 NSSQLATASVDKSVRLWDAANPNFCSQA--YTG-----HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTH-- 629 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~--~~~-----h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~-- 629 (784)
|...++++ .|=.|.+|+++-......+ +.. -..-|++..|+|....+|+-++..|.|++.|++... |..
T Consensus 175 D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 99888886 5678999998754322221 122 234588999999999899999999999999998321 110
Q ss_pred -e---------------ecCCeeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEeCCCC------------CE---
Q 047260 630 -I---------------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHAE------------LV--- 677 (784)
Q Consensus 630 -~---------------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~~------------~V--- 677 (784)
. .-..|..+.|+..|+++++-.. -+|++||+. ..+++.++..|.. .|
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 0 1145678899999998887544 789999994 4566666654432 22
Q ss_pred EEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 047260 678 NYICWDTNGDYLASVSQN-LVKVWSMASG 705 (784)
Q Consensus 678 ~sl~~spdg~~Lasgsdd-~I~IwDl~t~ 705 (784)
..++|+.++.++++|+-. .+++|++..|
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCCCC
Confidence 457899999999999955 9999997655
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=4.1e-09 Score=114.41 Aligned_cols=270 Identities=18% Similarity=0.195 Sum_probs=187.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--------------
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK-------------- 571 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg-------------- 571 (784)
-.-++..++|||.|.+|++....+ |.+|+-..+..+..+. | ..|..+.|+|.++||.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 445688999999999999877666 9999988777655553 3 4689999999999999865433
Q ss_pred -eEEEEcCCCCcceeeeccCCCCC--eE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCC-e--eEEeec-CCeeEEEEecC
Q 047260 572 -SVRLWDAANPNFCSQAYTGHSSP--IM-SLDFHPKKTDLFCFCDNDNEIQYWSINPF-L--CTHITK-GGTAQVRFQPR 643 (784)
Q Consensus 572 -~I~IWdl~~~~~~~~~~~~h~~~--V~-sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~--~~~~~~-~~v~~v~fsp~ 643 (784)
.+.|||+.++. ++..+.....+ .. -+.|+-++.+.+-. ....++|+++... . ....++ .++....|+|.
T Consensus 108 n~~~vwd~~sg~-iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGM-IVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCce-eEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence 48999999876 55666655544 44 56777776533322 3567889986321 1 112222 67788889987
Q ss_pred CCE--EEEE-----ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEeCCC
Q 047260 644 IGQ--LLAA-----ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS------------QNLVKVWSMAS 704 (784)
Q Consensus 644 ~~~--Ll~~-----s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs------------dd~I~IwDl~t 704 (784)
+++ |+.- ..++.++||.+..+..+..-.-....-..+.|.+.|++|++-- +..++|+++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 543 3332 2368899999987766554333333345688999998876532 23688898885
Q ss_pred CceEEEeccCCCceEEEEEecCCCEEEEEEC--CCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC---Cc
Q 047260 705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGG--ISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD---SS 779 (784)
Q Consensus 705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~--dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D---G~ 779 (784)
..+.-.. ...++|...+|.|.++.++++++ +-.+.++|++.+ +.+......=+.+.|+|.+++++.++-| |.
T Consensus 265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred cccceec-cccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccc
Confidence 4433333 55789999999999988877774 568999999887 4444455555677888888888887765 55
Q ss_pred EEEeC
Q 047260 780 VKLWK 784 (784)
Q Consensus 780 V~IWd 784 (784)
|-|||
T Consensus 342 i~i~~ 346 (561)
T COG5354 342 IEIFD 346 (561)
T ss_pred eEEec
Confidence 66665
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=2.2e-10 Score=128.06 Aligned_cols=277 Identities=17% Similarity=0.322 Sum_probs=196.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeecCCCC--CCeEEEEEccCC--CEEEEEeCCCeEEEEcCCC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-LQTESTPEDHK--SVVTDVRFRPNS--SQLATASVDKSVRLWDAAN 580 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~--~~It~i~fspdg--~~Latgs~Dg~I~IWdl~~ 580 (784)
-.+++..+.++|.|+-+|.++.-| +.+.|++. +...+-+ .|. -.|-++.|++.. .+-++......-.||++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 356788899999999999998887 66677764 3433333 233 346778888733 3444444455677898764
Q ss_pred C--cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeEEEEecCCCEEEEEECCC
Q 047260 581 P--NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 581 ~--~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
. ..+...+.+|...|+.+.|+|..+.++++|+.|-.+..||+++... ..........|+|+-....+++.+..+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 3 3355667799999999999999999999999999999999986432 233346778899999888999999999
Q ss_pred cEEEEECCCC-eEEEEEeCCCCCEEEEEEcC--CCCEEEEEeCCeEEEEeCCCCceE-EEeccCCCceEEEEEecCCCEE
Q 047260 655 VVSIFDIETD-RQTHSLQGHAELVNYICWDT--NGDYLASVSQNLVKVWSMASGECI-QELSSNGNQFHSCVFHPSYSTL 730 (784)
Q Consensus 655 ~I~IwDl~t~-~~i~~l~~h~~~V~sl~~sp--dg~~Lasgsdd~I~IwDl~t~~~i-~~l~~~~~~I~sl~fspdg~~L 730 (784)
.|.+||++.+ .++..+++|...|+.+.|.. .+.++.+..|++|+.||....... ........+|..-.+.|-|.-.
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 9999999987 67888999999999999875 344455555779999998754321 1122334566777777766533
Q ss_pred EEEE--CCCeEEEE---------ECCCCc-e-EEecccCCceEEEEEeCCC----------CEEEEEECCCcEEEeC
Q 047260 731 LVVG--GISSLELW---------NMAENK-S-MTIAAHENIISALAQSPVT----------GMVASASHDSSVKLWK 784 (784)
Q Consensus 731 ~s~s--~dg~I~Iw---------dl~~~~-~-~~~~~h~~~V~slafspdg----------~~LaSgs~DG~V~IWd 784 (784)
++-- ++..+.++ +..++. . .++.+|.+.|...-|-..+ -.|+|-+.|..+++|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 3222 22244444 333332 2 2788999988777665422 2799999999999993
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=3.1e-09 Score=117.49 Aligned_cols=186 Identities=17% Similarity=0.285 Sum_probs=149.6
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCCcceeeecc---CCCCCeEEEEEc------C-------------CCCcEEEEEeCCCe
Q 047260 559 PNSSQLATASVDKSVRLWDAANPNFCSQAYT---GHSSPIMSLDFH------P-------------KKTDLFCFCDNDNE 616 (784)
Q Consensus 559 pdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~---~h~~~V~sl~~s------p-------------~~~~ll~sgs~dg~ 616 (784)
|...++|....||.+||||...++ ....+. .-.+..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 456789999999999999998766 222222 123344455442 1 23457888889999
Q ss_pred EEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 047260 617 IQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLAS 691 (784)
Q Consensus 617 I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Las 691 (784)
|.+|++..++....+. +.+.++.++.+-..|.+++.|+.+..|+......++.+.+....+.+++.+|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999887765554 67888999999999999999999999999999999999999999999999999999987
Q ss_pred EeCCeEEEEeCCCCceEEEeccCCCceEEEEEecC-----CCEEEEEEC-CCeEEEEECCC
Q 047260 692 VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS-----YSTLLVVGG-ISSLELWNMAE 746 (784)
Q Consensus 692 gsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd-----g~~L~s~s~-dg~I~Iwdl~~ 746 (784)
++ ..|++||+++++.+.+|.+|.++|.++.|.-. |.+++++.. +..+.+|-+..
T Consensus 162 as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 75 47999999999999999999999999999877 667666544 34577776554
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.4e-09 Score=112.75 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=182.4
Q ss_pred CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeeecCCC--CCCe-EEEEEcc
Q 047260 494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH-----------DRKVVLWNMDTLQTESTPEDH--KSVV-TDVRFRP 559 (784)
Q Consensus 494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~-----------Dg~I~IWd~~t~~~~~~l~~h--~~~I-t~i~fsp 559 (784)
+..|..+..|. |. .|.-+.|||+.+||+|-+. ...++|||+.+|...+.+... ...+ .-+.||.
T Consensus 238 G~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 238 GESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH 315 (698)
T ss_pred CccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc
Confidence 34444444443 44 4889999999999999652 246999999999998888652 2223 3468999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe-C----CCeEEEEeCCCCeeEEeec--
Q 047260 560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-N----DNEIQYWSINPFLCTHITK-- 632 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-~----dg~I~iwDl~~~~~~~~~~-- 632 (784)
|++++|.-.. .+|.||+...-. ++....-....|....|+|.+. +|+--. . -..+.+..+.+...++...
T Consensus 316 DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 316 DDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred CCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccce
Confidence 9999988776 469999877532 2221122345688899999865 443221 1 1245555555544443322
Q ss_pred -CCeeEEEEecCCCEEEEEEC----------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eE
Q 047260 633 -GGTAQVRFQPRIGQLLAAAS----------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LV 697 (784)
Q Consensus 633 -~~v~~v~fsp~~~~Ll~~s~----------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I 697 (784)
-.-+.+.|...|.+|++-.. -..+.||.++..........-...|...+|.|.|..+++-+.+ ++
T Consensus 393 nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 393 NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence 23344667778877765432 1235666666554333333366788999999999988776522 88
Q ss_pred EEEeCCC-C---ceEEEeccCCCceEEEEEecCCCEEEEEEC---CCeEEEEECCCC--ceEEecccCCceEEEEEeCCC
Q 047260 698 KVWSMAS-G---ECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLELWNMAEN--KSMTIAAHENIISALAQSPVT 768 (784)
Q Consensus 698 ~IwDl~t-~---~~i~~l~~~~~~I~sl~fspdg~~L~s~s~---dg~I~Iwdl~~~--~~~~~~~h~~~V~slafspdg 768 (784)
.+|.+.+ . +.+.++.. ...+.+.|+|.|.++++++- .|.+.++|+.-. +......|. ..+.+.|.|.|
T Consensus 473 sfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG 549 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG 549 (698)
T ss_pred eEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC
Confidence 9998873 2 34444433 45688999999999887754 578999998853 333334444 36789999999
Q ss_pred CEEEEEECCCc
Q 047260 769 GMVASASHDSS 779 (784)
Q Consensus 769 ~~LaSgs~DG~ 779 (784)
+|+++++.-.+
T Consensus 550 RYvvT~ss~wr 560 (698)
T KOG2314|consen 550 RYVVTSSSSWR 560 (698)
T ss_pred CEEEEeeehhh
Confidence 99999986443
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.7e-08 Score=110.40 Aligned_cols=269 Identities=14% Similarity=0.258 Sum_probs=185.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC-----------CCeEEEEcC
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV-----------DKSVRLWDA 578 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-----------Dg~I~IWdl 578 (784)
=+-+.|||-|.||+|-..-| |.+|--++...+..+ .|. .|.-+.|||..+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35688999999999987777 999988877777777 354 4888999999999999653 257999999
Q ss_pred CCCcceeeeccC--CCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEEC
Q 047260 579 ANPNFCSQAYTG--HSS-PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 579 ~~~~~~~~~~~~--h~~-~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~ 652 (784)
.++. ..+.+.. ... .-.-+.|+.|+.++... ....|.||+..+...+... -.+|....|+|.+..|+.-..
T Consensus 290 ~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cccc-hhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 9987 3443332 112 22346788888744333 3478999998875444322 267788899999887776543
Q ss_pred -----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----------eEEEEeCCCCceEEEeccCCC
Q 047260 653 -----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-----------LVKVWSMASGECIQELSSNGN 716 (784)
Q Consensus 653 -----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-----------~I~IwDl~t~~~i~~l~~~~~ 716 (784)
-..+.+..+.+++.+++-.-+.-.-..+-|-.+|.||+.--+. .+.|+.++.....-....-..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 2467788888887777665555555567788899999875432 355666655433222223346
Q ss_pred ceEEEEEecCCCEEEEEECC---CeEEEEECCC-CceEEec--ccCCceEEEEEeCCCCEEEEEE---CCCcEEEeC
Q 047260 717 QFHSCVFHPSYSTLLVVGGI---SSLELWNMAE-NKSMTIA--AHENIISALAQSPVTGMVASAS---HDSSVKLWK 784 (784)
Q Consensus 717 ~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~-~~~~~~~--~h~~~V~slafspdg~~LaSgs---~DG~V~IWd 784 (784)
.|...+|-|.|..+++.+.. .++.+|.+.+ .....+. -.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 78899999999988877665 4799998874 2222111 1224578899999999888764 456666664
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=2.9e-08 Score=110.88 Aligned_cols=251 Identities=14% Similarity=0.070 Sum_probs=159.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
+..+++++.+|.|..+|..+++.+............+.. ++..+++++.++.|..+|..+++..-.... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecC
Confidence 567888889999999999999988776544332222322 467888889999999999988874332221 1222221
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee--------EEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA--------QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~--------~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
... .+. .++.+..++.|+.||.++++.+..+..... ...+ .++.++++..++.|..+|.++++.+...
T Consensus 141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 123 455667799999999998887665543211 1111 2356778888899999999999876554
Q ss_pred eCCC----CC------E-EEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeE
Q 047260 671 QGHA----EL------V-NYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL 739 (784)
Q Consensus 671 ~~h~----~~------V-~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I 739 (784)
.... .. + ....+ .++.++++..++.++.||..+++.+...... ...... ..+..+++++.+|.|
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVV 291 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeE
Confidence 3110 00 0 01111 1344444444669999999999887766522 112222 245678888999999
Q ss_pred EEEECCCCceEEec-ccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 740 ELWNMAENKSMTIA-AHE-NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 740 ~Iwdl~~~~~~~~~-~h~-~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+.+|..+++.+... ... ..+..... .+..|++++.||.|++||
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 99999998876222 211 12222222 366888899999998875
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.10 E-value=1.2e-07 Score=102.21 Aligned_cols=273 Identities=13% Similarity=0.107 Sum_probs=185.1
Q ss_pred CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeecCCCCC--CeEEEEEccCCCEEEEEeC
Q 047260 493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD-TLQTESTPEDHKS--VVTDVRFRPNSSQLATASV 569 (784)
Q Consensus 493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~--~It~i~fspdg~~Latgs~ 569 (784)
.+..|.++-.+.+|-+.-. +- .++..+....||.=.||.++ .++.+ +.|+. .-.+-..+.||+.|+.. .
T Consensus 214 ~g~tFeK~vdl~~~vS~Pm---IV-~~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDGkrIvFq-~ 285 (668)
T COG4946 214 GGKTFEKFVDLDGNVSSPM---IV-GERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDGKRIVFQ-N 285 (668)
T ss_pred CCcceeeeeecCCCcCCce---EE-cceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCCcEEEEe-c
Confidence 3447777777777644322 22 23333445667665566544 23332 22332 12333446688888775 4
Q ss_pred CCeEEEEcCCCCcceeeecc-----CCC-----CCeEEEE-EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-ecCCeeE
Q 047260 570 DKSVRLWDAANPNFCSQAYT-----GHS-----SPIMSLD-FHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-TKGGTAQ 637 (784)
Q Consensus 570 Dg~I~IWdl~~~~~~~~~~~-----~h~-----~~V~sl~-~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~~~~v~~ 637 (784)
.|.|.+||.++.......+. ... .+..-+. |++-...+++..+ .|...+.+....-.+.. .++.|.-
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY 364 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRY 364 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEE
Confidence 58899999987653221111 000 1111111 4444444666665 56666666655444443 3466777
Q ss_pred EEEecCCCEEEEEECCC-cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260 638 VRFQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG 715 (784)
Q Consensus 638 v~fsp~~~~Ll~~s~Dg-~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~ 715 (784)
..+..+.+.++.|..|| .|-|||.++++. ..+...-+.|.++..+++|++++++.+. .|.++|+.++.....-....
T Consensus 365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~ 443 (668)
T COG4946 365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY 443 (668)
T ss_pred EEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc
Confidence 77877888899999988 899999997764 4455677899999999999999999888 99999999998766556667
Q ss_pred CceEEEEEecCCCEEEEEECCC----eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE
Q 047260 716 NQFHSCVFHPSYSTLLVVGGIS----SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 716 ~~I~sl~fspdg~~L~s~s~dg----~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs 775 (784)
+-|+.+.|||++++|+.+--+| .|+++|+.+++........+.=.+-+|.||+++|..-+
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 8899999999999999998876 69999999999887666555556778999999877654
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=9.5e-08 Score=119.03 Aligned_cols=236 Identities=12% Similarity=0.140 Sum_probs=160.8
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeecCC--------------CCCCeEEEEEccCCCEEEEEeC-CCeEE
Q 047260 511 TCCHFSSD-GKLLASSGHDRKVVLWNMDTLQTESTPED--------------HKSVVTDVRFRPNSSQLATASV-DKSVR 574 (784)
Q Consensus 511 ~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--------------h~~~It~i~fspdg~~Latgs~-Dg~I~ 574 (784)
..++++++ +.++++-..++.|++||... ..+..+.. +-.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788874 55666667788899999864 44433322 1123578999998887666544 56799
Q ss_pred EEcCCCCcceeeeccC--C---------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----
Q 047260 575 LWDAANPNFCSQAYTG--H---------------SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----- 632 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~--h---------------~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----- 632 (784)
++|+.++. +.++.+ . -.....++|+|++..++++...++.|++||...........
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987654 222211 0 12346899999777788888889999999997654432110
Q ss_pred ------------CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeC-------------C--------CCCEE
Q 047260 633 ------------GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQG-------------H--------AELVN 678 (784)
Q Consensus 633 ------------~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~-------------h--------~~~V~ 678 (784)
.....++++|+++.|+++.. ++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12356889999987776665 69999999987653211100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-------------CCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260 679 YICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-------------NGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 679 sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-------------~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl 744 (784)
.++++++|.++++...+ .|++||..++........ .-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 78999999877776655 999999988765533211 1124678999999997777778899999999
Q ss_pred CCCce
Q 047260 745 AENKS 749 (784)
Q Consensus 745 ~~~~~ 749 (784)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=2.8e-09 Score=108.71 Aligned_cols=197 Identities=20% Similarity=0.230 Sum_probs=147.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--ecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES--TPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
...++.|++.+.-++++..+|.+.+-+........ ..+.|...++...|+. +.+++++|+.|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45688899999999999999999976666554444 7889999999999987 55789999999999999999544333
Q ss_pred -eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEe--ecCCeeEEEEecCCC-EEEEEECCCcEEEEE
Q 047260 586 -QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHI--TKGGTAQVRFQPRIG-QLLAAASDKVVSIFD 660 (784)
Q Consensus 586 -~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~--~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwD 660 (784)
.....|...|.+|.-+|..+..+++|+.|..|++||.+. ++.+.. ..++|..+..+|... .+++++.-+-.+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 335678899999999999899999999999999999995 333332 338899999998654 345556556667776
Q ss_pred CCCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEeCCCC
Q 047260 661 IETD--R---QTHSLQGHAELVNYICWDTNGDYLASVS--QNLVK-VWSMASG 705 (784)
Q Consensus 661 l~t~--~---~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~-IwDl~t~ 705 (784)
...+ + .....+.|.+-+..-.|.....+|++|+ |+.++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6554 2 3344456777777777766667788876 44544 6654443
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1e-07 Score=118.85 Aligned_cols=230 Identities=10% Similarity=0.071 Sum_probs=155.3
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEcCCCCcceeeecc-C------------CCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260 553 TDVRFRPN-SSQLATASVDKSVRLWDAANPNFCSQAYT-G------------HSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618 (784)
Q Consensus 553 t~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~~~~~~~-~------------h~~~V~sl~~sp~~~~ll~sgs~dg~I~ 618 (784)
..+++++. ++++++-+.++.|++||..... ....-. + .-.....|++.+++..++++-..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5666776778899999986432 221111 1 1123578999988776666666678899
Q ss_pred EEeCCCCeeEEeec-------------------CCeeEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEeCC-----
Q 047260 619 YWSINPFLCTHITK-------------------GGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGH----- 673 (784)
Q Consensus 619 iwDl~~~~~~~~~~-------------------~~v~~v~fsp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~~h----- 673 (784)
++|+.+........ .....++++|+++.++++ ..++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 99987654432211 123578999966655555 45799999999877543 22111
Q ss_pred ----------CCCEEEEEEcCCCCEEEEEe-C-CeEEEEeCCCCceEEEec-------------cC--------CCceEE
Q 047260 674 ----------AELVNYICWDTNGDYLASVS-Q-NLVKVWSMASGECIQELS-------------SN--------GNQFHS 720 (784)
Q Consensus 674 ----------~~~V~sl~~spdg~~Lasgs-d-d~I~IwDl~t~~~i~~l~-------------~~--------~~~I~s 720 (784)
-.....|+++|++..|+++. + +.|++||+.++....... .. -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 12345699999998655554 3 499999998765321110 00 012368
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCceEEeccc--------------CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 721 CVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAH--------------ENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h--------------~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++++++|..+++-..+++|++||..++....+.+. -.....|+++++|+++++-+.+++|++||
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 89999998777777888999999998876654332 23578899999999888888899999996
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.04 E-value=5.4e-09 Score=108.62 Aligned_cols=242 Identities=13% Similarity=0.239 Sum_probs=174.5
Q ss_pred CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC-CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 047260 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN-PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617 (784)
Q Consensus 539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~-~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I 617 (784)
...+..+++|.+.|++...-|...-+++.+.|.++|||--++ +.....+......+++++.+.++.. .|+++-.+|.+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence 345567789999999999999888899999999999996443 4434444455678899999998765 67778889999
Q ss_pred EEEeCCC----Cee---EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 047260 618 QYWSINP----FLC---THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLA 690 (784)
Q Consensus 618 ~iwDl~~----~~~---~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~La 690 (784)
.-+.+.. ... ...+...+..+.|+-....+++.+.|..+.-.-.+.+..+..+.- ...-+++.+.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 8887642 211 223346778888888888899999887776554444433221110 000111111111 333
Q ss_pred EEe-CCeEEEE--eCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce--EEecccCCceEEEEEe
Q 047260 691 SVS-QNLVKVW--SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS--MTIAAHENIISALAQS 765 (784)
Q Consensus 691 sgs-dd~I~Iw--Dl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~--~~~~~h~~~V~slafs 765 (784)
.|. .+.|.+. +...-..+.++.+|...+.++.|.+....++++..|..|.+||+-.++- ..+.+|...|..+...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 333 2233333 3344567889999999999999999999999999999999999876554 4788999999999999
Q ss_pred CCCCEEEEEECCCcEEEeC
Q 047260 766 PVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 766 pdg~~LaSgs~DG~V~IWd 784 (784)
+.-+.+++++.||.|.+||
T Consensus 250 ~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhheeeeeccCCCeEEEEe
Confidence 9899999999999999996
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=131.47 Aligned_cols=195 Identities=17% Similarity=0.317 Sum_probs=158.7
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 45567789999999999999999999999999999888777765 2337899999999999999999999999999982
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEE---eCCCeEEEEeCCC---CeeE-EeecCCeeEEEEecCCCEEEEEECCC
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFC---DNDNEIQYWSINP---FLCT-HITKGGTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sg---s~dg~I~iwDl~~---~~~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
+ .......|......+.|.. .++++. +.++.+.+||..- ..++ ..+.++++++++.|....|++|+.+|
T Consensus 2283 k-~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 K-PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred c-ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 3 5566678888888888875 245554 3578999999852 1222 45668899999999999999999999
Q ss_pred cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEec
Q 047260 655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELS 712 (784)
Q Consensus 655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~ 712 (784)
.|++||++..+.++.+.. ++ ...++++++ ++.|+||++.....++++.
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 999999999888877764 44 556777776 6699999999877777665
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=5.6e-09 Score=106.87 Aligned_cols=235 Identities=17% Similarity=0.327 Sum_probs=161.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeeecCCCC------------CCeEEEEEccCC--CEEEEE
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-----TESTPEDHK------------SVVTDVRFRPNS--SQLATA 567 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~------------~~It~i~fspdg--~~Latg 567 (784)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999865422 222344443 458889998744 356667
Q ss_pred eCCCeEEEEcCCCCcc-----------------------------------------eeeec-cCCCCCeEEEEEcCCCC
Q 047260 568 SVDKSVRLWDAANPNF-----------------------------------------CSQAY-TGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 568 s~Dg~I~IWdl~~~~~-----------------------------------------~~~~~-~~h~~~V~sl~~sp~~~ 605 (784)
+.|++|++|.+..... ..+.+ ..|...|.+|.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999998864310 00111 35777788999998876
Q ss_pred cEEEEEeCCCeEEEEeCCCC----eeEEee-------cCCeeEEEEecCCC-EEEEEECCCcEEEEECCCCeEE------
Q 047260 606 DLFCFCDNDNEIQYWSINPF----LCTHIT-------KGGTAQVRFQPRIG-QLLAAASDKVVSIFDIETDRQT------ 667 (784)
Q Consensus 606 ~ll~sgs~dg~I~iwDl~~~----~~~~~~-------~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~i------ 667 (784)
.+ + +..|-.|.+|+++-. ..+... ..-+++..|+|... .+...++.|.|++-|++.....
T Consensus 186 t~-l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TL-L-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred ee-e-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 33 3 345889999998632 222211 13456778888754 4556677899999999843211
Q ss_pred E----------EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC-ceEEEeccCC------------Cce---EEE
Q 047260 668 H----------SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG-ECIQELSSNG------------NQF---HSC 721 (784)
Q Consensus 668 ~----------~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~-~~i~~l~~~~------------~~I---~sl 721 (784)
. -+.+-...|..+.|+++|+|+++-+-.+|+|||.+.. .++.++.-|. ..| ..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 0 1112334678899999999999888779999999864 5777775442 222 457
Q ss_pred EEecCCCEEEEEECCCeEEEEE
Q 047260 722 VFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 722 ~fspdg~~L~s~s~dg~I~Iwd 743 (784)
.|+.+.+.+++|+.....-||-
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EecCCcccccccccccceeeec
Confidence 7888888888888776665554
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=2.2e-08 Score=102.23 Aligned_cols=237 Identities=13% Similarity=0.137 Sum_probs=163.1
Q ss_pred CCceEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCceeeecCCCC------CCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260 507 NSKVTCCHFSS---DGK-LLASSGHDRKVVLWNMDTLQTESTPEDHK------SVVTDVRFRPNSSQLATASVDKSVRLW 576 (784)
Q Consensus 507 ~~~V~~l~fsp---dg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~------~~It~i~fspdg~~Latgs~Dg~I~IW 576 (784)
+..+..+.|.- +|. .|+-+..+|.|.+|..........+++-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 44566677754 555 56677888999999876544444443221 134578899989999999999999965
Q ss_pred cCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeE----EeecCCeeEEEEec-CCCEEEE
Q 047260 577 DAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCT----HITKGGTAQVRFQP-RIGQLLA 649 (784)
Q Consensus 577 dl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~----~~~~~~v~~v~fsp-~~~~Ll~ 649 (784)
+..... ......+.|.-+++...|+...++++.+|++|+.+..||++ +.+.+ ..+..+|.+|.-+| ...++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 554433 12346789999999999999999999999999999999999 33333 44557788887765 4567889
Q ss_pred EECCCcEEEEECCC-CeEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEeCCCC--c---eEEEeccCCCceEEE
Q 047260 650 AASDKVVSIFDIET-DRQTHSLQGHAELVNYICWDTN--GDYLASVSQNLVKVWSMASG--E---CIQELSSNGNQFHSC 721 (784)
Q Consensus 650 ~s~Dg~I~IwDl~t-~~~i~~l~~h~~~V~sl~~spd--g~~Lasgsdd~I~IwDl~t~--~---~i~~l~~~~~~I~sl 721 (784)
|+.|..|++||.++ ++++..-. -.+.|..++++|. +++|+++-.+-.+|.+...+ + .....+.|.+-++.-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999995 56654433 4578999999984 34555555555666666543 2 233445565555555
Q ss_pred EEecCCCEEEEEEC-CCeEE-EEEC
Q 047260 722 VFHPSYSTLLVVGG-ISSLE-LWNM 744 (784)
Q Consensus 722 ~fspdg~~L~s~s~-dg~I~-Iwdl 744 (784)
.|......|++++. |+.++ +|-.
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccccceeeeeeccccceeeeeee
Confidence 66444456777653 44434 6643
No 277
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=4.4e-09 Score=122.61 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=124.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC
Q 047260 513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS 592 (784)
Q Consensus 513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~ 592 (784)
+-++++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.|+.||++++++|+|.++|+|++++.+.......+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 34566777899999999999999874444446789999999999999999999999999999999999886666778999
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260 593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIET 663 (784)
Q Consensus 593 ~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t 663 (784)
..|..++|+|+ .+++++.|.++++|+.+..... .+ ...+..+.+.+....+++++.|+.+++||+..
T Consensus 219 aRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 219 ARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceeEEEEeccc---eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999988 7899999999999977643332 22 26788899999989999999999999999754
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.7e-07 Score=104.18 Aligned_cols=225 Identities=11% Similarity=0.083 Sum_probs=147.8
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCE-EEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK 604 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~-Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~ 604 (784)
..|.+-|.+... ...+.... .+....|+|||+. ++..+.+ ..|.++|+.+++. ..+....+.+....|+||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 345555555333 33333333 7788999999984 6654444 4688899987652 2222345556778899999
Q ss_pred CcEEEEEeCC--CeEEEEeCCCCeeEEeecCC--eeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCE
Q 047260 605 TDLFCFCDND--NEIQYWSINPFLCTHITKGG--TAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELV 677 (784)
Q Consensus 605 ~~ll~sgs~d--g~I~iwDl~~~~~~~~~~~~--v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V 677 (784)
..++++.+.+ ..|+++|+............ .....|+|+|+.|+..+. . ..|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777655 46888888776654443322 345679999998887775 2 3688889988766443321 111
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEEC
Q 047260 678 NYICWDTNGDYLASVSQ--------N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNM 744 (784)
Q Consensus 678 ~sl~~spdg~~Lasgsd--------d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl 744 (784)
...|+|||++|+.... + .|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .|.++++
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 2489999998877652 2 688889888764 344433 2334688999999988877653 4778888
Q ss_pred CCCceEEecccCCceEEE
Q 047260 745 AENKSMTIAAHENIISAL 762 (784)
Q Consensus 745 ~~~~~~~~~~h~~~V~sl 762 (784)
.......+....+.|...
T Consensus 400 ~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 400 NYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCCeeEEeecCCCccCCC
Confidence 877666665544544443
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.9e-08 Score=110.95 Aligned_cols=266 Identities=13% Similarity=0.168 Sum_probs=184.7
Q ss_pred CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260 450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR 529 (784)
Q Consensus 450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg 529 (784)
...++++|..||-+++.....+.+.-.. .......++..-.++.||++.|.-+.|+.+...|-|...+|
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~-----------~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNK-----------SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccc-----------cccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456778888998888866433211111 11112234455577899999999999999989999999999
Q ss_pred eEEEEECCCCceeeecC--CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcE
Q 047260 530 KVVLWNMDTLQTESTPE--DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~--~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~l 607 (784)
.|.||-+-.+.-..... ..++.|.+++|+.+|..|...-.||.|.|=.++..+..-+.+.+ .....+.|++|.. .
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~-~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE-Q 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH-H
Confidence 99999998776544432 34567899999999999999999999998888765543344433 2245788999877 4
Q ss_pred EEEEeCCCeEEEEeCCCC-------eeEEe-------ecCCeeEEEE--------ecCCCEEEEEECCCcEEEEECCCCe
Q 047260 608 FCFCDNDNEIQYWSINPF-------LCTHI-------TKGGTAQVRF--------QPRIGQLLAAASDKVVSIFDIETDR 665 (784)
Q Consensus 608 l~sgs~dg~I~iwDl~~~-------~~~~~-------~~~~v~~v~f--------sp~~~~Ll~~s~Dg~I~IwDl~t~~ 665 (784)
+..+-.+|.+.+||.... .|... +...+..+.| -|+...|+++...|.+.|..-++..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 445666899999997631 11111 1112333433 3577889999999999988766554
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----------eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN----------LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----------~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~ 731 (784)
....+. ..-.|..+.|+++|.+|++++.+ .|.+|. .-|+.+.+++.++..|+.++|-..|-.++
T Consensus 251 ~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 251 EPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE
Confidence 333333 23578889999999999998722 344443 45778888888888899988876664443
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=4.9e-07 Score=110.82 Aligned_cols=277 Identities=13% Similarity=0.201 Sum_probs=185.4
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEE----ECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC-
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLW----NMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA- 579 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IW----d~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~- 579 (784)
...+.|.++.|-++..-|+.+..+|.|.++ +..+.. +.....-...|.+++|+||+..|+.++.+++|.+-+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 356789999999999999999999999999 544332 23333456789999999999999999999888775321
Q ss_pred -----------C-C--cc-------eeeecc------------------------CCCCCeEEEEEcCCCCcEEEEEe--
Q 047260 580 -----------N-P--NF-------CSQAYT------------------------GHSSPIMSLDFHPKKTDLFCFCD-- 612 (784)
Q Consensus 580 -----------~-~--~~-------~~~~~~------------------------~h~~~V~sl~~sp~~~~ll~sgs-- 612 (784)
. + +. ....|. .+...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 0 00 000000 02335567899999986655543
Q ss_pred CC---CeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEe----CCCCCEEE
Q 047260 613 ND---NEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETDRQTHSLQ----GHAELVNY 679 (784)
Q Consensus 613 ~d---g~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~~~i~~l~----~h~~~V~s 679 (784)
.. ..|+||+-+ +......+ +--.+++|.|.|+.|++.-. ...|.+|.- +|-....|. .....|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeE
Confidence 22 579999987 33222222 33457899999998887765 345556653 343333332 34568999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEeCCCCc--eEEEeccC-CCceEEEEEecCCCE-EEEEECCCeEEEEE----CCCC----
Q 047260 680 ICWDTNGDYLASVSQNLVKVWSMASGE--CIQELSSN-GNQFHSCVFHPSYST-LLVVGGISSLELWN----MAEN---- 747 (784)
Q Consensus 680 l~~spdg~~Lasgsdd~I~IwDl~t~~--~i~~l~~~-~~~I~sl~fspdg~~-L~s~s~dg~I~Iwd----l~~~---- 747 (784)
+.|++|+.+|+..-.+.|.+|-..+.. ...++... ...+..+.|+|...+ |.+.+.+|.+..++ +..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 999999999999888899999998864 23333322 233455899997654 55666656554433 2211
Q ss_pred ------------ceEE----------------ecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 748 ------------KSMT----------------IAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 748 ------------~~~~----------------~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
..+. .......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1110 112456899999999998899999999998874
No 281
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=3.8e-10 Score=128.01 Aligned_cols=262 Identities=15% Similarity=0.237 Sum_probs=186.0
Q ss_pred ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--eE
Q 047260 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--SV 573 (784)
Q Consensus 496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--~I 573 (784)
.|+.+++|+.|+...+|++|+.+.++|++|+..|.|++|++.+|.......+|...|+.|.-+.+|..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4567788899999999999999999999999999999999999999999999999999999999998887765543 46
Q ss_pred EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-ecC------CeeEEEEecCCCE
Q 047260 574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-TKG------GTAQVRFQPRIGQ 646 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~~~------~v~~v~fsp~~~~ 646 (784)
.+|++.........+. .-.++.|+.... .-+.|.......+||+.+...... +.+ .-.+..|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7999986443444443 346778876533 233344456788999998665544 221 2256779999887
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260 647 LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd 726 (784)
++- || .+||++..+.++.|......+ .=.|+|+|.-++.-++ |||+++.+.++.+..-. -..+.|+..
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE----IwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE----IWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----hhhhHHHHHHhcCcccc--ceEEEeccC
Confidence 763 33 589999988888876544322 2358999998887754 99999998887765432 255677777
Q ss_pred CCEEEEEEC--C---------------CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEE
Q 047260 727 YSTLLVVGG--I---------------SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASA 774 (784)
Q Consensus 727 g~~L~s~s~--d---------------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSg 774 (784)
|..++..-. | ...+-||....+.+........|..+|-++...++++-
T Consensus 1313 G~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1313 GDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 765544320 0 12334444444444444455667777777777666654
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=2.7e-07 Score=104.18 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=133.7
Q ss_pred CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc-EEEEEeC--CCeEEEEeCCCCeeEEee--cCCeeEEEEecCCC
Q 047260 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDN--DNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIG 645 (784)
Q Consensus 571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~-ll~sgs~--dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~ 645 (784)
..|.+-|.+... ......+ ..+....|+|++.. ++++... +..|+++|+.+++..... .+......|+|+++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 355565655433 2222222 37889999999986 4443333 457999999877655443 35566788999998
Q ss_pred EEEEEEC---CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCce
Q 047260 646 QLLAAAS---DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQF 718 (784)
Q Consensus 646 ~Ll~~s~---Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I 718 (784)
.++.... +..|.++|+.+++.. .+..+........|+|||+.|+..++. .|.++|+.+++....... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 8776544 357888898877643 344344334456899999988877743 799999988766433322 111
Q ss_pred EEEEEecCCCEEEEEECC---------CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260 719 HSCVFHPSYSTLLVVGGI---------SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~d---------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
...|+|+|++|+..+.. ..|.+.|+.++....+... .......|+|||+.|+....+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 24899999998887754 2688889988877655543 233468899999987766543
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.4e-07 Score=104.85 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=149.9
Q ss_pred cceeEEeEeecCCCceEEEEEcCCC------------CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc---
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDG------------KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP--- 559 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg------------~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp--- 559 (784)
..+..+..+..|...|+.+.|.|.. -+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 4456677788899999999998721 2578888899999999999999999999999999999987
Q ss_pred CC-CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-------CeeEEee
Q 047260 560 NS-SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-------FLCTHIT 631 (784)
Q Consensus 560 dg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-------~~~~~~~ 631 (784)
+. ..|+.-....+|.+|+..+++..-+ +........|+.+.|-+...++.-+..|.|.+-+.-. ++...+.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeec-cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 34 4566666778999999999884433 3333456778999997766677767778777766531 2222111
Q ss_pred cC--------------------C--------eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 047260 632 KG--------------------G--------TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWD 683 (784)
Q Consensus 632 ~~--------------------~--------v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s 683 (784)
.. + ...++|+|.-+.++.......+.|+|++-..++..+.-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 10 0 1124678888888888888999999999888887776666666677777
Q ss_pred CCCC--EEEEEe-CCeEEEEeC
Q 047260 684 TNGD--YLASVS-QNLVKVWSM 702 (784)
Q Consensus 684 pdg~--~Lasgs-dd~I~IwDl 702 (784)
|+++ .|++.. +|.+.||-.
T Consensus 282 P~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEe
Confidence 7654 455544 556666654
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=5.6e-09 Score=126.53 Aligned_cols=241 Identities=14% Similarity=0.188 Sum_probs=168.8
Q ss_pred EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEE
Q 047260 521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF 600 (784)
Q Consensus 521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~ 600 (784)
.+.....++.+.-|..+.... .++.+-..|.++.=+|...+.+||+.||.|++|....+..+..........|+.+.|
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred cCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence 334344455555555443222 233456778888889988999999999999999998776554444444588999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEEEEEEC---CCcEEEEECCCC---eEEEEEeC
Q 047260 601 HPKKTDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETD---RQTHSLQG 672 (784)
Q Consensus 601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~---~~i~~l~~ 672 (784)
+..|+ -+..++.||.+.+|.+.+.-.. ..+.....+++|-. ..+++++. ++.+.+||.... ..++ ..
T Consensus 2260 ~~qGn-k~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2260 NHQGN-KFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred cccCC-ceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--ee
Confidence 99987 5666778999999999843222 23334556666654 44555543 689999997542 2333 67
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260 673 HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT 751 (784)
Q Consensus 673 h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~ 751 (784)
|.+.++++++.|...+|++|+.+ .|++||++..+.++++.. ++ ...++++++..|.|+||++..-..+.
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhh
Confidence 99999999999999999999954 999999999888777754 44 55689999999999999998875552
Q ss_pred ec----ccCCce----EEEEEeCCCCEEEEEECCCc
Q 047260 752 IA----AHENII----SALAQSPVTGMVASASHDSS 779 (784)
Q Consensus 752 ~~----~h~~~V----~slafspdg~~LaSgs~DG~ 779 (784)
.. +|.+.. ..+... ..+.|.+|+.||+
T Consensus 2405 ~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2405 TFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 22 222211 112222 2457788888874
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=3.9e-06 Score=87.96 Aligned_cols=215 Identities=17% Similarity=0.196 Sum_probs=143.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEc-cCCCEEEEEeCCCeEEEEcCCCCcceeee-c
Q 047260 512 CCHFSS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR-PNSSQLATASVDKSVRLWDAANPNFCSQA-Y 588 (784)
Q Consensus 512 ~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fs-pdg~~Latgs~Dg~I~IWdl~~~~~~~~~-~ 588 (784)
+++|.+ ++.++++--..+.|..|+..+++..... ... ...+.+. +++ .|+.+..++ +.++|+.+++..... .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 7777777778899999999987654322 122 6777777 565 555555544 556698876532111 1
Q ss_pred --cC-CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CC
Q 047260 589 --TG-HSSPIMSLDFHPKKTDLFCFCDND--------NEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DK 654 (784)
Q Consensus 589 --~~-h~~~V~sl~~sp~~~~ll~sgs~d--------g~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg 654 (784)
.. .......+++.++|. ++++.... |.|..++.. .+..... -.....++|+|+++.|+++.. .+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 11 345688999999988 55555433 568888887 4433332 255678999999998886665 78
Q ss_pred cEEEEECCCCe-------EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEe-c
Q 047260 655 VVSIFDIETDR-------QTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFH-P 725 (784)
Q Consensus 655 ~I~IwDl~t~~-------~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-p 725 (784)
.|..||+.... ....+....+....++++.+|++.++.. .+.|.++|.. |+.+..+......+++|+|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 89999986321 1122222233478899999999877766 4599999988 88888888776689999994 6
Q ss_pred CCCEEEEEE
Q 047260 726 SYSTLLVVG 734 (784)
Q Consensus 726 dg~~L~s~s 734 (784)
+.+.|++.+
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 666666654
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=5.1e-07 Score=97.37 Aligned_cols=269 Identities=13% Similarity=0.147 Sum_probs=165.3
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDR-KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF 583 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg-~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~ 583 (784)
+|.+.|.-..+..+++-++.|..|| .|-|+|.++++.. .+...-+.|.++..+++|++++.+.....|.+.|+++++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn- 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN- 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-
Confidence 5788899999999999999999999 8999999977654 455677889999999999999999999999999999987
Q ss_pred eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCeeEEeecCCe--eEEEEecCCCEEEEEECCCcEE
Q 047260 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN----EIQYWSINPFLCTHITKGGT--AQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg----~I~iwDl~~~~~~~~~~~~v--~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
....-....+-|+.++|+|+++. ++-+--+| .|+++|+...+......... .+-+|.|++++|+.-+.-
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R---- 509 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR---- 509 (668)
T ss_pred eeEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEecc----
Confidence 44444556678999999999884 44444344 68999999988877665443 445799999988765531
Q ss_pred EEECCCCeEEEEE--eCCCCCEEEEE----EcC-----------CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEE
Q 047260 658 IFDIETDRQTHSL--QGHAELVNYIC----WDT-----------NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHS 720 (784)
Q Consensus 658 IwDl~t~~~i~~l--~~h~~~V~sl~----~sp-----------dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~s 720 (784)
-.|..+.+.+..+ ..+..+...+. .+| .+++.+-+-++.+.=+.+..+.-........+.|.-
T Consensus 510 sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~kill 589 (668)
T COG4946 510 SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILL 589 (668)
T ss_pred ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEE
Confidence 1111111111111 11111111000 011 111111111111111111111111111111111221
Q ss_pred EEEecCCC---EEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 721 CVFHPSYS---TLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 721 l~fspdg~---~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
..+--.|. ++...-..|.|.+||+++.+...+ ...|.++..|+|+..|.. -.||.++++|
T Consensus 590 fs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~---k~nvss~rlS~D~s~ilv-k~d~kl~~f~ 652 (668)
T COG4946 590 FSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY---KDNVSSFRLSSDGSKILV-KLDGKLRLFD 652 (668)
T ss_pred EEeeccchhhhhhcCCCccceEEEEecchhhHHHH---hcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence 11111111 112122347889999888765433 356888999999998888 7899999885
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=7.4e-09 Score=112.48 Aligned_cols=204 Identities=20% Similarity=0.308 Sum_probs=148.9
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260 542 ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN 615 (784)
Q Consensus 542 ~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg 615 (784)
+..+.+|...|..+.-..+.+.+++++.|++|++|.++... .+..++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 45677999999999887788899999999999999987532 25677889999999999987755 44444 89
Q ss_pred eEEEEeCCCCeeEEe-----ecCCeeEEEEec--CCCEEEEE-ECCCcEEEEECCCCeEEEEEe-----CCCCCEEEEEE
Q 047260 616 EIQYWSINPFLCTHI-----TKGGTAQVRFQP--RIGQLLAA-ASDKVVSIFDIETDRQTHSLQ-----GHAELVNYICW 682 (784)
Q Consensus 616 ~I~iwDl~~~~~~~~-----~~~~v~~v~fsp--~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~-----~h~~~V~sl~~ 682 (784)
.|.+||.=-++.+.. ..+.+..+..-+ +...++++ +...+|+++|.+..+-...++ +.+..+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999754333221 123333343333 33445555 348999999999987666554 34567899999
Q ss_pred cCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE-EECCCCce
Q 047260 683 DTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL-WNMAENKS 749 (784)
Q Consensus 683 spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I-wdl~~~~~ 749 (784)
.+.|+.++++- .++|.+.|.++|+.+..+.........++ .|....++....|.++.+ |...++..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999998875 56999999999999988876655544443 345556777777888888 87665543
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.2e-08 Score=107.24 Aligned_cols=246 Identities=13% Similarity=0.149 Sum_probs=175.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANP 581 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~ 581 (784)
|.+.|+.+..+ -.+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++..+.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77888887655 456999999999999998653 2445566788899999999999999999888 999999999875
Q ss_pred ccee-eeccCCCCCeEEEEEcCC-CC-cEEEEEeCCCeEEEEeCCCCee-----EEeecCCeeEEEEecCCCEEEEEECC
Q 047260 582 NFCS-QAYTGHSSPIMSLDFHPK-KT-DLFCFCDNDNEIQYWSINPFLC-----THITKGGTAQVRFQPRIGQLLAAASD 653 (784)
Q Consensus 582 ~~~~-~~~~~h~~~V~sl~~sp~-~~-~ll~sgs~dg~I~iwDl~~~~~-----~~~~~~~v~~v~fsp~~~~Ll~~s~D 653 (784)
.... ..+....+.+.++ .++. .. .+.++.-.++.|.++|-....| ...+..++.++.+.+.+..+++....
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 5221 1111122222222 1221 11 2334445688999999875432 23345789999999999999999999
Q ss_pred CcEEEEECCC------CeEE---------EEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC---
Q 047260 654 KVVSIFDIET------DRQT---------HSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN--- 714 (784)
Q Consensus 654 g~I~IwDl~t------~~~i---------~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~--- 714 (784)
|.|..|..+. .+.. ..+........+++|+|++..+.+-+++ .|+++++++++.+.++...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998873 1111 1122345677899999999999998877 9999999999876655321
Q ss_pred -----------------------------C-CceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc
Q 047260 715 -----------------------------G-NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA 754 (784)
Q Consensus 715 -----------------------------~-~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~ 754 (784)
+ ..-..++|...+++|+.++--| |++.++.++.+.++.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1 1235678888999998887765 8899999888765443
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.85 E-value=1.3e-06 Score=107.30 Aligned_cols=230 Identities=11% Similarity=0.199 Sum_probs=157.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEE----cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260 548 HKSVVTDVRFRPNSSQLATASVDKSVRLW----DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623 (784)
Q Consensus 548 h~~~It~i~fspdg~~Latgs~Dg~I~IW----dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~ 623 (784)
....|.++.|.++...|+.+..+|.|.+. +..+.. ......-...|.+++|+||+. +++..+.++.|.+.+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEecc
Confidence 45789999999999999999999999999 555433 333334567899999999988 55555557776665321
Q ss_pred ---------------C-------------------Cee----EEe------------ecCCeeEEEEecCCCEEEEEEC-
Q 047260 624 ---------------P-------------------FLC----THI------------TKGGTAQVRFQPRIGQLLAAAS- 652 (784)
Q Consensus 624 ---------------~-------------------~~~----~~~------------~~~~v~~v~fsp~~~~Ll~~s~- 652 (784)
. ++. ... ....-..++|-.||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 000 000 1224456889999999998875
Q ss_pred --C---CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC---C-eEEEEeCCCCceEEEe----ccCCCceE
Q 047260 653 --D---KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ---N-LVKVWSMASGECIQEL----SSNGNQFH 719 (784)
Q Consensus 653 --D---g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd---d-~I~IwDl~t~~~i~~l----~~~~~~I~ 719 (784)
. ..|+||+-+ |.....-+.-.+--.+++|.|.|.+||+... . .|.+|.- +|-.-.+| ......|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence 2 578999976 6555544444455567899999999999873 2 7888874 33322222 24467899
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCceE---Eec-ccCCceEEEEEeCCCC-EEEEEECCCcEEEe
Q 047260 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM---TIA-AHENIISALAQSPVTG-MVASASHDSSVKLW 783 (784)
Q Consensus 720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~---~~~-~h~~~V~slafspdg~-~LaSgs~DG~V~IW 783 (784)
.+.|++++..|++...|. |.+|-..+..-. .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 999999999988877654 999998887643 222 2334455699998654 46666665666543
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=1.8e-06 Score=89.52 Aligned_cols=215 Identities=13% Similarity=0.009 Sum_probs=138.3
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCeEEEE--EccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260 527 HDRKVVLWNMDTLQTESTPEDHKSVVTDVR--FRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK 604 (784)
Q Consensus 527 ~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~--fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~ 604 (784)
.+|.|..||..+++.+..... ...+.... ..+++..+++++.++.|..||..+++..-..-. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-cc
Confidence 378999999999999888743 11122222 233566788888999999999998874333222 1221111122 22
Q ss_pred CcEEEEEeCCCeEEEEeCCCCeeEEee-cC------CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCC-
Q 047260 605 TDLFCFCDNDNEIQYWSINPFLCTHIT-KG------GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAEL- 676 (784)
Q Consensus 605 ~~ll~sgs~dg~I~iwDl~~~~~~~~~-~~------~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~- 676 (784)
. .++++..++.|+.+|..+++.+... .. ..........+..++++..++.|..+|+++|+.+.........
T Consensus 77 ~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 G-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp T-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred c-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 3 3455557889999999988887763 21 1122333444788999999999999999999998888764322
Q ss_pred ---------EEEEEEcCCCCEEEEEeCCe-EEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 677 ---------VNYICWDTNGDYLASVSQNL-VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 677 ---------V~sl~~spdg~~Lasgsdd~-I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
+..-....++.++++..++. +.+ |+.+++.+.... ...+.. ....++..|++++.++.|.+||+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 12222333454444444554 566 999999765443 222222 2456777888888999999999999
Q ss_pred CceE
Q 047260 747 NKSM 750 (784)
Q Consensus 747 ~~~~ 750 (784)
++..
T Consensus 232 G~~~ 235 (238)
T PF13360_consen 232 GKVV 235 (238)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 9865
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.82 E-value=7.2e-07 Score=90.26 Aligned_cols=243 Identities=10% Similarity=0.027 Sum_probs=159.7
Q ss_pred CCeEEEEECCCCc--eeeecCCCCCCeEEEEEcc-----CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEE
Q 047260 528 DRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRP-----NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF 600 (784)
Q Consensus 528 Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fsp-----dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~ 600 (784)
...|-+|++.+.. .+... +.+.|.| ...+|+.|+.-|...+|...+..........|...|+-+.-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3446777765433 22222 3344544 44589999999999999998766555544445444433322
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEE-EEeCCC
Q 047260 601 HPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTH-SLQGHA 674 (784)
Q Consensus 601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~-~l~~h~ 674 (784)
.-+...-+..++.|.++++.+++..... +.-.-....+.++++++++++.+....|..|.+... ..+. ......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 2233334555777888888877643222 222234788999999999999999999999988754 2233 223344
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EE----EeccCCCceEEEEEecCCC--EEEEEECCCeEEEEECCC
Q 047260 675 ELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQ----ELSSNGNQFHSCVFHPSYS--TLLVVGGISSLELWNMAE 746 (784)
Q Consensus 675 ~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~----~l~~~~~~I~sl~fspdg~--~L~s~s~dg~I~Iwdl~~ 746 (784)
+.-.+..|+.....+|++..| ++.|||++.... .. +-..|.+.+..|.|++.|. .|+..-.-+.+.+.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 556788999999999999955 999999987532 22 2235788999999998764 355555567899999998
Q ss_pred CceEE--------ecccCC-ceEEEEEeCCCCEEEEEECC
Q 047260 747 NKSMT--------IAAHEN-IISALAQSPVTGMVASASHD 777 (784)
Q Consensus 747 ~~~~~--------~~~h~~-~V~slafspdg~~LaSgs~D 777 (784)
.+... ...|.. .|..-+|+.++..+.+.+.+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 86542 223333 37778888877766655443
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=3.4e-07 Score=103.68 Aligned_cols=234 Identities=16% Similarity=0.223 Sum_probs=162.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC------------CEEEEEeCCCeEEEEc
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS------------SQLATASVDKSVRLWD 577 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg------------~~Latgs~Dg~I~IWd 577 (784)
-.++.|+|.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|.|.|.. -+||++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 6678899877 6777664 469999999999999999999999999998721 2567777789999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCC-CEEEEEECCCcE
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRI-GQLLAAASDKVV 656 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I 656 (784)
..... ....+..|.++|..++|-+... +. ..|++......|
T Consensus 96 ~~~~s-~~~~l~~~~~~~qdl~W~~~rd-------------------------------------~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 96 FVLAS-VINWLSHSNDSVQDLCWVPARD-------------------------------------DSRDVLLAIHGSSTL 137 (1062)
T ss_pred ehhhh-hhhhhcCCCcchhheeeeeccC-------------------------------------cchheeEEecCCcEE
Confidence 98765 5556677888898888876432 11 234444455677
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcC-CCC-EEEEEeCCeEEEEeCCC-------CceEEEeccCCC-----------
Q 047260 657 SIFDIETDRQTHSLQGHAELVNYICWDT-NGD-YLASVSQNLVKVWSMAS-------GECIQELSSNGN----------- 716 (784)
Q Consensus 657 ~IwDl~t~~~i~~l~~h~~~V~sl~~sp-dg~-~Lasgsdd~I~IwDl~t-------~~~i~~l~~~~~----------- 716 (784)
.+|+..+|+.............|+.++| |.+ +.+.++.|.|.+.+.-. ++....-..|..
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ 217 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG 217 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence 7777777777766665556666777777 333 44445566555555421 122222112111
Q ss_pred -c-------------eEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-ecccCCceEEEEEeCCCC--EEEEEECCCc
Q 047260 717 -Q-------------FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-IAAHENIISALAQSPVTG--MVASASHDSS 779 (784)
Q Consensus 717 -~-------------I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~h~~~V~slafspdg~--~LaSgs~DG~ 779 (784)
. ...++|+|..+.++...-...+.|+|++-..++. +.-..+.+.-+.|-|+.+ .|++.-.||+
T Consensus 218 ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 218 NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR 297 (1062)
T ss_pred ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCe
Confidence 0 1235678988888888888899999999888773 333445556677777654 7899999999
Q ss_pred EEEe
Q 047260 780 VKLW 783 (784)
Q Consensus 780 V~IW 783 (784)
+.||
T Consensus 298 ltir 301 (1062)
T KOG1912|consen 298 LTIR 301 (1062)
T ss_pred EEEE
Confidence 9998
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=1.2e-07 Score=100.94 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=97.7
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl 578 (784)
...++......|+.+..+......-.+++...+.+|....+.....+ +|-..+++|+|+||+++|+++..|..|+|-..
T Consensus 102 ~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~y 180 (390)
T KOG3914|consen 102 DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRY 180 (390)
T ss_pred eEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence 33333334444555544433333333455566777776665554444 89999999999999999999999999999888
Q ss_pred CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec
Q 047260 579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK 632 (784)
Q Consensus 579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~ 632 (784)
...........||+.-|..++..++. .|++++.|++|++||+.++++++.+.
T Consensus 181 pa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 181 PATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence 77665556667899999999998764 58899999999999999998886654
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.78 E-value=3.7e-06 Score=94.63 Aligned_cols=254 Identities=9% Similarity=-0.023 Sum_probs=155.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC----C
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS----P 594 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~----~ 594 (784)
+..++.++.+|.|+.+|.++++.+............... .+..++.++.++.|..+|.++++..-........ .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456777888999999999999998877543321111122 2446777888999999999988743322211100 0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--C--------eeEEEEec--CCCEEEEEECCCcEEEEECC
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--G--------TAQVRFQP--RIGQLLAAASDKVVSIFDIE 662 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~--------v~~v~fsp--~~~~Ll~~s~Dg~I~IwDl~ 662 (784)
..+.... +. .++.+..++.+..+|..+++.+..... + ...+..+| .++.+++++.+|.+..+|..
T Consensus 198 ~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0011111 12 455567789999999887765543321 0 00111112 35678888889999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCeEEE
Q 047260 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLEL 741 (784)
Q Consensus 663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~I 741 (784)
+++.+..... .....+.. .++.+++...++.|..+|..+++.+....... ....+..+ .+.+|++++.+|.|++
T Consensus 275 tG~~~W~~~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred CCCEEEeecC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 9987765432 11112222 23444444446699999999998776543211 12222223 2457899999999999
Q ss_pred EECCCCceEE-ecccCCceE-EEEEeCCCCEEEEEECCCcEEEeC
Q 047260 742 WNMAENKSMT-IAAHENIIS-ALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 742 wdl~~~~~~~-~~~h~~~V~-slafspdg~~LaSgs~DG~V~IWd 784 (784)
+|..+++.+. ..-....+. ...+ .+..|+.++.||.|+.++
T Consensus 350 ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 350 INREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 9999998873 222222222 2222 245788899999998764
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.77 E-value=9.9e-07 Score=89.28 Aligned_cols=229 Identities=14% Similarity=0.039 Sum_probs=147.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcee-eecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI 595 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~-~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V 595 (784)
...+||.||..|...+|...+.... .....|...|+-+.=.- ....+..++.|.++++.+++-+......... .-.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-ccce
Confidence 3458999999999999999865433 33334444333222111 2234677888999999988754321111111 1238
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEE----eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260 596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTH----ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS 669 (784)
Q Consensus 596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~----~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~ 669 (784)
.++.+++++. +.++.++...|..|.+... ..+. ....+--+..|+.....++++..||++.|||++.......
T Consensus 162 ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 162 NSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 8999999988 4455555778888888642 2222 1224556788999999999999999999999997643322
Q ss_pred E-----eCCCCCEEEEEEcCCCCE-EEEEeC--CeEEEEeCCCCceEEEeccCC--------CceEEEEEecCCCEEEEE
Q 047260 670 L-----QGHAELVNYICWDTNGDY-LASVSQ--NLVKVWSMASGECIQELSSNG--------NQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 670 l-----~~h~~~V~sl~~spdg~~-Lasgsd--d~I~IwDl~t~~~i~~l~~~~--------~~I~sl~fspdg~~L~s~ 733 (784)
. ..|.+.++.+.|++.|.+ |..-++ ..+.|.|+++++....+.... ..|....|+.++..+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2 248899999999986642 333344 499999999987555443222 226667777777666666
Q ss_pred ECCCeEEEEECCCCce
Q 047260 734 GGISSLELWNMAENKS 749 (784)
Q Consensus 734 s~dg~I~Iwdl~~~~~ 749 (784)
+.+ .+.=|++.....
T Consensus 321 ~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 321 NEL-QGAEYNILSRSR 335 (344)
T ss_pred cch-hhheeeccccce
Confidence 554 344555554443
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=2.5e-08 Score=111.96 Aligned_cols=204 Identities=18% Similarity=0.302 Sum_probs=148.9
Q ss_pred eEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260 501 GCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl 578 (784)
..+.+|...|+.+.|.|. ...|++++.|..|..||+.+-. .+..+..-....+.|+|+-....+++.+..+.|+|||+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 357889999999999995 4589999999999999998643 44444444566788999985555566667788999999
Q ss_pred CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE----EeecCCeeEEEEecCCCEEEEEEC--
Q 047260 579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT----HITKGGTAQVRFQPRIGQLLAAAS-- 652 (784)
Q Consensus 579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~----~~~~~~v~~v~fsp~~~~Ll~~s~-- 652 (784)
+.+..+...+++|...|..++|+......+.+++.|++|++||....... ...+.++..-++.|-|.-.++--.
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 99888888899999999999998877778889999999999998753222 222345555566665543332221
Q ss_pred CCcEEEE---------ECCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEEeCC-eEEEEeCCC
Q 047260 653 DKVVSIF---------DIET-DRQTHSLQGHAELVNYICWDTNG----------DYLASVSQN-LVKVWSMAS 704 (784)
Q Consensus 653 Dg~I~Iw---------Dl~t-~~~i~~l~~h~~~V~sl~~spdg----------~~Lasgsdd-~I~IwDl~t 704 (784)
+..|.++ +..+ ..+++.|.+|.+.|....|-..+ -.|++=+.| .+++|-+.+
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2233333 3333 36889999999988877774322 257787766 999998754
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.2e-05 Score=85.17 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=162.1
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCceeeecCCCCCCe--EEEEEccCCCEEEEEeC-----CCeEEEEcCC
Q 047260 509 KVTCCHFSS-DGKLLASSGHDRK-VVLWNMDTLQTESTPEDHKSVV--TDVRFRPNSSQLATASV-----DKSVRLWDAA 579 (784)
Q Consensus 509 ~V~~l~fsp-dg~~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~I--t~i~fspdg~~Latgs~-----Dg~I~IWdl~ 579 (784)
....++.+| ++..++.+-.-|+ ..+||..+++....+....+.- =.-.|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 5566777777665 7889999998887765433322 13689999999999743 4789999999
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCC--CEEEEEECCCcEE
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRI--GQLLAAASDKVVS 657 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~--~~Ll~~s~Dg~I~ 657 (784)
..-..+..+..|.-....+.+.|+++.+++.- |-|. -+|+. ..|=....+..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~---------------------Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIE---------------------THPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCc---------------------cCcccCceecChhhcCCceE
Confidence 54446666777766677889999997666542 2221 12222 1233444566777
Q ss_pred EEECCCCeEEEEEe----CCCCCEEEEEEcCCCCEEEEEeC------C--eEEEEeCCCCceEEEec-------cCCCce
Q 047260 658 IFDIETDRQTHSLQ----GHAELVNYICWDTNGDYLASVSQ------N--LVKVWSMASGECIQELS-------SNGNQF 718 (784)
Q Consensus 658 IwDl~t~~~i~~l~----~h~~~V~sl~~spdg~~Lasgsd------d--~I~IwDl~t~~~i~~l~-------~~~~~I 718 (784)
+.|..+++.+.... .|...|..+++.++|..++..-. . .|.+++.. ..+..+. .-...+
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCce
Confidence 78888888776633 37778999999999988877641 1 34555433 3333332 234678
Q ss_pred EEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC
Q 047260 719 HSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH 776 (784)
Q Consensus 719 ~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~ 776 (784)
-+|++++++..+++.+-- +.+.+||..++..+....-. .+..++..+++ +++|.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCC
Confidence 999999999988777665 68999999999987544332 35566666655 5555443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=3.8e-06 Score=94.48 Aligned_cols=253 Identities=9% Similarity=0.024 Sum_probs=153.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCC----------CeE-EEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKS----------VVT-DVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA 587 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----------~It-~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~ 587 (784)
+..+++++.+|.|.-+|.++++.+........ .+. .+.. ++..++.++.++.+..+|.++++..-+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~- 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ- 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence 55777788889999999999988876543220 000 1111 355778888999999999998874332
Q ss_pred ccCCCCCeEE-EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEE----Eec--CCCEEEEEECCCcEEEEE
Q 047260 588 YTGHSSPIMS-LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVR----FQP--RIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 588 ~~~h~~~V~s-l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~----fsp--~~~~Ll~~s~Dg~I~IwD 660 (784)
.... ..+.+ ..+. + . .++.+..++.|..+|.++++.+..+......+. .+| .++.+++++.++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 2211 22221 1122 2 2 455677789999999999888766653211110 011 235677888899999999
Q ss_pred CCCCeEEEEEeCCCC-------CEEEEEEcC---CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEE
Q 047260 661 IETDRQTHSLQGHAE-------LVNYICWDT---NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL 730 (784)
Q Consensus 661 l~t~~~i~~l~~h~~-------~V~sl~~sp---dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L 730 (784)
..+++.+........ ....+..+| ++.+++++.++.+..+|..+|+.+.+..... ...+.. .+..|
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~~--~~~~v 297 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFAV--DGGRI 297 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcEE--ECCEE
Confidence 999987665431110 011111122 4444444556699999999998876654221 112222 45678
Q ss_pred EEEECCCeEEEEECCCCceEEec-ccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 731 LVVGGISSLELWNMAENKSMTIA-AHE-NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 731 ~s~s~dg~I~Iwdl~~~~~~~~~-~h~-~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
++++.+|.|..+|..+++.+-.. ... ....+..+ .+.+|+.++.||.|.+.|
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 88999999999999998765211 111 11222222 245677778888877653
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=3.2e-05 Score=81.02 Aligned_cols=212 Identities=10% Similarity=0.069 Sum_probs=137.1
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCeeEEe
Q 047260 553 TDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH-PKKTDLFCFCDNDNEIQYWSINPFLCTHI 630 (784)
Q Consensus 553 t~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s-p~~~~ll~sgs~dg~I~iwDl~~~~~~~~ 630 (784)
.++.|.+ ++.++++-...+.|..|+..++........+ ...+.+. ++ . .++.+.. +.+.++|+.+.+....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g-~l~v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-G-RLYVADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-S-EEEEEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-C-EEEEEEc-CceEEEecCCCcEEEE
Confidence 3678998 6766777667899999999886533322222 6777777 55 3 3444554 4455559887644332
Q ss_pred ec--------CCeeEEEEecCCCEEEEEECC--------CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 047260 631 TK--------GGTAQVRFQPRIGQLLAAASD--------KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS- 693 (784)
Q Consensus 631 ~~--------~~v~~v~fsp~~~~Ll~~s~D--------g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs- 693 (784)
.. ...+.+++.++|+..++.... |.|..++.. ++...... .-...+.|+|+|+++.|+.+.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 22 235779999998866655543 558888877 55443333 355678999999999887665
Q ss_pred -CCeEEEEeCCCCc-------eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEE
Q 047260 694 -QNLVKVWSMASGE-------CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQ 764 (784)
Q Consensus 694 -dd~I~IwDl~t~~-------~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slaf 764 (784)
.+.|..|++.... .+..+.........+++..+|+..++....+.|.++|.. ++.+ .+.-....+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 3389888886322 122222333347889999999887777788999999988 6655 34433468999999
Q ss_pred e-CCCCEEEEE
Q 047260 765 S-PVTGMVASA 774 (784)
Q Consensus 765 s-pdg~~LaSg 774 (784)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 665555443
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=7.3e-06 Score=84.39 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=117.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-------CCCCeEEEEEccC------CCEEEEEeCCCeEEE
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-------HKSVVTDVRFRPN------SSQLATASVDKSVRL 575 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~It~i~fspd------g~~Latgs~Dg~I~I 575 (784)
.=..++||||+.+||.+...|+|+|||+.. ..+..+.. -...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 356789999999999999999999999985 33333321 2356777777652 225677778888887
Q ss_pred EcCCCC---c-ceeee--c-cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEE
Q 047260 576 WDAANP---N-FCSQA--Y-TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL 648 (784)
Q Consensus 576 Wdl~~~---~-~~~~~--~-~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll 648 (784)
|-+..+ + ..... + ..+...|.++.++|..+.+++.|.....-.. ......++++-++-.+..+..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~--------s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM--------SKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc--------ccccccCceEEEEcCCCCcEE
Confidence 775321 1 11111 1 2346789999999998866665554332111 111112233333222222211
Q ss_pred --EEECCCc------EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccC
Q 047260 649 --AAASDKV------VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSN 714 (784)
Q Consensus 649 --~~s~Dg~------I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~ 714 (784)
....|+. ..+|.+-+.+...........|..+..+|||.+||+.. .|.|.+|++.+-+...++..+
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1111211 12333322222222223567899999999999999988 669999999987777666543
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.8e-07 Score=93.82 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=152.7
Q ss_pred eeEEeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEE
Q 047260 497 FCEVGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVR 574 (784)
Q Consensus 497 ~~~i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~ 574 (784)
|.....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|+.|...|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 334446778899999999999777 7888999999999999999998888877 889999999854 5778888899999
Q ss_pred EEcCCCCcceeeeccC--CCCCeEEEEEcC------CCCcEEEEEeCCCeEEEEeCC----CCeeEEeec--CCeeEEEE
Q 047260 575 LWDAANPNFCSQAYTG--HSSPIMSLDFHP------KKTDLFCFCDNDNEIQYWSIN----PFLCTHITK--GGTAQVRF 640 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~--h~~~V~sl~~sp------~~~~ll~sgs~dg~I~iwDl~----~~~~~~~~~--~~v~~v~f 640 (784)
|||++..+.....+.+ ...+|..|+.-+ .+. +++.... .+..|.+. ...++...+ +...++.+
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999987654444433 234555544332 222 3333222 24455543 222222333 34445556
Q ss_pred ecCCCEEEEEECCC-------cE-EEEECCCCeEEEEEe-CC-CCCE------EEEEEcCCCCEEEEEeCC--eEEEEeC
Q 047260 641 QPRIGQLLAAASDK-------VV-SIFDIETDRQTHSLQ-GH-AELV------NYICWDTNGDYLASVSQN--LVKVWSM 702 (784)
Q Consensus 641 sp~~~~Ll~~s~Dg-------~I-~IwDl~t~~~i~~l~-~h-~~~V------~sl~~spdg~~Lasgsdd--~I~IwDl 702 (784)
++..+++++..... .| .-.|..+|.++...+ .+ ...- ..+.-.++..+|+..+++ .+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 66667766665421 11 112333343333222 12 1111 112223566777766654 9999999
Q ss_pred CCCceEEEeccCCCceEEEEEe-cCCCEEEEEECCCeEEEEECC
Q 047260 703 ASGECIQELSSNGNQFHSCVFH-PSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 703 ~t~~~i~~l~~~~~~I~sl~fs-pdg~~L~s~s~dg~I~Iwdl~ 745 (784)
.+++.+.++... .+|.+++.. -++.-++..-.|..++||..+
T Consensus 419 ~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred chhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 999999998765 667776654 344445555556678888654
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.2e-07 Score=96.93 Aligned_cols=236 Identities=16% Similarity=0.163 Sum_probs=166.9
Q ss_pred CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC-C
Q 047260 450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH-D 528 (784)
Q Consensus 450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~-D 528 (784)
...+.-.+|.|+.++.|--.. ..-..-+..++.|.+.|.+++.+-|+.+++|.+. |
T Consensus 19 ka~fiiqASlDGh~KFWkKs~-----------------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D 75 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSR-----------------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD 75 (558)
T ss_pred hhheEEeeecchhhhhcCCCC-----------------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcc
Confidence 445566788999999882211 1112346678889999999999999999999777 9
Q ss_pred CeEEEEECCCCceeeecCC--CCCCeEEEEEccCC--C-EEEE-EeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEc
Q 047260 529 RKVVLWNMDTLQTESTPED--HKSVVTDVRFRPNS--S-QLAT-ASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFH 601 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~--h~~~It~i~fspdg--~-~Lat-gs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~s 601 (784)
..++++|+++...+.-++- -.+.+.++ ...| . .|+. .-.++.|.|+|-..... ......-|..+|.++.++
T Consensus 76 hs~KvfDvEn~DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred cceeEEEeeccchhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee
Confidence 9999999987655533321 22222221 2222 1 2333 34578999999775442 333344689999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCC-Ce-----eE------------EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260 602 PKKTDLFCFCDNDNEIQYWSINP-FL-----CT------------HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET 663 (784)
Q Consensus 602 p~~~~ll~sgs~dg~I~iwDl~~-~~-----~~------------~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t 663 (784)
+.+. .+++.+..|.|..|.... .+ .. ...+....++.|+|++..+.+-..|..|++++.++
T Consensus 154 qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 154 QAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 9876 677888899999998873 10 10 11235567899999999999999999999999998
Q ss_pred CeEEEEEe--------------------------------CCCC-CEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEE
Q 047260 664 DRQTHSLQ--------------------------------GHAE-LVNYICWDTNGDYLASVSQNLVKVWSMASGECIQE 710 (784)
Q Consensus 664 ~~~i~~l~--------------------------------~h~~-~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~ 710 (784)
++.+..+. .|.. .-+.++|+..|++|+-++-=-|+|.++.++.+++.
T Consensus 233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri 312 (558)
T KOG0882|consen 233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRI 312 (558)
T ss_pred chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEE
Confidence 87655432 1111 23557889999999988866799999999888876
Q ss_pred e
Q 047260 711 L 711 (784)
Q Consensus 711 l 711 (784)
+
T Consensus 313 ~ 313 (558)
T KOG0882|consen 313 L 313 (558)
T ss_pred e
Confidence 6
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=1.5e-05 Score=82.15 Aligned_cols=219 Identities=17% Similarity=0.209 Sum_probs=132.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeecC---CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260 512 CCHFSSDGKLLASSGHDRKVVLWNMDTL--QTESTPE---DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~---~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
.++.+.||++||+- .|..|.|=..++. ..+.+.. ...-.=..++|+||+..||.+...|+|++||+.... +..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 35677899988865 4667777655431 1222222 222335779999999999999999999999998533 211
Q ss_pred ec------cCCCCCeEEEEEcCCC-----CcEEEEEeCCCeEEEEeCC-----CCeeEEe------ecCCeeEEEEecCC
Q 047260 587 AY------TGHSSPIMSLDFHPKK-----TDLFCFCDNDNEIQYWSIN-----PFLCTHI------TKGGTAQVRFQPRI 644 (784)
Q Consensus 587 ~~------~~h~~~V~sl~~sp~~-----~~ll~sgs~dg~I~iwDl~-----~~~~~~~------~~~~v~~v~fsp~~ 644 (784)
.- ......|..+.|.+.. ...|++-..+|.++-|-+. .....+. +..+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11 1123567777776543 3345555567777766542 2222233 23688999999999
Q ss_pred CEEEEEECCCc-----------EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC------eEEEEeCCCCce
Q 047260 645 GQLLAAASDKV-----------VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN------LVKVWSMASGEC 707 (784)
Q Consensus 645 ~~Ll~~s~Dg~-----------I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd------~I~IwDl~t~~~ 707 (784)
+.|++++.... +..|.+-++. |..+.+....++ +..+|.+-+.+.
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~ 221 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------------PYYKQVTSSEDDITASSKRRGLLRIPSFKF 221 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCC------------------CcEEEccccCccccccccccceeeccceee
Confidence 98888876322 2222221111 111111111111 123343333322
Q ss_pred EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
..........|..+..+||+..|++...+|.|.+|++..-+..
T Consensus 222 fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 222 FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 2222345678999999999999999999999999999876554
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=9.6e-07 Score=94.08 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eeecCCCCCCeEEEEEccCCCEEEEE---eCCCeEEEEcCCCCc
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATA---SVDKSVRLWDAANPN 582 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fspdg~~Latg---s~Dg~I~IWdl~~~~ 582 (784)
+..+.+++++++||++..+....++++..... .... .-...-+++.|..+...+..+ ++...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 55566788899999998888877777654332 2221 223334455555555444444 4445566666654
Q ss_pred ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
.+.....||-+.++.|+|+||+. ++++++.|..|++-.......+.. |+.-|..+++.++ ..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 34566779999999999999986 888999999999988765433322 4456777777765 45899999999999
Q ss_pred EECCCCeEEEEEe
Q 047260 659 FDIETDRQTHSLQ 671 (784)
Q Consensus 659 wDl~t~~~i~~l~ 671 (784)
||+++++.++++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999887664
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=3.8e-07 Score=91.93 Aligned_cols=193 Identities=10% Similarity=0.123 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------------eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT------------ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~------------~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
|+.+.|+.+ ..|+++..++.+..+...++.+ .+.+..|.++-.+-..+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555555533 3566666666555554433222 222223433333333333567799999999999999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-----NDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~ 649 (784)
.+...............-.+.++...++ ++.++. .-+..+.|+++..+.+...+ ..+.+++-+|....+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752211111111111111222222222 222221 12456677777644432222 34888888887776655
Q ss_pred E-ECCCcEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCC
Q 047260 650 A-ASDKVVSIFDIETDR-QTHSLQGHAELVNYICWDT-NGDYLASVSQN-LVKVWSMAS 704 (784)
Q Consensus 650 ~-s~Dg~I~IwDl~t~~-~i~~l~~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t 704 (784)
+ +.||.|.+||.++.. +...++.|+.+|..+-|+| ++..|+++++| .+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4 558999999999874 3344567999999999998 56677777755 999999765
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=6.8e-07 Score=103.08 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=166.1
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCC-------CeEEEEc
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVD-------KSVRLWD 577 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~D-------g~I~IWd 577 (784)
.-+.|.+++|.+....+..|+..|.+.-+-....+....+..|. ..|..+..... -+++.+.. +-+-++|
T Consensus 53 ~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls~~alr~~~r~gl~~~~ 130 (1118)
T KOG1275|consen 53 SYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLSKTALRATTRQGLPVFD 130 (1118)
T ss_pred ccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeeeHHHhhhhhccCceeec
Confidence 44568888888777777777777766554444333333333232 11111111111 12222111 1123333
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe-eEEEEecCCCEEEEEECCCcE
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT-AQVRFQPRIGQLLAAASDKVV 656 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v-~~v~fsp~~~~Ll~~s~Dg~I 656 (784)
........ -...+.. +...++.|+--..+..+|+++.+..+...-.. .+..+..+++.+++|...|+|
T Consensus 131 ~~~~s~~~--------M~~~~~~---~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V 199 (1118)
T KOG1275|consen 131 FTCPSMTK--------MASSLHM---GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTV 199 (1118)
T ss_pred ccCCCHHH--------HHHHhcc---CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceE
Confidence 33221000 0111111 23356667777788889999877766655222 123334456788888899999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----------CCeEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260 657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----------QNLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----------dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd 726 (784)
.+-|.++.+.++++..|.+.|..+.. .|++|++|+ |..|+|||++.-+.+.-+.-+.++ .-+.|+|.
T Consensus 200 ~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 200 FLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPS 276 (1118)
T ss_pred EeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccc
Confidence 99999999999999999999987654 588888876 237999999987766655544333 55678887
Q ss_pred C-CEEEEEECCCeEEEEECC---CCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 727 Y-STLLVVGGISSLELWNMA---ENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 727 g-~~L~s~s~dg~I~Iwdl~---~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
- ..+++++..|...+-|.. +...- .+......+.++++++.+..++.|..+|.|.+|-
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5 358888889999999843 32211 2223344599999999999999999999999993
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.7e-06 Score=88.11 Aligned_cols=249 Identities=13% Similarity=0.145 Sum_probs=150.5
Q ss_pred EEEEECCCCceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260 531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609 (784)
Q Consensus 531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~ 609 (784)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++.. +...+..+ ..+++++|.-++.+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 67777767777777778889999999999766 78889999999999999865 66666666 78999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeEE------eecCCeeEEE------EecCCCEEEEEECCCcEEEEECCC--CeEEEEEe-CCC
Q 047260 610 FCDNDNEIQYWSINPFLCTH------ITKGGTAQVR------FQPRIGQLLAAASDKVVSIFDIET--DRQTHSLQ-GHA 674 (784)
Q Consensus 610 sgs~dg~I~iwDl~~~~~~~------~~~~~v~~v~------fsp~~~~Ll~~s~Dg~I~IwDl~t--~~~i~~l~-~h~ 674 (784)
.|..+|.|.|||++..+... ....++..++ ..+.++.++....+ +..|++.- +.....++ +..
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence 99999999999998532211 1113333333 22334444444332 33444321 11111111 123
Q ss_pred CCEEEEEEcCCCCEE-EEEeCC----eEE----EEeCCCCceEEEecc-C-CCce------EEEEEecCCCEEEEEECC-
Q 047260 675 ELVNYICWDTNGDYL-ASVSQN----LVK----VWSMASGECIQELSS-N-GNQF------HSCVFHPSYSTLLVVGGI- 736 (784)
Q Consensus 675 ~~V~sl~~spdg~~L-asgsdd----~I~----IwDl~t~~~i~~l~~-~-~~~I------~sl~fspdg~~L~s~s~d- 736 (784)
+...++..++..+.+ ++.-.+ .++ --|..+|..+..... + +..- ..+.-.++..+|+..+.+
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 444455555533433 333221 111 123334443332221 1 1111 112223444555555444
Q ss_pred CeEEEEECCCCceEEecccCCceEEEEEeCC--CCEEEEEECCCcEEEeC
Q 047260 737 SSLELWNMAENKSMTIAAHENIISALAQSPV--TGMVASASHDSSVKLWK 784 (784)
Q Consensus 737 g~I~Iwdl~~~~~~~~~~h~~~V~slafspd--g~~LaSgs~DG~V~IWd 784 (784)
+.+.+||..+.+.+.-...+.+|.+++.... +.+|++-. |..|+||+
T Consensus 411 n~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 6899999999998866666788988886643 33666654 55677764
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.58 E-value=6.3e-07 Score=90.33 Aligned_cols=164 Identities=12% Similarity=0.133 Sum_probs=108.3
Q ss_pred EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeecCCCCCCeEEEEEccCCCEEEEEeC-----CCe
Q 047260 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT-ESTPEDHKSVVTDVRFRPNSSQLATASV-----DKS 572 (784)
Q Consensus 499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l~~h~~~It~i~fspdg~~Latgs~-----Dg~ 572 (784)
.+.++..|.+.-.+-+.+-.++.++++..||.+.+++.+.... ...+..-...-.+.++...++.|.++.. -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 3444455666555555556677899999999999999875211 1111111111122333334544444321 234
Q ss_pred EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEEEEecCC-CEE
Q 047260 573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQVRFQPRI-GQL 647 (784)
Q Consensus 573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v~fsp~~-~~L 647 (784)
.++|+++..+......... ..|.+++-+|....++++|+.||.+-+||.+... .+..++.++..+-|+|.. .+|
T Consensus 161 ~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 5677776544222222222 3499999999999999999999999999998753 335567889999999864 679
Q ss_pred EEEECCCcEEEEECCC
Q 047260 648 LAAASDKVVSIFDIET 663 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t 663 (784)
++++.||.+-.||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999765
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=1.6e-05 Score=82.22 Aligned_cols=210 Identities=12% Similarity=0.048 Sum_probs=131.9
Q ss_pred CCCeEEEEcCCCCcceeeeccCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCC
Q 047260 569 VDKSVRLWDAANPNFCSQAYTGH-SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIG 645 (784)
Q Consensus 569 ~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~ 645 (784)
.+|+|..||..+++..-..-.+. .....+..+ +++. .+++++.++.|..||..+++.+.... ..+... ....++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence 36889999998877443332211 122222222 2334 45556789999999999888776554 222221 234557
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-eCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCc---
Q 047260 646 QLLAAASDKVVSIFDIETDRQTHSL-QGHA---ELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQ--- 717 (784)
Q Consensus 646 ~Ll~~s~Dg~I~IwDl~t~~~i~~l-~~h~---~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~--- 717 (784)
.+++++.++.|+.+|.++++.+..+ .... ..........++..++++. ++.|..+|+++|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 7888888899999999999998884 3221 1112222223366666666 669999999999998888664322
Q ss_pred -------eEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 718 -------FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 718 -------I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|++++.|+.|.+||
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222334 78888888864444999998763 2223333332 356678888888999999886
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=3.6e-08 Score=112.45 Aligned_cols=200 Identities=13% Similarity=0.231 Sum_probs=151.9
Q ss_pred CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-eE
Q 047260 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-EI 617 (784)
Q Consensus 539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-~I 617 (784)
.+..++|..|....+|++|+-+.+.|+.|+..|.|++|++.++. ......+|.++|+.+.-+.+|..++.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchH
Confidence 45667788899999999999999999999999999999999977 56677899999999999999997777766555 67
Q ss_pred EEEeCCCC-eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-eC---CCCCEEEEEEcCCCCEEEEE
Q 047260 618 QYWSINPF-LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL-QG---HAELVNYICWDTNGDYLASV 692 (784)
Q Consensus 618 ~iwDl~~~-~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l-~~---h~~~V~sl~~spdg~~Lasg 692 (784)
.+|+.... ...+.+ ....++.|+.....-++|+......+||+.++.++.++ .+ ....-+++.|+|+..+++--
T Consensus 1170 aLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlnd 1248 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILND 1248 (1516)
T ss_pred HHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeC
Confidence 88998752 222222 34567788777666667777788999999998766552 22 22234778899988877642
Q ss_pred eCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 693 SQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 693 sdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
=.+||++..+.++.|.... ....-.|+|.|.-++.-+ .|||+++.+.+
T Consensus 1249 ----GvLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1249 ----GVLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred ----ceeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 2589999988888776543 223447999998887755 58999887655
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00012 Score=74.40 Aligned_cols=256 Identities=15% Similarity=0.138 Sum_probs=136.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS 597 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s 597 (784)
-|++++.|+..|.+++.+.+++.....+.....-=......+++..|..++.|++.+..|.++.. ++...+-..+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceecc
Confidence 47789999999999999999998887775433222233456688999999999999999999866 33333322233333
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEee--cCCeeE--EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260 598 LDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHIT--KGGTAQ--VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ 671 (784)
Q Consensus 598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~~--~~~v~~--v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~ 671 (784)
-+..|-...+++ +...|.|.--..++. ..+..+ .+++.. ++. +..+..++-||.+.-|| +.++.+..+.
T Consensus 141 P~i~~g~~sly~-a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLYA-AITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEEE-EeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 444553332333 333555544444433 111111 122211 122 23456666677777777 5555555443
Q ss_pred CCCCCEEE-EEEc-CCCCEEEEEeCC---------eEEEEeCCCCceEEEeccCCCceEEEEEe-cC---CCEEEEEECC
Q 047260 672 GHAELVNY-ICWD-TNGDYLASVSQN---------LVKVWSMASGECIQELSSNGNQFHSCVFH-PS---YSTLLVVGGI 736 (784)
Q Consensus 672 ~h~~~V~s-l~~s-pdg~~Lasgsdd---------~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-pd---g~~L~s~s~d 736 (784)
..++|.. -+-+ |....|+.+.++ .-.+|...+|...+.+.... ....++ |. .+++..++.|
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~d 291 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGD 291 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCC
Confidence 2223221 1122 333444444444 23456555553333322111 011111 11 3457778889
Q ss_pred CeEEEEECCCCceEEecccCCceEEE---E-----Ee-CC--CCEEEEEECCCcEEEeC
Q 047260 737 SSLELWNMAENKSMTIAAHENIISAL---A-----QS-PV--TGMVASASHDSSVKLWK 784 (784)
Q Consensus 737 g~I~Iwdl~~~~~~~~~~h~~~V~sl---a-----fs-pd--g~~LaSgs~DG~V~IWd 784 (784)
|++.|.-.+.. ......|.+.+-.+ . |+ |. +.+|+.|+.|..|+-||
T Consensus 292 gkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 292 GKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred CcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 98888744322 22333333322222 1 11 21 34677889999999986
No 312
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=6.8e-07 Score=91.86 Aligned_cols=230 Identities=18% Similarity=0.320 Sum_probs=145.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee----eeccCCC------------CCeEEEEEcCC-CCcEEEE
Q 047260 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS----QAYTGHS------------SPIMSLDFHPK-KTDLFCF 610 (784)
Q Consensus 548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~----~~~~~h~------------~~V~sl~~sp~-~~~ll~s 610 (784)
....|+++.|...|.||++|...|.|.+|.-+....|. ..+.+|. ..|..|.|..+ +..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999766533222 2234443 34777887654 4556667
Q ss_pred EeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEE--------E-CCCcEEEEECCCCeEEEEE-eCCCCCEEEE
Q 047260 611 CDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAA--------A-SDKVVSIFDIETDRQTHSL-QGHAELVNYI 680 (784)
Q Consensus 611 gs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~--------s-~Dg~I~IwDl~t~~~i~~l-~~h~~~V~sl 680 (784)
.+.|.+|++|.+.............+.-.-+|.++-+.+. + .|..|... +.+.. ..|.-.|+++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiNSi 178 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHINSI 178 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEeeee
Confidence 7789999999986532222211111111112222111110 0 01111111 11122 3588889999
Q ss_pred EEcCCCCEEEEEeCCeEEEEeCCCCc---eEEEeccCC-----CceEEEEEecCCC-EEEEEECCCeEEEEECCCCc---
Q 047260 681 CWDTNGDYLASVSQNLVKVWSMASGE---CIQELSSNG-----NQFHSCVFHPSYS-TLLVVGGISSLELWNMAENK--- 748 (784)
Q Consensus 681 ~~spdg~~Lasgsdd~I~IwDl~t~~---~i~~l~~~~-----~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~--- 748 (784)
.|..|...++++.+=.|.+|++.--. .+..++.|. ..|++..|+|... .+...+..|.|++-|++...
T Consensus 179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 99999998888766699999986432 233334443 3478889999764 45666778999999998432
Q ss_pred --eE----E--------ecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 749 --SM----T--------IAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 749 --~~----~--------~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+. . +..-...|..+.|+++|++|++-+. -+|+|||
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 1 1122457889999999999997654 5799997
No 313
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.51 E-value=1e-07 Score=63.35 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=24.6
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHhc
Q 047260 10 KMLDVYIHDYFLKRKLHASAKAFMTEG 36 (784)
Q Consensus 10 ~~l~~yiydy~~k~~~~~~a~~~~~e~ 36 (784)
+.||.+|||||+++|+.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999985
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.49 E-value=7.8e-05 Score=82.65 Aligned_cols=257 Identities=13% Similarity=0.140 Sum_probs=151.6
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260 516 SSDGKLLASSG---------HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 516 spdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888777642 346799999998766555433 67889999999999999885 57899999877643322
Q ss_pred eccCC----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEE------------------------------
Q 047260 587 AYTGH----------------SSPIMSLDFHPKKTDLFCFCDNDNEIQYW------------------------------ 620 (784)
Q Consensus 587 ~~~~h----------------~~~V~sl~~sp~~~~ll~sgs~dg~I~iw------------------------------ 620 (784)
+..+. -+.-..+.|+|++..+++.--++..|..+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 12235688999998777766555444333
Q ss_pred -----eCCCCeeE--Eee------cCCeeEEEEecCCCEEEEEEC--C---CcEEEEECCCCeEEEEEeC-CCCCE---E
Q 047260 621 -----SINPFLCT--HIT------KGGTAQVRFQPRIGQLLAAAS--D---KVVSIFDIETDRQTHSLQG-HAELV---N 678 (784)
Q Consensus 621 -----Dl~~~~~~--~~~------~~~v~~v~fsp~~~~Ll~~s~--D---g~I~IwDl~t~~~i~~l~~-h~~~V---~ 678 (784)
|+.+.+.. ... ..-+..+.|.+++..+++.-. + -.+.++|..++.....+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33322211 100 012456778888774444433 2 3466778877644333221 22222 2
Q ss_pred EEEEc-CCCCEEEEE-e-CC--eEEEEeCCCCceEEEeccCCCceEE-EEEecCCCEEEEEECC-----CeEEEEECC-C
Q 047260 679 YICWD-TNGDYLASV-S-QN--LVKVWSMASGECIQELSSNGNQFHS-CVFHPSYSTLLVVGGI-----SSLELWNMA-E 746 (784)
Q Consensus 679 sl~~s-pdg~~Lasg-s-dd--~I~IwDl~t~~~i~~l~~~~~~I~s-l~fspdg~~L~s~s~d-----g~I~Iwdl~-~ 746 (784)
.+.|. +++..++.. . +| .|.+++...+.. ..+....-.|.. +.|+++++.|+..+.. ..|+..++. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 44554 665544443 3 44 788888877763 356555566744 6788888776655543 256667777 6
Q ss_pred CceEEecccCCceEEEEEeCCCCEEEEEE
Q 047260 747 NKSMTIAAHENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 747 ~~~~~~~~h~~~V~slafspdg~~LaSgs 775 (784)
+....+....+.-..+.|||++++++..+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 66666655544446899999999777544
No 315
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.46 E-value=2e-05 Score=89.17 Aligned_cols=215 Identities=12% Similarity=0.192 Sum_probs=123.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE-eCCCCe
Q 047260 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW-SINPFL 626 (784)
Q Consensus 548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw-Dl~~~~ 626 (784)
.......+.++|+++++++ +.||...|+...... ... .+....++|.+.+ -+++-.....|.++ ++.. .
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~-~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NKA----FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN-E 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EEE----EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE--
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--ccc----cCceeEEEEecCc--cEEEEECCCeEEEEEcCcc-c
Confidence 3445788999999999888 457788888743322 111 2345678888844 46666668889996 3322 2
Q ss_pred eEEeecCC--eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 047260 627 CTHITKGG--TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS 704 (784)
Q Consensus 627 ~~~~~~~~--v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t 704 (784)
....+..+ +..+-. |..|++.+ ++.|.+||+.+++.++.+... +|..|.|+++|.+++..+++.+.|++...
T Consensus 101 ~~k~i~~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp TT-----SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cceEEcCCcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 21122222 233322 55555554 458999999999999998743 48999999999999999998888877543
Q ss_pred C-----------ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEE
Q 047260 705 G-----------ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVAS 773 (784)
Q Consensus 705 ~-----------~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaS 773 (784)
. ..+..+..-...|.+.+|..+ .++..+.. .|+. +-.|....+..-+.++.=+.+.+..+.|+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 3 123333332467899999877 45544444 6666 556666666555677888888887788999
Q ss_pred EECCCcEEEe
Q 047260 774 ASHDSSVKLW 783 (784)
Q Consensus 774 gs~DG~V~IW 783 (784)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 9999888764
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=3.6e-07 Score=95.29 Aligned_cols=158 Identities=16% Similarity=0.229 Sum_probs=122.4
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC----cceee
Q 047260 512 CCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP----NFCSQ 586 (784)
Q Consensus 512 ~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~----~~~~~ 586 (784)
.|+|+-+-. +-++.+.+-.|-+-|++++.. ..| ..++.|.++.|...+++++.|+..|.|.++|++.. ..+.
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a- 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA- 292 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-
Confidence 346664321 224556677799999987654 333 26778999999998999999999999999999875 2233
Q ss_pred eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEeecCCeeEEE-----EecCCCEEEEEECCCcEEE
Q 047260 587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC---THITKGGTAQVR-----FQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~---~~~~~~~v~~v~-----fsp~~~~Ll~~s~Dg~I~I 658 (784)
...-|.+.|+++.........+.+.+-+|.|++||++..++ +...++++...+ +.+..+.+++++.|...+|
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 33458899999988774455777788899999999998777 788888886644 5667788999999999999
Q ss_pred EECCCCeEEEEEeC
Q 047260 659 FDIETDRQTHSLQG 672 (784)
Q Consensus 659 wDl~t~~~i~~l~~ 672 (784)
|.++.+..+.++.-
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999998888764
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=5.7e-06 Score=94.88 Aligned_cols=181 Identities=21% Similarity=0.284 Sum_probs=130.1
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
-.+.++|++++ +++|+.|..+|.|++++... .. .+...|... ..+|.++++|+.||+|.|..+.+...+.
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34568888887 67999999999999999873 33 333455544 5689999999999999999988766332
Q ss_pred eeccCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeCC---C--CeeEEeecCCeeEEEEecCCCEEEEEECCCcE
Q 047260 586 QAYTGHSSPIMSLDFHPK----KTDLFCFCDNDNEIQYWSIN---P--FLCTHITKGGTAQVRFQPRIGQLLAAASDKVV 656 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~----~~~ll~sgs~dg~I~iwDl~---~--~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I 656 (784)
. .....++.+|+++|+ ....+++|+..| +.++.-+ . .......+++|.++.|.-+ +++-..|--|
T Consensus 108 ~--~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv 181 (846)
T KOG2066|consen 108 Q--YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGV 181 (846)
T ss_pred e--EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCc
Confidence 2 234578999999998 334688888888 7776543 1 1234555689999999643 5666666679
Q ss_pred EEEECCCCeEEEEEeCCCCCE------EEEEEcCCCCEEEEEeCCeEEEEeCC
Q 047260 657 SIFDIETDRQTHSLQGHAELV------NYICWDTNGDYLASVSQNLVKVWSMA 703 (784)
Q Consensus 657 ~IwDl~t~~~i~~l~~h~~~V------~sl~~spdg~~Lasgsdd~I~IwDl~ 703 (784)
+|||+.+++.+..+......+ ..+.|.++.+ |+.|=.++|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999999998887776433333 3467766554 555656678888877
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=4.5e-05 Score=91.21 Aligned_cols=237 Identities=11% Similarity=0.181 Sum_probs=148.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC----CCc
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA----NPN 582 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~----~~~ 582 (784)
.+.|.++.|..++.-++.+..+|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-. ..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 467999999999999999999999999988865443 333456889999999999999999888887664321 111
Q ss_pred ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCCCEEEEEEC----C-C
Q 047260 583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRIGQLLAAAS----D-K 654 (784)
Q Consensus 583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~~~Ll~~s~----D-g 654 (784)
.. ..-....+....+-|-.....+= |+ .|.....+........ ....+-+.|.|--||.++++... + .
T Consensus 147 ~L-~~d~~~~sk~v~VGwGrkeTqfr--gs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 147 PL-DADDERKSKFVNVGWGRKETQFR--GS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cc-ccccccccccceecccccceeee--cc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 11 00001112233344433222111 11 1111111111111100 12245567899999988887432 4 7
Q ss_pred cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCCC---CceEEEeccCCCceEEEEEecCC
Q 047260 655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----QNLVKVWSMAS---GECIQELSSNGNQFHSCVFHPSY 727 (784)
Q Consensus 655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~t---~~~i~~l~~~~~~I~sl~fspdg 727 (784)
.|+|||.+ +..-..-......-.+++|-|.|..+++.. ++.|.+|.-+. ++....+......|..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 89999987 443333333344557899999999998864 44799998432 33333344444558999999999
Q ss_pred CEEEEEE---CCCeEEEEECCCCce
Q 047260 728 STLLVVG---GISSLELWNMAENKS 749 (784)
Q Consensus 728 ~~L~s~s---~dg~I~Iwdl~~~~~ 749 (784)
..|++.. ....|++|-+.+..-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEE
Confidence 9888843 334599998877543
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=7e-05 Score=86.73 Aligned_cols=203 Identities=13% Similarity=0.158 Sum_probs=142.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCC-eEEEEEccCCCEEEEEeCCC-----eEEEEcCCCCc
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV-VTDVRFRPNSSQLATASVDK-----SVRLWDAANPN 582 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-It~i~fspdg~~Latgs~Dg-----~I~IWdl~~~~ 582 (784)
.|+| |++.+..+|.|+.+|.|.+.+-. .+.+..+..+... |..+....+..+|++.+.|+ .|+|||++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 46778899999999999888754 5555777777777 44444444446888887765 48999987431
Q ss_pred -----cee---eecc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-------CeeEEeecCCeeEEEEecC
Q 047260 583 -----FCS---QAYT----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-------FLCTHITKGGTAQVRFQPR 643 (784)
Q Consensus 583 -----~~~---~~~~----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-------~~~~~~~~~~v~~v~fsp~ 643 (784)
.+. +.+. ....++.+++.+.+- ..+++|-.+|.|..+.=+- .......+.+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 2111 235678889998874 4778888999999885331 1222334588999999988
Q ss_pred CCEEEEEECCCcEEEEECCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec-cCC
Q 047260 644 IGQLLAAASDKVVSIFDIETDRQ-THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS-SNG 715 (784)
Q Consensus 644 ~~~Ll~~s~Dg~I~IwDl~t~~~-i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~-~~~ 715 (784)
+..++-+..-..|.+|.+....+ ...+..|...++|..+++...-+++++...|.+||......-..+. ++.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 88744445557889999884443 3446678889999999887666777888899999998766666665 443
No 320
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.34 E-value=0.00073 Score=76.52 Aligned_cols=241 Identities=13% Similarity=0.115 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC-----------eE
Q 047260 510 VTCCHFSSDGKLLASS-GHD----RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK-----------SV 573 (784)
Q Consensus 510 V~~l~fspdg~~Lasg-s~D----g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg-----------~I 573 (784)
+..+.+||||++||.+ +.. ..|+|+|+++++.+....... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998865 333 359999999997765431111 123399999988877765443 37
Q ss_pred EEEcCCCCcce-eeeccCCCCC--eEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCC-------eeEEeecCCeeEEEE
Q 047260 574 RLWDAANPNFC-SQAYTGHSSP--IMSLDFHPKKTDLFCFCDND---NEIQYWSINPF-------LCTHITKGGTAQVRF 640 (784)
Q Consensus 574 ~IWdl~~~~~~-~~~~~~h~~~--V~sl~~sp~~~~ll~sgs~d---g~I~iwDl~~~-------~~~~~~~~~v~~v~f 640 (784)
+.|++.+.... ...+...... ...+..++++..+++..... ..|++.|+... .++......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888775432 2334433333 56888999999888766544 35888888763 222222233333232
Q ss_pred ecCCCEEEEEEC----CCcEEEEECCCCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEeCCCCceEE
Q 047260 641 QPRIGQLLAAAS----DKVVSIFDIETDRQ---THSLQGHAELVNYICWDTNGDYLASVS--QN--LVKVWSMASGECIQ 709 (784)
Q Consensus 641 sp~~~~Ll~~s~----Dg~I~IwDl~t~~~---i~~l~~h~~~V~sl~~spdg~~Lasgs--dd--~I~IwDl~t~~~i~ 709 (784)
+. +..+++.+. .+.|...++..... ...+..+...+.-..+...+.+|+... +. .|+++++..+....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 33 444444433 46788888887652 334555655433333334444444433 33 89999999444444
Q ss_pred Eecc-CCCceEEEEEecCCCEEEEEEC-C---CeEEEEECCCCceEEe
Q 047260 710 ELSS-NGNQFHSCVFHPSYSTLLVVGG-I---SSLELWNMAENKSMTI 752 (784)
Q Consensus 710 ~l~~-~~~~I~sl~fspdg~~L~s~s~-d---g~I~Iwdl~~~~~~~~ 752 (784)
.+.. ..+.|..+...++++.+...-. - ++|+.||+.+++...+
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 4443 3344555555566555443332 2 5899999998876543
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.32 E-value=0.00022 Score=82.60 Aligned_cols=257 Identities=9% Similarity=0.066 Sum_probs=149.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCC------CeE--EEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccC
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKS------VVT--DVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTG 590 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------~It--~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~ 590 (784)
+..+++++.++.|+.+|..+++.+..+..... .+. .+... ++..++.++.++.|..+|.++++..-+.-..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777889999999999988877653322 110 11111 2267888889999999999998744332211
Q ss_pred CCC----Ce-EEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCeeEEeecCC----------------------
Q 047260 591 HSS----PI-MSLDFHPKKTDLFCFCD---------NDNEIQYWSINPFLCTHITKGG---------------------- 634 (784)
Q Consensus 591 h~~----~V-~sl~~sp~~~~ll~sgs---------~dg~I~iwDl~~~~~~~~~~~~---------------------- 634 (784)
... .+ ....+. +. +++.++ .++.|..+|..+++.+-.....
T Consensus 140 ~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 110 01 111222 12 333443 3678899999887776554321
Q ss_pred -e-eEEEEecCCCEEEEEECCC------------------cEEEEECCCCeEEEEEeCCCCCE------EEEEEc----C
Q 047260 635 -T-AQVRFQPRIGQLLAAASDK------------------VVSIFDIETDRQTHSLQGHAELV------NYICWD----T 684 (784)
Q Consensus 635 -v-~~v~fsp~~~~Ll~~s~Dg------------------~I~IwDl~t~~~i~~l~~h~~~V------~sl~~s----p 684 (784)
+ ....+.+.++.+++++.++ .|.-+|+++++.+..+..-...+ ....+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 1234555667888887665 79999999999988765311111 001111 2
Q ss_pred CCC---EEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE------------------ECCCeEEEE
Q 047260 685 NGD---YLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV------------------GGISSLELW 742 (784)
Q Consensus 685 dg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~------------------s~dg~I~Iw 742 (784)
++. ++++++ ++.+..+|.++|+.+....... ..+..+| ..++++ ..+|.|...
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 333 455555 5599999999999887764321 1123333 233332 235788889
Q ss_pred ECCCCceEEecccC---------CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 743 NMAENKSMTIAAHE---------NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 743 dl~~~~~~~~~~h~---------~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
|+.+++.+-..... .+...-...-.+.+|++++.||.|+.+|
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 99998877222111 1111101112456788888899887764
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.30 E-value=2.6e-06 Score=61.92 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=36.1
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd 535 (784)
..+..+++|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=9.2e-05 Score=85.12 Aligned_cols=222 Identities=12% Similarity=0.073 Sum_probs=133.4
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCceeeecC-CCCCCeEEEE-------------------EccCCCEEEEE-eCCCeEEE
Q 047260 518 DGKLLASSGH-DRKVVLWNMDTLQTESTPE-DHKSVVTDVR-------------------FRPNSSQLATA-SVDKSVRL 575 (784)
Q Consensus 518 dg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~-------------------fspdg~~Latg-s~Dg~I~I 575 (784)
||+||+.-.. +..|...+++..++...+. .....+..++ +.+||+.+... -..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888887653 5567777776554433332 1112222233 33455444222 22456667
Q ss_pred EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD---NDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs---~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~ 652 (784)
.|.++.+.......+ .....+++++++.++++++. ....+...+.........+.-.. ...+.++|++.++ .
T Consensus 220 ID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V--~ 294 (635)
T PRK02888 220 VDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI--G 294 (635)
T ss_pred EECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--C
Confidence 777765433332222 24466788999987777762 23344444433222222111000 0123456776665 3
Q ss_pred CCcEEEEECCC-----CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCce------------EEEecc
Q 047260 653 DKVVSIFDIET-----DRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGEC------------IQELSS 713 (784)
Q Consensus 653 Dg~I~IwDl~t-----~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~------------i~~l~~ 713 (784)
++.|.++|.++ .+.+..+. -......+.++|||+++++++ +++|.|+|+.+.+. +.+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 67899999998 34555554 445567899999999999887 44999999987542 333333
Q ss_pred CCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
+..-...+|.++|....+..-|..|..||+..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23335678999998888888899999999876
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.00056 Score=79.21 Aligned_cols=227 Identities=11% Similarity=0.092 Sum_probs=135.3
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecCCCCCC--eEEEEEcc--CCCEEEEEe---------CCCeEEEEcCCCCcceee
Q 047260 520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSV--VTDVRFRP--NSSQLATAS---------VDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--It~i~fsp--dg~~Latgs---------~Dg~I~IWdl~~~~~~~~ 586 (784)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+..++.++ .++.|..+|..+++..-+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57777888999999999999998877543321 01111112 224455554 367899999988874332
Q ss_pred eccCCCC-------------------Ce-EEEEEcCCCCcEEEEEeCCC------------------eEEEEeCCCCeeE
Q 047260 587 AYTGHSS-------------------PI-MSLDFHPKKTDLFCFCDNDN------------------EIQYWSINPFLCT 628 (784)
Q Consensus 587 ~~~~h~~-------------------~V-~sl~~sp~~~~ll~sgs~dg------------------~I~iwDl~~~~~~ 628 (784)
....... .| ....+.+.+. +++.+..++ .|.-+|.++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2211110 01 1223333333 455555444 7899999988887
Q ss_pred EeecCCe---------eEEEEe----cCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 047260 629 HITKGGT---------AQVRFQ----PRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV 692 (784)
Q Consensus 629 ~~~~~~v---------~~v~fs----p~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg 692 (784)
-.+.... ....+. -++. .+++++.+|.+..+|.++++.+...... ...+..+| +.+++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 6654211 001111 1232 5777788999999999999988776421 11123333 2222211
Q ss_pred ------------------eCCeEEEEeCCCCceEEEeccCC--------CceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 693 ------------------SQNLVKVWSMASGECIQELSSNG--------NQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 693 ------------------sdd~I~IwDl~t~~~i~~l~~~~--------~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
.++.|...|+.+|+.+.+..... .....-...-.+..|++++.||.|+.+|..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 13478899999999887775431 1111111122456789999999999999999
Q ss_pred CceEE
Q 047260 747 NKSMT 751 (784)
Q Consensus 747 ~~~~~ 751 (784)
++.+-
T Consensus 426 G~~lW 430 (488)
T cd00216 426 GKELW 430 (488)
T ss_pred Cceee
Confidence 99883
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00014 Score=84.28 Aligned_cols=201 Identities=10% Similarity=0.225 Sum_probs=136.1
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-C----eEEEEeCCC------
Q 047260 556 RFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-N----EIQYWSINP------ 624 (784)
Q Consensus 556 ~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-g----~I~iwDl~~------ 624 (784)
+|++.+..++.|+.||.|.+.+-. -.....+..+...|...-+.-++..++++.+.| + .|+|||++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456778899999999988888743 223456666666644444555554555555544 3 699999963
Q ss_pred CeeE---Eee-------cCCeeEEEEecCCCEEEEEECCCcEEEEECCC----CeEEEEEeCCCCCEEEEEEcCCCCE-E
Q 047260 625 FLCT---HIT-------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIET----DRQTHSLQGHAELVNYICWDTNGDY-L 689 (784)
Q Consensus 625 ~~~~---~~~-------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t----~~~i~~l~~h~~~V~sl~~spdg~~-L 689 (784)
..++ +.+ ..++.+++++.+-..+++|..+|.|..+.-.- +...........+|+.+.+..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 111 14567889999988999999999999985321 2222222335679999999988887 6
Q ss_pred EEEeCCeEEEEeCCCCc-eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-eEEec-ccCCce
Q 047260 690 ASVSQNLVKVWSMASGE-CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-SMTIA-AHENII 759 (784)
Q Consensus 690 asgsdd~I~IwDl~t~~-~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-~~~~~-~h~~~V 759 (784)
+++....|.+|.+.... .+..+..++..++|..+++....+++++. ..|.+|+..... +..+. +|....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 66667789999988444 35557888889999999887664555554 469999987644 33554 555443
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=2.8e-05 Score=89.40 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=130.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-
Q 047260 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC- 627 (784)
Q Consensus 549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~- 627 (784)
...++|++++ ++.|+.|+.+|.|++++.... . .....|... ..+|. .+++|+.||.|.|..+-+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc--c-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3567777775 678999999999999998642 1 333344433 33444 899999999999998876544
Q ss_pred -EEeecCCeeEEEEecC-----CCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 047260 628 -THITKGGTAQVRFQPR-----IGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKV 699 (784)
Q Consensus 628 -~~~~~~~v~~v~fsp~-----~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~I 699 (784)
...++.++.+|+++|+ .+.+++|+..| +.++.-+-. +.-..+....++|.+++|. |.++|-++|.-|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 4566789999999998 46788888888 777764321 1112455577899999996 78999999989999
Q ss_pred EeCCCCceEEEeccCCCce------EEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 700 WSMASGECIQELSSNGNQF------HSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 700 wDl~t~~~i~~l~~~~~~I------~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
||+.+++.+..+......+ ..+.|.++.+ |+. |...+|+|..++.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK 234 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence 9999998887776544333 4566776643 444 4444788887773
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.27 E-value=0.00021 Score=75.85 Aligned_cols=184 Identities=16% Similarity=0.120 Sum_probs=127.3
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEECC-CCceeeecCCCCCCeEEEEEccCCCEEEEEeC-----------------
Q 047260 513 CHFSSDGKLLASSG-----HDRKVVLWNMD-TLQTESTPEDHKSVVTDVRFRPNSSQLATASV----------------- 569 (784)
Q Consensus 513 l~fspdg~~Lasgs-----~Dg~I~IWd~~-t~~~~~~l~~h~~~It~i~fspdg~~Latgs~----------------- 569 (784)
-+||+||++|++.- ..|.|-|||.. +.+.+.++..|.-.-..+.+.||++.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 47999999998853 45889999999 78888999888888889999999988887621
Q ss_pred -CCeEEEEcCCCCcceee-ec--cCCCCCeEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCee--------EEe
Q 047260 570 -DKSVRLWDAANPNFCSQ-AY--TGHSSPIMSLDFHPKKTDLFCFCDNDN-------EIQYWSINPFLC--------THI 630 (784)
Q Consensus 570 -Dg~I~IWdl~~~~~~~~-~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg-------~I~iwDl~~~~~--------~~~ 630 (784)
+-++.+.|..+++...+ .+ ..|...|..+++.+++. +++.+-..| .|.+++...... ...
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR 214 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence 22345556666663332 23 34677899999999876 333333332 244444433111 123
Q ss_pred ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 047260 631 TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVW 700 (784)
Q Consensus 631 ~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~Iw 700 (784)
+.+-+-+|+++.++..+++.+- .+.+.+||..+++.+.... -..+..++..+++ ++++.+.+.+...
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCccEEEc
Confidence 3467889999999998877776 7899999999998887653 3345666666666 6666666654333
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=3.7e-06 Score=87.93 Aligned_cols=147 Identities=15% Similarity=0.257 Sum_probs=110.8
Q ss_pred EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----e--eEEeecCCeeE
Q 047260 565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-----L--CTHITKGGTAQ 637 (784)
Q Consensus 565 atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-----~--~~~~~~~~v~~ 637 (784)
++.+.+-.|-+-|++++- ...+. ..+.|.++.|...++ ++..|..+|.|..+|++.. . ....+...+++
T Consensus 228 fs~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 555667778888888754 22232 567899999987665 8888999999999999853 2 23345577888
Q ss_pred EEEec-CCCEEEEEECCCcEEEEECCCCeE---EEEEeCCCCCEEEEE--EcCCCCEEEEEeCC-eEEEEeCCCCceEEE
Q 047260 638 VRFQP-RIGQLLAAASDKVVSIFDIETDRQ---THSLQGHAELVNYIC--WDTNGDYLASVSQN-LVKVWSMASGECIQE 710 (784)
Q Consensus 638 v~fsp-~~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~~h~~~V~sl~--~spdg~~Lasgsdd-~I~IwDl~t~~~i~~ 710 (784)
+..-. ++.+|++.+.+|.|++||++.-++ +..+.+|-..-.-+- ..+...++++++|| ..+||.++++..+.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 77555 677888888999999999998766 888888876444333 34566677778877 999999999999998
Q ss_pred eccCC
Q 047260 711 LSSNG 715 (784)
Q Consensus 711 l~~~~ 715 (784)
++...
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 87543
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00018 Score=81.93 Aligned_cols=268 Identities=9% Similarity=0.101 Sum_probs=153.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
|...|.--+++..+++|+.|+.-|.|++|+-..+.....-. +..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44445556667788999999999999999988765543332 34455666778888888899999999999988753211
Q ss_pred -----eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------eeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260 585 -----SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-------LCTHITKGGTAQVRFQPRIGQLLAAAS 652 (784)
Q Consensus 585 -----~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-------~~~~~~~~~v~~v~fsp~~~~Ll~~s~ 652 (784)
...-..|...|++++|++++. -+++|+..|.|.+-.++.. ..+......|..+.+. ..+|++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 111224788999999999987 6778999999998888761 2222333444444432 344444443
Q ss_pred CCcEEEEECCCCeEEEEEe-C-CCC-CEEEEEEcCC----CCEEEEEeCCeEEEEeCCC-CceEEEecc-----------
Q 047260 653 DKVVSIFDIETDRQTHSLQ-G-HAE-LVNYICWDTN----GDYLASVSQNLVKVWSMAS-GECIQELSS----------- 713 (784)
Q Consensus 653 Dg~I~IwDl~t~~~i~~l~-~-h~~-~V~sl~~spd----g~~Lasgsdd~I~IwDl~t-~~~i~~l~~----------- 713 (784)
-.. .+++.+.++ +..+- . .++ .-...||-|. ..-.+.++.-..|+|...- |+.+.+..-
T Consensus 189 ~r~-~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 189 TRC-ILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hhh-heeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCc
Confidence 222 233433222 11110 0 111 1233445443 2333444444567776542 444333210
Q ss_pred --CCC----------------ceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE
Q 047260 714 --NGN----------------QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 714 --~~~----------------~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs 775 (784)
+.+ ....+.+-. +..+++-+.-| |+|+|..+...+........|..++.+ ++-|++-.
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEee-cceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEe
Confidence 000 011111111 22455555555 889998888777666555667666654 44455555
Q ss_pred CCCcEEE
Q 047260 776 HDSSVKL 782 (784)
Q Consensus 776 ~DG~V~I 782 (784)
.|+.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 6665544
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.23 E-value=0.00021 Score=85.72 Aligned_cols=230 Identities=14% Similarity=0.200 Sum_probs=135.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC--CC-
Q 047260 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI--NP- 624 (784)
Q Consensus 548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl--~~- 624 (784)
....|.++.|..+..-|+.+..+|.|.+-|..+.. ......-...|.+++|+||+. +++..+..++|.+-+- ..
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccch
Confidence 34689999999999999999999999999888754 233334467899999999988 5555555566655332 11
Q ss_pred -CeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----C-
Q 047260 625 -FLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-----Q- 694 (784)
Q Consensus 625 -~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-----d- 694 (784)
.+.+..- .+....+-|-.....+ - +..|.....+............-.+.-+.|+|--||.|+++.. +
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-r-gs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQF-R-GSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred hccccccccccccccceecccccceee-e-cchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1111000 0111112221111110 0 0111111111111000000001122335689999999999843 4
Q ss_pred CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC---CCeEEEEECCCCceE----EecccCCceEEEEEeCC
Q 047260 695 NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLELWNMAENKSM----TIAAHENIISALAQSPV 767 (784)
Q Consensus 695 d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~---dg~I~Iwdl~~~~~~----~~~~h~~~V~slafspd 767 (784)
..|+|||.. |..-.+-....+.-.+++|-|.|..+++... |+.|.+|.-+.-+.- ........|..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 489999977 4433222233344578999999998888755 457999986654322 22233445999999999
Q ss_pred CCEEEE---EECCCcEEEe
Q 047260 768 TGMVAS---ASHDSSVKLW 783 (784)
Q Consensus 768 g~~LaS---gs~DG~V~IW 783 (784)
+.+|++ ......|++|
T Consensus 301 sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CCceeeeecccccceEEEE
Confidence 999887 3344449998
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.22 E-value=0.00094 Score=73.02 Aligned_cols=266 Identities=15% Similarity=0.122 Sum_probs=135.0
Q ss_pred EEcCCCCEEEEEeC-CC--eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccC
Q 047260 514 HFSSDGKLLASSGH-DR--KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTG 590 (784)
Q Consensus 514 ~fspdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~ 590 (784)
+|.+||+.|+.++. || .+.+.|+.+++....-.+-........++++.+.|+-......|+-.|+++.+ ....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEEC
Confidence 56789976655544 54 57777888877665444322333356777888888777667789999999866 3344444
Q ss_pred CCCCeEEEEEc--CCCCcEEEEEeC----------------------CCeEEEEeCCCCeeEEeec--CCeeEEEEecCC
Q 047260 591 HSSPIMSLDFH--PKKTDLFCFCDN----------------------DNEIQYWSINPFLCTHITK--GGTAQVRFQPRI 644 (784)
Q Consensus 591 h~~~V~sl~~s--p~~~~ll~sgs~----------------------dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~ 644 (784)
...-+-...|. .++. .++.... ...|...|+.+++....+. .-+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 44555445553 3333 3332211 1245556777766555554 445788899988
Q ss_pred CEEEEEECCC-----cEEEEECCC-CeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe-----CC-eEEEEeCCCCceEEE
Q 047260 645 GQLLAAASDK-----VVSIFDIET-DRQTHSLQGHA--ELVNYICWDTNGDYLASVS-----QN-LVKVWSMASGECIQE 710 (784)
Q Consensus 645 ~~Ll~~s~Dg-----~I~IwDl~t-~~~i~~l~~h~--~~V~sl~~spdg~~Lasgs-----dd-~I~IwDl~t~~~i~~ 710 (784)
..+++-|.+| .-+||-+++ +...+.+..+. ..+..=-|.|||..|.--+ .+ .|.-+|+.+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 8877776533 136665543 33334443332 2445556899998776533 12 788888888765432
Q ss_pred eccCCCceEEEEEecCCCEEEEEECCC----------------eEEEEECCCCceEEecccCC-----------ceEEEE
Q 047260 711 LSSNGNQFHSCVFHPSYSTLLVVGGIS----------------SLELWNMAENKSMTIAAHEN-----------IISALA 763 (784)
Q Consensus 711 l~~~~~~I~sl~fspdg~~L~s~s~dg----------------~I~Iwdl~~~~~~~~~~h~~-----------~V~sla 763 (784)
... ........++++.+++-=+.|. -|+++++..+....+..|.. .=-...
T Consensus 280 ~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 MEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp EEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred EeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 222 2344556678887655444431 46678888777654444431 123578
Q ss_pred EeCCCCEEEEE-ECCCcEEEe
Q 047260 764 QSPVTGMVASA-SHDSSVKLW 783 (784)
Q Consensus 764 fspdg~~LaSg-s~DG~V~IW 783 (784)
|+||++.|+.. ..+|...||
T Consensus 358 FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EEE
T ss_pred cCCCCCEEEEECCCCCCccEE
Confidence 99999966554 457776665
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.22 E-value=0.00018 Score=80.40 Aligned_cols=261 Identities=15% Similarity=0.124 Sum_probs=137.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-----c
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-----F 583 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-----~ 583 (784)
.|+++.|+++...|++|...|.|.||.+...+... ..-...-....+.+-. ..-...+.+-|-+..... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~---~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS---LNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc---ccCCCcceEEehhhCCcccccccC
Confidence 48999999999999999999999999886533322 0001111122221100 000011222222221111 2
Q ss_pred eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----------cCCeeEEEEec-----CC---
Q 047260 584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----------KGGTAQVRFQP-----RI--- 644 (784)
Q Consensus 584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----------~~~v~~v~fsp-----~~--- 644 (784)
....+....++|++++.+.-| +++.|..+|.+.|.|++....+... ...++++.|.. |+
T Consensus 78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 333344557899999998555 8999999999999999976665441 13456666652 22
Q ss_pred CEEEEEECCCcEEEEECCC---CeE----EEEEeCCCCCEEEEE-EcCC---------------------CCEEEEEeCC
Q 047260 645 GQLLAAASDKVVSIFDIET---DRQ----THSLQGHAELVNYIC-WDTN---------------------GDYLASVSQN 695 (784)
Q Consensus 645 ~~Ll~~s~Dg~I~IwDl~t---~~~----i~~l~~h~~~V~sl~-~spd---------------------g~~Lasgsdd 695 (784)
-.+++|+..|.+.+|.+.- +.. ......+.++|..|. ++.+ .-+++++++.
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 3588889999999998741 211 122224566666655 3221 1277888888
Q ss_pred eEEEEeCCCCceEEEeccCCCceEEEEEe-----cCCCEEEEEECCCeEEEEECCCCceEE-ecc----cCCceEEEEEe
Q 047260 696 LVKVWSMASGECIQELSSNGNQFHSCVFH-----PSYSTLLVVGGISSLELWNMAENKSMT-IAA----HENIISALAQS 765 (784)
Q Consensus 696 ~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-----pdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~----h~~~V~slafs 765 (784)
.++|+...+.+..++..........+.+- ..+..|++...+|.|++|.+-.-+.+. ..- ....+...+++
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 99999999888776665332233344452 356678899999999999999877662 222 22335566778
Q ss_pred CCCCEEEEEEC
Q 047260 766 PVTGMVASASH 776 (784)
Q Consensus 766 pdg~~LaSgs~ 776 (784)
++|..++-.+.
T Consensus 316 ~~Gdi~~~~gp 326 (395)
T PF08596_consen 316 RNGDIFYWTGP 326 (395)
T ss_dssp TTS-EEEE-SS
T ss_pred CCCCEEEEeCc
Confidence 88887766544
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.19 E-value=0.00029 Score=81.16 Aligned_cols=179 Identities=8% Similarity=-0.041 Sum_probs=115.8
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC----CCcEEEEECCCCeEEEEEeCC
Q 047260 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDRQTHSLQGH 673 (784)
Q Consensus 600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~i~~l~~h 673 (784)
+.|++..+.......+.+.+.|..+.+...... +....+.++++++++++.+. ..++...+......+..+...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 344555444444445677777887765554433 44456789999999988873 234444444333322222111
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC----C-ceEEEeccCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCC
Q 047260 674 AELVNYICWDTNGDYLASVSQNLVKVWSMAS----G-ECIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAEN 747 (784)
Q Consensus 674 ~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t----~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~ 747 (784)
. + ..+.++|++... .++.|.+.|.++ + +.+..+. -......|.++|||+++++++. +.+|.|+|+.+.
T Consensus 280 ~--i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 280 R--I--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred H--H--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 0 0 133457887766 456899999998 3 4555554 3456689999999999888776 679999999885
Q ss_pred ce------------EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 748 KS------------MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 748 ~~------------~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+. ..-..-.......+|.++|+.+.|.--|..|..||
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 53 11111223345678999998888888899999996
No 334
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.17 E-value=3.6e-06 Score=61.20 Aligned_cols=38 Identities=29% Similarity=0.589 Sum_probs=36.1
Q ss_pred ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 540 ~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
+++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=3.2e-05 Score=88.73 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 510 VTCCHFSSDGKLLASSG----HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs----~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
-+-+.|+|...+||+++ ..|.|.||- ++|++-... ...-.+++++|+|..-.|+.|-.-|.+.+|...+.+ ..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-TH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCce-ee
Confidence 34467999999998876 357888884 445543332 122346779999998889999889999999988755 55
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~ 623 (784)
.....|+.+|..+.|+++|. .+++++.-|.|.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 56668999999999999998 78899999999999876
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0027 Score=71.17 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=168.3
Q ss_pred EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260 531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609 (784)
Q Consensus 531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~ 609 (784)
+.+++..+......+..+. ....+...+++..++... ....+.+.+.. ..........-......+++++.+...++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5566655555544443333 556677888775554443 22245555555 22122111111134567888999988888
Q ss_pred EEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 047260 610 FCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETDRQTHSLQGHAELVNYICWDT 684 (784)
Q Consensus 610 sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp 684 (784)
....++.|.+.|....++..... .....++++++++.++++.. ++.+.+.|..+.+.+........+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 88888999999988766665554 35677899999998888877 689999999999888886544445 8899999
Q ss_pred CCCEEEEEe--CCeEEEEeCCCCceEE-E---eccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEeccc
Q 047260 685 NGDYLASVS--QNLVKVWSMASGECIQ-E---LSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAH 755 (784)
Q Consensus 685 dg~~Lasgs--dd~I~IwDl~t~~~i~-~---l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h 755 (784)
+|..++.+. ++.|.+.|........ . .......-..+.+.|++.++++.... +.+...|..++........
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999877776 5599999977665553 1 11122334778999999977766655 4899999998887754211
Q ss_pred -CC-ceEEEEEeCCCCEEEEEECC-CcEEE
Q 047260 756 -EN-IISALAQSPVTGMVASASHD-SSVKL 782 (784)
Q Consensus 756 -~~-~V~slafspdg~~LaSgs~D-G~V~I 782 (784)
.. ....+.++|++..+.+.... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 11 46678899999988877443 44544
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00027 Score=79.70 Aligned_cols=185 Identities=16% Similarity=0.240 Sum_probs=119.9
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CC--cEE
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDND---NEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DK--VVS 657 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---g~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg--~I~ 657 (784)
..+......+..-+|+|++..+....-.. ..+.++|+++....... .+....-.|+|+|+.|+.+.. || .|+
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 33344455677788999988766654333 35899999876554444 455666789999999887766 54 577
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260 658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
++|+..+...+ +....+.-..-.|+|||++|+-.++. .|.++|...+.. ..+......-..-.|+|+|++|+..
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence 77888776333 44333333467899999999988854 788888877655 3333332332377899999999888
Q ss_pred ECC-C--eEEEEECCCCceEEecccCCceEEEEEeCCCCEEE
Q 047260 734 GGI-S--SLELWNMAENKSMTIAAHENIISALAQSPVTGMVA 772 (784)
Q Consensus 734 s~d-g--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~La 772 (784)
+.. | .|.+.|+.++.......+......-+|.++++.|+
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence 854 3 37777777666443333333333444555555443
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=0.0016 Score=66.34 Aligned_cols=142 Identities=10% Similarity=-0.005 Sum_probs=95.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl 598 (784)
..+++.|+..+.+.-.|..+++.+..-. -...|.+-+.- -|++++.|++.|.+.+.+.+++..+........-.+. .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence 3478889999999999999998876542 23334333322 4778999999999999999998644333222111222 2
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe---eEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT---AQVRFQPRIGQLLAAASDKVVSIFDIETD 664 (784)
Q Consensus 599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v---~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~ 664 (784)
...+++. ++..++.|+..+..|.++..++...+.+- ..-++.|-...|+++...|.|.-......
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2344444 88889999999999999998888766322 22346665566777777776665555443
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=5.8e-05 Score=87.71 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=137.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS 597 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s 597 (784)
++..++.|+.-..+..+|+.+.+..+...-....|+-++. +++++++|...|+|.+-|.++.+ ....+..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 3456777888888999999988887776555555666665 67899999999999999999866 78889999999988
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCE
Q 047260 598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELV 677 (784)
Q Consensus 598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V 677 (784)
++.. |+ ++++|+..+. ...-..|..|+|||++..+.+.-+.-+.++
T Consensus 223 fDv~--GN-lLitCG~S~R------------------------------~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 223 FDVQ--GN-LLITCGYSMR------------------------------RYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred eecc--CC-eEEEeecccc------------------------------cccccccchhhhhhhhhhhccCCcccccCc-
Confidence 8775 33 7777763321 111223678899999987766655544444
Q ss_pred EEEEEcCC--CCEEEEEeCCeEEEEeC---CCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260 678 NYICWDTN--GDYLASVSQNLVKVWSM---ASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 678 ~sl~~spd--g~~Lasgsdd~I~IwDl---~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl 744 (784)
.-+.|.|. .+.+++.+.+...+.|. .+. .-+.-+......+..+.+++++..++.+..+|.|.+|.-
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44566663 34445555678888883 332 223344445566899999999999999999999999973
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=8.1e-05 Score=85.51 Aligned_cols=259 Identities=14% Similarity=0.152 Sum_probs=149.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-ceeeec
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-FCSQAY 588 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~ 588 (784)
+++++|+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..++|+..-|.|.+|...--. .....+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 6779999998899999999999999999888777778899999999999999999999999999999876322 111111
Q ss_pred cCCC--CC--eEEEEEcCCCCcE-----EEEEeCCCeEE-EEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260 589 TGHS--SP--IMSLDFHPKKTDL-----FCFCDNDNEIQ-YWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 589 ~~h~--~~--V~sl~~sp~~~~l-----l~sgs~dg~I~-iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
..|. .. ..|...++++..+ +++.+++..+- .++.+........ .-.-.|+|..+++++.+|+|+.
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-----~ksgv~~g~~F~~~~~~GtVyy 216 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-----EKSGVPKGTEFLFAGKSGTVYY 216 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-----cccCCCCCcEEEEEcCCceEEE
Confidence 1121 22 3344445553221 22223333332 4433321111100 0012467788888999999988
Q ss_pred EECCCCeEEEEEe----------CCCCCEEEEEEcCCCCEEEEEeCC------eEEEEeCCCCce------------EE-
Q 047260 659 FDIETDRQTHSLQ----------GHAELVNYICWDTNGDYLASVSQN------LVKVWSMASGEC------------IQ- 709 (784)
Q Consensus 659 wDl~t~~~i~~l~----------~h~~~V~sl~~spdg~~Lasgsdd------~I~IwDl~t~~~------------i~- 709 (784)
.|-. ++.....+ +....|.++.-.-...++.+-..| .+++-- +.|.. +.
T Consensus 217 vdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sg-k~GgrqGgiA~sEssGvLr~ 294 (1416)
T KOG3617|consen 217 VDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSG-KLGGRQGGIACSESSGVLRK 294 (1416)
T ss_pred EcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhcc-ccCCccCccccccccccccC
Confidence 8844 33222222 111222222111111111111111 111100 00100 00
Q ss_pred --Ee-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc--------eEEe---cccCCceEEEEEeCCCCEEEEEE
Q 047260 710 --EL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK--------SMTI---AAHENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 710 --~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~--------~~~~---~~h~~~V~slafspdg~~LaSgs 775 (784)
++ ...+..+.|++++..+..++.+...|.+.+|--.... ...+ ....+.|+.+.|.|-...+++-+
T Consensus 295 ~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 295 SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 00 0124568999999999999999999999999533221 1122 23456799999998665544433
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.0077 Score=68.19 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=69.6
Q ss_pred eEEEEeCCCCce--EEEe-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEE
Q 047260 696 LVKVWSMASGEC--IQEL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVA 772 (784)
Q Consensus 696 ~I~IwDl~t~~~--i~~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~La 772 (784)
...+|++...+. +... -.....|.+++++|+...++.|+.||+|.+||...+.... ..+.-.++.++|+|+|.+|+
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEE
Confidence 356677655432 2111 1456789999999999999999999999999998775443 34556789999999999999
Q ss_pred EEECCCcEEEeC
Q 047260 773 SASHDSSVKLWK 784 (784)
Q Consensus 773 Sgs~DG~V~IWd 784 (784)
+|+.-|.+.+||
T Consensus 316 V~s~qGelQ~FD 327 (545)
T PF11768_consen 316 VGSEQGELQCFD 327 (545)
T ss_pred EEcCCceEEEEE
Confidence 999999999998
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.00 E-value=2.9e-06 Score=94.90 Aligned_cols=196 Identities=11% Similarity=0.171 Sum_probs=128.4
Q ss_pred CCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCce--eeecCCCCCCeEEEEEcc-CCCEEEEEeC----CCeEEEEc
Q 047260 507 NSKVTCCHFSSD--GKLLASSGHDRKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRP-NSSQLATASV----DKSVRLWD 577 (784)
Q Consensus 507 ~~~V~~l~fspd--g~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~It~i~fsp-dg~~Latgs~----Dg~I~IWd 577 (784)
...+.|+++.-+ ..++++|..+|.|.+-.+..... .....+|...+++++|++ |.+.||.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 445778877653 34789999999999988764322 234457888999999999 6677777632 56799999
Q ss_pred CCCCc----ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-C-eeEEeecCCeeEEEEecCCCEEEEEE
Q 047260 578 AANPN----FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-F-LCTHITKGGTAQVRFQPRIGQLLAAA 651 (784)
Q Consensus 578 l~~~~----~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~-~~~~~~~~~v~~v~fsp~~~~Ll~~s 651 (784)
+.+.- .......+......+++|..+.+ ++.+|.....+.++|++. . .+...-...+..+.+.|-....++..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 98751 11111112334566888985544 788888888999999983 2 22222223556677788544456666
Q ss_pred CCCcEEEEE-CCCC-eEEEEEeCC----CCCEEEEEEcCCCC-EEEEEeCC--eEEEEeCC
Q 047260 652 SDKVVSIFD-IETD-RQTHSLQGH----AELVNYICWDTNGD-YLASVSQN--LVKVWSMA 703 (784)
Q Consensus 652 ~Dg~I~IwD-l~t~-~~i~~l~~h----~~~V~sl~~spdg~-~Lasgsdd--~I~IwDl~ 703 (784)
.||.|.+|| .++- .++..+... ...+..++|+|... .+++...+ +|++||+.
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 699999999 3332 222222211 22489999999543 45555544 99999985
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.97 E-value=0.00076 Score=76.44 Aligned_cols=225 Identities=8% Similarity=0.099 Sum_probs=123.5
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE-cCC
Q 047260 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW-DAA 579 (784)
Q Consensus 501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW-dl~ 579 (784)
+.+....-....+.++|+|+++++ +.||...|+.....+.... +.....+|.+++ .+|+-...++|.|+ +++
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence 333445556889999999999988 5588888888554444322 345678899855 46666668899996 443
Q ss_pred CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC-eeEEEEecCCCEEEEEECCCcEEE
Q 047260 580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG-TAQVRFQPRIGQLLAAASDKVVSI 658 (784)
Q Consensus 580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~-v~~v~fsp~~~~Ll~~s~Dg~I~I 658 (784)
... ...+.. ...+..|.. |. +|+..+ ++.|.+||+.+.+.+...... +..+.|++++.+++..+. ..+.|
T Consensus 99 ~~~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~i 169 (443)
T PF04053_consen 99 NEV--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYI 169 (443)
T ss_dssp E-T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred ccc--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEE
Confidence 322 111211 123444433 55 444444 448999999999999988866 699999999998888875 46777
Q ss_pred EECCCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCC
Q 047260 659 FDIETD-----------RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727 (784)
Q Consensus 659 wDl~t~-----------~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg 727 (784)
++.... .....+......|.+.+|..+ -++.+. .+.|+- +..|+. .++..-..++.-+.+.+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SNHLKY--LVNGET-GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TTEEEE--EETTEE-EEEEE-SS--EEEEEETTT
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CCeEEE--EEcCCc-ceEEEcCCceEEEEEEccC
Confidence 664432 122333323578899999877 444443 336666 334432 2222334567778888877
Q ss_pred CEEEEEECCCeEEEEECCC
Q 047260 728 STLLVVGGISSLELWNMAE 746 (784)
Q Consensus 728 ~~L~s~s~dg~I~Iwdl~~ 746 (784)
+.++....|+.|..+.+..
T Consensus 245 ~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TEEEEE-TT--EEEEE--H
T ss_pred CEEEEEECCCCEEEEEECH
Confidence 8888888888888887653
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.96 E-value=0.0046 Score=66.56 Aligned_cols=254 Identities=9% Similarity=0.107 Sum_probs=154.5
Q ss_pred CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC----------CCeEEEEcCCCCcceeeeccCCC------
Q 047260 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV----------DKSVRLWDAANPNFCSQAYTGHS------ 592 (784)
Q Consensus 529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~----------Dg~I~IWdl~~~~~~~~~~~~h~------ 592 (784)
+.|+|+|.++++.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999888777642 23344678999999887532 33689999998653222211111
Q ss_pred CCeEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEE
Q 047260 593 SPIMSLDFHPKKTDLFCFC-DNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSL 670 (784)
Q Consensus 593 ~~V~sl~~sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l 670 (784)
.....+.++.+++++++.- +-...|.|.|+...+.+....-+-+...+-.....+.+.|.||.+..+.+. .|+.....
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 1223356677777555442 234567778888877777776555555553334678899999999999987 45443222
Q ss_pred ----eCCCCCE-EEEEEcC-CCCEEEEEeCCeEEEEeCCCCce--EEEeccC----------CCceEEEEEecCCCEEEE
Q 047260 671 ----QGHAELV-NYICWDT-NGDYLASVSQNLVKVWSMASGEC--IQELSSN----------GNQFHSCVFHPSYSTLLV 732 (784)
Q Consensus 671 ----~~h~~~V-~sl~~sp-dg~~Lasgsdd~I~IwDl~t~~~--i~~l~~~----------~~~I~sl~fspdg~~L~s 732 (784)
.....++ ..-.+.. ++.+++..-+|.|+-.|+..... ...+... .+...-+++++....|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1122222 2333443 34566666677888888876542 2222211 122345778876666655
Q ss_pred EEC--------CC--eEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 047260 733 VGG--------IS--SLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSSVKLWK 784 (784)
Q Consensus 733 ~s~--------dg--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~V~IWd 784 (784)
.-. |+ .|-+||+.+++.+.-..-...+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 422 11 47788999999885555456688999998876 666554 578899986
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00085 Score=75.77 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=129.0
Q ss_pred EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---C-CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260 531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---D-KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD 606 (784)
Q Consensus 531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---D-g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 606 (784)
+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..+.++|++++......- ..+.-....|+|++..
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCE
Confidence 4444444 4555555555667788899999887665532 2 358999998866322211 2333456789999999
Q ss_pred EEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CC--cEEEEECCCCeEEEEEeCCCCCEEE
Q 047260 607 LFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DK--VVSIFDIETDRQTHSLQGHAELVNY 679 (784)
Q Consensus 607 ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg--~I~IwDl~t~~~i~~l~~h~~~V~s 679 (784)
++++...||. |+++|+.......... +..+.-.|+|+|+.++..+. .| .|.++|++..... .+......-..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcC
Confidence 9998888886 5555776655333222 23345579999999888876 34 4677777766543 33322222237
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260 680 ICWDTNGDYLASVS--QN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737 (784)
Q Consensus 680 l~~spdg~~Lasgs--dd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg 737 (784)
-.|+|||++|+..+ ++ .|.+.|+.++..+..+. .......-.|.+++..++..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 78999999999877 44 58888887776544332 223334557788888777666543
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.90 E-value=0.014 Score=64.05 Aligned_cols=267 Identities=12% Similarity=0.166 Sum_probs=135.2
Q ss_pred cccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCC-ceEEEEEcCCCCEEEE
Q 047260 446 LLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNS-KVTCCHFSSDGKLLAS 524 (784)
Q Consensus 446 ~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~-~V~~l~fspdg~~Las 524 (784)
+..+..+|+.++..|+.-.+|...-.. .++.-|..+.+ ......++++.+.|+.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t-------------------------~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLAT-------------------------GEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT--------------------------EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred cCCCCCEEEEEeccCCCcceEEEEccc-------------------------CEEEECccCCCCCccceEEecCCCeEEE
Confidence 456788888888888887777663221 12222332221 1224566788888776
Q ss_pred EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc--CCCEEEEEeC----------------------CCeEEEEcCCC
Q 047260 525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP--NSSQLATASV----------------------DKSVRLWDAAN 580 (784)
Q Consensus 525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~----------------------Dg~I~IWdl~~ 580 (784)
...+..|+-.|+.+.+....+......+-...|.. ++..++-.-. .+.|.-.|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 66667899999999887777666666665566643 5555443211 12344456665
Q ss_pred CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeC--CCCeeEEeec----CCeeEEEEecCCCEEEEE
Q 047260 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND---N-EIQYWSI--NPFLCTHITK----GGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---g-~I~iwDl--~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~ 650 (784)
++ ...+......+..+.|+|..+.+|+.|-+. . .-+||-+ +........+ ..+..=-|.++|..|+.-
T Consensus 178 G~--~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 178 GE--RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp ----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred Cc--eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 54 222333456678899999999899888642 2 1255544 4332222222 122333489999887664
Q ss_pred EC-----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----------------eEEEEeCCCCceE
Q 047260 651 AS-----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-----------------LVKVWSMASGECI 708 (784)
Q Consensus 651 s~-----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-----------------~I~IwDl~t~~~i 708 (784)
+. +..|.-+|+.+++....... .....+-.++||++++.-+.+ .|+++++..+...
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred eecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 43 34677788888765433221 234455667899988763321 4667788766532
Q ss_pred EEeccCC---------Cc--eEEEEEecCCCEEEEEEC-CCeEEEE
Q 047260 709 QELSSNG---------NQ--FHSCVFHPSYSTLLVVGG-ISSLELW 742 (784)
Q Consensus 709 ~~l~~~~---------~~--I~sl~fspdg~~L~s~s~-dg~I~Iw 742 (784)
. +..|. .. =....|+||+++++..+. .|...||
T Consensus 334 ~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 334 K-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred e-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 1 11111 11 245789999999776665 4654444
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.89 E-value=0.0085 Score=64.55 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=143.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCC---C----CCeEEEEEccCCCEEEEEeC--CCe
Q 047260 512 CCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDH---K----SVVTDVRFRPNSSQLATASV--DKS 572 (784)
Q Consensus 512 ~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h---~----~~It~i~fspdg~~Latgs~--Dg~ 572 (784)
.+.++||++.++++. ..-.|.+||..+......+.-- . .....+.++.|++++++... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366789999888753 3446999999998777654311 1 12244678888888877644 457
Q ss_pred EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEee----cC---C-eeEEEEecC
Q 047260 573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCTHIT----KG---G-TAQVRFQPR 643 (784)
Q Consensus 573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~~~~----~~---~-v~~v~fsp~ 643 (784)
|.|-|+...+. ...+.- . -|....|.++.-|.+-+.||.+....+. .++..... .. + ...-.+...
T Consensus 120 VtVVDl~~~kv-v~ei~~-P---GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDT-P---GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEG-T---SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecC-C---CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88999988663 333321 1 1223334444456666779998888887 33333221 11 1 112234455
Q ss_pred CCEEEEEECCCcEEEEECCCCeE--EEEEeCC----------CCCEEEEEEcCCCCEEEEEe---------CC--eEEEE
Q 047260 644 IGQLLAAASDKVVSIFDIETDRQ--THSLQGH----------AELVNYICWDTNGDYLASVS---------QN--LVKVW 700 (784)
Q Consensus 644 ~~~Ll~~s~Dg~I~IwDl~t~~~--i~~l~~h----------~~~V~sl~~spdg~~Lasgs---------dd--~I~Iw 700 (784)
+..++-.+.+|.|+-.|+..... ...+..- .+...-+++++....|++.- +. .|-++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 66777788899999999876542 2222210 11223366776554444321 11 78999
Q ss_pred eCCCCceEEEeccCCCceEEEEEecCCC-EEEEEE-CCCeEEEEECCCCceEEec
Q 047260 701 SMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVG-GISSLELWNMAENKSMTIA 753 (784)
Q Consensus 701 Dl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s-~dg~I~Iwdl~~~~~~~~~ 753 (784)
|+.+++.+..+... .++.++.++.+.+ +|++.+ .++.|.+||..+++.+...
T Consensus 275 D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 99999999998753 4577999998775 555554 4689999999999887443
No 348
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.88 E-value=0.0043 Score=68.77 Aligned_cols=227 Identities=18% Similarity=0.209 Sum_probs=129.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCC-----------------CCCeEEEEEccCCCEEEEEeC
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDH-----------------KSVVTDVRFRPNSSQLATASV 569 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-----------------~~~It~i~fspdg~~Latgs~ 569 (784)
...+....|||+|+.||... ++.|.+++..++.....-..- -+.-..+-|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999998875 678999998776443322111 122356889999999988643
Q ss_pred CC------------------------------------eEEEEcCCCCccee-eec---cCCCCCeEEEEEcCCCCcEE-
Q 047260 570 DK------------------------------------SVRLWDAANPNFCS-QAY---TGHSSPIMSLDFHPKKTDLF- 608 (784)
Q Consensus 570 Dg------------------------------------~I~IWdl~~~~~~~-~~~---~~h~~~V~sl~~sp~~~~ll- 608 (784)
|. .+.|+|+.+++... ... ..-...+..+.|.+++..++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 31 13334444433211 101 12344577888988877333
Q ss_pred EEEeCCC---eEEEEeCCCCeeEEeec-------CCeeEEEEe-cCCCEEEEEE-CCC--cEEEEECCCCeEEEEEeCCC
Q 047260 609 CFCDNDN---EIQYWSINPFLCTHITK-------GGTAQVRFQ-PRIGQLLAAA-SDK--VVSIFDIETDRQTHSLQGHA 674 (784)
Q Consensus 609 ~sgs~dg---~I~iwDl~~~~~~~~~~-------~~v~~v~fs-p~~~~Ll~~s-~Dg--~I~IwDl~t~~~i~~l~~h~ 674 (784)
.....+. .+.++|..++.+...+. .....+.+. +++..++..+ .+| .|.+++...+.. ..+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCc
Confidence 3344332 45666776544332222 122355554 6666655444 455 466667666653 3555455
Q ss_pred CCEEE-EEEcCCCCEEEE-EeC-C----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260 675 ELVNY-ICWDTNGDYLAS-VSQ-N----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 675 ~~V~s-l~~spdg~~Las-gsd-d----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~ 735 (784)
-.|.. +.|+++++.|+. +.. + .|...++..+..+..+......-..+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56644 678888776554 432 1 6777777734455566554444369999999998765543
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.88 E-value=0.0099 Score=69.37 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=112.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeE---E-------EEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVT---D-------VRFRPNSSQLATASVDKSVRLWDAANPNFCSQA 587 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It---~-------i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~ 587 (784)
+..|++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..++.++.|+.|...|.++++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999887764321 1111 1 122 2346778888999999999998854332
Q ss_pred ccC-CC--CCeEE-EEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEeecCC------------------------
Q 047260 588 YTG-HS--SPIMS-LDFHPKKTDLFCFCD-----NDNEIQYWSINPFLCTHITKGG------------------------ 634 (784)
Q Consensus 588 ~~~-h~--~~V~s-l~~sp~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~~~------------------------ 634 (784)
-.. +. ..+.+ ..+. ++ .+++..+ .+|.|..+|.++++.+-.+...
T Consensus 147 ~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 221 11 01111 1111 22 2333222 2688999999887766443310
Q ss_pred ----------e-eEEEEecCCCEEEEEECC-----C-----------cEEEEECCCCeEEEEEeCCCCCE---------E
Q 047260 635 ----------T-AQVRFQPRIGQLLAAASD-----K-----------VVSIFDIETDRQTHSLQGHAELV---------N 678 (784)
Q Consensus 635 ----------v-~~v~fsp~~~~Ll~~s~D-----g-----------~I~IwDl~t~~~i~~l~~h~~~V---------~ 678 (784)
+ ..+++.+..+.++.+... + .|.-.|+++++....+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0 123667777777776622 2 68888999999888776422211 1
Q ss_pred EEEEcCCCC---EEEEEeC-CeEEEEeCCCCceE
Q 047260 679 YICWDTNGD---YLASVSQ-NLVKVWSMASGECI 708 (784)
Q Consensus 679 sl~~spdg~---~Lasgsd-d~I~IwDl~t~~~i 708 (784)
-+.+..+|+ .++.+.. +.+.+.|.++|+.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 122334666 5556654 49999999999886
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.86 E-value=0.012 Score=61.58 Aligned_cols=198 Identities=14% Similarity=0.190 Sum_probs=114.8
Q ss_pred EeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCC-CCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 500 VGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDH-KSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 500 i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
...+.+-...|..|+|+|+.+ ++++....+.|..++.+ ++.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345666667799999999755 66777788889888875 7777776533 35678899988887777665689999998
Q ss_pred CCCCcce--e---e-----eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEE----------eecC
Q 047260 578 AANPNFC--S---Q-----AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTH----------ITKG 633 (784)
Q Consensus 578 l~~~~~~--~---~-----~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~----------~~~~ 633 (784)
+...... . . ....+...+-.++|.+.+..++++.. ..-..+|.++. ..... ....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 0 1 11134556899999999887777654 43344444432 11110 1124
Q ss_pred CeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 047260 634 GTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHA---------ELVNYICWDTNGDYLASVSQNLVKVW 700 (784)
Q Consensus 634 ~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~---------~~V~sl~~spdg~~Lasgsdd~I~Iw 700 (784)
.+..+.++|..+.|++-+. +..|.++| ..++.+..+.-.. ...-.|+|+++|++.++..-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5678899999888777766 68888899 6677666554222 24678999999988877765555544
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0052 Score=68.87 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=154.0
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcce
Q 047260 509 KVTCCHFSSDGKL-LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNFC 584 (784)
Q Consensus 509 ~V~~l~fspdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~~ 584 (784)
.-.+++++++++. +++...+..|.+.|..+.+.......-. ....++++++++.++.+.. ++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 3457788888884 4455556889999988777666553222 6678999999988877765 688889998887755
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-------eecCCeeEEEEecCCCEEEEEECC---C
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-------ITKGGTAQVRFQPRIGQLLAAASD---K 654 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-------~~~~~v~~v~fsp~~~~Ll~~s~D---g 654 (784)
.....+. .+ ..+++.|++..++++-..++.|.+.|........ ........+.+.+++.++++.... +
T Consensus 154 ~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 154 ATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 4433332 33 8999999999888877789999999988766653 112344678899999988777764 5
Q ss_pred cEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCC---ceEEEEEecC
Q 047260 655 VVSIFDIETDRQTHSLQGHAE-LVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGN---QFHSCVFHPS 726 (784)
Q Consensus 655 ~I~IwDl~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~---~I~sl~fspd 726 (784)
.+.+.|..++........-.. ....+..+|+|.++.+... +.+.+.|..+......+..... .+..+++.+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 999999998877665221111 4566889999999888753 4999999998877776654322 3455555544
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.014 Score=62.00 Aligned_cols=221 Identities=13% Similarity=0.158 Sum_probs=127.1
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee--------
Q 047260 517 SDGKLLASSGHDRKVVLWNMD-TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA-------- 587 (784)
Q Consensus 517 pdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~-------- 587 (784)
..++.|+.|+.+| |.+++.. ........ +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999999 9999993 33333332 333499999999877777665 599999998764322210
Q ss_pred -----ccCCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEe--ecCCeeEEEEecCCCEEEEEECC
Q 047260 588 -----YTGHSSPIMSLD--FHPKKTDLFCFCDNDNEIQYWSINPF-----LCTHI--TKGGTAQVRFQPRIGQLLAAASD 653 (784)
Q Consensus 588 -----~~~h~~~V~sl~--~sp~~~~ll~sgs~dg~I~iwDl~~~-----~~~~~--~~~~v~~v~fsp~~~~Ll~~s~D 653 (784)
.......+..++ -...+...++++. ...|.+|.+... ..... ....+..+.|. ++.++++..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~- 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS- 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-
Confidence 112223344444 1223333444333 458888776542 23333 33677888888 456666664
Q ss_pred CcEEEEECCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE--EeccCCCceE
Q 047260 654 KVVSIFDIETDRQTHSLQGH------------AELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ--ELSSNGNQFH 719 (784)
Q Consensus 654 g~I~IwDl~t~~~i~~l~~h------------~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~--~l~~~~~~I~ 719 (784)
+...+.|+.++.....+... ..++..+.. +++++|++ .++.-.+.|. .|+..+ .+.-. ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~-~G~~~r~~~i~W~-~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNK-NGEPSRKSTIQWS-SAPQ 232 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcC-CCCcCcccEEEcC-Cchh
Confidence 55888999876554333211 123333333 34566654 3443333443 343332 23222 2445
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCceEEe
Q 047260 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTI 752 (784)
Q Consensus 720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~ 752 (784)
.+++. .++|++.+.+ .|.||++.+++.+..
T Consensus 233 ~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSN-SIEVRSLETGELVQT 262 (275)
T ss_pred EEEEE--CCEEEEECCC-EEEEEECcCCcEEEE
Confidence 56663 3477776664 599999999987633
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.02 Score=64.69 Aligned_cols=203 Identities=13% Similarity=0.092 Sum_probs=108.6
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-----eeeeccCCCCCeEEEEEcCCC
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-----CSQAYTGHSSPIMSLDFHPKK 604 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-----~~~~~~~h~~~V~sl~~sp~~ 604 (784)
.|.||+.. |+.+..+.--.+.|.++.|+.+. .|++...||.+++||+..... ......-....+..+.+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 48999876 56666654344899999998754 566777999999999863220 000001111222222333233
Q ss_pred CcEEEEEeCCCeEEEE-eCCCCeeEEee---cCCee---------E-EEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 605 TDLFCFCDNDNEIQYW-SINPFLCTHIT---KGGTA---------Q-VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 605 ~~ll~sgs~dg~I~iw-Dl~~~~~~~~~---~~~v~---------~-v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
+++.. .++.+.+. +.......... ..... . ..+..+....+....++.|.+.+-...+. +
T Consensus 140 --ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 33332 23444333 22211111110 00000 0 12333444444444555555444322111 1
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC-CCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260 671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN-GNQFHSCVFHPSYSTLLVVGGISSLELWN 743 (784)
Q Consensus 671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg~I~Iwd 743 (784)
. ..+++..+++||++++||.-.++ .+.|.+..-.+.+.++... ......+.|+.++..++.- ...|.++.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1 34689999999999999988864 8888887666677666554 3456777887765433222 33455544
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.81 E-value=9.9e-05 Score=83.02 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=65.6
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260 505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~ 582 (784)
.....|.|++++|+.+.|+.|+.||.|.+||...+.... ..+.-..+.++|+|+|.+|++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 478899999999999999999999999999998654332 2455668999999999999999999999999987644
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.80 E-value=0.0071 Score=64.29 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=123.3
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE----------
Q 047260 560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH---------- 629 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~---------- 629 (784)
.++.|+.|+.+| |.++++.......... +...|..+...++-+.+++.+ |+.++++++.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence 577899999988 8999984333233322 233499999999877666554 5999999987533322
Q ss_pred -----eec--CCeeEEE--EecCCCEEEEEECCCcEEEEECCCC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260 630 -----ITK--GGTAQVR--FQPRIGQLLAAASDKVVSIFDIETD-----RQTHSLQGHAELVNYICWDTNGDYLASVSQN 695 (784)
Q Consensus 630 -----~~~--~~v~~v~--fsp~~~~Ll~~s~Dg~I~IwDl~t~-----~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd 695 (784)
... .++..++ -...+...+++.....|.+|..... +..+.+. -...+.+++|. +..|+.+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111 2233333 1234455666666679998887653 3445554 45778889998 6678888788
Q ss_pred eEEEEeCCCCceEEEeccCC-----------CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEE
Q 047260 696 LVKVWSMASGECIQELSSNG-----------NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALA 763 (784)
Q Consensus 696 ~I~IwDl~t~~~i~~l~~~~-----------~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla 763 (784)
...+.|+.++.....+.... .....+.--+++.+|++. +..-.+.|....... ....-...+.+++
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~ 235 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVA 235 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEE
Confidence 89999999776544332111 112223333445555543 223333344332221 1122233555666
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 047260 764 QSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 764 fspdg~~LaSgs~DG~V~IWd 784 (784)
+. ..+|+..+.+ .|-||+
T Consensus 236 ~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 236 YS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred EE--CCEEEEECCC-EEEEEE
Confidence 64 4577766554 487774
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.80 E-value=1.1e-05 Score=90.29 Aligned_cols=195 Identities=22% Similarity=0.320 Sum_probs=135.2
Q ss_pred CCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCCcce-eeeccCCCCCeEEEEEcCCCCcEEEEEe----CCCeEEEEeC
Q 047260 550 SVVTDVRFRPN--SSQLATASVDKSVRLWDAANPNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCD----NDNEIQYWSI 622 (784)
Q Consensus 550 ~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs----~dg~I~iwDl 622 (784)
..+.|+++.-+ ..++++|..+|.|.+-.++..... .....++...+++++|++-+...+++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 45667776653 347888999999999988765433 4455678889999999997766777763 4678999999
Q ss_pred CCCeeE--------EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEE
Q 047260 623 NPFLCT--------HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-QTHSLQGHAELVNYICWDT-NGDYLASV 692 (784)
Q Consensus 623 ~~~~~~--------~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-~i~~l~~h~~~V~sl~~sp-dg~~Lasg 692 (784)
.+.... ........+++|..+.+.+++|.....|.++|++... ....+ ....+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 864211 1122455678888888888888889999999998431 11111 234566778888 88899999
Q ss_pred eCCeEEEEe-CCCC-ceEEEeccCC----CceEEEEEecCCCE-EEEEECC-CeEEEEECCC
Q 047260 693 SQNLVKVWS-MASG-ECIQELSSNG----NQFHSCVFHPSYST-LLVVGGI-SSLELWNMAE 746 (784)
Q Consensus 693 sdd~I~IwD-l~t~-~~i~~l~~~~----~~I~sl~fspdg~~-L~s~s~d-g~I~Iwdl~~ 746 (784)
.++.|.+|| .++- .++..+.... ..+..++|+|...- +++...| ++|+++|+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999999999 3332 2233332222 24889999997643 5555555 6899998753
No 357
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.76 E-value=0.05 Score=64.84 Aligned_cols=307 Identities=12% Similarity=0.040 Sum_probs=174.1
Q ss_pred CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260 450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR 529 (784)
Q Consensus 450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg 529 (784)
..+++++|.|+..+.+.....+...-.. +......-...|.-..|-.|..+|.++..||
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~---------------------~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG 605 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITH---------------------EQLSGEIIPRSILLTTFEGDIHYLLVALGDG 605 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeee---------------------eccCCCccchheeeEEeeccceEEEEEcCCc
Confidence 3448899999998887766544311110 0000111223466666666788999999999
Q ss_pred eEEEEEC--CCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCC----------------------------------
Q 047260 530 KVVLWNM--DTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDK---------------------------------- 571 (784)
Q Consensus 530 ~I~IWd~--~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg---------------------------------- 571 (784)
.+.-|.+ .++..-..- .-...++.--.|+..++.-+.+..|+
T Consensus 606 ~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 606 ALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPD 685 (1096)
T ss_pred eEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCc
Confidence 9876654 343221111 11223333334433322222222222
Q ss_pred --------eEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--------------CeEEEEeCCCCeeE
Q 047260 572 --------SVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--------------NEIQYWSINPFLCT 628 (784)
Q Consensus 572 --------~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--------------g~I~iwDl~~~~~~ 628 (784)
.+++.-++.-. ...++ ..-......+++.+... ++.+.+.. ..++++|-++.+.+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceee-ecCCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 23333222211 01111 12234456677776433 33333211 25788888888887
Q ss_pred EeecC-------CeeEEEEecC-CCEEEEEEC----------CCcEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCE
Q 047260 629 HITKG-------GTAQVRFQPR-IGQLLAAAS----------DKVVSIFDIETDRQTHSLQG--HAELVNYICWDTNGDY 688 (784)
Q Consensus 629 ~~~~~-------~v~~v~fsp~-~~~Ll~~s~----------Dg~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spdg~~ 688 (784)
..++- .+.++.|..+ +.++++|+. .|.|.+|.......+..... -.+.+.+++. -+|++
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkl 842 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKL 842 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeE
Confidence 77662 2344457777 566777653 47788888877433333322 2334444432 25666
Q ss_pred EEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE--ECCCCceEE--ecccCCceEEEEE
Q 047260 689 LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW--NMAENKSMT--IAAHENIISALAQ 764 (784)
Q Consensus 689 Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw--dl~~~~~~~--~~~h~~~V~slaf 764 (784)
||+ -.-.|++|++.+++.++.-..+...+..+...-.+..|++|.--++|.+. +-..+.... -..+...++++.+
T Consensus 843 lA~-In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei 921 (1096)
T KOG1897|consen 843 LAG-INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI 921 (1096)
T ss_pred EEe-cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence 554 34589999999998877777788889999999999999999988876654 444444443 3357778888887
Q ss_pred eCCCCEEEEEECCCcEEE
Q 047260 765 SPVTGMVASASHDSSVKL 782 (784)
Q Consensus 765 spdg~~LaSgs~DG~V~I 782 (784)
-.+..++. +..+|.+.+
T Consensus 922 l~~d~ylg-ae~~gNlf~ 938 (1096)
T KOG1897|consen 922 LDDDTYLG-AENSGNLFT 938 (1096)
T ss_pred ecCceEEe-ecccccEEE
Confidence 76554443 445666554
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.052 Score=63.40 Aligned_cols=231 Identities=9% Similarity=0.062 Sum_probs=131.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCC--C--CCeEEEEEccCCCEEEEEe------CCCeEEEEcCCCCcceeeec
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDH--K--SVVTDVRFRPNSSQLATAS------VDKSVRLWDAANPNFCSQAY 588 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~--~~It~i~fspdg~~Latgs------~Dg~I~IWdl~~~~~~~~~~ 588 (784)
+..++.++.|+.|...|.++++.+...... . ..+++--..-++ .|+++. .+|.|..+|.++++..-...
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 345677888999999999999998776421 1 112211111144 455543 26889999998877432211
Q ss_pred cCCC------------------------------CCeE-EEEEcCCCCcEEEEEeC----CC-----------eEEEEeC
Q 047260 589 TGHS------------------------------SPIM-SLDFHPKKTDLFCFCDN----DN-----------EIQYWSI 622 (784)
Q Consensus 589 ~~h~------------------------------~~V~-sl~~sp~~~~ll~sgs~----dg-----------~I~iwDl 622 (784)
.... ..+. .+.+.++...+++..++ ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1100 0111 23555554433333222 12 5667788
Q ss_pred CCCeeEEeecC------------CeeEEEEecCCC---EEEEEECCCcEEEEECCCCeEEEEEe-----------C-CC-
Q 047260 623 NPFLCTHITKG------------GTAQVRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQ-----------G-HA- 674 (784)
Q Consensus 623 ~~~~~~~~~~~------------~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~-----------~-h~- 674 (784)
++++..-.+.. ...-+.+..+++ .++.+..+|.++++|.++++.+...+ . ..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 88777655431 111122334555 56677889999999999998863210 0 00
Q ss_pred CC-----------------E-----------EEEEEcCCCCEEEEEe---------------------------------
Q 047260 675 EL-----------------V-----------NYICWDTNGDYLASVS--------------------------------- 693 (784)
Q Consensus 675 ~~-----------------V-----------~sl~~spdg~~Lasgs--------------------------------- 693 (784)
.+ + ..++++|+..+++...
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 00 0 1144555544443321
Q ss_pred -CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260 694 -QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT 751 (784)
Q Consensus 694 -dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~ 751 (784)
.+.|.-+|+.+++.+............. +.-.+..+++++.+|.++.+|.++++.+-
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 1257788888888877765432222222 22244567777889999999999999883
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.011 Score=61.91 Aligned_cols=194 Identities=14% Similarity=0.189 Sum_probs=110.0
Q ss_pred eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260 587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIE 662 (784)
Q Consensus 587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~ 662 (784)
.+.+-...+..|+|+|+...++++.+..+.|..++.+ ++.+..+. +....|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999988899999999999999986 45554443 456778887666555544448999999884
Q ss_pred CC------eEEEEEe-----CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC---CceEEEe--------ccCCCceE
Q 047260 663 TD------RQTHSLQ-----GHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS---GECIQEL--------SSNGNQFH 719 (784)
Q Consensus 663 t~------~~i~~l~-----~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t---~~~i~~l--------~~~~~~I~ 719 (784)
.. .....+. .++..+-.++|++.+..|+++.+. -..||.+.. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1112222 244568999999987766666654 455555443 2111111 12334578
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEECCCCceE---Eecc--c-----CCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 720 SCVFHPSYSTLLVVGG-ISSLELWNMAENKSM---TIAA--H-----ENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 720 sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~~~---~~~~--h-----~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.+.++|....|++-+. +..|.++| .+++.+ .+.. | -.....|+|.++|++.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999998766666555 46888899 455544 2222 1 124789999999865554 455666555
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.0049 Score=68.99 Aligned_cols=204 Identities=14% Similarity=0.138 Sum_probs=117.6
Q ss_pred ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--cCC------CCCCeEEEEEcc-----CC-
Q 047260 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST--PED------HKSVVTDVRFRP-----NS- 561 (784)
Q Consensus 496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~--l~~------h~~~It~i~fsp-----dg- 561 (784)
.|.....++...++|++++.|. =-++|.|..+|.+.|.|++....+.. +.. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 3677777888899999999984 44999999999999999987665544 122 345788999974 32
Q ss_pred --CEEEEEeCCCeEEEEcCCC---Ccc---eeeeccCCCCCeEEEEEc-CCC--------------------CcEEEEEe
Q 047260 562 --SQLATASVDKSVRLWDAAN---PNF---CSQAYTGHSSPIMSLDFH-PKK--------------------TDLFCFCD 612 (784)
Q Consensus 562 --~~Latgs~Dg~I~IWdl~~---~~~---~~~~~~~h~~~V~sl~~s-p~~--------------------~~ll~sgs 612 (784)
-+|++|...|.+.+|.+.- +.. .......+.++|..|..- .+. +.++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 111 111222456677666532 221 22444444
Q ss_pred CCCeEEEEeCCCCeeEEeec-CCee--EEEEe-----cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC----CCEEEE
Q 047260 613 NDNEIQYWSINPFLCTHITK-GGTA--QVRFQ-----PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA----ELVNYI 680 (784)
Q Consensus 613 ~dg~I~iwDl~~~~~~~~~~-~~v~--~v~fs-----p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~----~~V~sl 680 (784)
+..++++..-+.+..+... .+.. .+.+- ..+..|++-..+|.|++|.+..-+.+..+.-.. ..+...
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 7889999988766655443 3222 23342 245567777889999999999988888776432 234456
Q ss_pred EEcCCCCEEEEEeCCeEEEEe
Q 047260 681 CWDTNGDYLASVSQNLVKVWS 701 (784)
Q Consensus 681 ~~spdg~~Lasgsdd~I~IwD 701 (784)
+++++|.+++-.+...+.++.
T Consensus 313 sis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEE
T ss_pred EECCCCCEEEEeCcccEEEEE
Confidence 778999988887766444443
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0051 Score=70.51 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=92.0
Q ss_pred cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC
Q 047260 448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH 527 (784)
Q Consensus 448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~ 527 (784)
+..+.++..|+.-|.+.+|..+.+. +.+... .+-.+.+..+..+++..++|.|+.
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~--------------~~~~~~-----------~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGE--------------MRKLKN-----------EGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred ecCCceEEEecccceEEEEecCchh--------------hhcccc-----------cCccceEEEEEecchhHhhhhhcC
Confidence 3455667788888888888665443 111111 113445667778888889999999
Q ss_pred CCeEEEEECCCCcee-----eec-CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc---ceeeeccCCCCCeEEE
Q 047260 528 DRKVVLWNMDTLQTE-----STP-EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN---FCSQAYTGHSSPIMSL 598 (784)
Q Consensus 528 Dg~I~IWd~~t~~~~-----~~l-~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~---~~~~~~~~h~~~V~sl 598 (784)
.|.|.|+-+...... ..+ ..|...|+|++|++++..|++|...|.|.+-.++... .....+....+.|..|
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL 176 (726)
T ss_pred CceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence 999999988653211 111 2478899999999999999999999999998887621 1122333456778777
Q ss_pred EEcCCCCcEEEEEe
Q 047260 599 DFHPKKTDLFCFCD 612 (784)
Q Consensus 599 ~~sp~~~~ll~sgs 612 (784)
++.. .+++++..
T Consensus 177 D~~q--~~LLVStl 188 (726)
T KOG3621|consen 177 DYLQ--SYLLVSTL 188 (726)
T ss_pred eccc--ceehHhhh
Confidence 7653 23444443
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.0061 Score=66.60 Aligned_cols=164 Identities=12% Similarity=0.118 Sum_probs=101.4
Q ss_pred eEEEEeCCCCeeEEeec----CCeeEEE---EecC----CCEEEEEEC---------C-CcEEEEECCCC----eEEEEE
Q 047260 616 EIQYWSINPFLCTHITK----GGTAQVR---FQPR----IGQLLAAAS---------D-KVVSIFDIETD----RQTHSL 670 (784)
Q Consensus 616 ~I~iwDl~~~~~~~~~~----~~v~~v~---fsp~----~~~Ll~~s~---------D-g~I~IwDl~t~----~~i~~l 670 (784)
.|++.|..+...+..+. ..+.+++ +..+ ..++++|+. . |.|.+|++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46666666655544433 2333333 3322 356666654 2 88999999884 122221
Q ss_pred --eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc-eEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 671 --QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-CIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 671 --~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~-~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
....++|++++-- +.+|+++..+.|.+|++...+ .+..-.. ....+.++... +++|++|.....|.++.++.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 2357889998866 444777778899999998877 4332222 22345555554 55999999888888775543
Q ss_pred --CceEEe--cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 747 --NKSMTI--AAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 747 --~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.+...+ ......++++.|-++++.++.+..+|.|.++
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 223222 2345568899998666799999999999886
No 363
>PRK10115 protease 2; Provisional
Probab=97.54 E-value=0.1 Score=63.09 Aligned_cols=237 Identities=8% Similarity=0.025 Sum_probs=125.0
Q ss_pred ceEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC------CeEEEEc
Q 047260 509 KVTCCHFSSDGKLLASSGH-----DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD------KSVRLWD 577 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D------g~I~IWd 577 (784)
.+..+.|+|||++|+.+.. ...|++.|+.++..+........ ..++|.+|++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 3677889999998887533 23589999988864333222222 469999998877665442 3677888
Q ss_pred CCCCc-ceeeeccCCCCCeE-EEEEcCCCCcEEEEEeC--CCeEEEEeCC--CC--eeEEeecCCeeEEEEecCCCEEEE
Q 047260 578 AANPN-FCSQAYTGHSSPIM-SLDFHPKKTDLFCFCDN--DNEIQYWSIN--PF--LCTHITKGGTAQVRFQPRIGQLLA 649 (784)
Q Consensus 578 l~~~~-~~~~~~~~h~~~V~-sl~~sp~~~~ll~sgs~--dg~I~iwDl~--~~--~~~~~~~~~v~~v~fsp~~~~Ll~ 649 (784)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+++.. .. .++......+.. .+...+..++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SLDHYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EEEeCCCEEEE
Confidence 88762 12233333333333 33334467766655443 4678888853 22 222222222221 22223345554
Q ss_pred EECC----CcEEEEECCCCeEEEEEeCC-C-CCEEEEEEcCCCCEEEEEe-CC--eEEEEeCCCCceEEEec-cCCCceE
Q 047260 650 AASD----KVVSIFDIETDRQTHSLQGH-A-ELVNYICWDTNGDYLASVS-QN--LVKVWSMASGECIQELS-SNGNQFH 719 (784)
Q Consensus 650 ~s~D----g~I~IwDl~t~~~i~~l~~h-~-~~V~sl~~spdg~~Lasgs-dd--~I~IwDl~t~~~i~~l~-~~~~~I~ 719 (784)
.+.. ..|...++........+..+ . ..|..+.+.. +.++++.. ++ .|.++|...+ .+..+. .....+.
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~ 362 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVT 362 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEe
Confidence 4432 23444455422222333334 3 3678888873 34444444 34 6677776543 344443 2222233
Q ss_pred EEEEe--cCCC-EEEEEECC---CeEEEEECCCCceE
Q 047260 720 SCVFH--PSYS-TLLVVGGI---SSLELWNMAENKSM 750 (784)
Q Consensus 720 sl~fs--pdg~-~L~s~s~d---g~I~Iwdl~~~~~~ 750 (784)
.+.++ +++. .+++.++. +.+..+|+.+++..
T Consensus 363 ~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 363 WIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 33344 3433 44444433 57899998876543
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.026 Score=63.79 Aligned_cols=187 Identities=6% Similarity=0.044 Sum_probs=96.5
Q ss_pred eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEE-----EEe
Q 047260 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQV-----RFQ 641 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v-----~fs 641 (784)
.|+||+..... .....-.+ +.|.++.|..+.. ++ +-..||.+++||+.... ..... ..+... .+.
T Consensus 62 ~I~iys~sG~l-l~~i~w~~-~~iv~~~wt~~e~-Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKL-LSSIPWDS-GRIVGMGWTDDEE-LV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCE-eEEEEECC-CCEEEEEECCCCe-EE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47777766433 22222222 7899999987654 44 45579999999996433 11111 122111 122
Q ss_pred cCCCEEEEEECCCcEEEEECCCCe-EEEEEeCCCC---------CEEE-EEEcCCCCEEEEEeCC-eEEEEeCCCCceEE
Q 047260 642 PRIGQLLAAASDKVVSIFDIETDR-QTHSLQGHAE---------LVNY-ICWDTNGDYLASVSQN-LVKVWSMASGECIQ 709 (784)
Q Consensus 642 p~~~~Ll~~s~Dg~I~IwDl~t~~-~i~~l~~h~~---------~V~s-l~~spdg~~Lasgsdd-~I~IwDl~t~~~i~ 709 (784)
.. + +++-..++.|.+..--... ..+.+..-.. .+.. ..++.+....+....+ .+.+.+-...+.
T Consensus 137 ~~-G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 137 KN-G-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CC-C-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 22 2 3333445555544332211 1111110000 0000 2233344443333333 555343322111
Q ss_pred EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec--ccCCceEEEEEeCCCC
Q 047260 710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA--AHENIISALAQSPVTG 769 (784)
Q Consensus 710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~--~h~~~V~slafspdg~ 769 (784)
+. ..+++..+++||++++|+.-..+|.+.+.+.+-.+.+... .-......+.|+-++-
T Consensus 213 -i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 -ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 21 2368999999999999999999999999876655554222 2235667777776543
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00037 Score=78.63 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=81.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeE-EEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVT-DVRFRPNSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It-~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
-.-.|.-+.|+|.-.+||++..+|.|.+..+. ...+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34458889999999999999999999999998 788888887888887 9999999999999999999999999998755
Q ss_pred eeeccCCCCCeEEEEEcC
Q 047260 585 SQAYTGHSSPIMSLDFHP 602 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp 602 (784)
..........|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 554444566788888864
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.52 E-value=0.013 Score=63.94 Aligned_cols=205 Identities=12% Similarity=0.136 Sum_probs=113.8
Q ss_pred eEEEEcCCCCcceeeeccCCCCCeEEEE---EcCC---CCcEEEEEeC---------C-CeEEEEeCCCC-----eeE--
Q 047260 572 SVRLWDAANPNFCSQAYTGHSSPIMSLD---FHPK---KTDLFCFCDN---------D-NEIQYWSINPF-----LCT-- 628 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~---~sp~---~~~ll~sgs~---------d-g~I~iwDl~~~-----~~~-- 628 (784)
.|++.|..+..............+.+++ +..+ ...++++|.. . |.|.++++... +..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5677777665532222112233444443 3322 1445555542 2 89999999873 222
Q ss_pred --EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEE--Ee
Q 047260 629 --HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-QTHSLQ-GHAELVNYICWDTNGDYLASVS-QNLVKV--WS 701 (784)
Q Consensus 629 --~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-~i~~l~-~h~~~V~sl~~spdg~~Lasgs-dd~I~I--wD 701 (784)
...++++++++-. +++| +++.++.|.+|++...+ ....-. .....+.++... +.+|++|. .+.|.+ |+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~l-v~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRL-VVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEE-EEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEE-EEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2334778887755 4554 44445899999998877 433322 233366666655 55777776 334554 45
Q ss_pred CCCCceEEEec--cCCCceEEEEEecCCCEEEEEECCCeEEEEECCC-------Cc-eE---EecccCCceEEE---EEe
Q 047260 702 MASGECIQELS--SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE-------NK-SM---TIAAHENIISAL---AQS 765 (784)
Q Consensus 702 l~t~~~i~~l~--~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~-------~~-~~---~~~~h~~~V~sl---afs 765 (784)
.... .+..+. .....+.++.|-+++..++++..+|.|.++.... +. .+ ........|+++ ++.
T Consensus 158 ~~~~-~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENN-KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCC-EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 4332 222332 2345688888886667899999999999997763 22 22 223345667777 444
Q ss_pred CC--CC------EEEEEECCCcEEE
Q 047260 766 PV--TG------MVASASHDSSVKL 782 (784)
Q Consensus 766 pd--g~------~LaSgs~DG~V~I 782 (784)
|. +. .++.++.+|.|.+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 51 22 4788889998863
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.024 Score=58.90 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=145.6
Q ss_pred eEEEEEcCCCC-EEEEEeCCCe-EEEEECCCCceeeecCCCCCC--eEEEEEccCCCEEEEEeCC-----CeEEEEcCCC
Q 047260 510 VTCCHFSSDGK-LLASSGHDRK-VVLWNMDTLQTESTPEDHKSV--VTDVRFRPNSSQLATASVD-----KSVRLWDAAN 580 (784)
Q Consensus 510 V~~l~fspdg~-~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~--It~i~fspdg~~Latgs~D-----g~I~IWdl~~ 580 (784)
-..++|+|... -++.+-.-|+ ..++|........++...++. --.=.|++||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34567777443 4555655554 567888776655444221111 1123689999999886443 7899999987
Q ss_pred CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE-eCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW-SINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659 (784)
Q Consensus 581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw-Dl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw 659 (784)
+-..+-.+..|.-....+.|.+||+.+++. +|-|..- |... ..|=.-+..-.+.+.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvva---nGGIethpdfgR--------------------~~lNldsMePSlvll 206 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVA---NGGIETHPDFGR--------------------TELNLDSMEPSLVLL 206 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEe---CCceecccccCc--------------------cccchhhcCccEEEE
Confidence 655566677777777889999999865554 3333332 1110 011122233455566
Q ss_pred ECCCCeEEEEE--e--CCCCCEEEEEEcCCCCEEEEEe-----CC-eEEEEeCCCCceEEEeccC-------CCceEEEE
Q 047260 660 DIETDRQTHSL--Q--GHAELVNYICWDTNGDYLASVS-----QN-LVKVWSMASGECIQELSSN-------GNQFHSCV 722 (784)
Q Consensus 660 Dl~t~~~i~~l--~--~h~~~V~sl~~spdg~~Lasgs-----dd-~I~IwDl~t~~~i~~l~~~-------~~~I~sl~ 722 (784)
|..++..+.+. . .+.-.|..++..+||..++.+- ++ --.|=-...++.+.-+... ...|-+++
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA 286 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA 286 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence 66666555432 2 2456788999999999888764 22 1222223345555444322 34577888
Q ss_pred EecCCCEEEEEECCC-eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 723 FHPSYSTLLVVGGIS-SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 723 fspdg~~L~s~s~dg-~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
.+.+..+++..+-.| ...+||..++..+....-.+ +..++- ...-++..+.+|.+.+
T Consensus 287 ~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~--~~~gf~vssg~G~~~~ 344 (366)
T COG3490 287 ANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAA--AKGGFAVSSGQGRIIF 344 (366)
T ss_pred ecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-ccccee--ccCceEEecCCceEEe
Confidence 887777777777665 78899999998874433221 122222 2233555556666654
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.032 Score=60.38 Aligned_cols=214 Identities=8% Similarity=0.022 Sum_probs=125.6
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--
Q 047260 555 VRFRPNSSQ-LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-- 631 (784)
Q Consensus 555 i~fspdg~~-Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-- 631 (784)
..|.++... +.+--..+.|.-|+..+++..... +.+.+.++.....+. .|+++. ..+.+++.+....+..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEecc
Confidence 356666553 444455778888988765532222 223345554444444 455553 34555555543332221
Q ss_pred -c-----CCeeEEEEecCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260 632 -K-----GGTAQVRFQPRIGQLLAAAS-----------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ 694 (784)
Q Consensus 632 -~-----~~v~~v~fsp~~~~Ll~~s~-----------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd 694 (784)
. ...+.+.+.|+|...+.... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 34467788888776554333 133555554 45666666666666788999999998887764
Q ss_pred --CeEEEEeCCC--C----ce-EEEeccCCCceEEEEEecCCCEEEEEECCC-eEEEEECCCCceE-EecccCCceEEEE
Q 047260 695 --NLVKVWSMAS--G----EC-IQELSSNGNQFHSCVFHPSYSTLLVVGGIS-SLELWNMAENKSM-TIAAHENIISALA 763 (784)
Q Consensus 695 --d~I~IwDl~t--~----~~-i~~l~~~~~~I~sl~fspdg~~L~s~s~dg-~I~Iwdl~~~~~~-~~~~h~~~V~sla 763 (784)
+.|.-|++.. + +. ...+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4777777652 1 11 122223345566778888888765554444 89999999 6666 4444447788888
Q ss_pred EeC-CCCE-EEEEEC
Q 047260 764 QSP-VTGM-VASASH 776 (784)
Q Consensus 764 fsp-dg~~-LaSgs~ 776 (784)
|-- +.+. ++|+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 874 4444 444433
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.47 E-value=0.038 Score=62.54 Aligned_cols=216 Identities=11% Similarity=0.109 Sum_probs=123.1
Q ss_pred CeEEEEEccCCCEEEEE-eCCC----eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC----------C
Q 047260 551 VVTDVRFRPNSSQLATA-SVDK----SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND----------N 615 (784)
Q Consensus 551 ~It~i~fspdg~~Latg-s~Dg----~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d----------g 615 (784)
.+..+.++|++++||.+ +..| .|+|+|+++++.+...+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34468899999998866 3333 59999999987544443321 123499999988787776443 2
Q ss_pred eEEEEeCCCCe----eEEeec-CC--eeEEEEecCCCEEEEEEC---C-CcEEEEECCCC----eEEEEEeCCCCCE-EE
Q 047260 616 EIQYWSINPFL----CTHITK-GG--TAQVRFQPRIGQLLAAAS---D-KVVSIFDIETD----RQTHSLQGHAELV-NY 679 (784)
Q Consensus 616 ~I~iwDl~~~~----~~~~~~-~~--v~~v~fsp~~~~Ll~~s~---D-g~I~IwDl~t~----~~i~~l~~h~~~V-~s 679 (784)
.|+.|.+.+.. .+.... .. ...+..+++++++++... + ..|.+.|+..+ .....+......+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 47888887542 222222 22 457788999999886554 3 46888898874 2333333334344 33
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCce---EEEeccCCCceEEEEEecCCCEEEEEECC-C--eEEEEECC-CCc
Q 047260 680 ICWDTNGDYLASVSQN----LVKVWSMASGEC---IQELSSNGNQFHSCVFHPSYSTLLVVGGI-S--SLELWNMA-ENK 748 (784)
Q Consensus 680 l~~spdg~~Lasgsdd----~I~IwDl~t~~~---i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g--~I~Iwdl~-~~~ 748 (784)
+... .+.+++...++ .|...++.+... ...+..+...+.-..+...+.+|+....+ + .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4333 44455544432 777778877652 33555555543333444445566555544 3 79999999 544
Q ss_pred eEEecc-cCCceEEEEEeCCCC
Q 047260 749 SMTIAA-HENIISALAQSPVTG 769 (784)
Q Consensus 749 ~~~~~~-h~~~V~slafspdg~ 769 (784)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455555455544
No 370
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.41 E-value=0.24 Score=55.71 Aligned_cols=260 Identities=11% Similarity=0.157 Sum_probs=147.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCce----eeecCCCCCCeEEEEEcc----CCCEEEEEeCCCeEEEEcCCCCc--------
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRP----NSSQLATASVDKSVRLWDAANPN-------- 582 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fsp----dg~~Latgs~Dg~I~IWdl~~~~-------- 582 (784)
...|++|+.+|.++||+...... +..-..-..+|..|..-. .....++.-.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 45899999999999999864321 111123457888877643 22233333566788888873211
Q ss_pred ceeeeccCCC--CCeEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--CeeEEEEecCCCEEEEEECCC
Q 047260 583 FCSQAYTGHS--SPIMSLDFHP----KKTDLFCFCDNDNEIQYWSINPFLCTHITKG--GTAQVRFQPRIGQLLAAASDK 654 (784)
Q Consensus 583 ~~~~~~~~h~--~~V~sl~~sp----~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~v~~v~fsp~~~~Ll~~s~Dg 654 (784)
..+.....|. .....+++-| .+..++++-+-||.+.+|+-+.....+.+.. -...+.|.+....+++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1112222222 2233333333 3367899999999999999987665555543 235678899989999999998
Q ss_pred cEEEEECCC--------------------Ce---EEEEEeCCCCC---EEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE
Q 047260 655 VVSIFDIET--------------------DR---QTHSLQGHAEL---VNYICWDTNGDYLASVSQNLVKVWSMASGECI 708 (784)
Q Consensus 655 ~I~IwDl~t--------------------~~---~i~~l~~h~~~---V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i 708 (784)
.|..|.... ++ +-.++. -... |..+.++.....+++-++..+.+.+- +|...
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~ 274 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLR 274 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEE
Confidence 998886421 00 111111 1122 23333433445666667777777775 45444
Q ss_pred EEeccCCCceEEEEEec----CC---CEEEEEECCCeEEEEECCCCceEEecccCCceEEEE---EeCCCCEEEEEECCC
Q 047260 709 QELSSNGNQFHSCVFHP----SY---STLLVVGGISSLELWNMAENKSMTIAAHENIISALA---QSPVTGMVASASHDS 778 (784)
Q Consensus 709 ~~l~~~~~~I~sl~fsp----dg---~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~sla---fspdg~~LaSgs~DG 778 (784)
...+-.-.+...+.|.. ++ ..+++++.++.+.||.=.+-.-.. .......+|. |..-..+|++-+.||
T Consensus 275 ~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA--~l~~~PVal~v~~~~~~~G~IV~Ls~~G 352 (418)
T PF14727_consen 275 FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSA--QLPHVPVALSVANFNGLKGLIVSLSDEG 352 (418)
T ss_pred EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEec--CCCCCCEEEEecccCCCCceEEEEcCCC
Confidence 33333222322232322 22 248889999999998633221111 1111122333 333356888889999
Q ss_pred cEEE
Q 047260 779 SVKL 782 (784)
Q Consensus 779 ~V~I 782 (784)
.|.+
T Consensus 353 ~L~v 356 (418)
T PF14727_consen 353 QLSV 356 (418)
T ss_pred cEEE
Confidence 8865
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.058 Score=58.35 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=132.4
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec---c
Q 047260 514 HFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY---T 589 (784)
Q Consensus 514 ~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~---~ 589 (784)
.|.++.. ++.+--..+.|.-|+..+++.. .+ .+...+.++.....+..|+++.. .+.+++.+++....... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VF-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EE-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 4667666 4455556788999998866442 22 23344555555555556666533 36677765544211111 1
Q ss_pred C-CCCCeEEEEEcCCCCcEEEEEe-----C-----CCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEEC-CC
Q 047260 590 G-HSSPIMSLDFHPKKTDLFCFCD-----N-----DNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAAS-DK 654 (784)
Q Consensus 590 ~-h~~~V~sl~~sp~~~~ll~sgs-----~-----dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~-Dg 654 (784)
+ .......+...|+|...+-+.. . -|.|+.+|. ....+..... ..+.++|+|+++.++.+.+ .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1 1234567788888874443333 1 133444443 3444444443 3367999999999888887 48
Q ss_pred cEEEEECCC--C----eE-EEEEeCCCCCEEEEEEcCCCCEEEEEeC-C-eEEEEeCCCCceEEEeccCCCceEEEEEe-
Q 047260 655 VVSIFDIET--D----RQ-THSLQGHAELVNYICWDTNGDYLASVSQ-N-LVKVWSMASGECIQELSSNGNQFHSCVFH- 724 (784)
Q Consensus 655 ~I~IwDl~t--~----~~-i~~l~~h~~~V~sl~~spdg~~Lasgsd-d-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs- 724 (784)
.|.-|++.. + +. ...+....+..-.++.+.+|.+.+++.. + .|.+|+.. ++.+..+..+...+.+++|-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 898888762 1 11 1222234456667888889998865443 3 99999998 99999998887778888885
Q ss_pred cCCCEEEEEECC
Q 047260 725 PSYSTLLVVGGI 736 (784)
Q Consensus 725 pdg~~L~s~s~d 736 (784)
++.+.|++.+..
T Consensus 265 ~~~~~L~iTs~~ 276 (307)
T COG3386 265 PDLNTLYITSAR 276 (307)
T ss_pred CCcCEEEEEecC
Confidence 455555555543
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.26 E-value=0.039 Score=65.11 Aligned_cols=184 Identities=10% Similarity=0.076 Sum_probs=108.9
Q ss_pred CCCeEEEEEcCCCCcEEEEEe-----CC--CeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECC-----------
Q 047260 592 SSPIMSLDFHPKKTDLFCFCD-----ND--NEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASD----------- 653 (784)
Q Consensus 592 ~~~V~sl~~sp~~~~ll~sgs-----~d--g~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~D----------- 653 (784)
...+.+.+++|++..++++.. .| ..|.+++................-.|+|+++.+++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 346788999999998777762 23 356666654322222222346778899998877776532
Q ss_pred -CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE---EeCCCCce-E---EEecc-CCCceEEEEEe
Q 047260 654 -KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKV---WSMASGEC-I---QELSS-NGNQFHSCVFH 724 (784)
Q Consensus 654 -g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~I---wDl~t~~~-i---~~l~~-~~~~I~sl~fs 724 (784)
+.+.+.+++.+.... .....|..+.|+|||..|+...++.|.| -....|+. + ..+.. ....+..+.|.
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 233333443332222 2355799999999999998888787766 44445541 1 11222 23346889999
Q ss_pred cCCCEEEEEECCCe--EEEEECCCCceEEecc--cCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260 725 PSYSTLLVVGGISS--LELWNMAENKSMTIAA--HENIISALAQSPVTGMVASASHDSSVK 781 (784)
Q Consensus 725 pdg~~L~s~s~dg~--I~Iwdl~~~~~~~~~~--h~~~V~slafspdg~~LaSgs~DG~V~ 781 (784)
.++.. +++..++. +...++.......+.. ....+.+|+-++. .|+....+|.+.
T Consensus 506 ~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 506 TGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99984 45555543 4444455333222222 3566777877763 455556666543
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.25 E-value=0.081 Score=60.12 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=78.8
Q ss_pred CceEEEEEcCC----CCEEEEEeCCCeEEEEECC-----CCceeeecCC-C--CCC--eEEEEEccCCCEEEEEeCCCeE
Q 047260 508 SKVTCCHFSSD----GKLLASSGHDRKVVLWNMD-----TLQTESTPED-H--KSV--VTDVRFRPNSSQLATASVDKSV 573 (784)
Q Consensus 508 ~~V~~l~fspd----g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~-h--~~~--It~i~fspdg~~Latgs~Dg~I 573 (784)
..|..+.|.|- ...|+..-....|.||.+. ..+.+..-.. . .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45889999984 3345556778899999875 2222222111 1 111 2457899998888777666555
Q ss_pred EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260 574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623 (784)
Q Consensus 574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~ 623 (784)
.++++......++.-....+.|.|.+|..||..++++.+..-.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 66776654433443335568899999999999999888877788999865
No 374
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.18 E-value=0.085 Score=53.46 Aligned_cols=203 Identities=12% Similarity=0.102 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc-CCCC-cEEEEEeCCCeEEEEeCCC--CeeEEee-----
Q 047260 561 SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH-PKKT-DLFCFCDNDNEIQYWSINP--FLCTHIT----- 631 (784)
Q Consensus 561 g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s-p~~~-~ll~sgs~dg~I~iwDl~~--~~~~~~~----- 631 (784)
+.++.+--..|.|+-||+.........+.+.. +.++.+- .++. .+.+.++..-.|.-||... ......+
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 44555555667788899988664444444322 2222221 1222 3445555555666677432 2222221
Q ss_pred ---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC--------CCEEEEEEcCCCCEEEEEe-CC-eEE
Q 047260 632 ---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA--------ELVNYICWDTNGDYLASVS-QN-LVK 698 (784)
Q Consensus 632 ---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~--------~~V~sl~~spdg~~Lasgs-dd-~I~ 698 (784)
+.....-..+|+|++ +.|.....=.++....+.+..-+.+|. ..-+.++|+.+.+.+.... -+ .|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 234455668899888 444431111122222233322233332 2335678988877666554 34 787
Q ss_pred EEe--CCCC-----ceEEEeccC----CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeC
Q 047260 699 VWS--MASG-----ECIQELSSN----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSP 766 (784)
Q Consensus 699 IwD--l~t~-----~~i~~l~~~----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafsp 766 (784)
-|| ..+| +.+..++.. .-....+++..+|...+++-..++|..+|..+++.+ ++.-....|+++||--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 787 5554 334444321 112234556778888888888889999999999987 5666688899999974
No 375
>PRK10115 protease 2; Provisional
Probab=97.18 E-value=0.31 Score=58.95 Aligned_cols=198 Identities=9% Similarity=0.027 Sum_probs=106.2
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEE
Q 047260 550 SVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQY 619 (784)
Q Consensus 550 ~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~i 619 (784)
-.+..+.|+|++++|+.+... ..|++.|+.++..+...+.+- -..++|.+++..++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 456778999999988876432 358889998765333333221 14699999988787776533 36888
Q ss_pred EeCCCC--eeEEeec---CCee-EEEEecCCCEEEEEEC---CCcEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCE
Q 047260 620 WSINPF--LCTHITK---GGTA-QVRFQPRIGQLLAAAS---DKVVSIFDIE--TDRQTHSLQGHAELVNYICWDTNGDY 688 (784)
Q Consensus 620 wDl~~~--~~~~~~~---~~v~-~v~fsp~~~~Ll~~s~---Dg~I~IwDl~--t~~~i~~l~~h~~~V~sl~~spdg~~ 688 (784)
+++.+. .....+. .... .+..+.++.++++.+. ++.+.+++.. .+.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 888765 2222332 2222 2233447777665554 4678999853 3332222322223323332 333333
Q ss_pred EEEEeCC----eEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEEEECCC--eEEEEECCCCceEEe
Q 047260 689 LASVSQN----LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLVVGGIS--SLELWNMAENKSMTI 752 (784)
Q Consensus 689 Lasgsdd----~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~~~ 752 (784)
++....+ .|...++........+..+ ...|..+.+..+ ..+++...++ .|.+++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333322 4544555521122233333 236777777733 3444444455 456666654444333
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.15 E-value=0.029 Score=66.17 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=114.8
Q ss_pred CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe------CCC--eEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260 528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS------VDK--SVRLWDAANPNFCSQAYTGHSSPIMSLD 599 (784)
Q Consensus 528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs------~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~ 599 (784)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|. .|.+++.. ........+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443322222222223334678999999999887765 244 44444543 2222223332 378889
Q ss_pred EcCCCCcEEEEEeC-----------CCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEE---EECCCCe
Q 047260 600 FHPKKTDLFCFCDN-----------DNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSI---FDIETDR 665 (784)
Q Consensus 600 ~sp~~~~ll~sgs~-----------dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I---wDl~t~~ 665 (784)
|+|++..+.+.... .+.+.+.+++.......+.+.+..+.|+|||.+++... ++.|++ -....+.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 99997755554322 23454445554333334567899999999999988776 477777 4444443
Q ss_pred E-E---EEEeC-CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEecc--CCCceEEEEEecCCCEEEEEECC
Q 047260 666 Q-T---HSLQG-HAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSS--NGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 666 ~-i---~~l~~-h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~~L~s~s~d 736 (784)
. + ..+.. -...+..+.|..++.+++...+. .+...++... ....+.. ....+..++-.+. .|++...+
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc-cccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 1 1 11222 23346889999999976554433 3444444422 2112222 2455666666653 46666666
Q ss_pred CeEEE
Q 047260 737 SSLEL 741 (784)
Q Consensus 737 g~I~I 741 (784)
+.+.+
T Consensus 560 g~~~l 564 (591)
T PRK13616 560 AVLQL 564 (591)
T ss_pred ceEEe
Confidence 64443
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.012 Score=65.48 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=93.6
Q ss_pred CCCEEEE-EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEeCCCC-c-eEEEe
Q 047260 643 RIGQLLA-AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGD--------YLASVSQNLVKVWSMASG-E-CIQEL 711 (784)
Q Consensus 643 ~~~~Ll~-~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~--------~Lasgsdd~I~IwDl~t~-~-~i~~l 711 (784)
+.+.|+. +.....|+-.|++.|+.+..++-+.. |+-+.+.|+.+ .|+.-+++.|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3344443 34467899999999999999987666 77777777654 355566779999998742 2 22222
Q ss_pred ccC----CCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-EEecccCCceEEEEEeCCCCEEEEEECC
Q 047260 712 SSN----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS-MTIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 712 ~~~----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~-~~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
..| .....|.+-..+| +|++|+.+|.|++||-..... ..+.+...+|..|..+.+|++|+..|..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 222 3445666665555 799999999999999733222 2667888899999999999988766643
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.08 E-value=0.23 Score=52.05 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=120.2
Q ss_pred CeEEEEEccCCCEEEEEeCCC--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260 551 VVTDVRFRPNSSQLATASVDK--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT 628 (784)
Q Consensus 551 ~It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~ 628 (784)
..-.+.|..++.++-+.+.-| .|+.+|+.+++..........---..|+... +.++...-.++...+||.++.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345678877888888877766 7899999998744333333333334455543 346777778999999999998887
Q ss_pred Eeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC-----CCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 047260 629 HITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH-----AELVNYICWDTNGDYLASVS-QNLVKVW 700 (784)
Q Consensus 629 ~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h-----~~~V~sl~~spdg~~Lasgs-dd~I~Iw 700 (784)
..+. +.-..++ .++..|+.......|+++|..+.+....+... -..++-+.|- +|.+.|-.= .+.|...
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 7665 3444455 57788888888899999999988777766532 2245667775 565555444 5699999
Q ss_pred eCCCCceEEEecc---------------CCCceEEEEEecCCCEEEEEECC
Q 047260 701 SMASGECIQELSS---------------NGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 701 Dl~t~~~i~~l~~---------------~~~~I~sl~fspdg~~L~s~s~d 736 (784)
|..+|+++..+.. .....+.++|.|....|++.+..
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 9999998887631 12457999999998888777754
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.08 E-value=0.0014 Score=45.01 Aligned_cols=38 Identities=34% Similarity=0.585 Sum_probs=33.8
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd 535 (784)
..+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
No 380
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.04 E-value=0.00087 Score=46.86 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHhhcCChHHHHHHHHHhcCCC
Q 047260 9 DKMLDVYIHDYFLKRKLHASAKAFMTEGKVA 39 (784)
Q Consensus 9 ~~~l~~yiydy~~k~~~~~~a~~~~~e~~~~ 39 (784)
++.|+..|++||.+.|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999998764
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.96 E-value=0.014 Score=69.96 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=89.7
Q ss_pred CCCcEEEEECCCCeEEEEEeCCCCC-EEEEEEcC------CCCEEEEEeCCeEEEEeCCCC--ceEEE-e--ccCCCceE
Q 047260 652 SDKVVSIFDIETDRQTHSLQGHAEL-VNYICWDT------NGDYLASVSQNLVKVWSMASG--ECIQE-L--SSNGNQFH 719 (784)
Q Consensus 652 ~Dg~I~IwDl~t~~~i~~l~~h~~~-V~sl~~sp------dg~~Lasgsdd~I~IwDl~t~--~~i~~-l--~~~~~~I~ 719 (784)
....|+-.|++.|+.+..+..+... |..++-.. +...++..+++.|..||.|-. +++.. . -.....+.
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 3588999999999999999987654 66554321 234566666779999999863 23321 1 12345577
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECC
Q 047260 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
|++-+.+| +|++|+.+|.|++||-...... .+.+-..+|.+|+.+.||++|+..|..
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 77777766 6999999999999995432222 455778999999999999988876644
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.90 E-value=0.037 Score=66.42 Aligned_cols=141 Identities=10% Similarity=0.042 Sum_probs=96.5
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeeecCCCCCC-eEEEEEcc-----CCCEEEEEeCCCeEEEEcCCCCc-ceee-ec
Q 047260 518 DGKLLASS-GHDRKVVLWNMDTLQTESTPEDHKSV-VTDVRFRP-----NSSQLATASVDKSVRLWDAANPN-FCSQ-AY 588 (784)
Q Consensus 518 dg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~-It~i~fsp-----dg~~Latgs~Dg~I~IWdl~~~~-~~~~-~~ 588 (784)
+.+.|+.. .....|+-.|++.|+.+..+..|... |..++-.. +..-.+.|-.+..+..||.+-.. .++. ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444332 34577999999999999999887754 55554321 23456777788899999988643 1221 11
Q ss_pred --cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260 589 --TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI 661 (784)
Q Consensus 589 --~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl 661 (784)
........|++-..+| .|++|+.+|.||+||--... .+..+..+|..|.++.+|+++++.|. ..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 1234567788777666 68899999999999954322 22334579999999999999988775 55666664
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.87 E-value=0.0024 Score=43.80 Aligned_cols=38 Identities=39% Similarity=0.631 Sum_probs=33.5
Q ss_pred ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577 (784)
Q Consensus 540 ~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd 577 (784)
+....+..|...|.++.|.+++..+++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566667889999999999999999999999999996
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.81 E-value=1.1 Score=49.96 Aligned_cols=216 Identities=11% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCCEEEEEe-CCCeEEEEECCC----CceeeecCC---CC----CCeEEEEEccCCCEEEEEeC------CCeEEEEcCC
Q 047260 518 DGKLLASSG-HDRKVVLWNMDT----LQTESTPED---HK----SVVTDVRFRPNSSQLATASV------DKSVRLWDAA 579 (784)
Q Consensus 518 dg~~Lasgs-~Dg~I~IWd~~t----~~~~~~l~~---h~----~~It~i~fspdg~~Latgs~------Dg~I~IWdl~ 579 (784)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+..-|+|++++++-. -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 678899999973 334444432 11 22334555578988888632 2567888877
Q ss_pred CCcceeeeccC---CCCCeEEEEEcCCCCcEEEEEeC--------------------CCeEEEEeCCCCeeEEeecCC--
Q 047260 580 NPNFCSQAYTG---HSSPIMSLDFHPKKTDLFCFCDN--------------------DNEIQYWSINPFLCTHITKGG-- 634 (784)
Q Consensus 580 ~~~~~~~~~~~---h~~~V~sl~~sp~~~~ll~sgs~--------------------dg~I~iwDl~~~~~~~~~~~~-- 634 (784)
+.+ +...... ...--..+-|.|..+ +++++.. ...+.+||+.+.+.+..+.-+
T Consensus 166 tf~-v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFE-VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccc-ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 654 3333322 223356677788655 5555432 358999999999888777632
Q ss_pred ---eeEEEE--ecCCCEEEEEEC-CCcEEEE-ECCCCe----EEEEEeCC-----------------CCCEEEEEEcCCC
Q 047260 635 ---TAQVRF--QPRIGQLLAAAS-DKVVSIF-DIETDR----QTHSLQGH-----------------AELVNYICWDTNG 686 (784)
Q Consensus 635 ---v~~v~f--sp~~~~Ll~~s~-Dg~I~Iw-Dl~t~~----~i~~l~~h-----------------~~~V~sl~~spdg 686 (784)
...|+| .|+..+-++++. ...|..| ..+.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 345665 455666555554 4555444 334332 22222210 2457999999999
Q ss_pred CEEEEEe--CCeEEEEeCCCC---ceEEEeccC----------------CCceEEEEEecCCCEEEEEEC
Q 047260 687 DYLASVS--QNLVKVWSMASG---ECIQELSSN----------------GNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 687 ~~Lasgs--dd~I~IwDl~t~---~~i~~l~~~----------------~~~I~sl~fspdg~~L~s~s~ 735 (784)
++|..+. .+.|+.||+.+. +.+..+... .+...-+..|-||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 669999999874 333332211 112356778889988887754
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.80 E-value=0.16 Score=51.58 Aligned_cols=175 Identities=15% Similarity=0.235 Sum_probs=96.9
Q ss_pred EEEEEeCCCeEEEEEC--CCCceeeecCC-----CCCCeEEEEEccCCCEEEEEeCC---------CeEEEEcCCCCcce
Q 047260 521 LLASSGHDRKVVLWNM--DTLQTESTPED-----HKSVVTDVRFRPNSSQLATASVD---------KSVRLWDAANPNFC 584 (784)
Q Consensus 521 ~Lasgs~Dg~I~IWd~--~t~~~~~~l~~-----h~~~It~i~fspdg~~Latgs~D---------g~I~IWdl~~~~~~ 584 (784)
+.+.++..-.|.=||. ...+..+++.. .....++-..+|+|++++-.-.| |.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 4444444444556773 23333333221 13455666778999985433222 33444433321
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD 664 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~ 664 (784)
+..+...-..-..++|+.+...+.++-+.+-+|.-||.+- -+|...+.=.|||++..
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~-----------------------~tG~~snr~~i~dlrk~ 206 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC-----------------------PTGDLSNRKVIFDLRKS 206 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC-----------------------CcccccCcceeEEeccC
Confidence 1111111222345667766665556556666666665431 01111233346666654
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726 (784)
Q Consensus 665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd 726 (784)
++...+. --.++.+.+|.+.+++-.+ +|...|..+|+.+.++.-....|++|+|--.
T Consensus 207 ~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 207 QPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCcCCCC-----CCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3322221 1224446678877777655 9999999999999999999999999999644
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.79 E-value=0.043 Score=49.56 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=66.6
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 510 VTCCHFSS---DG-KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 510 V~~l~fsp---dg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
|+++++.. || +.|++|+.|..|+||+-+ ..+..+. -.+.|++++-... ..|+.+..+|+|-+|+-.... -
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCccee--e
Confidence 56666655 43 479999999999999865 5556664 3456777776655 579999999999999764322 2
Q ss_pred eeccCCCCCeEEEEEc---CCCCcEEEEEeCCCeEE
Q 047260 586 QAYTGHSSPIMSLDFH---PKKTDLFCFCDNDNEIQ 618 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~s---p~~~~ll~sgs~dg~I~ 618 (784)
+.-. ...+.++.+. .+|..-|++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2212 2235555543 34555677777777764
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.41 E-value=0.32 Score=54.68 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=53.9
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEe----cCC-------------
Q 047260 667 THSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFH----PSY------------- 727 (784)
Q Consensus 667 i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fs----pdg------------- 727 (784)
...+......+.+|+.+|++.+.++. |+ .|.++|+.++..++.+++..+.- |.|. +..
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~t-DslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVT-DSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEE-cCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCC
Confidence 34455566678999999998877775 54 99999999998888877654321 1111 110
Q ss_pred --CE--EEEEECCCeEEEEECCCCceE
Q 047260 728 --ST--LLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 728 --~~--L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
.. ++.+-.-|.|.||++..+..+
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEE
Confidence 11 233344678999999887654
No 388
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.015 Score=66.18 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceE-EEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH-SCVFHPSYSTLLVVGGISSLELWNMAENKSMT 751 (784)
Q Consensus 674 ~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~-sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~ 751 (784)
...|..+.|+|.-.++|.+..+ .|.++.+. ...+.++..++..++ +++|.|||+.|++|-.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999998865 79999888 788888887777777 99999999999999999999999999998774
Q ss_pred e--cccCCceEEEEEeC
Q 047260 752 I--AAHENIISALAQSP 766 (784)
Q Consensus 752 ~--~~h~~~V~slafsp 766 (784)
- ......|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 3 55666788888863
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.40 E-value=1.1 Score=47.08 Aligned_cols=155 Identities=8% Similarity=0.030 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEE-CCCCeEE-EE
Q 047260 594 PIMSLDFHPKKTDLFCFC--DNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFD-IETDRQT-HS 669 (784)
Q Consensus 594 ~V~sl~~sp~~~~ll~sg--s~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD-l~t~~~i-~~ 669 (784)
.+.+.++++++..+.+.. .....++++..............+..-.|++++...++...+...+++. ...+... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998777766 4455666666554333333335677778999966555555566666663 3333221 22
Q ss_pred EeC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCC---CC------ceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260 670 LQG--HAELVNYICWDTNGDYLASVS----QNLVKVWSMA---SG------ECIQELSSNGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 670 l~~--h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~---t~------~~i~~l~~~~~~I~sl~fspdg~~L~s~s 734 (784)
+.. ....|..+.++|||..++... ++.|.|--+. .+ ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 122899999999999888766 4466666543 22 11222223356789999999998776666
Q ss_pred CCCe-EEE-EECCCCc
Q 047260 735 GISS-LEL-WNMAENK 748 (784)
Q Consensus 735 ~dg~-I~I-wdl~~~~ 748 (784)
..+. +.. .....+.
T Consensus 185 ~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGP 200 (253)
T ss_pred CCCCceeEEEEccCCc
Confidence 5542 333 4444443
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.27 Score=51.38 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=107.8
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEE-ECCC-cEEEEECCCCeEEEEEeCCCC--C
Q 047260 601 HPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAA-ASDK-VVSIFDIETDRQTHSLQGHAE--L 676 (784)
Q Consensus 601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~-s~Dg-~I~IwDl~t~~~i~~l~~h~~--~ 676 (784)
..++.+-+++.+.+|.|.. ...+......+.|+|....-++- -.-| ...+||......+..+...++ .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~--------~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVF--------ATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceee--------eeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 4566666666666665432 11223444567777766554333 3333 467888887765555433222 1
Q ss_pred EEEEEEcCCCCEEEEEeC------CeEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECC-------C-----
Q 047260 677 VNYICWDTNGDYLASVSQ------NLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-------S----- 737 (784)
Q Consensus 677 V~sl~~spdg~~Lasgsd------d~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-------g----- 737 (784)
.-.=+|+|||++|..... +.|-|||.+.+ ..+.++..|.-....+.|.+||+.++++... |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN 195 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN 195 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence 223479999999998763 27999999865 5778888888888999999999988887651 1
Q ss_pred ------eEEEEECCCCceE---Eec--ccCCceEEEEEeCCCCEEEEEEC
Q 047260 738 ------SLELWNMAENKSM---TIA--AHENIISALAQSPVTGMVASASH 776 (784)
Q Consensus 738 ------~I~Iwdl~~~~~~---~~~--~h~~~V~slafspdg~~LaSgs~ 776 (784)
++.+.|..++..+ ++. .+.-.|..++..+||..++.+-.
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 3444555555544 222 34557889999888877766533
No 391
>PHA02713 hypothetical protein; Provisional
Probab=96.35 E-value=0.29 Score=57.76 Aligned_cols=214 Identities=8% Similarity=0.053 Sum_probs=103.6
Q ss_pred eEEEEECCCCceee--ecCCCCCCeEEEEEccCCCEEEEEeCC------CeEEEEcCCCCcceeee-ccCCCCCeEEEEE
Q 047260 530 KVVLWNMDTLQTES--TPEDHKSVVTDVRFRPNSSQLATASVD------KSVRLWDAANPNFCSQA-YTGHSSPIMSLDF 600 (784)
Q Consensus 530 ~I~IWd~~t~~~~~--~l~~h~~~It~i~fspdg~~Latgs~D------g~I~IWdl~~~~~~~~~-~~~h~~~V~sl~~ 600 (784)
.+..||..+.+-.. .+...... .+++. -++.+++.|+.+ ..+..||..+....... ........ +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 46778887654322 22111111 12222 266777777754 34778888775432111 11111111 2222
Q ss_pred cCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEee--cCCeeEE-EEecCCCEEEEEECC-------------------
Q 047260 601 HPKKTDLFCFCDNDN-----EIQYWSINPFLCTHIT--KGGTAQV-RFQPRIGQLLAAASD------------------- 653 (784)
Q Consensus 601 sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~--~~~v~~v-~fsp~~~~Ll~~s~D------------------- 653 (784)
. +..+++.|+.++ .+..||..+..-.... ..+.... ...-++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 2 234777777653 4788898765433221 1111111 112245555556544
Q ss_pred ----CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C------CeEEEEeCCC-C--ceEEEeccCCCceE
Q 047260 654 ----KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q------NLVKVWSMAS-G--ECIQELSSNGNQFH 719 (784)
Q Consensus 654 ----g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d------d~I~IwDl~t-~--~~i~~l~~~~~~I~ 719 (784)
..|..||.++.+-...-.-.......-...-++++.+.|+ + ..+..||..+ . ..+..+........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 2477788876543211111111111111123456555554 2 1467899886 3 33344433322222
Q ss_pred EEEEecCCCEEEEEECCC--eEEEEECCCCceE
Q 047260 720 SCVFHPSYSTLLVVGGIS--SLELWNMAENKSM 750 (784)
Q Consensus 720 sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~ 750 (784)
.+++ ++...++|+.++ .+..||..+++-.
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 2222 666777888777 7888998887655
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.31 E-value=1.7 Score=47.76 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=43.7
Q ss_pred EEeccCCCceEEEEEecC-------CCEEEEEECCCeEEEEECCCCceE----Ee-cccCCceEEEEEeCCCCEEEEEEC
Q 047260 709 QELSSNGNQFHSCVFHPS-------YSTLLVVGGISSLELWNMAENKSM----TI-AAHENIISALAQSPVTGMVASASH 776 (784)
Q Consensus 709 ~~l~~~~~~I~sl~fspd-------g~~L~s~s~dg~I~Iwdl~~~~~~----~~-~~h~~~V~slafspdg~~LaSgs~ 776 (784)
..+..| ..+..+.|... +.++++.-..+.|....+.....+ .+ .....++..|++.|||.++++.+.
T Consensus 247 ~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 247 FAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred eeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 334333 44566666533 334555544568888887655333 22 234558999999999999998888
Q ss_pred CCcEE
Q 047260 777 DSSVK 781 (784)
Q Consensus 777 DG~V~ 781 (784)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88874
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.29 E-value=2.2 Score=51.56 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=125.1
Q ss_pred eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC--CCc-
Q 047260 530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK--KTD- 606 (784)
Q Consensus 530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~--~~~- 606 (784)
.||+++-. .....+. ....++....+.+...++.++.++.+...++................|.|++++|- ++.
T Consensus 471 ~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 37777655 1222222 33445555555566678888887888877877655222223344578999999975 444
Q ss_pred --EEEEEeCCCeEEEEeCCCCeeEEee--------cCCeeEEEEecCCCEEEEEECCCcEEEEEC--CCCeEEEEE--eC
Q 047260 607 --LFCFCDNDNEIQYWSINPFLCTHIT--------KGGTAQVRFQPRIGQLLAAASDKVVSIFDI--ETDRQTHSL--QG 672 (784)
Q Consensus 607 --ll~sgs~dg~I~iwDl~~~~~~~~~--------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl--~t~~~i~~l--~~ 672 (784)
+++.|.++..+.+.-..+..++..+ ...+.-..+-.+..+|+++..||.+.-|-+ .++..-..- .-
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l 627 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL 627 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence 8888887766655443332222221 123333445566788999999999876654 444322111 11
Q ss_pred CCCCEEEEEEcC-CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecC-CCEEEEEECCCeEEEEECCCCceE
Q 047260 673 HAELVNYICWDT-NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS-YSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 673 h~~~V~sl~~sp-dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd-g~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
...++.--.|+. ....+++++|.-..+|..+..-+...+.-. ..-.-|.|+.+ .+-.++....+.+++.-++.-..+
T Consensus 628 Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 628 GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH-HhhhhcccccccCCceEEEecCCceEEEEecchhhc
Confidence 233444445554 455677777775555654432222222111 11112223322 222333333445666665543332
Q ss_pred --EecccCCceEEEEEeCCCCEEEEEE
Q 047260 751 --TIAAHENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 751 --~~~~h~~~V~slafspdg~~LaSgs 775 (784)
....-...+..+++.+....+++.+
T Consensus 707 ~irtvpl~~~prrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 707 HIRTVPLGESPRRICYQESSLTFGVLS 733 (1096)
T ss_pred ceeeecCCCChhheEecccceEEEEEe
Confidence 1123334456677766444444443
No 394
>PRK13684 Ycf48-like protein; Provisional
Probab=96.28 E-value=2.4 Score=46.62 Aligned_cols=266 Identities=8% Similarity=-0.012 Sum_probs=130.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec----CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC-
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP- 581 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l----~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~- 581 (784)
...+++++|..+.+-+|+|. +|.|.. ..+.++.-... ......+.++.|.++ ..+++ +..+.| |..+++
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCC
Confidence 55799999986666666654 553332 11222221111 112334778888643 33444 444543 322322
Q ss_pred cceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEE-eecCCeeEEEEecCCCEEEEEECCCcE
Q 047260 582 NFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN--PFLCTH-ITKGGTAQVRFQPRIGQLLAAASDKVV 656 (784)
Q Consensus 582 ~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~--~~~~~~-~~~~~v~~v~fsp~~~~Ll~~s~Dg~I 656 (784)
+.-..... ........+.....+. .++++ ..|.|..-+-. +...+. ...+.+..+.+.+++. +++.+..|.+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~g-~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~i 195 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGT-AEMAT-NVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGNF 195 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCc-ceeee-ccceEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCceE
Confidence 11111110 0111122222222222 33333 34444322211 111111 1135567888888764 4455555655
Q ss_pred EEEECCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc----CCCceEEEEEecCCCEEE
Q 047260 657 SIFDIETDRQTHSL-QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS----NGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 657 ~IwDl~t~~~i~~l-~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~----~~~~I~sl~fspdg~~L~ 731 (784)
..-.-..++....+ ......++++.+.+++.+++++..+.+++=+...+..-..... ....+..+.+.+++. ++
T Consensus 196 ~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~ 274 (334)
T PRK13684 196 YSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IW 274 (334)
T ss_pred EEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EE
Confidence 43211122222222 2345678999999999988888777654323444432222211 223467888998776 55
Q ss_pred EEECCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 732 VVGGISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 732 s~s~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
+++.+|.|. .....++.-... .-....+.+.|..+++.++ .+..|.|..|+
T Consensus 275 ~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 275 AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 666677555 344544443221 2223577888887766666 45678877664
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.044 Score=65.84 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260 518 DGKLLASSGHDRKVVLWNMDTL-QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM 596 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~ 596 (784)
.+..++.|++.|.|-..|+... .....-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++ ..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence 3557899999999999998752 2222223456899999999999999999999999999999866 5666666665555
Q ss_pred EEE---EcCCCCcEEEEEeCCCe
Q 047260 597 SLD---FHPKKTDLFCFCDNDNE 616 (784)
Q Consensus 597 sl~---~sp~~~~ll~sgs~dg~ 616 (784)
.+- +..++. .+.+++..|.
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc
Confidence 443 333333 6777777776
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.16 E-value=0.35 Score=57.13 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=116.8
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCC------CeEEEEcCCCCcce
Q 047260 518 DGKLLASSGHDR------KVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVD------KSVRLWDAANPNFC 584 (784)
Q Consensus 518 dg~~Lasgs~Dg------~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~D------g~I~IWdl~~~~~~ 584 (784)
.+.+++.||.++ .|..||..+........ .+...-.+++.. ++.+.++|+.| .++..||..+....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 455667777663 58888887764333221 122223344444 56788889888 35778888876632
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEee--cCCeeEEEEe-cCCCEEEEEECC---
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCTHIT--KGGTAQVRFQ-PRIGQLLAAASD--- 653 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~--~~~v~~v~fs-p~~~~Ll~~s~D--- 653 (784)
. ...-...-..+....-+..++++|+.|| .|-.||..+.+..... .......... -++...++|+.+
T Consensus 363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 2 1111111111111222345888888886 4677777654433222 2223333332 344555566643
Q ss_pred ---CcEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEeCCCCceEEE--eccCCCceEE
Q 047260 654 ---KVVSIFDIETDRQTH--SLQGHAELVNYICWDTNGDYLASVS-QN-----LVKVWSMASGECIQE--LSSNGNQFHS 720 (784)
Q Consensus 654 ---g~I~IwDl~t~~~i~--~l~~h~~~V~sl~~spdg~~Lasgs-dd-----~I~IwDl~t~~~i~~--l~~~~~~I~s 720 (784)
.++..||..+.+-.. .+........ ++. -++.+.+.|+ ++ +|..||..+.+.... .......+..
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 457788887764322 2221111112 222 2455555555 32 588899887654322 2222222222
Q ss_pred EEEecCCCEEEEEECCC-----eEEEEECCCCceE
Q 047260 721 CVFHPSYSTLLVVGGIS-----SLELWNMAENKSM 750 (784)
Q Consensus 721 l~fspdg~~L~s~s~dg-----~I~Iwdl~~~~~~ 750 (784)
+. -++...++|+.|| +|..||..+++-.
T Consensus 519 ~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 519 VV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 22 2445566676664 6888887776654
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.15 E-value=0.26 Score=44.64 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=65.0
Q ss_pred eEEEEE---cCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260 595 IMSLDF---HPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ 671 (784)
Q Consensus 595 V~sl~~---sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~ 671 (784)
|+++++ ..++..-|++|+.|..|++|+-+...........++.++-... ..++.+..+|+|-+|+-. ..+..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeec
Confidence 445544 4566678899999999999998765555555677777776665 678999999999999863 3333444
Q ss_pred CCCCCEEEEEEcC-CC----CEEEEEeCCeE
Q 047260 672 GHAELVNYICWDT-NG----DYLASVSQNLV 697 (784)
Q Consensus 672 ~h~~~V~sl~~sp-dg----~~Lasgsdd~I 697 (784)
. +..+.++++.. ++ .+++.-+++.|
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 2 33355555433 33 24444445554
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.0078 Score=60.67 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=74.5
Q ss_pred EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeE-
Q 047260 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQ- 637 (784)
Q Consensus 563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~- 637 (784)
.+...+.||.|+-++++..+...+.-..|...-.- +....-+++|..+|.|++|..+..-. .......+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee----cccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34445678888888876544322222222222111 22233577788899999998873211 1111122222
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEE--eCC-eEEEEeCC
Q 047260 638 VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA-ELVNYICWDTNGDYLASV--SQN-LVKVWSMA 703 (784)
Q Consensus 638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-~~V~sl~~spdg~~Lasg--sdd-~I~IwDl~ 703 (784)
|....++.+.++++.+|.|+.|++.-.+.+-....|. .++..+.....+++|+.. +.+ .++.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 2233344577888889999999998887776666566 344444444444444443 222 45555543
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.13 E-value=2.6 Score=45.56 Aligned_cols=267 Identities=10% Similarity=0.047 Sum_probs=121.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC--C---CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED--H---KSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h---~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
...+.+|.|..+..-+++| ..+.| +-..+.++.-..... . .-...+|.|..+ ..++ ++..+. .+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCC
Confidence 4479999999555555554 45543 222232322221111 1 123567777643 3444 445553 33333333
Q ss_pred cceeeec--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--ee-EEeecCCeeEEEEecCCCEEEEEECCCcE
Q 047260 582 NFCSQAY--TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LC-THITKGGTAQVRFQPRIGQLLAAASDKVV 656 (784)
Q Consensus 582 ~~~~~~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~-~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I 656 (784)
+.-.+.. ..-......+....++. .+++ +..|.|+.-.-... +. .....+.+..+..++++.+++++.....+
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~-~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGS-AELA-GDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTE-EEEE-ETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCc-EEEE-cCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 3222211 11223334444443332 3333 33454433222111 11 12223567777788998877777665666
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeC-CCCceEEE----eccCCCceEEEEEecCCCEEE
Q 047260 657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSM-ASGECIQE----LSSNGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl-~t~~~i~~----l~~~~~~I~sl~fspdg~~L~ 731 (784)
.-||--...-...-......|..+.|.|++.+.+.+..+.|++=+. ...+.-.. +......+..++|.+++...+
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence 6777543222222223567899999999999888776668887772 22222111 112334478999998876444
Q ss_pred EEECCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 732 VVGGISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 732 s~s~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
++..|.| +...+.++.-... .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus 249 -~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 249 -VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred -EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 5555544 4455666544222 2345688888886655555 4578887665
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.01 E-value=2.7 Score=44.77 Aligned_cols=215 Identities=12% Similarity=0.098 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCceeeecCC-----CCCCeEEEEEccCCC------------EEE
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMD-------TLQTESTPED-----HKSVVTDVRFRPNSS------------QLA 565 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~-------t~~~~~~l~~-----h~~~It~i~fspdg~------------~La 565 (784)
-+.|+|+|.+.+-++....+...+||.. ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5779999999888888888999999986 1122333331 234678888875332 367
Q ss_pred EEeCCCeEEEEcCCCCcc----eeeecc-CCCCCe-EEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeEE--eecCCe
Q 047260 566 TASVDKSVRLWDAANPNF----CSQAYT-GHSSPI-MSLDFHP--KKTDLFCFCDNDNEIQYWSINPFLCTH--ITKGGT 635 (784)
Q Consensus 566 tgs~Dg~I~IWdl~~~~~----~~~~~~-~h~~~V-~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~~~~--~~~~~v 635 (784)
.+++||+|.-|.-.-... ....+. .....| ..+++.. .+..++++--..++|.+||-.-.+... .+..+-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532221 111111 112333 3445443 355566666678999999865222110 111110
Q ss_pred ----------------eEEEE---ecCCCEEEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcC------CCCE
Q 047260 636 ----------------AQVRF---QPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDT------NGDY 688 (784)
Q Consensus 636 ----------------~~v~f---sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~sp------dg~~ 688 (784)
.-|.| .++...-+.+..-|.|-+||+. +..++.+. +.-..-..|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00111 1122222223334789999986 66666663 2223445566654 4666
Q ss_pred EEEEe-CCeEEEEeCCCCceEEEeccCCC------ceEEEEEec
Q 047260 689 LASVS-QNLVKVWSMASGECIQELSSNGN------QFHSCVFHP 725 (784)
Q Consensus 689 Lasgs-dd~I~IwDl~t~~~i~~l~~~~~------~I~sl~fsp 725 (784)
|+.-- |++|.+||..+++.+..+....+ .++.+.|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66544 66999999999998887765433 235555544
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.01 E-value=2.5 Score=44.39 Aligned_cols=175 Identities=7% Similarity=0.008 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEeec--CCe--eEEEEecCCCEEEEEE-CCCcEEEEECCCCeEE
Q 047260 595 IMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHITK--GGT--AQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQT 667 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v--~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i 667 (784)
...+.|..++. ++-+.+.-| .|+.+|+.+++...... ... ..++.. ++.|+.-+ .++...+||..+.+.+
T Consensus 47 TQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 45677755554 666666655 79999999887665443 222 223333 34555444 4899999999999998
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC-----CCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260 668 HSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN-----GNQFHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 668 ~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~-----~~~I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
..+.- .+.=..++. .+..++++-+.+.|.++|..+.+.+.++... -..++.+.|. +|...+=.-....|...
T Consensus 124 ~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 124 GTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 88863 345566663 2334455545569999999988877766532 2245667776 44444444445678888
Q ss_pred ECCCCceEEecc-------------c---CCceEEEEEeCCCCEEEEEE
Q 047260 743 NMAENKSMTIAA-------------H---ENIISALAQSPVTGMVASAS 775 (784)
Q Consensus 743 dl~~~~~~~~~~-------------h---~~~V~slafspdg~~LaSgs 775 (784)
|..+|++..... + .+..+.|+|.|..+.|...+
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999988763210 1 35689999998877555444
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.94 E-value=0.4 Score=56.60 Aligned_cols=214 Identities=13% Similarity=0.068 Sum_probs=110.8
Q ss_pred CCEEEEEeCC------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeE
Q 047260 561 SSQLATASVD------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCT 628 (784)
Q Consensus 561 g~~Latgs~D------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~ 628 (784)
+.+++.|+.+ ..|..||..++......-......-.++++..+ .++++|+.| ..+..||.+...-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCcee
Confidence 4455666665 367788888764322222222233444555433 588888888 35777888765533
Q ss_pred Eeec--CCeeEEEEe-cCCCEEEEEECCC-----cEEEEECCCCeEEEEEeCCCCCEEEEE-EcCCCCEEEEEe-C----
Q 047260 629 HITK--GGTAQVRFQ-PRIGQLLAAASDK-----VVSIFDIETDRQTHSLQGHAELVNYIC-WDTNGDYLASVS-Q---- 694 (784)
Q Consensus 629 ~~~~--~~v~~v~fs-p~~~~Ll~~s~Dg-----~I~IwDl~t~~~i~~l~~h~~~V~sl~-~spdg~~Lasgs-d---- 694 (784)
.... ..-..+... -+|...++|+.|| +|..||.++.+-...-. ......... ..-+|++.++|+ +
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 3221 222222222 2445566677664 47778877654221111 111222221 123566666665 2
Q ss_pred --CeEEEEeCCCCceEE--EeccCCCceEEEEEecCCCEEEEEECCC-----eEEEEECCCCceEEecccCCceEEEEE-
Q 047260 695 --NLVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYSTLLVVGGIS-----SLELWNMAENKSMTIAAHENIISALAQ- 764 (784)
Q Consensus 695 --d~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~~L~s~s~dg-----~I~Iwdl~~~~~~~~~~h~~~V~slaf- 764 (784)
+++..||..+.+... .+........ ++. -++...++||.|+ +|..||..+.+...+..-......+..
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 268899988765432 2222222222 222 2445566666554 488899998877654322222222211
Q ss_pred eCCCCEEEEEECCCc
Q 047260 765 SPVTGMVASASHDSS 779 (784)
Q Consensus 765 spdg~~LaSgs~DG~ 779 (784)
.-++.+.++|+.||.
T Consensus 520 ~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 520 VLGGKLYAVGGFDGN 534 (571)
T ss_pred EECCEEEEEecccCc
Confidence 224667788888874
No 403
>PHA02713 hypothetical protein; Provisional
Probab=95.92 E-value=0.6 Score=55.10 Aligned_cols=204 Identities=5% Similarity=-0.009 Sum_probs=95.7
Q ss_pred eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEeec--CCe-eEEEEec
Q 047260 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCTHITK--GGT-AQVRFQP 642 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~~~~~--~~v-~~v~fsp 642 (784)
.+..||..+..............-.+++.. ++.+++.|+.+ ..+..||..+........ .+. ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 467788776552211111111111222322 34477777643 347788887654332221 111 1112233
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeC---------------------
Q 047260 643 RIGQLLAAASDK-----VVSIFDIETDRQTH--SLQGHAELVNYICWDTNGDYLASVSQ--------------------- 694 (784)
Q Consensus 643 ~~~~Ll~~s~Dg-----~I~IwDl~t~~~i~--~l~~h~~~V~sl~~spdg~~Lasgsd--------------------- 694 (784)
++..+++|+.++ .+..||..+.+-.. .+.........+. -+|++.+.|+.
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 455566666543 48889988753221 1111111111222 25666666552
Q ss_pred ---CeEEEEeCCCCceE--EEeccCCCceEEEEEecCCCEEEEEECC------CeEEEEECCC-CceEEec---ccCCce
Q 047260 695 ---NLVKVWSMASGECI--QELSSNGNQFHSCVFHPSYSTLLVVGGI------SSLELWNMAE-NKSMTIA---AHENII 759 (784)
Q Consensus 695 ---d~I~IwDl~t~~~i--~~l~~~~~~I~sl~fspdg~~L~s~s~d------g~I~Iwdl~~-~~~~~~~---~h~~~V 759 (784)
+.+..||..+.+-. ..+... .....+..-++...++|+.+ ..+..||..+ ++-..+. ......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~--r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTG--TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcc--cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 24777887765432 222111 11222223345555555543 2478899887 5543222 222222
Q ss_pred EEEEEeCCCCEEEEEECCC--cEEEe
Q 047260 760 SALAQSPVTGMVASASHDS--SVKLW 783 (784)
Q Consensus 760 ~slafspdg~~LaSgs~DG--~V~IW 783 (784)
..+. -++++.++||.|| .|-.|
T Consensus 507 ~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 507 HTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred eeEE--ECCEEEEEeeecceeehhhc
Confidence 2222 2678888999888 44444
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.92 E-value=1.5 Score=53.33 Aligned_cols=224 Identities=9% Similarity=0.053 Sum_probs=117.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecCCCCCC--------eEEEEEcc----------------CCCEEEEEeCCCeEE
Q 047260 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV--------VTDVRFRP----------------NSSQLATASVDKSVR 574 (784)
Q Consensus 519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--------It~i~fsp----------------dg~~Latgs~Dg~I~ 574 (784)
+..|++++.++.|.-.|..+++.+..+...... +..+.+.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888999888888776532211 12233321 344788888999999
Q ss_pred EEcCCCCcceeeeccCCCCCeE-------------EEEEcC--CCCcEEEEEeC----------CCeEEEEeCCCCeeEE
Q 047260 575 LWDAANPNFCSQAYTGHSSPIM-------------SLDFHP--KKTDLFCFCDN----------DNEIQYWSINPFLCTH 629 (784)
Q Consensus 575 IWdl~~~~~~~~~~~~h~~~V~-------------sl~~sp--~~~~ll~sgs~----------dg~I~iwDl~~~~~~~ 629 (784)
-.|.++++.+.. +. ..+.|. .+.-.| .+. .+++++. +|.|+-+|.++++.+-
T Consensus 274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999885533 21 111110 011111 122 3444432 5889999999888876
Q ss_pred eecCCeeEEE-EecCCCEEEEEECCC-cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCeEEEEeCCCCc
Q 047260 630 ITKGGTAQVR-FQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHAELVNYICWDTNGD-YLASVSQNLVKVWSMASGE 706 (784)
Q Consensus 630 ~~~~~v~~v~-fsp~~~~Ll~~s~Dg-~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~-~Lasgsdd~I~IwDl~t~~ 706 (784)
.+........ ..+.+.....++... ....+|.+.+....-. +...+ .+....+ ...-...+.|.-.|.++|+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCCc
Confidence 6542100000 001222111111111 3444555544332211 11110 0100000 0000113468888999998
Q ss_pred eEEEeccCCCceEE---------EEEec-CCC---EEEEEECCCeEEEEECCCCceE
Q 047260 707 CIQELSSNGNQFHS---------CVFHP-SYS---TLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 707 ~i~~l~~~~~~I~s---------l~fsp-dg~---~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
.+..+......+.+ +.+.. +++ .++.++.+|.++++|.++++.+
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 88777542222111 12222 453 6888999999999999999876
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.74 E-value=0.013 Score=68.77 Aligned_cols=173 Identities=15% Similarity=0.148 Sum_probs=108.5
Q ss_pred eecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCceeeec-----CCCCCCeEEEEEcc---CCCEEEEEeCCC
Q 047260 503 IRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD--TLQTESTP-----EDHKSVVTDVRFRP---NSSQLATASVDK 571 (784)
Q Consensus 503 l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~--t~~~~~~l-----~~h~~~It~i~fsp---dg~~Latgs~Dg 571 (784)
+++..+.|-.+.|.. +...++ -.-|.+.|||++ .|+....+ ......+.-|.|+| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 466778888888854 222232 334678899886 33332222 22334455666666 566777777889
Q ss_pred eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEE
Q 047260 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAA 651 (784)
Q Consensus 572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s 651 (784)
+|++..+.... ...+.+|...+..++|...|-..+.. ++|||..+++++
T Consensus 206 ~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~-----------------------------lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 206 EIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLAS-----------------------------LSPDGTVFAWAI 254 (1283)
T ss_pred ceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhhee-----------------------------eCCCCcEEEEee
Confidence 99988877543 36677799999998887665433322 577888888888
Q ss_pred CCCcEEEEEC-----CCCeEEEEEeCCC-CCEEEEEEcCC---------CCEEEEEeC-C-eEEEEeCCCCceE
Q 047260 652 SDKVVSIFDI-----ETDRQTHSLQGHA-ELVNYICWDTN---------GDYLASVSQ-N-LVKVWSMASGECI 708 (784)
Q Consensus 652 ~Dg~I~IwDl-----~t~~~i~~l~~h~-~~V~sl~~spd---------g~~Lasgsd-d-~I~IwDl~t~~~i 708 (784)
.||.++.|.+ ...++++.++.|. .+-.|.-++.. -.++++++| + .+++|.....+|+
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 8887776654 3345566666666 33333333321 124455553 3 8999998888776
No 406
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.72 E-value=4.5 Score=45.05 Aligned_cols=192 Identities=11% Similarity=0.038 Sum_probs=105.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecCCC--CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC-CC
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDH--KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS-SP 594 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~-~~ 594 (784)
+++ ++++..+|.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.+..+|.+++... -.+.... ..
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~-W~~~~~~~~~ 144 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLV-WSRNVGGSPY 144 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEE-EEEecCCCeE
Confidence 454 444578888888898888866544322 12333333333665 788888998889998776633 2222222 11
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe-eEE--E--EecCCCEEEEEEC--CCcEEEEECCCCeEE
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT-AQV--R--FQPRIGQLLAAAS--DKVVSIFDIETDRQT 667 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v-~~v--~--fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i 667 (784)
+..-.+..++ .+..++.++.+...|..++.......... ... . .......++++.. ++.+.-+|.+++...
T Consensus 145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111222222 34444467888888888776655433221 111 1 1123345566655 667888888888777
Q ss_pred EEEeCC----CCCE--E-EE---EEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC
Q 047260 668 HSLQGH----AELV--N-YI---CWDTNGDYLASVSQNLVKVWSMASGECIQELSSN 714 (784)
Q Consensus 668 ~~l~~h----~~~V--~-sl---~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~ 714 (784)
...+.+ ...+ . .+ ...-++..++....+.+...|..+++.+.++...
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 664311 1111 0 00 1111233333334557889999999998888763
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.24 Score=55.62 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=95.9
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCC-------EEEEEECCCcEEEEECCCCeE--EEEEe
Q 047260 603 KKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIG-------QLLAAASDKVVSIFDIETDRQ--THSLQ 671 (784)
Q Consensus 603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~-------~Ll~~s~Dg~I~IwDl~t~~~--i~~l~ 671 (784)
+.+.++.++.....|+-.|++.++.+...+ ..|.-+.+.|+.. .-++|-++..|+-||.+-... +....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 445556666677789999999988876654 5567777777653 346777899999999985322 22222
Q ss_pred C----CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260 672 G----HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744 (784)
Q Consensus 672 ~----h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl 744 (784)
+ ......|++-..+|.+++.+-+|.|++||--.......+.+-+.+|..+..+.+|++|++.+. ..|.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 2 233566777666776555555679999997433444567788899999999999997766554 45555553
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=1.8 Score=45.68 Aligned_cols=194 Identities=11% Similarity=0.137 Sum_probs=111.7
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 047260 546 EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF 625 (784)
Q Consensus 546 ~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~ 625 (784)
.+-...|.++.|+|+.+.|++......-.||=..++..+...-...-.....|.+..++. ++++-..+..+.++.++..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 344556999999999999988887777777755555533322222233455677765554 5556667888888877643
Q ss_pred eeEEee-------------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE---EEEEeCC-------CCCEEEEEE
Q 047260 626 LCTHIT-------------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ---THSLQGH-------AELVNYICW 682 (784)
Q Consensus 626 ~~~~~~-------------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~~h-------~~~V~sl~~ 682 (784)
..+... ..+...++|.|....|+++-+..-+.||.+..... ++....+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 221111 23456789999999999999988888887664321 1111111 124666778
Q ss_pred cCCCCE-EEEEeCC-eEEEEeCCCCceEEEeccCC---------CceEEEEEecCCCEEEEEECCCeEEEE
Q 047260 683 DTNGDY-LASVSQN-LVKVWSMASGECIQELSSNG---------NQFHSCVFHPSYSTLLVVGGISSLELW 742 (784)
Q Consensus 683 spdg~~-Lasgsdd-~I~IwDl~t~~~i~~l~~~~---------~~I~sl~fspdg~~L~s~s~dg~I~Iw 742 (784)
++.... |+-+.+. .|.-.|.. |..+..+.-+. ...-.++..++|. |+.++.-+-.+.|
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F 309 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF 309 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence 765444 4444444 55555654 33344332211 1124556665554 4455544444333
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.59 E-value=3 Score=46.43 Aligned_cols=141 Identities=7% Similarity=-0.014 Sum_probs=77.4
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-eEEEEcCCCC--cc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCC
Q 047260 550 SVVTDVRFRPNSSQLATAS-----------VDK-SVRLWDAANP--NF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614 (784)
Q Consensus 550 ~~It~i~fspdg~~Latgs-----------~Dg-~I~IWdl~~~--~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d 614 (784)
.....|+|.++|+++++-. ..+ .|.+++-.++ .. ....+...-.....+++.+++ ++++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCC
Confidence 3456788888888776643 123 6666654322 21 123333333456888998877 5554 334
Q ss_pred CeEEEEeCCC-------CeeE-Eeec-------CCeeEEEEecCCCEEEEEECC-------------------CcEEEEE
Q 047260 615 NEIQYWSINP-------FLCT-HITK-------GGTAQVRFQPRIGQLLAAASD-------------------KVVSIFD 660 (784)
Q Consensus 615 g~I~iwDl~~-------~~~~-~~~~-------~~v~~v~fsp~~~~Ll~~s~D-------------------g~I~IwD 660 (784)
..+++.|.+. .+.+ ..+. .....++|.|++..+++.+.. +.|.-+|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333445532 1111 1121 124578899998776655521 4456666
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ 694 (784)
Q Consensus 661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd 694 (784)
...++.. .+.........++|+++|+++++-.+
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 6554432 22222234567999999998876543
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.45 E-value=1.8 Score=48.35 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=93.5
Q ss_pred CCcEEEEEeCCCeEEEEeCCC----CeeEEeec----------CCeeEEEEecCCCEEEEEEC------CCcEEEEECCC
Q 047260 604 KTDLFCFCDNDNEIQYWSINP----FLCTHITK----------GGTAQVRFQPRIGQLLAAAS------DKVVSIFDIET 663 (784)
Q Consensus 604 ~~~ll~sgs~dg~I~iwDl~~----~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~------Dg~I~IwDl~t 663 (784)
.+++++-|-..+.|+|+|+.+ .+..+.++ .....+..-|+|+.++++-. .|.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 445666666889999999873 33333333 12234556678878777643 36788999988
Q ss_pred CeEEEEEeCCC---CCEEEEEEcCCCCEEEEEe--------------------CC-eEEEEeCCCCceEEEeccCCC--c
Q 047260 664 DRQTHSLQGHA---ELVNYICWDTNGDYLASVS--------------------QN-LVKVWSMASGECIQELSSNGN--Q 717 (784)
Q Consensus 664 ~~~i~~l~~h~---~~V~sl~~spdg~~Lasgs--------------------dd-~I~IwDl~t~~~i~~l~~~~~--~ 717 (784)
.+......... ..-..+-|.|..+.+++.+ -+ ++.+||+.+.+.+.++.-... .
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 87777766422 2445677888888888763 13 899999999999999976543 3
Q ss_pred eEEEEEe--cCCCEEEE-EECCCeEEEEEC-CCCc-----eEEecc-----------------cCCceEEEEEeCCCCEE
Q 047260 718 FHSCVFH--PSYSTLLV-VGGISSLELWNM-AENK-----SMTIAA-----------------HENIISALAQSPVTGMV 771 (784)
Q Consensus 718 I~sl~fs--pdg~~L~s-~s~dg~I~Iwdl-~~~~-----~~~~~~-----------------h~~~V~slafspdg~~L 771 (784)
...+.|. |+..+=++ +.-..+|..|-- ..++ .+.+.. -..-|+.|..|.|+++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 4556654 55555333 334445555533 4432 122211 13558999999999999
Q ss_pred EEEEC-CCcEEEeC
Q 047260 772 ASASH-DSSVKLWK 784 (784)
Q Consensus 772 aSgs~-DG~V~IWd 784 (784)
+..+. +|.|+.||
T Consensus 327 Yvs~W~~GdvrqYD 340 (461)
T PF05694_consen 327 YVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcccCCcEEEEe
Confidence 88876 89999886
No 411
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=4.3 Score=42.93 Aligned_cols=266 Identities=10% Similarity=0.037 Sum_probs=137.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC--CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED--HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
.+-+..+.++ +++...+..+.-++|.|+.+......+.. ..+--.++.. .|++..++..|.-+.+.|+.++...
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 4456777776 45777777777799999986544333221 1133334444 5889999987777889999876533
Q ss_pred e--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEee--cCCeeEEEEecCCCEEEEEECCCcEE
Q 047260 585 S--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHIT--KGGTAQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 585 ~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
. ..+......-..++.+ |+ ....+..|+-+.+-|+.... .+... ...+..+..+++ +.++.-.+--+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceE
Confidence 2 2222333334556665 33 44455678889999986432 22222 235556655554 444445555677
Q ss_pred EEECCCCeEEEEEeC-CCCCEEEE-EEcCCCCEEEEEeCC-eEEEEeCCCCc---eEEEeccCCCceEEEEEecCCCEEE
Q 047260 658 IFDIETDRQTHSLQG-HAELVNYI-CWDTNGDYLASVSQN-LVKVWSMASGE---CIQELSSNGNQFHSCVFHPSYSTLL 731 (784)
Q Consensus 658 IwDl~t~~~i~~l~~-h~~~V~sl-~~spdg~~Lasgsdd-~I~IwDl~t~~---~i~~l~~~~~~I~sl~fspdg~~L~ 731 (784)
+.|....+....+.. ....+.++ .+.-.+++......+ .+-+-|+.+.. ....+......-..+... +.++.
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~y 314 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNY 314 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeE
Confidence 788777664444322 11222222 122234444443322 44444544321 111222211122222222 22333
Q ss_pred EEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 732 VVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 732 s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.+..+ ...+-+....+.+ ...+....+.+.+.+-+.+.+.+...++.+.||+
T Consensus 315 iadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 315 IADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred eccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 33333 3444444443333 1112222334444444566888889999999986
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=2 Score=45.37 Aligned_cols=191 Identities=12% Similarity=0.130 Sum_probs=117.1
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCC-CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDH-KSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
+.+-+..|.++.|+|+.+.|++......-.||=..+|..+.++.-. -.....|.+..++.+.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445556999999999998888887777777777778888877421 223456788878877777777888888877654
Q ss_pred ccee---------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-e--E----------EeecCCeeEEE
Q 047260 582 NFCS---------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-C--T----------HITKGGTAQVR 639 (784)
Q Consensus 582 ~~~~---------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~--~----------~~~~~~v~~v~ 639 (784)
.... ............++|.|....+++ .-+..-+.||.++... . . ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211 111122556788999998875555 4445555555544211 1 1 11123456677
Q ss_pred EecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCC
Q 047260 640 FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHA---------ELVNYICWDTNGDYLASVSQN 695 (784)
Q Consensus 640 fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~---------~~V~sl~~spdg~~Lasgsdd 695 (784)
|++..+.|++-+. ++.|...|.... ++..+.-+. .....|+.+++|.+.+++.-+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8876666666555 677777776543 333322111 123456677777665555433
No 413
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.41 E-value=5.2 Score=49.16 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=97.0
Q ss_pred CCCCCeEEEEEc---c----CCCEEEEEeCCCeEEEEcCCCCcc--------------eeeecc---CCCCCeEEEEEcC
Q 047260 547 DHKSVVTDVRFR---P----NSSQLATASVDKSVRLWDAANPNF--------------CSQAYT---GHSSPIMSLDFHP 602 (784)
Q Consensus 547 ~h~~~It~i~fs---p----dg~~Latgs~Dg~I~IWdl~~~~~--------------~~~~~~---~h~~~V~sl~~sp 602 (784)
.-..+|..|+|. . ..++|++= ....+.|+...-.+. ++..+. -...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888888 2 22344443 445666666211110 111111 1123566777887
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEE
Q 047260 603 KKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW 682 (784)
Q Consensus 603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~ 682 (784)
.....|++.+..|...|||+...... ... ..-+.....|.| ++|.. .......|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~---~~~----------~~~~~~~~~gsi-~~d~~----------e~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKR---KSS----------NLRLSRNISGSI-IFDPE----------ELSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEecccccc---CCc----------ceeeccCCCccc-cCCCc----------ccCcceeeEe
Confidence 77667777777888888887211100 000 111111222333 23322 1145567899
Q ss_pred cCCCCEEEEEeCCeEEEEeCCCCceEE--EeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCC
Q 047260 683 DTNGDYLASVSQNLVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAE 746 (784)
Q Consensus 683 spdg~~Lasgsdd~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~ 746 (784)
.++-..|++++...+.++|+.+..... ........|.++.-++... ++++- ....|...++..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 999889999988899999999875532 1223446788888887732 22222 335677777766
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.20 E-value=4.2 Score=42.77 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=87.0
Q ss_pred CeEEEEEccCCCEEEEEe---CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCC-
Q 047260 551 VVTDVRFRPNSSQLATAS---VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS-INPF- 625 (784)
Q Consensus 551 ~It~i~fspdg~~Latgs---~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD-l~~~- 625 (784)
.+.+.++++++..++... ....+.++..... ......+ ..+....|.+++. +.+....+...+++. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccC--CccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999887766 3345666655432 2222232 3678889999955 555555566656653 2221
Q ss_pred -eeE--Eeec--CCeeEEEEecCCCEEEEEEC---CCcEEEEECC---CC------eEEEEEeCCCCCEEEEEEcCCCCE
Q 047260 626 -LCT--HITK--GGTAQVRFQPRIGQLLAAAS---DKVVSIFDIE---TD------RQTHSLQGHAELVNYICWDTNGDY 688 (784)
Q Consensus 626 -~~~--~~~~--~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~---t~------~~i~~l~~h~~~V~sl~~spdg~~ 688 (784)
... .... +.|..+.++|+|..++.... ++.|.+--+. .+ ..+.........+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 111 1111 27899999999999887773 4777776543 22 111122233568899999999998
Q ss_pred EEEEe
Q 047260 689 LASVS 693 (784)
Q Consensus 689 Lasgs 693 (784)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88776
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=0.18 Score=61.15 Aligned_cols=143 Identities=10% Similarity=0.046 Sum_probs=96.0
Q ss_pred CCeEEEEEccCCCEEEEE--eCCCeEEEEcCCCCccee----e------eccCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 047260 550 SVVTDVRFRPNSSQLATA--SVDKSVRLWDAANPNFCS----Q------AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617 (784)
Q Consensus 550 ~~It~i~fspdg~~Latg--s~Dg~I~IWdl~~~~~~~----~------~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I 617 (784)
-.|..+...+|+...++. +.+-.|..||+++-.... . +......-+.++.|+|.-...++.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566666676655444 334478899987532111 1 1112233466889999877778888899999
Q ss_pred EEEeCCCCe--eE-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEE
Q 047260 618 QYWSINPFL--CT-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG----HAELVNYICWDTNGDYLA 690 (784)
Q Consensus 618 ~iwDl~~~~--~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~----h~~~V~sl~~spdg~~La 690 (784)
++..+.... +. ..+....++++|+|.|..+++|-..|++.-|...- +....+.+ ....|.||+|...-.+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 998876322 11 13346779999999999999999999999887643 22222322 246899999998888887
Q ss_pred EEe
Q 047260 691 SVS 693 (784)
Q Consensus 691 sgs 693 (784)
+-+
T Consensus 260 vy~ 262 (1405)
T KOG3630|consen 260 VYG 262 (1405)
T ss_pred Eec
Confidence 754
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=5.6 Score=42.08 Aligned_cols=227 Identities=12% Similarity=0.050 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
-.++.. .|++..++..|.-..+.|+.+. .....+......-..++.+ |++-+.+..|+-+.|-|+.++.....
T Consensus 131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 344444 4888888886666788888653 2333444444444667775 77888888999999999988664333
Q ss_pred eccCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEE-EEecCCCEEEEEECCCcEEEEE
Q 047260 587 AYTGHSS-PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQV-RFQPRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 587 ~~~~h~~-~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v-~fsp~~~~Ll~~s~Dg~I~IwD 660 (784)
.-.-..+ .+.++..+++.. +++-. +.-+.+-|....+....+. ..+.++ .+.-.+++.+++..+.-+-+.|
T Consensus 207 i~~~n~g~g~~sv~vsdnr~--y~vvy-~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~id 283 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRA--YLVVY-DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIID 283 (370)
T ss_pred EEEEecCCceEEEEecCCee--EEEEc-ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEe
Confidence 2222223 577777776532 22222 4445566666544332222 122222 3444566777777777777777
Q ss_pred CCCCeEEE---EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260 661 IETDRQTH---SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737 (784)
Q Consensus 661 l~t~~~i~---~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg 737 (784)
+.+..... .+......-..+.. .+.++..+..+...+.|....+......+....+.++..+-+.+.+.+...++
T Consensus 284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~ 361 (370)
T COG5276 284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG 361 (370)
T ss_pred ccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCC
Confidence 76532111 11111111122222 23444444444555555544433333333333345555555555777888888
Q ss_pred eEEEEECC
Q 047260 738 SLELWNMA 745 (784)
Q Consensus 738 ~I~Iwdl~ 745 (784)
.+.||+..
T Consensus 362 gl~i~~~~ 369 (370)
T COG5276 362 GLSIIEYL 369 (370)
T ss_pred CEEEEEec
Confidence 88888753
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.98 E-value=0.044 Score=55.37 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=78.7
Q ss_pred EEEEECCCcEEEEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc-eEEEeccCCCceEE-EEE
Q 047260 647 LLAAASDKVVSIFDIETDRQTHS-LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-CIQELSSNGNQFHS-CVF 723 (784)
Q Consensus 647 Ll~~s~Dg~I~IwDl~t~~~i~~-l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~-~i~~l~~~~~~I~s-l~f 723 (784)
+.+.+.++.|.-++++..+.-.. ..-+.....-+.+ +..+++.++++.|++|...-.- ....+......|.+ +..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~--~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA--SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc--CceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 55566678888877765432111 1112222111122 2233444446688888876321 11111111122222 223
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCceEEec-ccC-CceEEEEEeCCCCEEEEE--ECCCcEEEeC
Q 047260 724 HPSYSTLLVVGGISSLELWNMAENKSMTIA-AHE-NIISALAQSPVTGMVASA--SHDSSVKLWK 784 (784)
Q Consensus 724 spdg~~L~s~s~dg~I~Iwdl~~~~~~~~~-~h~-~~V~slafspdg~~LaSg--s~DG~V~IWd 784 (784)
..++.+.++++.+|.|+.|++.-++.+... .|. .++..+..+..+++|+.+ |.|..++.|+
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 344557888999999999999999888444 555 566667777777788888 8888888885
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.42 Score=57.84 Aligned_cols=71 Identities=30% Similarity=0.464 Sum_probs=57.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEc---cCCCEEEEEeCCCeEEEEcC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR---PNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fs---pdg~~Latgs~Dg~I~IWdl 578 (784)
-.++|+|++|+.||++++.|-.+|.|.+||+.+++.++.+..|..+++.+-+. .++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 46789999999999999999999999999999999999988887766655443 45556777766665 5554
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.96 E-value=5.1 Score=48.52 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=56.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629 (784)
Q Consensus 550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~ 629 (784)
-.|..|.++++|++|+..+..| |.|-.+...-.....+.+-...|.|-.+.-+. .++.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-~~~~~------------------- 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-RFFTS------------------- 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-hhccC-------------------
Confidence 4688999999999999988866 44444432100112233333344444333222 12211
Q ss_pred eecCCeeEEEEecC---CCEEEEEECCCcEEEEECCCC
Q 047260 630 ITKGGTAQVRFQPR---IGQLLAAASDKVVSIFDIETD 664 (784)
Q Consensus 630 ~~~~~v~~v~fsp~---~~~Ll~~s~Dg~I~IwDl~t~ 664 (784)
.....+..+.|+|. +.+|++-++|++|++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11234667888886 478999999999999998754
No 420
>PHA03098 kelch-like protein; Provisional
Probab=94.96 E-value=0.92 Score=53.21 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=73.3
Q ss_pred CcEEEEEeCC-----CeEEEEeCCCCeeEEeec--CCee-EEEEecCCCEEEEEECC------CcEEEEECCCCeEEEE-
Q 047260 605 TDLFCFCDND-----NEIQYWSINPFLCTHITK--GGTA-QVRFQPRIGQLLAAASD------KVVSIFDIETDRQTHS- 669 (784)
Q Consensus 605 ~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~--~~v~-~v~fsp~~~~Ll~~s~D------g~I~IwDl~t~~~i~~- 669 (784)
..+++.|+.+ ..+..||..+..-..... .+.. .....-++..++.|+.+ ..+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 4477777654 346778876544332211 1111 11122344555555531 4588899877543221
Q ss_pred -EeCCCCCEEEEEEcCCCCEEEEEeC---------CeEEEEeCCCCceEEE--eccCCCceEEEEEecCCCEEEEEECC-
Q 047260 670 -LQGHAELVNYICWDTNGDYLASVSQ---------NLVKVWSMASGECIQE--LSSNGNQFHSCVFHPSYSTLLVVGGI- 736 (784)
Q Consensus 670 -l~~h~~~V~sl~~spdg~~Lasgsd---------d~I~IwDl~t~~~i~~--l~~~~~~I~sl~fspdg~~L~s~s~d- 736 (784)
+...... .+++ ..++.+++.|+. +.+.+||..+.+-... +.........+.+ ++..++.|+.+
T Consensus 423 ~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 423 PLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred CCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence 1111111 1222 234555555542 1388899887643321 1111111122222 55555666543
Q ss_pred ----CeEEEEECCCCceEEecccCCceEEE
Q 047260 737 ----SSLELWNMAENKSMTIAAHENIISAL 762 (784)
Q Consensus 737 ----g~I~Iwdl~~~~~~~~~~h~~~V~sl 762 (784)
..|.+||..++.-..+......+.++
T Consensus 499 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 499 EYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred CcccceeEEEeCCCCEEEecCCCcccccce
Confidence 47889998887665444433333333
No 421
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.86 E-value=9 Score=44.60 Aligned_cols=244 Identities=14% Similarity=0.158 Sum_probs=124.6
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc---eeeecCCC-CCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcc-eeeecc
Q 047260 516 SSDGKLLASSGHDRKVVLWNMDTLQ---TESTPEDH-KSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNF-CSQAYT 589 (784)
Q Consensus 516 spdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h-~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~-~~~~~~ 589 (784)
..++..++.+..+|.+....+.... .+..+ +. ....+++.+..++ .+|+.|+.-|.=.++.+..... +...+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~- 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL- 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-
Confidence 4467788889999999988776433 12222 22 4556677776554 4788887755444444433222 22222
Q ss_pred CCCCCeEEEEEcCC---CC-------cEEEEEe--CCCeEEEEeCCCCe---eEEeec-CCeeEEEEecC----CCEEEE
Q 047260 590 GHSSPIMSLDFHPK---KT-------DLFCFCD--NDNEIQYWSINPFL---CTHITK-GGTAQVRFQPR----IGQLLA 649 (784)
Q Consensus 590 ~h~~~V~sl~~sp~---~~-------~ll~sgs--~dg~I~iwDl~~~~---~~~~~~-~~v~~v~fsp~----~~~Ll~ 649 (784)
..-++|.++++.+. +. .++++++ .+|.+++..-.-.- ...... ..+..+-.-+. +.+++.
T Consensus 297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 34578998888532 12 3455544 46788887432111 111111 22443322222 345555
Q ss_pred EECCCcEEEEECC---CCeEEEEEe--C---CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC-CCceEE
Q 047260 650 AASDKVVSIFDIE---TDRQTHSLQ--G---HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN-GNQFHS 720 (784)
Q Consensus 650 ~s~Dg~I~IwDl~---t~~~i~~l~--~---h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~-~~~I~s 720 (784)
...+ .-+++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+...++....+... +..|.+
T Consensus 377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 5554 34445442 333332221 1 12233333333 66677777788999998888887776443 344555
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCceE-Eec-----ccCCceEEEEEeC
Q 047260 721 CVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA-----AHENIISALAQSP 766 (784)
Q Consensus 721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~-----~h~~~V~slafsp 766 (784)
.+... .+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 454 a~~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASIND--PQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEESS--SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEECC--CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 55543 47888888889999988877654 111 2567888888766
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.84 E-value=0.79 Score=51.08 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=61.1
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE-eCCCC-----c--eE-EEeccC----CCceEEEEEecCCCEEEEEEC
Q 047260 669 SLQGHAELVNYICWDTNGDYLASVSQNLVKVW-SMASG-----E--CI-QELSSN----GNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 669 ~l~~h~~~V~sl~~spdg~~Lasgsdd~I~Iw-Dl~t~-----~--~i-~~l~~~----~~~I~sl~fspdg~~L~s~s~ 735 (784)
.+.........+++.++| ++++ +...|..| |.... + .+ ..+... ......++|.|+|.+.++.+.
T Consensus 66 vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EeecCCCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 343334456788998988 4444 44445444 54321 1 12 223221 244678999999986665552
Q ss_pred C-------------------CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260 736 I-------------------SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 736 d-------------------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
. |.|.-++..+++...+...-.....++|+++|.++++-..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 1 34556666655544333233446789999999888765433
No 423
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.79 E-value=2.6 Score=48.14 Aligned_cols=267 Identities=11% Similarity=0.071 Sum_probs=136.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC 584 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~ 584 (784)
-..+|..+.+.-.|. |.+|+.|| +..||..+++.+....... ..|..+..+-.+ .|.+|+++| |.+.+.+.....
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 345688888888885 55577777 8888888888776654433 667766666555 477777766 777776652211
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIF 659 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw 659 (784)
.....-....|..+.-...+. +-.|+.+|..+.---+....+...+ ..+..+....+ ..+.+++.++.+++-
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~ 315 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL 315 (671)
T ss_pred ccCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence 111111233444444333443 3345545544332222221111111 22333333333 457777777777665
Q ss_pred ECCCCeEEEEEeCCCC-CEEEEEEcC---CCCEEEEEeCCeEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEE
Q 047260 660 DIETDRQTHSLQGHAE-LVNYICWDT---NGDYLASVSQNLVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 660 Dl~t~~~i~~l~~h~~-~V~sl~~sp---dg~~Lasgsdd~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s 734 (784)
+..- .....+...++ .+-.++..| +.......+.+.+.+-+-.++..+..... ....|+.+++..++ .+..++
T Consensus 316 ~a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 316 TADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred cchh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence 5431 11111211111 111111122 11111111222344444455555444322 23456666666644 466666
Q ss_pred CCCeEEEEECCC-CceEEec--ccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 735 GISSLELWNMAE-NKSMTIA--AHENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 735 ~dg~I~Iwdl~~-~~~~~~~--~h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
..+-+..|+..+ +..+... ...++|..|--.|+++ |..|+.+|.++.
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 665577777666 3333222 2456788888888888 666778887653
No 424
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.69 E-value=0.092 Score=39.94 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=30.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT 541 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~ 541 (784)
....|.+++|+|..++||.+..+|.|.||.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 4443
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.69 E-value=5.3 Score=41.89 Aligned_cols=205 Identities=13% Similarity=0.096 Sum_probs=123.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe
Q 047260 551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630 (784)
Q Consensus 551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~ 630 (784)
.-..++-.+||..-+++...+.|--.|-.+++. ...-.+.......|..-|++...|+ +...-|.-.|-++......
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEe
Confidence 345677788888888888888888888888773 3333344556677788888874443 2222455555544333221
Q ss_pred ------ecCCeeEEEEecCCCEEEEEEC---------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 047260 631 ------TKGGTAQVRFQPRIGQLLAAAS---------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q 694 (784)
Q Consensus 631 ------~~~~v~~v~fsp~~~~Ll~~s~---------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d 694 (784)
-........|.+.|..-+++.. .+.|++|+.. ....-+.||..|+|...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 1245567789999888777653 1344444433 223456788999999877655 4
Q ss_pred CeEEEEeCCCCceEEEeccC---CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCCC
Q 047260 695 NLVKVWSMASGECIQELSSN---GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVTG 769 (784)
Q Consensus 695 d~I~IwDl~t~~~i~~l~~~---~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~ 769 (784)
+.|...|..++.. ..+... ......+-.+|.+..-++....+.++.||.....-. .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 5888888777622 222211 233455566777877777777788888887665433 3333333344444444343
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=4.1 Score=48.09 Aligned_cols=195 Identities=13% Similarity=0.068 Sum_probs=97.4
Q ss_pred CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eeccCCCCCeEEEEEcCCCC
Q 047260 528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKT 605 (784)
Q Consensus 528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp~~~ 605 (784)
--.|+||++. |..+..+.-....+..+.|+.+. .|++...||+++||++-...... ..+......|..+.|..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 3458888876 55555544344478899999655 57777899999999986533111 1112222334444444444
Q ss_pred cEEEEEeCCCeEEEEeCCCCeeEEeec------CCeeEEEEecCCC---EEEEEECCCcEEEEECCCC-eEEEEEeCCCC
Q 047260 606 DLFCFCDNDNEIQYWSINPFLCTHITK------GGTAQVRFQPRIG---QLLAAASDKVVSIFDIETD-RQTHSLQGHAE 675 (784)
Q Consensus 606 ~ll~sgs~dg~I~iwDl~~~~~~~~~~------~~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~ 675 (784)
+++-...+..+.+-+..... ....+ ....|-...+.+. .++-....-...++-.+.. ...+.+.....
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eEEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 33333323333333333211 11111 1112222222211 1111110000111111111 11222332346
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCC-CceEEEEEecCC
Q 047260 676 LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNG-NQFHSCVFHPSY 727 (784)
Q Consensus 676 ~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg 727 (784)
.+..+..||+.++|+--. .|.|.+-+....+++.++.... .....++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 778889999999998877 4588888888777777776322 222355665544
No 427
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.61 E-value=9.3 Score=42.49 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=111.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc----CCCE--EEEEeC-C---CeEEEEcCCCCcceeee
Q 047260 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP----NSSQ--LATASV-D---KSVRLWDAANPNFCSQA 587 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp----dg~~--Latgs~-D---g~I~IWdl~~~~~~~~~ 587 (784)
...+|+....++-+.+||+. ++.+..+. .+.++.+.... .++. |+.++. + .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 44577777888889999998 55556553 23344443321 3432 444443 2 47999988642222222
Q ss_pred ccC-------CCCCeEEEEEc--C-CCCcEEEEEeCCCeEEEEeCC---CC----eeEEeec--CCeeEEEEecCCCEEE
Q 047260 588 YTG-------HSSPIMSLDFH--P-KKTDLFCFCDNDNEIQYWSIN---PF----LCTHITK--GGTAQVRFQPRIGQLL 648 (784)
Q Consensus 588 ~~~-------h~~~V~sl~~s--p-~~~~ll~sgs~dg~I~iwDl~---~~----~~~~~~~--~~v~~v~fsp~~~~Ll 648 (784)
+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.+. ..+..|.+......|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 221 12346777764 3 456677778889999888774 22 3445444 5677888899999999
Q ss_pred EEECCCcEEEEECCCC-----eEEEEEeC--CCCCEEEEEEc--CCC-CEEEEEeC--CeEEEEeCCC-CceEEEe
Q 047260 649 AAASDKVVSIFDIETD-----RQTHSLQG--HAELVNYICWD--TNG-DYLASVSQ--NLVKVWSMAS-GECIQEL 711 (784)
Q Consensus 649 ~~s~Dg~I~IwDl~t~-----~~i~~l~~--h~~~V~sl~~s--pdg-~~Lasgsd--d~I~IwDl~t-~~~i~~l 711 (784)
++-.+.-|.-|+.+.. ..+....+ ....|-.|++- .++ .||++++. ++..|||... ...+..|
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 9999988888888632 22322222 34567777764 344 37777764 3999999875 3444444
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.61 E-value=9.9 Score=42.81 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=67.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc-----eEEEecc--CCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 673 HAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-----CIQELSS--NGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 673 h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~-----~i~~l~~--~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
....+..+.|.+++.+++++..+.+. |....++ ...++.. ....+..+.|.+++. +++++..|.+... ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CC
Confidence 34578899999999999888776543 3333443 2233322 223588899987765 6677777766655 34
Q ss_pred CCceEEe----cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 746 ENKSMTI----AAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 746 ~~~~~~~----~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.++.-.. ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4444322 2234568899998776666654 67877665
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.59 E-value=5.8 Score=43.58 Aligned_cols=147 Identities=10% Similarity=0.154 Sum_probs=86.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEE-EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 047260 549 KSVVTDVRFRPNSSQLATASVDKSVRL-WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627 (784)
Q Consensus 549 ~~~It~i~fspdg~~Latgs~Dg~I~I-Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~ 627 (784)
...+.++.+.+++.+++++ ..|.+.. +|-. ++........-...+.++.+.+++. +++++ ..|.+++-..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578999999988766555 4565443 2222 1212222334456789999999876 44444 467665433333322
Q ss_pred EEee-------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260 628 THIT-------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ---GHAELVNYICWDTNGDYLASVSQNLV 697 (784)
Q Consensus 628 ~~~~-------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~---~h~~~V~sl~~spdg~~Lasgsdd~I 697 (784)
.... ...+..+.+.+++. +++++.+|.|.. ....++...... .-....+.+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 2211 12356778888655 566666776553 334444333332 22246788888888889998888887
Q ss_pred EEEe
Q 047260 698 KVWS 701 (784)
Q Consensus 698 ~IwD 701 (784)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 7775
No 430
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.55 E-value=10 Score=42.81 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcce---eeeccCCCCCeEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCC--------
Q 047260 560 NSSQLATASVDKSVRLWDAANPNFC---SQAYTGHSSPIMSLDFHP---KKTDLFCFCDNDNEIQYWSINPF-------- 625 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~~---~~~~~~h~~~V~sl~~sp---~~~~ll~sgs~dg~I~iwDl~~~-------- 625 (784)
+...|++||..|.++||+....... ...-..-..+|..|..-. ....+.++.-.-..+.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3468999999999999998654311 111123346777776542 22222222344566777766210
Q ss_pred ----eeE--EeecCCeeEEEEecCC-----CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260 626 ----LCT--HITKGGTAQVRFQPRI-----GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ 694 (784)
Q Consensus 626 ----~~~--~~~~~~v~~v~fsp~~-----~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd 694 (784)
+.. +.+......+++-|-| ..+.+-+.||.+.+|+-+.....+.+.. .---..+++.+.-..|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111 1122333444443332 4577778899999999876655454443 222234677777777777776
Q ss_pred C-eEEEEeC
Q 047260 695 N-LVKVWSM 702 (784)
Q Consensus 695 d-~I~IwDl 702 (784)
. .|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 5 7887765
No 431
>PHA03098 kelch-like protein; Provisional
Probab=94.51 E-value=1.3 Score=52.03 Aligned_cols=183 Identities=10% Similarity=0.079 Sum_probs=86.8
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCcce
Q 047260 518 DGKLLASSGHDR------KVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPNFC 584 (784)
Q Consensus 518 dg~~Lasgs~Dg------~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~~~ 584 (784)
++.+++.||.++ .+..||..+.+....- .........+.+ ++.+++.|+.+ ..+.+||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776542 4778888765543221 111112222222 67777888765 35778888775532
Q ss_pred eeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEeecCC--e-eEEEEecCCCEEEEEECC--
Q 047260 585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCTHITKGG--T-AQVRFQPRIGQLLAAASD-- 653 (784)
Q Consensus 585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~~~~~~~--v-~~v~fsp~~~~Ll~~s~D-- 653 (784)
...-..+...-.+++.. +..+++.|+.+ ..+..||+.+.+-......+ . ...+...++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 21111111111122222 33466666632 35788888765433322111 1 111222344455555532
Q ss_pred ------CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeC------CeEEEEeCCCCc
Q 047260 654 ------KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQ------NLVKVWSMASGE 706 (784)
Q Consensus 654 ------g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsd------d~I~IwDl~t~~ 706 (784)
..+.+||..+.+-... +.........+.+ ++++++.|+. +.|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899887643221 1111111112222 5666666652 267778776653
No 432
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=1.2 Score=44.64 Aligned_cols=174 Identities=12% Similarity=0.131 Sum_probs=101.3
Q ss_pred CCCEEEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeE
Q 047260 560 NSSQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQ 637 (784)
Q Consensus 560 dg~~Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~ 637 (784)
++.++.+.+. ...|++||+++++........ ...+..=-...-+..+....-.+|.-.++|.++.+++..+.-.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4566666554 346999999987744332222 1122211111224445556667899999999998888766533333
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe----C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEe
Q 047260 638 VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ----G-HAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQEL 711 (784)
Q Consensus 638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~----~-h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l 711 (784)
-....++..|+.+....++..-|.++.....++. + .-..++.+.|- +|.+.+-.- .+.|...|..+|+.+..+
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 3344566667777777788888877654443332 1 11233344442 455554433 346667777777766554
Q ss_pred c------------cCCCceEEEEEecCCCEEEEEEC
Q 047260 712 S------------SNGNQFHSCVFHPSYSTLLVVGG 735 (784)
Q Consensus 712 ~------------~~~~~I~sl~fspdg~~L~s~s~ 735 (784)
. .+.+..+.+++.|+...++..+.
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 3 23345688899998865555443
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.48 E-value=1.2 Score=52.55 Aligned_cols=125 Identities=12% Similarity=0.158 Sum_probs=81.1
Q ss_pred cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc--CCCEEEEEeCCC
Q 047260 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP--NSSQLATASVDK 571 (784)
Q Consensus 495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp--dg~~Latgs~Dg 571 (784)
..+....++..--..+..+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.. ++..+++.+...
T Consensus 17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 3445555565555666667666666655555555679999999876544332 4578899999975 888999999999
Q ss_pred eEEEEcCC-----CCcc---eee--eccCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 047260 572 SVRLWDAA-----NPNF---CSQ--AYTGHS-SPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622 (784)
Q Consensus 572 ~I~IWdl~-----~~~~---~~~--~~~~h~-~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl 622 (784)
.|.+|.-- +... .++ .+..|+ .+|.+..|.++|. +++++ ++.+.|+|-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence 99998532 1110 111 122333 5788999998885 33333 566777764
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.48 E-value=3.2 Score=50.20 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=58.1
Q ss_pred eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------Cce--e-eec--------CCCCCCeEEEE
Q 047260 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT----------LQT--E-STP--------EDHKSVVTDVR 556 (784)
Q Consensus 498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t----------~~~--~-~~l--------~~h~~~It~i~ 556 (784)
..+.....-.-.|..|.++++|++||..|..|. .|-.+.. ++. . +++ ..+...|..+.
T Consensus 75 q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 75 QKLLPSNPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR 153 (717)
T ss_pred ceeecCCCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE
Confidence 333333334457999999999999999998774 4433321 111 1 111 13456799999
Q ss_pred EccC---CCEEEEEeCCCeEEEEcCCCCcc
Q 047260 557 FRPN---SSQLATASVDKSVRLWDAANPNF 583 (784)
Q Consensus 557 fspd---g~~Latgs~Dg~I~IWdl~~~~~ 583 (784)
|+|. +..|++-..|+++|+||+.....
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 9994 57888989999999999976543
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=4 Score=45.47 Aligned_cols=117 Identities=10% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260 506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP 581 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~ 581 (784)
..++|.++.||+|.+.||+--.|.+|.+++....+. ..+.+..+..|....|+.+ .-+|..+..| +-+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 567899999999999999999999999999843222 2223344566899999865 5566665444 778877766
Q ss_pred cceeeeccCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeCCC
Q 047260 582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-NDNEIQYWSINP 624 (784)
Q Consensus 582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-~dg~I~iwDl~~ 624 (784)
+...+....|...|.-..|.++..-++.+.+ ..+.+.-+.+++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 6667777788888999999998775555444 344444444443
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.29 E-value=1.1 Score=52.84 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=73.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-cCCCceEEEEEe--cCCCEEEEEECCCeEEEEECC----
Q 047260 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-SNGNQFHSCVFH--PSYSTLLVVGGISSLELWNMA---- 745 (784)
Q Consensus 674 ~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-~~~~~I~sl~fs--pdg~~L~s~s~dg~I~Iwdl~---- 745 (784)
......+.-+.-++..++.+++ .+.|||.+.+....+-. .....|.++.|. |++..|++.|-...|.+|.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344445555556665555555 99999999887544333 456789999885 788999999999999998532
Q ss_pred -CC-------ceEEecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 746 -EN-------KSMTIAAHE-NIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 746 -~~-------~~~~~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.. +.+.+..|+ .+|.+.+|.++|.+++.++ +.+.|+|
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 112344454 6899999999987666553 3465554
No 437
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.25 E-value=5.3 Score=48.74 Aligned_cols=171 Identities=11% Similarity=0.001 Sum_probs=85.4
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEeecC--Cee-------------EEEEec--CCCEEEEEEC----------CCcEEEE
Q 047260 607 LFCFCDNDNEIQYWSINPFLCTHITKG--GTA-------------QVRFQP--RIGQLLAAAS----------DKVVSIF 659 (784)
Q Consensus 607 ll~sgs~dg~I~iwDl~~~~~~~~~~~--~v~-------------~v~fsp--~~~~Ll~~s~----------Dg~I~Iw 659 (784)
.++.++.|+.|.-.|.++++....+.. .+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 566677899999999998877754431 110 011111 1356666643 5889999
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS 737 (784)
Q Consensus 660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg 737 (784)
|+++++.+..+..-....... .+.+.....++.+ ....+|.+.+....-. +...+ .+....+........+
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSS 414 (764)
T ss_pred ECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccc
Confidence 999999998876321111111 1233433323322 4455565555432211 11100 0100000000111235
Q ss_pred eEEEEECCCCceE-Eec--ccCC-------ceEEEEEeC-CCC---EEEEEECCCcEEEeC
Q 047260 738 SLELWNMAENKSM-TIA--AHEN-------IISALAQSP-VTG---MVASASHDSSVKLWK 784 (784)
Q Consensus 738 ~I~Iwdl~~~~~~-~~~--~h~~-------~V~slafsp-dg~---~LaSgs~DG~V~IWd 784 (784)
.|.-.|.++++.. .+. .|+- ...-+.+.. +|+ .|+.++.+|.+.+.|
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 6777788888776 222 2211 111122222 443 788888888888765
No 438
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.18 E-value=10 Score=41.11 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcc-----------
Q 047260 518 DGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNF----------- 583 (784)
Q Consensus 518 dg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~----------- 583 (784)
++++|+.|+.+| |.+.++.. .+....+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 55566654 3344433 567899999999777666654 334499999843210
Q ss_pred ---eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEe------e-cCCeeEEEEecC--CCEE
Q 047260 584 ---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTHI------T-KGGTAQVRFQPR--IGQL 647 (784)
Q Consensus 584 ---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~~------~-~~~v~~v~fsp~--~~~L 647 (784)
.......|......+.+......+++++.....|.++.... ...... . ..++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 00112234333333343332223334444455666654321 111111 0 112222222332 4567
Q ss_pred EEEECCCcEEEEECCC--CeEE-----EEEeCCC-CCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCce--EEEeccCCCc
Q 047260 648 LAAASDKVVSIFDIET--DRQT-----HSLQGHA-ELVNYICWDTNGDYLASVSQNLVKVWSMASGEC--IQELSSNGNQ 717 (784)
Q Consensus 648 l~~s~Dg~I~IwDl~t--~~~i-----~~l~~h~-~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~--i~~l~~~~~~ 717 (784)
++|+..+...++++.. .... ....... .++..+. -+++.+|+ +-++...+.|....+. ...+.- ...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l~w-~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLL-CYDEFGVFVNLYGKRRSRNPILHW-EFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEE-EECcEEEEEeCCCCccccceEEEc-CCc
Confidence 7776643444444432 1000 0011111 2333333 34455554 4455455555443111 112221 234
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEEECCCCceEEeccc
Q 047260 718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAH 755 (784)
Q Consensus 718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h 755 (784)
..++++.. ++|++...+ .|.|+++.+++.+....+
T Consensus 246 p~~~~~~~--pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 46667763 577777654 599999999987644433
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.08 E-value=10 Score=40.94 Aligned_cols=222 Identities=11% Similarity=0.110 Sum_probs=101.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 047260 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGH----SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622 (784)
Q Consensus 548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h----~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl 622 (784)
-...+.+|.|..+..-+++| ..+.| +...++.. -....... .-...+|.|..+ ..+++|. .+.| +...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g~l-l~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PGLL-LHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TTEE-EEES
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-CceE-EEec
Confidence 34588999999555555555 45543 33333221 11111111 123667777643 3555554 4433 3333
Q ss_pred CCCe---eEEe---ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260 623 NPFL---CTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT-HSLQGHAELVNYICWDTNGDYLASVSQN 695 (784)
Q Consensus 623 ~~~~---~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i-~~l~~h~~~V~sl~~spdg~~Lasgsdd 695 (784)
+.+. .+.. ..+....+....++ ...+++..|.|+.-. ..++.- .....-.+.+..+.-+++|++++++..+
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 3222 2211 12333334433333 344444445443221 122222 2233455778888899999999999988
Q ss_pred -eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC-CCCceEE---ec--ccCCceEEEEEeCCC
Q 047260 696 -LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM-AENKSMT---IA--AHENIISALAQSPVT 768 (784)
Q Consensus 696 -~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl-~~~~~~~---~~--~h~~~V~slafspdg 768 (784)
...-||--...-...-......|..+.|.|++...+ .+..|.|++=+. ...+... .. ...-.+..++|.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 666787653322222233457899999999977544 557788887762 2222211 11 122238899999988
Q ss_pred CEEEEEECCCcE
Q 047260 769 GMVASASHDSSV 780 (784)
Q Consensus 769 ~~LaSgs~DG~V 780 (784)
...++|+. |.+
T Consensus 245 ~~wa~gg~-G~l 255 (302)
T PF14870_consen 245 EIWAVGGS-GTL 255 (302)
T ss_dssp -EEEEEST-T-E
T ss_pred CEEEEeCC-ccE
Confidence 77776654 444
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.07 E-value=0.077 Score=62.59 Aligned_cols=118 Identities=20% Similarity=0.343 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEE-----------EccCCCEEEEEeCCCeEEEEcC
Q 047260 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVR-----------FRPNSSQLATASVDKSVRLWDA 578 (784)
Q Consensus 510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~-----------fspdg~~Latgs~Dg~I~IWdl 578 (784)
|.-|-|-++.-++..+-.++.|++.++++... ..+.+|...+++++ .+|||+.|+.++.||.++.|-+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33333444667888888899999888775433 45566877666655 4789999999999999998876
Q ss_pred CCCc----ceeeeccCCC-CCeEEEEEcCCC---------CcEEEEEeCCCeEEEEeCCCCeeE
Q 047260 579 ANPN----FCSQAYTGHS-SPIMSLDFHPKK---------TDLFCFCDNDNEIQYWSINPFLCT 628 (784)
Q Consensus 579 ~~~~----~~~~~~~~h~-~~V~sl~~sp~~---------~~ll~sgs~dg~I~iwDl~~~~~~ 628 (784)
.-.. .|....+.|+ .+-.|..|+... ..+|-+.+.+..+++|.....+|.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4211 2444555666 333333343321 112333445678999988887776
No 441
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.98 E-value=2.9 Score=48.05 Aligned_cols=144 Identities=15% Similarity=0.321 Sum_probs=89.5
Q ss_pred CCeEEEEEccCCCEEE-EEe--CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeC
Q 047260 550 SVVTDVRFRPNSSQLA-TAS--VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK----KTDLFCFCDNDNEIQYWSI 622 (784)
Q Consensus 550 ~~It~i~fspdg~~La-tgs--~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~----~~~ll~sgs~dg~I~iwDl 622 (784)
.+|..++|. ||+.++ |.- .+|.+++=|-. ..|.-..|..+.|.|- ...+++ ......|.||.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~--------viGqFEhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK--------VIGQFEHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQL 89 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc--------EeeccceeeeeeecCcccCCCCceEE-EeccceEEEEEe
Confidence 478889997 565444 332 23444433321 1233456999999985 334554 445889999988
Q ss_pred CC-----CeeEE----eecC----CeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCC
Q 047260 623 NP-----FLCTH----ITKG----GTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGD 687 (784)
Q Consensus 623 ~~-----~~~~~----~~~~----~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spdg~ 687 (784)
.. .+.+. .+.. -...+.|+|....|.+-.....=.+++++.. +....+ ...+.|.|.||.+||.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCC
Confidence 52 11111 1111 1234679999888877776555556666543 222233 3678899999999999
Q ss_pred EEEEEeCC--eEEEEeCCC
Q 047260 688 YLASVSQN--LVKVWSMAS 704 (784)
Q Consensus 688 ~Lasgsdd--~I~IwDl~t 704 (784)
.|+++-.. .-+|||-..
T Consensus 169 RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEeCCeEEEEEecCch
Confidence 88887655 778998643
No 442
>PLN02153 epithiospecifier protein
Probab=93.89 E-value=8.5 Score=42.25 Aligned_cols=83 Identities=7% Similarity=-0.017 Sum_probs=39.4
Q ss_pred eEEEEeCCCCceEEEec---cCCCceEEEEEecCCCEEEEEECC--------------CeEEEEECCCCceEEecc----
Q 047260 696 LVKVWSMASGECIQELS---SNGNQFHSCVFHPSYSTLLVVGGI--------------SSLELWNMAENKSMTIAA---- 754 (784)
Q Consensus 696 ~I~IwDl~t~~~i~~l~---~~~~~I~sl~fspdg~~L~s~s~d--------------g~I~Iwdl~~~~~~~~~~---- 754 (784)
.|.+||+.+.+-...-. .........+...++..++.|+.. ..|..||+.+..-..+..
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~ 297 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEP 297 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCC
Confidence 68889988764332211 011111111222345566666641 257888887765443321
Q ss_pred --cCCc--eEEEEEeCCCCEEEEEECCC
Q 047260 755 --HENI--ISALAQSPVTGMVASASHDS 778 (784)
Q Consensus 755 --h~~~--V~slafspdg~~LaSgs~DG 778 (784)
.... ..++.+.-++++++.|+.++
T Consensus 298 ~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 298 AMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred CCCCccccccccccCCcceEEEEcCcCC
Confidence 1111 12333344456777776643
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=0.69 Score=56.37 Aligned_cols=141 Identities=9% Similarity=0.021 Sum_probs=85.5
Q ss_pred CeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEE-----EEe------CCCCCEEEEEEcCCCC--EEEEEeCCeEE
Q 047260 634 GTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTH-----SLQ------GHAELVNYICWDTNGD--YLASVSQNLVK 698 (784)
Q Consensus 634 ~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~-----~l~------~h~~~V~sl~~spdg~--~Lasgsdd~I~ 698 (784)
.+..+...+|+...++... +-.|..||+++-..-. -+. ....-..++.|.|.-. .+++-.+..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444445555554444433 3478889987532111 111 1223456778887543 33444455788
Q ss_pred EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEE
Q 047260 699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASA 774 (784)
Q Consensus 699 IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSg 774 (784)
|..+.--....+--......++++|+|.|+.+++|-..|++.-|...-.....+. .....|.+|+|-....++|+-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 8776543322222233466899999999999999999999998876554333222 125789999999877766654
No 444
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.71 E-value=0.31 Score=37.06 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAA 579 (784)
Q Consensus 549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~ 579 (784)
...|.+++|+|..++||.++.||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 445
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=3.2 Score=52.09 Aligned_cols=228 Identities=13% Similarity=0.065 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS 585 (784)
Q Consensus 507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~ 585 (784)
......++|+|.-.++|.+..+|.|++|-..--+.......-. ..+..+.|-.....+.....+..+.+|.......+
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~- 113 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV- 113 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee-
Confidence 3456778999999999999999999999866433332221111 12233333222223344445566677766543311
Q ss_pred eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEE-EEecCCCEEEEEECCCcEEEEE
Q 047260 586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQV-RFQPRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v-~fsp~~~~Ll~~s~Dg~I~IwD 660 (784)
.+...+++.... ..-.++.+ ..+.+++||......... ........ ...+..-.+..--.+-.-.++-
T Consensus 114 ----~~~~~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 114 ----FLKQEITSFVTD--PPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred ----ecCCcceeccCC--CCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Confidence 112233333322 22122334 788888888753211111 11110000 0000000000000010111111
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260 661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLE 740 (784)
Q Consensus 661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~ 740 (784)
+.... ..+..+..++.+..+.....++.....+.+.+|+.........+..... .+..++..++++..||.+.
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~ 259 (993)
T KOG1983|consen 187 LPDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYA 259 (993)
T ss_pred ccccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEE
Confidence 11001 1222355566666666666666666667777777665444434332222 2278889999999999999
Q ss_pred EEECCCCce
Q 047260 741 LWNMAENKS 749 (784)
Q Consensus 741 Iwdl~~~~~ 749 (784)
+||...++.
T Consensus 260 fWd~s~g~~ 268 (993)
T KOG1983|consen 260 FWDVSSGKL 268 (993)
T ss_pred eeecCCCce
Confidence 999998744
No 446
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.57 E-value=16 Score=39.20 Aligned_cols=159 Identities=12% Similarity=0.126 Sum_probs=88.0
Q ss_pred eEEEEeCCCCeeEEeec---------CCeeEEEEecCC-----CEEEEEEC-CCcEEEEECCCCeEEEEEeCC-------
Q 047260 616 EIQYWSINPFLCTHITK---------GGTAQVRFQPRI-----GQLLAAAS-DKVVSIFDIETDRQTHSLQGH------- 673 (784)
Q Consensus 616 ~I~iwDl~~~~~~~~~~---------~~v~~v~fsp~~-----~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h------- 673 (784)
.|.+||+.+.+.++.+. .....+++.... .+++.+.. .+.|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 34455555554443332 345667776632 35555555 478999999998876655421
Q ss_pred ------------CCCEEEEEEcC---CCCEEEEEeCCeEEEEeCCC-----C---------ceEEEeccCCCceEEEEEe
Q 047260 674 ------------AELVNYICWDT---NGDYLASVSQNLVKVWSMAS-----G---------ECIQELSSNGNQFHSCVFH 724 (784)
Q Consensus 674 ------------~~~V~sl~~sp---dg~~Lasgsdd~I~IwDl~t-----~---------~~i~~l~~~~~~I~sl~fs 724 (784)
...+..++.+| +++.|.-..-...++|.+.+ . +.+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 11255556654 56666655533333343321 1 1122222222456778899
Q ss_pred cCCCEEEEEECCCeEEEEECCCC----ceEEec--cc-CCceEEEEEeC--CCCEEEEE
Q 047260 725 PSYSTLLVVGGISSLELWNMAEN----KSMTIA--AH-ENIISALAQSP--VTGMVASA 774 (784)
Q Consensus 725 pdg~~L~s~s~dg~I~Iwdl~~~----~~~~~~--~h-~~~V~slafsp--dg~~LaSg 774 (784)
++|..+++--..+.|..|+..+. ....+. .. -..+.++.+.+ ++.+.+.+
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99887888888889999998872 211221 22 34678999998 77766654
No 447
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.50 E-value=28 Score=41.37 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=68.2
Q ss_pred eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEeC-CCCCEEEEEEcC------CCCEEEEEeC---C--
Q 047260 630 ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQG-HAELVNYICWDT------NGDYLASVSQ---N-- 695 (784)
Q Consensus 630 ~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~-h~~~V~sl~~sp------dg~~Lasgsd---d-- 695 (784)
..+..+..+.|..++..+++...+|.|.+||...+. .+..+.. +...+.--+|-+ ...++++.++ +
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 456788899999999999999999999999993322 1112221 222111112222 2334444332 2
Q ss_pred eEEEEeCC-CCceEEEec---cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 696 LVKVWSMA-SGECIQELS---SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 696 ~I~IwDl~-t~~~i~~l~---~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
..+++.+. ....+.++. .+......+.|+-....|+.- .+++|.+|++...+..
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 78889882 223333442 222333444444433344444 6779999999776544
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=92.39 E-value=5.8 Score=45.94 Aligned_cols=141 Identities=7% Similarity=0.006 Sum_probs=66.4
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeCC--CeEEEEcCCCCcceee-e
Q 047260 518 DGKLLASSGHDR-----KVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASVD--KSVRLWDAANPNFCSQ-A 587 (784)
Q Consensus 518 dg~~Lasgs~Dg-----~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~D--g~I~IWdl~~~~~~~~-~ 587 (784)
++.++++||.++ .+..||..+.+-... +.........+. -++.+.+.|+.+ ..+..||..++..... .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355667776543 477788776543222 211111122222 367777777754 3577888766543211 1
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260 588 YTGHSSPIMSLDFHPKKTDLFCFCDNDN---EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIE 662 (784)
Q Consensus 588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg---~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~ 662 (784)
+.........+.+ +..+++.|+.++ .+..||.++..-..... .+........-++.|++.+ |.+.+||.+
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCC
Confidence 1111111112222 234777776543 46778877644433221 1111111111234444444 457788887
Q ss_pred CCe
Q 047260 663 TDR 665 (784)
Q Consensus 663 t~~ 665 (784)
+.+
T Consensus 424 ~~~ 426 (480)
T PHA02790 424 SNT 426 (480)
T ss_pred CCc
Confidence 653
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.25 E-value=3.8 Score=38.40 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=68.4
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCC--------eEEEEEeCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEeCCCC
Q 047260 639 RFQPRIGQLLAAASDKVVSIFDIETD--------RQTHSLQGHAELVNYICWDT-----NGDYLASVSQNLVKVWSMASG 705 (784)
Q Consensus 639 ~fsp~~~~Ll~~s~Dg~I~IwDl~t~--------~~i~~l~~h~~~V~sl~~sp-----dg~~Lasgsdd~I~IwDl~t~ 705 (784)
+|......|++++..|.|.|++.... ..+..+. -...|++++-.+ +...|+.|+...|.+||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 34444455677777777777765432 2233333 455677765433 456899999999999999877
Q ss_pred ceEEEeccCCCceEEEEEe---cCCCEEEEEECCCeEEEEECCCCceE
Q 047260 706 ECIQELSSNGNQFHSCVFH---PSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 706 ~~i~~l~~~~~~I~sl~fs---pdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
..+.--.. ...|+++.+- ....-++..+.+..|.-||....+.+
T Consensus 84 ~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred chhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 65443322 2556666653 22234677777778888887766654
No 450
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.12 E-value=26 Score=40.82 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=112.1
Q ss_pred ccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCC-CCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCeeEEeec-
Q 047260 558 RPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGH-SSPIMSLDFHPKKTDLFCFCDN--DNEIQYWSINPFLCTHITK- 632 (784)
Q Consensus 558 spdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h-~~~V~sl~~sp~~~~ll~sgs~--dg~I~iwDl~~~~~~~~~~- 632 (784)
..++..++.+..+|.+....+..... ......+. .....++++..++..+++.|+. |+.+..|.....+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677899999999998887765331 12222232 5566778887776445666654 5566666655556665555
Q ss_pred -CCeeEEEEecC----CC------EEEEEEC---CCcEEEEECCCCeE--EEEEeCCC--CCEEEEEEcC-CCCEEEEEe
Q 047260 633 -GGTAQVRFQPR----IG------QLLAAAS---DKVVSIFDIETDRQ--THSLQGHA--ELVNYICWDT-NGDYLASVS 693 (784)
Q Consensus 633 -~~v~~v~fsp~----~~------~Ll~~s~---Dg~I~IwDl~t~~~--i~~l~~h~--~~V~sl~~sp-dg~~Lasgs 693 (784)
+++.++++... .. .+++++. +|.|+++.---+-. ........ ..+..+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 78888887532 22 6666664 68888874322111 11122122 2333333222 256888877
Q ss_pred CCeEEEEeCC---CCceEEEec-----cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-e-cccCCceEEEE
Q 047260 694 QNLVKVWSMA---SGECIQELS-----SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-I-AAHENIISALA 763 (784)
Q Consensus 694 dd~I~IwDl~---t~~~i~~l~-----~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~-~~h~~~V~sla 763 (784)
.+.-+|+.+. ..+.+.++. .....+.+..+. +..++=.+.. .|++.+....+... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 7766666663 344443331 112223222222 4455555554 48888877766652 2 22344455555
Q ss_pred EeCCCCEEEEEECCCcEEEe
Q 047260 764 QSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 764 fspdg~~LaSgs~DG~V~IW 783 (784)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 44 3455555556666554
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=91.92 E-value=8.7 Score=44.49 Aligned_cols=139 Identities=6% Similarity=-0.036 Sum_probs=65.5
Q ss_pred CcEEEEEeCC--CeEEEEeCCCCeeEEe--ecCCeeE-EEEecCCCEEEEEECC---CcEEEEECCCCeEEEE--EeCCC
Q 047260 605 TDLFCFCDND--NEIQYWSINPFLCTHI--TKGGTAQ-VRFQPRIGQLLAAASD---KVVSIFDIETDRQTHS--LQGHA 674 (784)
Q Consensus 605 ~~ll~sgs~d--g~I~iwDl~~~~~~~~--~~~~v~~-v~fsp~~~~Ll~~s~D---g~I~IwDl~t~~~i~~--l~~h~ 674 (784)
..+++.|+.+ ..+..||.....-... ...+... ....-++...++|+.+ ..+..||.++.+-... +....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4466777643 3577788765433222 1112211 1223345555666654 3577888876542221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE--EEeccCCCceEEEEEecCCCEEEEEECC-----CeEEEEECCCC
Q 047260 675 ELVNYICWDTNGDYLASVSQNLVKVWSMASGECI--QELSSNGNQFHSCVFHPSYSTLLVVGGI-----SSLELWNMAEN 747 (784)
Q Consensus 675 ~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i--~~l~~~~~~I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~ 747 (784)
... +++ .-++++.+.|+ .+.+||..+.+-. ..+....... +++ .-+++..++||.+ ..|.+||..++
T Consensus 399 ~~~-~~~-~~~~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 399 YKS-CAL-VFGRRLFLVGR--NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ccc-eEE-EECCEEEEECC--ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 111 121 23566666553 4677888765432 2222111222 222 2355555666543 35777777665
Q ss_pred ce
Q 047260 748 KS 749 (784)
Q Consensus 748 ~~ 749 (784)
+-
T Consensus 473 ~W 474 (480)
T PHA02790 473 SW 474 (480)
T ss_pred eE
Confidence 43
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.66 E-value=11 Score=38.29 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=62.8
Q ss_pred CEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---C---eEEEE---cCC-CC-cceee
Q 047260 520 KLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---K---SVRLW---DAA-NP-NFCSQ 586 (784)
Q Consensus 520 ~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g---~I~IW---dl~-~~-~~~~~ 586 (784)
+.|+.+...++|.+|++. .......+. .-+.|..+.++..|+||+|--.+ . .+|+| +.. .. .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999988 445555554 44889999999999999996432 2 56664 322 11 11111
Q ss_pred eccC---------------------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260 587 AYTG---------------------HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623 (784)
Q Consensus 587 ~~~~---------------------h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~ 623 (784)
...| -...+.+++..|...++++.+ ++.+.+|.+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 1112 134567777777666676654 6678888664
No 453
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.64 E-value=21 Score=42.44 Aligned_cols=163 Identities=12% Similarity=0.147 Sum_probs=93.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eeccCCCCCeEEEEEcC------CCCcEEEEEe-CC--Ce
Q 047260 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHP------KKTDLFCFCD-ND--NE 616 (784)
Q Consensus 548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp------~~~~ll~sgs-~d--g~ 616 (784)
-.+.|..|.|.++++.+++...+|.|.+||........ ..-..+...+.--+|-+ ....+++.+. .+ -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36789999999999999999999999999993322111 11111222111112222 2334444454 22 35
Q ss_pred EEEEeC--CCCeeEEee----c-CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC-----C-CCEEEEEEc
Q 047260 617 IQYWSI--NPFLCTHIT----K-GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH-----A-ELVNYICWD 683 (784)
Q Consensus 617 I~iwDl--~~~~~~~~~----~-~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h-----~-~~V~sl~~s 683 (784)
.+++.+ +...+.... . .......|.-..+.|+.- .++.|.+|++...+..+++.-. . ..+.++. .
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 677777 322222221 1 122233333334444444 7789999999888766665421 1 2333443 2
Q ss_pred CCCCEEEEEeCCeEEEEeCCCCceEEEec
Q 047260 684 TNGDYLASVSQNLVKVWSMASGECIQELS 712 (784)
Q Consensus 684 pdg~~Lasgsdd~I~IwDl~t~~~i~~l~ 712 (784)
|..+.+..+.++.|++.|+.-...+.++.
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 45556666778899999998776666554
No 454
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=91.23 E-value=0.072 Score=64.00 Aligned_cols=70 Identities=19% Similarity=0.098 Sum_probs=40.3
Q ss_pred cccCCCCchhhhhhhhcccccccccccccccccccccCCCCCCccccccccccccccCCcCCCCCCCCcccCCCCCCC
Q 047260 181 AQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIG 258 (784)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (784)
-|.++-+.+..-++-+.-.-||.-|-+--|+...|.-++|-.+.--||.++ -| .--|-+.+-|||||-+-
T Consensus 1754 n~s~s~n~~~~e~~q~~~~sql~i~ss~p~~~ssp~~a~~iss~~v~qps~-----~~---~~~g~ss~~~~~~~p~s 1823 (2131)
T KOG4369|consen 1754 NNSNSKNDSSNEWGQNEFISQLLINSSLPNATSSPQGASTISSAPVQQPST-----SS---VTTGLSSLELKGWMPAS 1823 (2131)
T ss_pred cCCCCCchhhhhhhccchhhhheeeccCCCCCCCCCCCccccccccCCCcc-----cc---ccccccchhhcCCCCcc
Confidence 355566666544443333334434445556555555555555555566655 22 22578999999999873
No 455
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.89 E-value=24 Score=37.25 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=147.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY 588 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~ 588 (784)
.-..++-.|||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.+.....+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 35667888999988888888888888999998877766666777788888988766664333 45555655544222222
Q ss_pred c--CCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260 589 T--GHSSPIMSLDFHPKKTDLFCFCDND---------NEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVS 657 (784)
Q Consensus 589 ~--~h~~~V~sl~~sp~~~~ll~sgs~d---------g~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~ 657 (784)
. .-........|.+.|. +.+++... +.|++|+.- .......|+..|+|...++...++.|-
T Consensus 142 p~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaP-------qG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 142 PLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAP-------QGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccC-------CCCCCcceEECCCCcEEEEeccccceE
Confidence 1 2234567788888876 55555421 233333322 124457788999999888888888888
Q ss_pred EEECCCCeEEEEE--eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EEEeccCCCceEEEEEecCCCEEEEE
Q 047260 658 IFDIETDRQTHSL--QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQELSSNGNQFHSCVFHPSYSTLLVV 733 (784)
Q Consensus 658 IwDl~t~~~i~~l--~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~~l~~~~~~I~sl~fspdg~~L~s~ 733 (784)
..|...+.....- .........+--+|-|+.-++.... .+.-||.....- ...+.+....-.++.+...++..++-
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeec
Confidence 8887766222111 1112233445556777766664433 777777655431 22344444555677777777655555
Q ss_pred ECCCeEEEEECCCCceEEec
Q 047260 734 GGISSLELWNMAENKSMTIA 753 (784)
Q Consensus 734 s~dg~I~Iwdl~~~~~~~~~ 753 (784)
...|.|.-||.++.....+.
T Consensus 294 a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 294 ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccCceeecCcccceEEEec
Confidence 55677888887776554443
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.83 E-value=27 Score=37.93 Aligned_cols=100 Identities=7% Similarity=0.071 Sum_probs=47.1
Q ss_pred CcEEEEEeCC-----CeEEEEeCCCCee---EEee---cCCe--eEEEEecCCCEEEEEEC-----CCcEEEEECCCCeE
Q 047260 605 TDLFCFCDND-----NEIQYWSINPFLC---THIT---KGGT--AQVRFQPRIGQLLAAAS-----DKVVSIFDIETDRQ 666 (784)
Q Consensus 605 ~~ll~sgs~d-----g~I~iwDl~~~~~---~~~~---~~~v--~~v~fsp~~~~Ll~~s~-----Dg~I~IwDl~t~~~ 666 (784)
..+++.|+.+ ..+..+|+.+... .... ..+. .+++. -++..++.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 3466666654 3566677765442 1111 1111 11222 23445555553 24688899876542
Q ss_pred E--EEEeCCCCCEEEEEEcCCCCEEEEEeCC-----eEEEEeCCCCc
Q 047260 667 T--HSLQGHAELVNYICWDTNGDYLASVSQN-----LVKVWSMASGE 706 (784)
Q Consensus 667 i--~~l~~h~~~V~sl~~spdg~~Lasgsdd-----~I~IwDl~t~~ 706 (784)
. ..+.. .......+..-++++.+.|+.+ .+.+||+.+.+
T Consensus 152 ~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 2 11211 1111222223355666665532 35688888754
No 457
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.73 E-value=51 Score=40.81 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=61.9
Q ss_pred EEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEEEECCCeEEE--EECCCCceEEecc--
Q 047260 681 CWDTNGDYLASVSQNLVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLVVGGISSLEL--WNMAENKSMTIAA-- 754 (784)
Q Consensus 681 ~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg~I~I--wdl~~~~~~~~~~-- 754 (784)
+..|...++.+|-.+.+++||+...++++..... ...|..+.+. +..|++|..-..|.+ |+-.++..+.+..
T Consensus 940 Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~ 1017 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDP 1017 (1205)
T ss_pred EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCC
Confidence 4557677888888889999999887766554432 3445555553 447888877665554 5555555554433
Q ss_pred cCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260 755 HENIISALAQSPVTGMVASASHDSSVKL 782 (784)
Q Consensus 755 h~~~V~slafspdg~~LaSgs~DG~V~I 782 (784)
-...|+++.+- |...+|.+..-|.+.+
T Consensus 1018 ~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1018 VPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred ccceeeEEEEe-cCCceeeccccCcEEE
Confidence 23446666554 4446776766666654
No 458
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.54 E-value=9.2 Score=45.38 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=63.1
Q ss_pred EEEEecCCCEEEEEECCC-----cEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE
Q 047260 637 QVRFQPRIGQLLAAASDK-----VVSIFDIET---DRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECI 708 (784)
Q Consensus 637 ~v~fsp~~~~Ll~~s~Dg-----~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i 708 (784)
.+.|-|.|..+++-..|| .|.+|.... |+.-.. .+....+..++|+-....++.+..+.|.+|-..+....
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence 478999999999887554 244443221 111001 12344567788887777788887889999998876544
Q ss_pred EEeccCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260 709 QELSSNGNQFHSCVFHPSYSTLLVVGGISSLE 740 (784)
Q Consensus 709 ~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~ 740 (784)
......-..+.-+.|+|....-+.-.+.+.|.
T Consensus 330 LK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~ 361 (1243)
T COG5290 330 LKVERQIPGISYVKWHPEEKNTLLFRDGERIL 361 (1243)
T ss_pred EEEeecCCCcceeeeccccCcEEEEecCCeEE
Confidence 33333334566778888766544444444443
No 459
>PLN02153 epithiospecifier protein
Probab=90.32 E-value=32 Score=37.74 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceeeecCC---CCC---CeEEEEEccCCCEEEEEeCC-----CeEEEEcCC
Q 047260 518 DGKLLASSGHD-------RKVVLWNMDTLQTESTPED---HKS---VVTDVRFRPNSSQLATASVD-----KSVRLWDAA 579 (784)
Q Consensus 518 dg~~Lasgs~D-------g~I~IWd~~t~~~~~~l~~---h~~---~It~i~fspdg~~Latgs~D-----g~I~IWdl~ 579 (784)
++++++.|+.+ ..+.+||+.+.+-...... ... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566666653 3578888876543221110 000 1222333 56677777753 257788887
Q ss_pred CCc
Q 047260 580 NPN 582 (784)
Q Consensus 580 ~~~ 582 (784)
+..
T Consensus 110 t~~ 112 (341)
T PLN02153 110 KNE 112 (341)
T ss_pred CCE
Confidence 755
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=2.6 Score=47.58 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=18.1
Q ss_pred CeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260 634 GTAQVRFQPRIGQLLAAASDKVVSIFD 660 (784)
Q Consensus 634 ~v~~v~fsp~~~~Ll~~s~Dg~I~IwD 660 (784)
.|..+..++.|..++..+.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 355666777777777777777655543
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=37 Score=38.23 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=87.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc---eee
Q 047260 513 CHFSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF---CSQ 586 (784)
Q Consensus 513 l~fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~---~~~ 586 (784)
+-|....+.|+ +...|.+.=|-++.. .++..-....++|.+|.|++|.+.||+--.|++|.+++....+. ...
T Consensus 28 vFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 33443333333 333444555655422 22222234567999999999999999999999999998843221 112
Q ss_pred eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC----CCeeEEeecCCeeEEEEecCCCEEEEEEC--CCcEEEEE
Q 047260 587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN----PFLCTHITKGGTAQVRFQPRIGQLLAAAS--DKVVSIFD 660 (784)
Q Consensus 587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~----~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwD 660 (784)
.....+..|...+|....+ +.+.. +.-+-+|-.. ..+.+..++..+.-..|.++.+.++.++. .+++.=+-
T Consensus 107 ~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 2223345688999987643 43333 3334445443 34455666677888888888777665554 44444455
Q ss_pred CCCC
Q 047260 661 IETD 664 (784)
Q Consensus 661 l~t~ 664 (784)
++++
T Consensus 184 ~~~~ 187 (657)
T KOG2377|consen 184 FRAG 187 (657)
T ss_pred Eeec
Confidence 5444
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=23 Score=42.12 Aligned_cols=173 Identities=9% Similarity=0.182 Sum_probs=89.0
Q ss_pred CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE------eecCCeeEEEEecCC
Q 047260 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH------ITKGGTAQVRFQPRI 644 (784)
Q Consensus 571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~------~~~~~v~~v~fsp~~ 644 (784)
-.|+||++.. ....+..-.|. ++..+.|+.+.. +++...+|.+++|++-...... .....|..+.+...
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~-~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~- 138 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHG-ELIGMGWSDDEE--LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN- 138 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCC-CeeeecccCCce--EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC-
Confidence 4588888763 32333333443 788999997765 4455679999999986433222 11233444444333
Q ss_pred CEEEEEECCCcEEEE-ECCCCeEEEEEeC-CCCCEEEEEEc--CCCC---EEEEEe-CCeEEEEeCCCC-ceEEEeccCC
Q 047260 645 GQLLAAASDKVVSIF-DIETDRQTHSLQG-HAELVNYICWD--TNGD---YLASVS-QNLVKVWSMASG-ECIQELSSNG 715 (784)
Q Consensus 645 ~~Ll~~s~Dg~I~Iw-Dl~t~~~i~~l~~-h~~~V~sl~~s--pdg~---~Lasgs-dd~I~IwDl~t~-~~i~~l~~~~ 715 (784)
+ +++-..+|.|.+. +.+. ..++++.. ......+.||. +++. .++-.. .....++-.... .....+....
T Consensus 139 G-Vavlt~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 139 G-VAVLTVSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPN 216 (829)
T ss_pred c-eEEEecCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCC
Confidence 2 3333444544443 3332 22222222 11122223332 2211 111111 001111111111 1122233334
Q ss_pred CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
..+..|.++|+.++|+.-..+|.|.+-+.+..+++
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 67889999999999999999999999888776654
No 463
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=89.85 E-value=52 Score=39.49 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=74.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCe--EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEE-----eCCCe-
Q 047260 545 PEDHKSVVTDVRFRPNSSQLATASVDKS--VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-----DNDNE- 616 (784)
Q Consensus 545 l~~h~~~It~i~fspdg~~Latgs~Dg~--I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sg-----s~dg~- 616 (784)
...+...+..+.|+|++..++..+.++. ..+|-+.... ....+...|....|++++..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3457788899999999999998874432 3444433221 2233445677778888777555511 11222
Q ss_pred ------EEEEeCCCC-------------eeEEeec--CCeeEEEEecCCCEEEEEECCCc-------EEEEECCCCeEEE
Q 047260 617 ------IQYWSINPF-------------LCTHITK--GGTAQVRFQPRIGQLLAAASDKV-------VSIFDIETDRQTH 668 (784)
Q Consensus 617 ------I~iwDl~~~-------------~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~-------I~IwDl~t~~~i~ 668 (784)
+.+|..... ....... ..+....+++++..++....+.. ..++.. ....+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCceE
Confidence 222222111 1111111 23344445555555555444321 222322 233344
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe
Q 047260 669 SLQGHAELVNYICWDTNGDYLASVS 693 (784)
Q Consensus 669 ~l~~h~~~V~sl~~spdg~~Lasgs 693 (784)
.+......+..+.|.++|+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688889999998555543
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.83 E-value=12 Score=42.43 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=86.8
Q ss_pred CCCEEEE-EeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC-------cEEEEEeCCCeEEEEeCCC-Cee--E
Q 047260 560 NSSQLAT-ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT-------DLFCFCDNDNEIQYWSINP-FLC--T 628 (784)
Q Consensus 560 dg~~Lat-gs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~-------~ll~sgs~dg~I~iwDl~~-~~~--~ 628 (784)
+..+|+. |.....++--|++.++ ++..+.-|... -+.|.|... .-++ |-.+..|.-.|.+- +.. +
T Consensus 478 dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 4444443 4444556666777666 55555555443 466666532 1233 33455555555542 211 1
Q ss_pred EeecCCeeEEEE----ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCC
Q 047260 629 HITKGGTAQVRF----QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMA 703 (784)
Q Consensus 629 ~~~~~~v~~v~f----sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~ 703 (784)
...+.-.+.-.| ....+++++++..|.|++||.-....-..+.+....|..|..+.+|+++++.+..+|.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 222222222222 234578999999999999996544444556677789999999999999999999999998875
No 465
>PRK05560 DNA gyrase subunit A; Validated
Probab=89.79 E-value=49 Score=40.95 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=107.3
Q ss_pred ccCCCEEEEEeCCCeEEEEcCCCCcc--------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCC-
Q 047260 558 RPNSSQLATASVDKSVRLWDAANPNF--------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPF- 625 (784)
Q Consensus 558 spdg~~Latgs~Dg~I~IWdl~~~~~--------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl---~~~- 625 (784)
-++...+++-+.+|.|+--++.+... ....+.. ...+..+........+++.. ..|.+..... ...
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfT-s~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFT-NRGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEe-cCCeEEEEEhhhCcCCC
Confidence 44667888888999998876543211 0011112 23344444444444455444 4566555543 221
Q ss_pred -----eeE---Eeec--CCe-eEEEEe--cCCCEEEEEECCCcEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCC
Q 047260 626 -----LCT---HITK--GGT-AQVRFQ--PRIGQLLAAASDKVVSIFDIET-------DRQTHSLQGHAELVNYICWDTN 685 (784)
Q Consensus 626 -----~~~---~~~~--~~v-~~v~fs--p~~~~Ll~~s~Dg~I~IwDl~t-------~~~i~~l~~h~~~V~sl~~spd 685 (784)
..+ ..+. ..+ ..+.+. ++...++..+.+|.++-.++.. +.....+.....-+..+....+
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~ 652 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD 652 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Confidence 111 1111 222 333343 2567889999999998877643 2222333333333333333334
Q ss_pred CCEEEEEeCCeE---EEEeCCC------CceEEEeccCCCceEEE-EEecCCCEEEEEECCCeEEEEECCCC-------c
Q 047260 686 GDYLASVSQNLV---KVWSMAS------GECIQELSSNGNQFHSC-VFHPSYSTLLVVGGISSLELWNMAEN-------K 748 (784)
Q Consensus 686 g~~Lasgsdd~I---~IwDl~t------~~~i~~l~~~~~~I~sl-~fspdg~~L~s~s~dg~I~Iwdl~~~-------~ 748 (784)
..+++..+.+.+ .++++.. |..+..+.. +..|..+ .+.++..+++..+..|.++...+..- +
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 445555556643 3444421 223333432 2334443 44444447888888898777754321 1
Q ss_pred -eE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260 749 -SM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783 (784)
Q Consensus 749 -~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW 783 (784)
.. .+....+.+..+........++..+.+|.+..+
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf 769 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRT 769 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEE
Confidence 11 222223344333333333445556667766443
No 466
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=89.77 E-value=65 Score=40.53 Aligned_cols=260 Identities=5% Similarity=-0.019 Sum_probs=131.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCe---EEEEECCCC------ceeeecCC----CCCCeEE-EEEc--cCCCEEEEEeCCCe
Q 047260 509 KVTCCHFSSDGKLLASSGHDRK---VVLWNMDTL------QTESTPED----HKSVVTD-VRFR--PNSSQLATASVDKS 572 (784)
Q Consensus 509 ~V~~l~fspdg~~Lasgs~Dg~---I~IWd~~t~------~~~~~l~~----h~~~It~-i~fs--pdg~~Latgs~Dg~ 572 (784)
.|..+.......+|+.-+..|. +.+|++... ..+..+-. -...|.. +.+. .+..+|+.++..|.
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~ 632 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGG 632 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCe
Confidence 3444444444445555566665 456666543 33333321 1333433 3443 23457888999999
Q ss_pred EEEEcCCCCc-----ceeeeccCCCCCeEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCC
Q 047260 573 VRLWDAANPN-----FCSQAYTGHSSPIMSLDFHPKK--TDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIG 645 (784)
Q Consensus 573 I~IWdl~~~~-----~~~~~~~~h~~~V~sl~~sp~~--~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~ 645 (784)
|+...+..-. .....+. ..+.+.++.+...+ ...++..+..|.+..|+.+..........+|..+.+.++.
T Consensus 633 VKrt~L~ef~~~r~~~~aikL~-e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkgI~L~~~D- 710 (957)
T PRK13979 633 IKKTSLDKFVTNYTKLMALKLK-KGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPND- 710 (957)
T ss_pred EEEEehhhccccccceEEEEcC-CCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCeeeEeeCCCC-
Confidence 9988775321 1111222 23455555555432 2355666678888888877655555555677888876543
Q ss_pred EEEEEEC---------------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCC--
Q 047260 646 QLLAAAS---------------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN---LVKVWSMASG-- 705 (784)
Q Consensus 646 ~Ll~~s~---------------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~-- 705 (784)
.++.+.. .+.+.+.|.+ ...-+.+..+....+++..+.| .+++|++...
T Consensus 711 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe~~~ 779 (957)
T PRK13979 711 SIKKVDFCDNYEYKEFYVNINKKGIIKISDKD-----------NKSSISVFTNSSKNLLIFSDEGKVYKIPAFMLQNIKN 779 (957)
T ss_pred EEEEEEEEhhhhhcchhhhcccccceeecccc-----------cccccceeecCCceEEEEecCCeEEEEEeeecccccc
Confidence 3333221 1333333333 2222333444445555555555 6777877652
Q ss_pred --ceEEEec---cCCCceEEE-EEec--CCCEEEEEECCCeEEEEECCC------C-ceEEecccCCceEEEEEeC-CCC
Q 047260 706 --ECIQELS---SNGNQFHSC-VFHP--SYSTLLVVGGISSLELWNMAE------N-KSMTIAAHENIISALAQSP-VTG 769 (784)
Q Consensus 706 --~~i~~l~---~~~~~I~sl-~fsp--dg~~L~s~s~dg~I~Iwdl~~------~-~~~~~~~h~~~V~slafsp-dg~ 769 (784)
..+..+. .....|..+ .+.+ ...+|+..+..|.++-..+.. + ..+.+....+.+..+.... ++.
T Consensus 780 kG~~i~nll~~l~~~E~Ii~i~~~~~~~~~~~Ll~vTk~G~iKRt~lsef~~~rr~~~aikLke~~DeLV~v~~v~~~~~ 859 (957)
T PRK13979 780 EGINISALTGDFEKDEKIIKIISIFEFEEDLSIYFFSKKGLVKKTLLNEFKGEGNSTQAYKFKHKEDELVNVDIKEHEEK 859 (957)
T ss_pred cCcCHHHhhcccCCCCeEEEEEeecccCCCceEEEEecCCcEEEeEHHHhcccCCCeEEEEecCCCCeEEEEEEecCCCC
Confidence 1111111 112223332 3332 234688889999887765432 1 1113332334555555554 344
Q ss_pred EEEEEECCCcEE
Q 047260 770 MVASASHDSSVK 781 (784)
Q Consensus 770 ~LaSgs~DG~V~ 781 (784)
.|+..+.+|.+.
T Consensus 860 eIvL~T~~G~~i 871 (957)
T PRK13979 860 NILLITEKGMAI 871 (957)
T ss_pred EEEEEECCCeEE
Confidence 555566666553
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.70 E-value=31 Score=37.44 Aligned_cols=107 Identities=9% Similarity=0.162 Sum_probs=51.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCce---eeecCCCCCCe--EEEEEccCCCEEEEEeC-----CCeEEEEcCCCCc
Q 047260 518 DGKLLASSGHD-----RKVVLWNMDTLQT---ESTPEDHKSVV--TDVRFRPNSSQLATASV-----DKSVRLWDAANPN 582 (784)
Q Consensus 518 dg~~Lasgs~D-----g~I~IWd~~t~~~---~~~l~~h~~~I--t~i~fspdg~~Latgs~-----Dg~I~IWdl~~~~ 582 (784)
++.+++.|+.+ ..+..||+.+.+. ...+..-..+. .+++.. ++++.+.|+. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666777754 3577777765542 12221111111 122222 5666677664 2368888988765
Q ss_pred ceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCee
Q 047260 583 FCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDN----EIQYWSINPFLC 627 (784)
Q Consensus 583 ~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg----~I~iwDl~~~~~ 627 (784)
..... +... ......+..-+ ..+++.|+.++ .+.+||+.+.+-
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 33221 1111 11111111122 34777776553 356788876543
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.64 E-value=27 Score=39.65 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260 716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAE 746 (784)
Q Consensus 716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~ 746 (784)
..|..++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3478888888888899999999999999874
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.55 E-value=0.04 Score=61.10 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=96.1
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc
Q 047260 636 AQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS 713 (784)
Q Consensus 636 ~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~ 713 (784)
....|.+.+..+++++.+..|..||-... .+..+. ..+....++|+.++..++... .+.+.+||+.+...- .+..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence 34567777788999999999999986532 222222 344566788998888766655 459999999764211 1111
Q ss_pred -CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-cCCceEEEEEeCCCCEEEEEECCC
Q 047260 714 -NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-HENIISALAQSPVTGMVASASHDS 778 (784)
Q Consensus 714 -~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-h~~~V~slafspdg~~LaSgs~DG 778 (784)
....-.-+.|++....++.+...|.+.|++..+.+.....+ |..++++++|.+.+ +.+.++.|.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 11111226789988889999888999999998887775555 99999999999876 444454444
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.54 E-value=2.7 Score=43.23 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=53.5
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-------e-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCC
Q 047260 638 VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL-------Q-------GHAELVNYICWDTNGDYLASVSQNLVKVWSMA 703 (784)
Q Consensus 638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l-------~-------~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~ 703 (784)
+.+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+++..+.||..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 335567788999999999999999888765432 1 24567888888899998988888888899876
Q ss_pred CCceE
Q 047260 704 SGECI 708 (784)
Q Consensus 704 t~~~i 708 (784)
-+.-+
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 55433
No 471
>PLN02193 nitrile-specifier protein
Probab=89.45 E-value=46 Score=38.39 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=87.8
Q ss_pred CCCEEEEEeCC-------CeEEEEcCCCCcceeeeccC-CCC--C-eEEEEEcCCCCcEEEEEeCC-----CeEEEEeCC
Q 047260 560 NSSQLATASVD-------KSVRLWDAANPNFCSQAYTG-HSS--P-IMSLDFHPKKTDLFCFCDND-----NEIQYWSIN 623 (784)
Q Consensus 560 dg~~Latgs~D-------g~I~IWdl~~~~~~~~~~~~-h~~--~-V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~ 623 (784)
++.+++.|+.+ ..+.+||+++.........+ ... . -.+++.. +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24778888775533221111 111 0 1112221 34467777654 357888887
Q ss_pred CCeeEEeecC-----Cee-EEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEEeC------CCCCEEEEEEcCCC
Q 047260 624 PFLCTHITKG-----GTA-QVRFQPRIGQLLAAASD-----KVVSIFDIETDRQTHSLQG------HAELVNYICWDTNG 686 (784)
Q Consensus 624 ~~~~~~~~~~-----~v~-~v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~l~~------h~~~V~sl~~spdg 686 (784)
+.+-...... +.. ..+..-++..++.|+.+ ..+..||+.+.+-.. +.. .......+. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~--~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEV--VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEE--ECC
Confidence 6544332211 111 11122234445555543 346788887654221 110 111111122 245
Q ss_pred CEEEEEe-C----CeEEEEeCCCCceEEEecc---CCCceEEEEEecCCCEEEEEECC--------------CeEEEEEC
Q 047260 687 DYLASVS-Q----NLVKVWSMASGECIQELSS---NGNQFHSCVFHPSYSTLLVVGGI--------------SSLELWNM 744 (784)
Q Consensus 687 ~~Lasgs-d----d~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg~~L~s~s~d--------------g~I~Iwdl 744 (784)
++++.++ + +.|.+||+.+.+....-.. ........+..-+++.++.++.. ..+.+||+
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 6655554 2 3689999988654322111 11111122222345566666642 24788998
Q ss_pred CCCceEE
Q 047260 745 AENKSMT 751 (784)
Q Consensus 745 ~~~~~~~ 751 (784)
.+.+-..
T Consensus 410 ~t~~W~~ 416 (470)
T PLN02193 410 ETLQWER 416 (470)
T ss_pred CcCEEEE
Confidence 8776553
No 472
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.42 E-value=42 Score=37.85 Aligned_cols=143 Identities=9% Similarity=0.044 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeE-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-----E
Q 047260 595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCT-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-----Q 666 (784)
Q Consensus 595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-----~ 666 (784)
...+...+++. +++.+.....++-||--.. ..+ ......+..+.+.+++..++++ .+|.|..- ...++ .
T Consensus 241 f~~v~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCC-EEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccc
Confidence 34445566654 4444443333333443221 212 1223556788888887766554 55655432 33332 1
Q ss_pred EEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEe---ccCCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260 667 THSLQG--HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQEL---SSNGNQFHSCVFHPSYSTLLVVGGISSLEL 741 (784)
Q Consensus 667 i~~l~~--h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l---~~~~~~I~sl~fspdg~~L~s~s~dg~I~I 741 (784)
...+.. ....+..+.|.+++..+++|..+.+.... ..|+.-... ..-...++.+.|.++++ .++.+.+|.|..
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEE
Confidence 222221 12358899999999999988888555543 334332222 22245678889877654 667777787765
Q ss_pred E
Q 047260 742 W 742 (784)
Q Consensus 742 w 742 (784)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 473
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.26 E-value=41 Score=37.50 Aligned_cols=63 Identities=6% Similarity=0.069 Sum_probs=30.4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----ceeeecCC-CCCCeEEEEEccCCCEEEEEeCCC-----------eEEEEcCCC
Q 047260 518 DGKLLASSG-HDRKVVLWNMDTL----QTESTPED-HKSVVTDVRFRPNSSQLATASVDK-----------SVRLWDAAN 580 (784)
Q Consensus 518 dg~~Lasgs-~Dg~I~IWd~~t~----~~~~~l~~-h~~~It~i~fspdg~~Latgs~Dg-----------~I~IWdl~~ 580 (784)
++++.+.++ .+..+.++|++.. ..+..+.. .......+. -++.+.+.|+.+. .+..||..+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence 455444444 3455778887632 12222211 111112222 2566777776532 467788876
Q ss_pred Cc
Q 047260 581 PN 582 (784)
Q Consensus 581 ~~ 582 (784)
..
T Consensus 116 n~ 117 (376)
T PRK14131 116 NS 117 (376)
T ss_pred CE
Confidence 55
No 474
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=89.06 E-value=37 Score=36.72 Aligned_cols=203 Identities=15% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce---------------eeecCCCCCCeEEEEEccCC-CEEEEEe
Q 047260 506 RNSKVTCCHFSSDGKLLAS-SGHDRKVVLWNMDTLQT---------------ESTPEDHKSVVTDVRFRPNS-SQLATAS 568 (784)
Q Consensus 506 H~~~V~~l~fspdg~~Las-gs~Dg~I~IWd~~t~~~---------------~~~l~~h~~~It~i~fspdg-~~Latgs 568 (784)
+...|+++...+.-+.|++ ++....++++++..... ....-.|......+...... ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 5667999999987776554 44445599999853321 01112444444444444222 2344555
Q ss_pred CCCeEEEEcCCCC--cc-eeee----ccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCC--CeeEE------eec
Q 047260 569 VDKSVRLWDAANP--NF-CSQA----YTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINP--FLCTH------ITK 632 (784)
Q Consensus 569 ~Dg~I~IWdl~~~--~~-~~~~----~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~--~~~~~------~~~ 632 (784)
...+|.++..... +. ..+. ...-..++..+..+++. ...++.|...+...++++.. ..... ...
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5667777654432 11 1111 00112233333333331 23455555432333333321 10000 000
Q ss_pred -C-CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE
Q 047260 633 -G-GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT--HSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECI 708 (784)
Q Consensus 633 -~-~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i--~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i 708 (784)
. ...++..-++ +.++.+..+ ...+.|....+.. ..+. -.....++++. ..+|++-.++.|.|+++.+++.+
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~~l~ 275 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDE-FGVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTGELL 275 (302)
T ss_pred cccCceEEEEECC-CeEEEEECc-EEEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCCceE
Confidence 1 1222222223 344444433 3444444321111 1121 23344566665 46777777889999999999988
Q ss_pred EEecc
Q 047260 709 QELSS 713 (784)
Q Consensus 709 ~~l~~ 713 (784)
.++..
T Consensus 276 q~i~~ 280 (302)
T smart00036 276 QELAD 280 (302)
T ss_pred EEEec
Confidence 88864
No 475
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.93 E-value=6.8 Score=44.29 Aligned_cols=134 Identities=10% Similarity=0.139 Sum_probs=87.9
Q ss_pred ecCCCEEEEE-ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC--------CEEEEEeCCeEEEEeCCC-CceEEE
Q 047260 641 QPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG--------DYLASVSQNLVKVWSMAS-GECIQE 710 (784)
Q Consensus 641 sp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg--------~~Lasgsdd~I~IwDl~t-~~~i~~ 710 (784)
..+...|+.- .....++-.|++.|+.+..+..|... -|.|.|+. ..|+..++..|.-.|.+- |..+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 3344444443 34578888999999999999877665 46677753 356777777777777654 322222
Q ss_pred ecc----CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-EEecccCCceEEEEEeCCCCEEEEEECC
Q 047260 711 LSS----NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS-MTIAAHENIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 711 l~~----~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~-~~~~~h~~~V~slafspdg~~LaSgs~D 777 (784)
... ......+..- ....+|++++..|.|++||.-.... ..+.+....|..|..+.+|++|++.|..
T Consensus 554 ~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 211 1122333333 3445899999999999999654433 3566777889999999999977766643
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=10 Score=43.02 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629 (784)
Q Consensus 550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~ 629 (784)
-.|..|..++.|..++..+.+|.+.++=.+.-. ....+......|.|-.+.-+.. ++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------ 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNSEFEDGKSTVNCRTTPVAER-FFTSS------------------ 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccceecCCCceEEEEeecccce-eeccC------------------
Confidence 357788889999999999999877665432211 1222333334455554443322 22211
Q ss_pred eecCCeeEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEE
Q 047260 630 ITKGGTAQVRFQPRI---GQLLAAASDKVVSIFDIETDRQTHSL 670 (784)
Q Consensus 630 ~~~~~v~~v~fsp~~---~~Ll~~s~Dg~I~IwDl~t~~~i~~l 670 (784)
..-.+..++|+|+. .+|++-..|..|++||+.....+...
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11234456788875 67888899999999999877655443
No 477
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=88.61 E-value=0.058 Score=66.07 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=6.5
Q ss_pred CCCCcccccchhh
Q 047260 154 DLDTSPALMDANK 166 (784)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (784)
-+.+-.++|+|-+
T Consensus 2016 q~~~~~~~l~p~~ 2028 (2220)
T KOG3598|consen 2016 QSAGATQQLQPMQ 2028 (2220)
T ss_pred ccCCCceecCchH
Confidence 3344446666544
No 478
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.60 E-value=0.18 Score=56.17 Aligned_cols=145 Identities=15% Similarity=0.227 Sum_probs=102.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629 (784)
Q Consensus 550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~ 629 (784)
.......|-+.+.-++.++.+..|..||-..... . -...+.....++|..+++.+++.+...+.+.+||+++...-.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-l--e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-L--ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhccee-c--ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3344567778777788888898999998654321 1 112345677889998888888888899999999998532221
Q ss_pred eecCC---eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260 630 ITKGG---TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLV 697 (784)
Q Consensus 630 ~~~~~---v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I 697 (784)
.-.+. -.-+.|++....++.+...|.+.|+...+.+.+...-.|...+++++|.+.+..+....+..+
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 11111 112568888888888888999999998887766665558899999999988776655544333
No 479
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.53 E-value=54 Score=38.00 Aligned_cols=258 Identities=11% Similarity=0.047 Sum_probs=129.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586 (784)
Q Consensus 508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~ 586 (784)
.+|..+..+-.|+ |.+|+.+| |++.+.+..+...-.. -..+.|..+.-..+| .+-.|+..|..+. ..........
T Consensus 206 k~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~ 281 (671)
T COG3292 206 KAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIP 281 (671)
T ss_pred hhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCcccc
Confidence 3455555554554 66677777 8888776533222211 123344444444344 4666666654332 3332221111
Q ss_pred eccCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEeecCCeeE-EEEec--CCCEEEEEECCCcEEEE
Q 047260 587 AYTGH--SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHITKGGTAQ-VRFQP--RIGQLLAAASDKVVSIF 659 (784)
Q Consensus 587 ~~~~h--~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~~~~~v~~-v~fsp--~~~~Ll~~s~Dg~I~Iw 659 (784)
...-| -+.|.++....++. +-+++.++.+++-+-.-. ..+...++.+.. ++..| .+..+-...+-|.+.+-
T Consensus 282 ~~~~~l~~S~vnsL~~D~dGs--LWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~va 359 (671)
T COG3292 282 LSKMHLGVSTVNSLWLDTDGS--LWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVA 359 (671)
T ss_pred ccccCCccccccceeeccCCC--EeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEe
Confidence 11111 23455665555554 445666666665443211 111112121111 11111 11122222223344455
Q ss_pred ECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC-CceEEEecc-CCCceEEEEEecCCCEEEEEECC
Q 047260 660 DIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQNLVKVWSMAS-GECIQELSS-NGNQFHSCVFHPSYSTLLVVGGI 736 (784)
Q Consensus 660 Dl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t-~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~d 736 (784)
+-.++..++.... ....|+.+++..+|..-+....+-+..|+..+ +..+.+..+ ..++|..+.-.|+++ |..++.+
T Consensus 360 n~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~ 438 (671)
T COG3292 360 NGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSG 438 (671)
T ss_pred cCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccC
Confidence 5555655554332 34567778888866655544455777888777 444444433 346778888888888 8888888
Q ss_pred CeEEEEECCCCceE---Eecc---cCCceEEEEEeCCCCEEEE
Q 047260 737 SSLELWNMAENKSM---TIAA---HENIISALAQSPVTGMVAS 773 (784)
Q Consensus 737 g~I~Iwdl~~~~~~---~~~~---h~~~V~slafspdg~~LaS 773 (784)
|.++. +.+.++.. .+.. ..+.|..+.+.+++++-+.
T Consensus 439 Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a 480 (671)
T COG3292 439 GLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA 480 (671)
T ss_pred CeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE
Confidence 86554 33443333 1112 2345777888888875443
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.99 E-value=3 Score=42.88 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=47.6
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCceEE--------ec-------ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260 722 VFHPSYSTLLVVGGISSLELWNMAENKSMT--------IA-------AHENIISALAQSPVTGMVASASHDSSVKLWK 784 (784)
Q Consensus 722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~--------~~-------~h~~~V~slafspdg~~LaSgs~DG~V~IWd 784 (784)
.+...+.++++.+.+|.+++||+.+.+.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 355678899999999999999999987651 11 3556788899998887777665 57788875
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.91 E-value=56 Score=37.44 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=41.4
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeecC-----CCCCCeEEEEEccCC
Q 047260 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT--ESTPE-----DHKSVVTDVRFRPNS 561 (784)
Q Consensus 502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~-----~h~~~It~i~fspdg 561 (784)
.+...-...+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3444556789999999998887765579999998665432 21111 135678999999874
No 482
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.84 E-value=5.6 Score=47.53 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=76.4
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C----c---------eeeecCCCCCCeEEEEEc--cCCCEE
Q 047260 509 KVTCCHFSS--DGKLLASSGHDRKVVLWNMDT-------L----Q---------TESTPEDHKSVVTDVRFR--PNSSQL 564 (784)
Q Consensus 509 ~V~~l~fsp--dg~~Lasgs~Dg~I~IWd~~t-------~----~---------~~~~l~~h~~~It~i~fs--pdg~~L 564 (784)
.|+.|.... +...|+.|.+||.|.+|.+++ . . +...+ .....++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 366665544 556899999999999997632 1 0 11111 234578999998 778888
Q ss_pred EEEeCCCeEEEEcCCC--CcceeeeccCCCCCeEEEEEcCCC--C---cEEEEEeCCCeEEEEeC
Q 047260 565 ATASVDKSVRLWDAAN--PNFCSQAYTGHSSPIMSLDFHPKK--T---DLFCFCDNDNEIQYWSI 622 (784)
Q Consensus 565 atgs~Dg~I~IWdl~~--~~~~~~~~~~h~~~V~sl~~sp~~--~---~ll~sgs~dg~I~iwDl 622 (784)
|+++....|.||-+.. .+.....-..|...|-+|+|.++. . ..+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888876543 221111122356679999998764 2 27778888999998887
No 483
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=87.28 E-value=93 Score=39.27 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=76.6
Q ss_pred CEEEEEEC---------CCcEEEEECCC-----CeE-----EEEE--eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeC-
Q 047260 645 GQLLAAAS---------DKVVSIFDIET-----DRQ-----THSL--QGHAELVNYICWDTNGDYLASVSQNLVKVWSM- 702 (784)
Q Consensus 645 ~~Ll~~s~---------Dg~I~IwDl~t-----~~~-----i~~l--~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl- 702 (784)
.+|++|.. -|.+.|||+-. +++ ++.+ +.-++.|..+|= -+| +|+++..-.|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence 46776653 38899999732 222 2222 235567776653 234 455555558999999
Q ss_pred CCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-eEEecc---cCCceEEEEEeCCCC--EEEEEEC
Q 047260 703 ASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-SMTIAA---HENIISALAQSPVTG--MVASASH 776 (784)
Q Consensus 703 ~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-~~~~~~---h~~~V~slafspdg~--~LaSgs~ 776 (784)
+....+..- --.-++......--.++|+.+.--..|.+.-..... .+.+.. ..-.+.++.|--||. .++++..
T Consensus 1125 r~~~ligVa-FiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa 1203 (1366)
T KOG1896|consen 1125 RDSELIGVA-FIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDA 1203 (1366)
T ss_pred cCCcceeeE-EeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcC
Confidence 444332211 111222333333334567777666667766654432 223322 233577888887776 6778888
Q ss_pred CCcEEEe
Q 047260 777 DSSVKLW 783 (784)
Q Consensus 777 DG~V~IW 783 (784)
|+.|++|
T Consensus 1204 ~rNi~vy 1210 (1366)
T KOG1896|consen 1204 DRNIHVY 1210 (1366)
T ss_pred CCcEEEE
Confidence 9999886
No 484
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.19 E-value=53 Score=36.40 Aligned_cols=186 Identities=5% Similarity=-0.064 Sum_probs=100.0
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCcceeeeccCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEE
Q 047260 560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGH-SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQV 638 (784)
Q Consensus 560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v 638 (784)
++ .++++..||.|.-.|.+++...-...... ...+.+-.+..+|. ++.++.++.++.+|.+++..+........ .
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~ 143 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGS-P 143 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCC-e
Confidence 44 45555788888888888766321111110 11222222223554 66677788999999987777666554331 1
Q ss_pred EE----ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC---CEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEE
Q 047260 639 RF----QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE---LVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQ 709 (784)
Q Consensus 639 ~f----sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~---~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~ 709 (784)
.+ -.....++..+.++.+...|..+++....+..... .+..-....++..++... ++.+.-.|..+|..+.
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEee
Confidence 11 11234455555789999999998887766543221 111111122333333333 2367777888887766
Q ss_pred EeccC----CCce------EEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260 710 ELSSN----GNQF------HSCVFHPSYSTLLVVGGISSLELWNMAENKSM 750 (784)
Q Consensus 710 ~l~~~----~~~I------~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~ 750 (784)
..+.. ...+ ..-...-++ .++.++.++.+...|..+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 63211 1111 000111111 2466667777888888888877
No 485
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.03 E-value=7.2 Score=43.99 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=64.6
Q ss_pred CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCe-EEEEEccC-C---------
Q 047260 493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV-TDVRFRPN-S--------- 561 (784)
Q Consensus 493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I-t~i~fspd-g--------- 561 (784)
...+......|......+.+|+.+|++++.|+...-|.|.++|+.++..++..++..+.= .-+..... .
T Consensus 293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~ 372 (415)
T PF14655_consen 293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSP 372 (415)
T ss_pred CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccccccccccc
Confidence 345566677788888899999999999999998888999999999998888887655431 11111111 1
Q ss_pred -------C-EEEEEeCCCeEEEEcCCCCc
Q 047260 562 -------S-QLATASVDKSVRLWDAANPN 582 (784)
Q Consensus 562 -------~-~Latgs~Dg~I~IWdl~~~~ 582 (784)
. +++-+-.-|.|.||++..+.
T Consensus 373 ~~~~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 373 KSSSRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence 1 23445667889999988765
No 486
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.97 E-value=25 Score=33.15 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=65.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------eeeecCCCCCCeEEEEEcc-----CCCEEEEEeCCCeEEEEc
Q 047260 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--------TESTPEDHKSVVTDVRFRP-----NSSQLATASVDKSVRLWD 577 (784)
Q Consensus 511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--------~~~~l~~h~~~It~i~fsp-----dg~~Latgs~Dg~I~IWd 577 (784)
..-.|......|++++.-|+|.|++..... .+..+ .-...|++|+--+ +...|+.|+. ..+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 344566666688889999999999876332 22333 3456677776444 3456666654 6799999
Q ss_pred CCCCcceeeeccCCCCCeEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCC
Q 047260 578 AANPNFCSQAYTGHSSPIMSLDFHP---KKTDLFCFCDNDNEIQYWSINPF 625 (784)
Q Consensus 578 l~~~~~~~~~~~~h~~~V~sl~~sp---~~~~ll~sgs~dg~I~iwDl~~~ 625 (784)
+..... ..++.-.+.|.++.+-. ....++++|+ +..|.-||.+..
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN 127 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc
Confidence 987552 23334446677776632 1222444333 555665555543
No 487
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.91 E-value=36 Score=37.21 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCEEEEEe-C------CeEEEEeCCCCceEEEec---------------cCCCceEEEEEecCCCEEEEEE
Q 047260 677 VNYICWDTNGDYLASVS-Q------NLVKVWSMASGECIQELS---------------SNGNQFHSCVFHPSYSTLLVVG 734 (784)
Q Consensus 677 V~sl~~spdg~~Lasgs-d------d~I~IwDl~t~~~i~~l~---------------~~~~~I~sl~fspdg~~L~s~s 734 (784)
.-+|++.++|.++++.. + ..|+.++.. |+.+..+. .....+-.++++|++..|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 34677777787777655 3 367777765 65554442 1234578999999999777765
Q ss_pred CC-----C--e-------EEE--EECCC-Cce---E--Eecc-----cCCceEEEEEeCCCCEEEE
Q 047260 735 GI-----S--S-------LEL--WNMAE-NKS---M--TIAA-----HENIISALAQSPVTGMVAS 773 (784)
Q Consensus 735 ~d-----g--~-------I~I--wdl~~-~~~---~--~~~~-----h~~~V~slafspdg~~LaS 773 (784)
.. + . ++| ||..+ +.. . .+.. ....|+.+.+-+++++|+-
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 42 2 1 445 45544 211 1 1221 4567899999999987664
No 488
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.84 E-value=31 Score=35.21 Aligned_cols=130 Identities=10% Similarity=0.087 Sum_probs=65.4
Q ss_pred CEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEE-eCCCCeeEEeecCC
Q 047260 562 SQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYW-SINPFLCTHITKGG 634 (784)
Q Consensus 562 ~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iw-Dl~~~~~~~~~~~~ 634 (784)
+.|+.+...+.|.+|++..... ....+. .-+.|..+.++..|++++..-.... .+|+| +++.. .....+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~---~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ---KEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh---cccCCc
Confidence 4555556677899999984332 333333 3478999999999885554433221 44544 22211 000111
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 047260 635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG 705 (784)
Q Consensus 635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~ 705 (784)
+. ++.. | +-+.++..... ...-.+..+. -...+.+++..|-.--|++|+++.+.||.+...
T Consensus 105 v~-vRia--G-~~v~~~~~~~~-----~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VR-VRIA--G-HRVTPSFNESS-----KDQLEIIELP-LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EE-EEEc--c-cccccCCCCcc-----ccceEEEEec-CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 11 1100 0 01111111110 0011122222 355677888777555566778889999987643
No 489
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.67 E-value=36 Score=37.29 Aligned_cols=183 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceeeecCCCCCCeEEEEEc--cCCCEEEEEeCC--------
Q 047260 512 CCHFSSDGKLLASSGHD-----------RKVVLWNMDTLQTESTPEDHKSVVTDVRFR--PNSSQLATASVD-------- 570 (784)
Q Consensus 512 ~l~fspdg~~Lasgs~D-----------g~I~IWd~~t~~~~~~l~~h~~~It~i~fs--pdg~~Latgs~D-------- 570 (784)
.....-++++.+.|+.+ ..+..||..+.+-..............+.. -++++.+.|+.+
T Consensus 57 ~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~ 136 (346)
T TIGR03547 57 AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYF 136 (346)
T ss_pred ceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHH
Q ss_pred -------------------------------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----
Q 047260 571 -------------------------------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND----- 614 (784)
Q Consensus 571 -------------------------------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d----- 614 (784)
..|.+||..+.......-.............-++. +++.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~ 215 (346)
T TIGR03547 137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNK-LLLINGEIKPGLR 215 (346)
T ss_pred hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCE-EEEEeeeeCCCcc
Q ss_pred -CeEEEEeCCCCeeEEeecCCe------------eEEEEecCCCEEEEEECC----------------------CcEEEE
Q 047260 615 -NEIQYWSINPFLCTHITKGGT------------AQVRFQPRIGQLLAAASD----------------------KVVSIF 659 (784)
Q Consensus 615 -g~I~iwDl~~~~~~~~~~~~v------------~~v~fsp~~~~Ll~~s~D----------------------g~I~Iw 659 (784)
..+.+++++............ ...+...++..+++|+.+ ..+.+|
T Consensus 216 ~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 295 (346)
T TIGR03547 216 TAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY 295 (346)
T ss_pred chheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN 695 (784)
Q Consensus 660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd 695 (784)
|.++.+-...-.-........+..-++++++.|+.+
T Consensus 296 d~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 296 ALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.44 E-value=93 Score=38.40 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=91.3
Q ss_pred cCCCceEEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CceeeecCC---CCCCeEEEEEcc
Q 047260 505 SRNSKVTCCHFS---S----DGKLLASSGHDRKVVLWNMD------T---------LQTESTPED---HKSVVTDVRFRP 559 (784)
Q Consensus 505 ~H~~~V~~l~fs---p----dg~~Lasgs~Dg~I~IWd~~------t---------~~~~~~l~~---h~~~It~i~fsp 559 (784)
.-..+|..|+|. . ..++|++ -....+.|+... . ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 467789999998 2 2235554 445567777721 1 122333321 234678899999
Q ss_pred -CCCEEEEEeCCCeEEEEcCCCCc----ceeeeccCCC----------CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 047260 560 -NSSQLATASVDKSVRLWDAANPN----FCSQAYTGHS----------SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP 624 (784)
Q Consensus 560 -dg~~Latgs~Dg~I~IWdl~~~~----~~~~~~~~h~----------~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~ 624 (784)
+...||+....|.-.||++.... ........+. +.-..|.|.++...+|+ ++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-CN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-Ec-CCceEEEECCC
Confidence 66789999999999999992111 0111111111 22347788777664554 33 56788888886
Q ss_pred CeeEE-ee----cCCeeEEEEecCCC-EEEEEECCCcEEEEECCC
Q 047260 625 FLCTH-IT----KGGTAQVRFQPRIG-QLLAAASDKVVSIFDIET 663 (784)
Q Consensus 625 ~~~~~-~~----~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t 663 (784)
..... .. ...+..+.-++... ++++- ....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 54422 11 14566777666632 33333 347788888876
No 491
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.07 E-value=17 Score=36.73 Aligned_cols=165 Identities=7% Similarity=-0.002 Sum_probs=87.0
Q ss_pred cEEEEEeC--CCeEEEEeCCCCeeEEeecCC---eeEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEeCCCCCEEE
Q 047260 606 DLFCFCDN--DNEIQYWSINPFLCTHITKGG---TAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVNY 679 (784)
Q Consensus 606 ~ll~sgs~--dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~~h~~~V~s 679 (784)
+++.+.+. ...|++||+++++.+...+-. +..--...-+..++.- -.+|.-.+||.++.+++..+. ..+.=..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence 46665553 457999999987776554422 1111112233444443 458999999999888776665 2333344
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEecc--CC---CceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE--
Q 047260 680 ICWDTNGDYLASVS-QNLVKVWSMASGECIQELSS--NG---NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-- 751 (784)
Q Consensus 680 l~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~--~~---~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-- 751 (784)
++. |++-|+.+. ..++..-|.++...+.++.. .+ ..++.+.|- +|...+-.-.+..|...|..+++...
T Consensus 136 Lt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 136 LTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 443 344344433 33777777766544333321 11 122233332 23333333333344444555554432
Q ss_pred -----------ecccCCceEEEEEeCCCC-EEEEE
Q 047260 752 -----------IAAHENIISALAQSPVTG-MVASA 774 (784)
Q Consensus 752 -----------~~~h~~~V~slafspdg~-~LaSg 774 (784)
-..|....+.+++.|++. ++++|
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 123556788999999874 55554
No 492
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.01 E-value=45 Score=41.28 Aligned_cols=127 Identities=10% Similarity=0.061 Sum_probs=71.7
Q ss_pred CeEEEEeCC-CCe---eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCE
Q 047260 615 NEIQYWSIN-PFL---CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG--HAELVNYICWDTNGDY 688 (784)
Q Consensus 615 g~I~iwDl~-~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spdg~~ 688 (784)
|.++.|++- .++ .++...-.....++.|..+++++ +....+++||+-..++++.... ....|..+++. +..
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~R 988 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GAR 988 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceE
Confidence 456666653 222 22222333344567777775554 5568999999988776655432 24567777764 555
Q ss_pred EEEEe-CC--eEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260 689 LASVS-QN--LVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745 (784)
Q Consensus 689 Lasgs-dd--~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~ 745 (784)
+++|. .+ ....|+-...+.+.-... -...|+++.+- |...++.+..-|.+.+..+.
T Consensus 989 I~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 989 IVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 66665 33 445565544444333322 23345555554 44457777777877776553
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.98 E-value=12 Score=39.14 Aligned_cols=126 Identities=15% Similarity=0.234 Sum_probs=73.7
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCC--Cce-EEEe---ccCCCceEEEEEec
Q 047260 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMAS--GEC-IQEL---SSNGNQFHSCVFHP 725 (784)
Q Consensus 656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t--~~~-i~~l---~~~~~~I~sl~fsp 725 (784)
=.+||+.+++....-........+-.+.+||++|.+|++ + .+++++... ..+ ..+. ........+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888877543322222223333456789999999884 3 788988654 111 1111 23345566777789
Q ss_pred CCCEEEEEECCC-eEEEEECCC--CceEEe--cc------cCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260 726 SYSTLLVVGGIS-SLELWNMAE--NKSMTI--AA------HENIISALAQSPVTGMVASASHDSSVK 781 (784)
Q Consensus 726 dg~~L~s~s~dg-~I~Iwdl~~--~~~~~~--~~------h~~~V~slafspdg~~LaSgs~DG~V~ 781 (784)
||+.|++|+... +..+|.-.. .....+ .. ....--.+...|+|++|+.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998875 566766532 112211 11 011112455679999999998776554
No 494
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.74 E-value=2.8 Score=31.18 Aligned_cols=31 Identities=35% Similarity=0.716 Sum_probs=26.4
Q ss_pred CceEEEEEcCC-C--CEEEEEeCCCeEEEEECCC
Q 047260 508 SKVTCCHFSSD-G--KLLASSGHDRKVVLWNMDT 538 (784)
Q Consensus 508 ~~V~~l~fspd-g--~~Lasgs~Dg~I~IWd~~t 538 (784)
+.|.+|.|||+ + ++|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899888889999999984
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.13 E-value=61 Score=36.14 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=19.3
Q ss_pred EEEEECCCCceEEecccC-CceEEEEEeCCCCEEEEEECC
Q 047260 739 LELWNMAENKSMTIAAHE-NIISALAQSPVTGMVASASHD 777 (784)
Q Consensus 739 I~Iwdl~~~~~~~~~~h~-~~V~slafspdg~~LaSgs~D 777 (784)
+.+||+.+++-..+..-. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888776543222111 111122334457777777753
No 496
>PLN02193 nitrile-specifier protein
Probab=85.11 E-value=80 Score=36.45 Aligned_cols=146 Identities=11% Similarity=0.101 Sum_probs=69.0
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceeeecCC--CC--CCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCC
Q 047260 518 DGKLLASSGHD-------RKVVLWNMDTLQTESTPED--HK--SVVTDVRFRPNSSQLATASVD-----KSVRLWDAANP 581 (784)
Q Consensus 518 dg~~Lasgs~D-------g~I~IWd~~t~~~~~~l~~--h~--~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~ 581 (784)
++.+++.|+.+ ..+.+||+.+.+-...... .. .........-++.+++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34556666643 2477888876443221100 00 011111112255666777655 35788888875
Q ss_pred cceeeecc---CCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEeec------CC-eeEEEEecCCCE
Q 047260 582 NFCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCTHITK------GG-TAQVRFQPRIGQ 646 (784)
Q Consensus 582 ~~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~~------~~-v~~v~fsp~~~~ 646 (784)
........ .....-.+++.. +..+++.|+.++ .+..||+.+..-..... .. -..++ .-++..
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~-~~~gki 331 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE-VVQGKV 331 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE-EECCcE
Confidence 53221111 001111122222 344666666543 46778877654332211 00 11122 224556
Q ss_pred EEEEECC----CcEEEEECCCCeE
Q 047260 647 LLAAASD----KVVSIFDIETDRQ 666 (784)
Q Consensus 647 Ll~~s~D----g~I~IwDl~t~~~ 666 (784)
++.++.+ ..|.+||+.+.+-
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEE
Confidence 6666654 5689999987653
No 497
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.74 E-value=19 Score=43.15 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=48.6
Q ss_pred CceEEEEEe--cCCCEEEEEECCCeEEEEECCC--CceE--EecccCCceEEEEEeCCC---C---EEEEEECCCcEEEe
Q 047260 716 NQFHSCVFH--PSYSTLLVVGGISSLELWNMAE--NKSM--TIAAHENIISALAQSPVT---G---MVASASHDSSVKLW 783 (784)
Q Consensus 716 ~~I~sl~fs--pdg~~L~s~s~dg~I~Iwdl~~--~~~~--~~~~h~~~V~slafspdg---~---~LaSgs~DG~V~IW 783 (784)
..++.++++ ...++||+++....|.||-... .+.. ....|...|-+|+|-++. . .|++++-.|.|.+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 467899998 7777788888777777765443 2222 122466678899998754 2 77888899999887
Q ss_pred C
Q 047260 784 K 784 (784)
Q Consensus 784 d 784 (784)
+
T Consensus 244 ~ 244 (717)
T PF08728_consen 244 K 244 (717)
T ss_pred E
Confidence 5
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.70 E-value=70 Score=40.59 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCC---------
Q 047260 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAA--------- 579 (784)
Q Consensus 511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~--------- 579 (784)
..++..|||. |++|..+-.=+|+--..-..+.++. .....-.-++.+| +|.+.++ .-.+=+||.++
T Consensus 368 vala~a~DGS-l~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvS--dp~s~qv~rv~sl~~~d~~~ 444 (1899)
T KOG4659|consen 368 VALAYAPDGS-LIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVS--DPLSKQVWRVSSLEPQDSRN 444 (1899)
T ss_pred eeEEEcCCCc-EEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEec--CCCcceEEEeccCCcccccc
Q ss_pred -------CCcceeeeccCCCCC----------eEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------------------
Q 047260 580 -------NPNFCSQAYTGHSSP----------IMSLDFHPKKTDLFCFCDNDNEIQYWSIN------------------- 623 (784)
Q Consensus 580 -------~~~~~~~~~~~h~~~----------V~sl~~sp~~~~ll~sgs~dg~I~iwDl~------------------- 623 (784)
+++.|...-....+. ...|+|+.+|..+|+-+. .|++.|.+
T Consensus 445 N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t---~IR~iD~~giIstlig~~~~~~~p~~C 521 (1899)
T KOG4659|consen 445 NYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT---RIRVIDTTGIISTLIGTTPDQHPPRTC 521 (1899)
T ss_pred CeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc---EEEEeccCceEEEeccCCCCccCcccc
Q ss_pred --CCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEE------------------EEEEc
Q 047260 624 --PFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVN------------------YICWD 683 (784)
Q Consensus 624 --~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~------------------sl~~s 683 (784)
..+.....-.-.+.++++|-.+.|++-...=.++|-....-..+.--.-|-.-.. +|+++
T Consensus 522 ~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg 601 (1899)
T KOG4659|consen 522 AQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG 601 (1899)
T ss_pred ccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec
Q ss_pred CCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceE
Q 047260 684 TNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIIS 760 (784)
Q Consensus 684 pdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~ 760 (784)
++|.+.++-+|+ .=+|-.+.+...+..+.+...++.|..--.+ |.-++.-. ...+|-..+.
T Consensus 602 ~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~c----------------dcfs~~~~~At~A~lnsp~ 665 (1899)
T KOG4659|consen 602 TDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACC----------------DCFSLRDVAATQAKLNSPY 665 (1899)
T ss_pred CCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCC----------------ccccccchhhhccccCCcc
Q ss_pred EEEEeCCCCEEEEEECCCcEE
Q 047260 761 ALAQSPVTGMVASASHDSSVK 781 (784)
Q Consensus 761 slafspdg~~LaSgs~DG~V~ 781 (784)
++|++|||.+++.-..+-+|+
T Consensus 666 alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 666 ALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred eEEECCCCcEEEecCCchhhh
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.70 E-value=4.5 Score=39.92 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.6
Q ss_pred CceEEEEEeCCC------CEEEEEECCCcEEEeC
Q 047260 757 NIISALAQSPVT------GMVASASHDSSVKLWK 784 (784)
Q Consensus 757 ~~V~slafspdg------~~LaSgs~DG~V~IWd 784 (784)
..|..++|||-| -+|++...+|.|.||.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 479999999954 3899999999999984
No 500
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=83.61 E-value=1e+02 Score=36.56 Aligned_cols=246 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCCEEEE-----EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe-----EEEEcC
Q 047260 509 KVTCCHFSSDGKLLAS-----SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS-----VRLWDA 578 (784)
Q Consensus 509 ~V~~l~fspdg~~Las-----gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~-----I~IWdl 578 (784)
.+-.++.|||.+++|- |...-+++|-|+.++..+... -.+....++|.+|++.|+-...|.. |.-..+
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~--i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~ 207 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE--ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL 207 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh--hcccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Q ss_pred CC--CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeCC----CCeeEEeecCCeeEEEEecCCCEEEEE
Q 047260 579 AN--PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN--DNEIQYWSIN----PFLCTHITKGGTAQVRFQPRIGQLLAA 650 (784)
Q Consensus 579 ~~--~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~--dg~I~iwDl~----~~~~~~~~~~~v~~v~fsp~~~~Ll~~ 650 (784)
.+ ....+..-.....-..+|.-+..+.++++.++. ...+++.+.+ ..+++..-...+.--.-+-...+++..
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~s 287 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILS 287 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEe
Q ss_pred ECCC-cEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEE
Q 047260 651 ASDK-VVSIFDIET---DRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCV 722 (784)
Q Consensus 651 s~Dg-~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~ 722 (784)
..+| ..+|+.... ......+..|...+.--.++--..+|+..... .|++++..+++....-.........+.
T Consensus 288 N~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~ 367 (682)
T COG1770 288 NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLS 367 (682)
T ss_pred cCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhcccc
Q ss_pred Eec--CCCEEEEEECC----CeEEEEECCCCceEEecccC
Q 047260 723 FHP--SYSTLLVVGGI----SSLELWNMAENKSMTIAAHE 756 (784)
Q Consensus 723 fsp--dg~~L~s~s~d----g~I~Iwdl~~~~~~~~~~h~ 756 (784)
.++ +...|-..-+. .++.=+|+.+++...+....
T Consensus 368 ~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe 407 (682)
T COG1770 368 GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE 407 (682)
T ss_pred CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc
Done!