BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047264
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%), Gaps = 3/85 (3%)
Query: 51 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
+FSIVGYS +LTST++L++LFESWMLKH K Y++ +EK++R EIFKDNLK+ID N++
Sbjct: 45 DFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK- 103
Query: 111 QITSSYWLGLNEFSDMSHEEFKNKY 135
+SYWLGLN F+DMS++EFK KY
Sbjct: 104 --NNSYWLGLNVFADMSNDEFKEKY 126
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
Query: 51 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL 110
+FSIVGYS ++LTST++L++LF SWML H K YE+ +EKL+R EIFKDNL +ID N++
Sbjct: 1 DFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK- 59
Query: 111 QITSSYWLGLNEFSDMSHEEFKNKYLTGL 139
+SYWLGLNEF+D+S++EF KY+ L
Sbjct: 60 --NNSYWLGLNEFADLSNDEFNEKYVGSL 86
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 70 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARN--RELQITSSYWLGLNEFSDMS 127
+L+ W + K Y +++ HR I++ N+KHI N +L + + Y LGLN+F+DM+
Sbjct: 3 DLWHQWKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVT-YTLGLNQFTDMT 60
Query: 128 HEEFKNKYLTGLKPDDD 144
EEFK KYLT + D
Sbjct: 61 FEEFKAKYLTEMSRASD 77
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 70 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHE 129
+ F S+ + KSY + EEK R IFK+NL +I N Q SY L +N F D+S +
Sbjct: 23 DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHN---QQGYSYSLKMNHFGDLSRD 79
Query: 130 EFKNKYLTGLKPDDD 144
EF+ KYL G K +
Sbjct: 80 EFRRKYL-GFKKSRN 93
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 70 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITS-SYWLGLNEFSDMSH 128
E + + L H KSY S E++ R IFKDN+ I N + + +Y +N+F DMS
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 129 EEF 131
EEF
Sbjct: 85 EEF 87
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 59 PEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYW 117
PEE+ T +E W H K Y + +++ R I++ NLK+I N E + +Y
Sbjct: 3 PEEILDTH-----WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYE 57
Query: 118 LGLNEFSDMSHEEFKNKYLTGLK 140
L +N DM+ EE K +TGLK
Sbjct: 58 LAMNHLGDMTSEEVVQK-MTGLK 79
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 68 LVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDM 126
+ E +E++ + +SY + +E+ R +IF+ L+ + N + Q SY LG+N F+DM
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 127 SHEEFKNKYLTGL 139
+ EE K Y GL
Sbjct: 78 TPEEMK-AYTHGL 89
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 75 WMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFKN 133
W H + Y EE R +++ N+K I+ N+E + S+ + +N F DM+ EEF+
Sbjct: 11 WKAMHNRLYGMNEEGWRRA-VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR- 68
Query: 134 KYLTGLK 140
+ + GL+
Sbjct: 69 QVMNGLQ 75
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 62 LTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGL 120
LT L + W H + Y EE R +++ N+K I+ N+E + S+ + +
Sbjct: 2 LTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRA-VWEKNMKMIELHNQEYREGKHSFTMAM 60
Query: 121 NEFSDMSHEEFK 132
N F DM+ EEF+
Sbjct: 61 NAFGDMTSEEFR 72
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 78 KHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYW-LGLNEFSDMSHEEFKNKYL 136
K K+YE+ EE L R I+ ++ I+ NR+ + W +G+N +D++ EEF +
Sbjct: 16 KFDKNYEA-EEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSG 74
Query: 137 TGLKPD 142
+ P+
Sbjct: 75 KKVPPN 80
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 75 WMLKHGKSY-ESTEEKLHRLEIFKDNLKHIDARNRELQIT-SSYWLGLNEFSDMSHEE 130
W +GK Y E EE + RL I++ NLK + N E + SY LG+N DM+ EE
Sbjct: 15 WKKTYGKQYKEKNEEAVRRL-IWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEE 71
>pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant
pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant
Length = 372
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 74 SWMLKHGKSYESTEEKLHRLEI-----FK---------DNLKHIDARNRELQITSSYWLG 119
+W L G + E H LEI FK NLKH+ REL ++S +
Sbjct: 138 AWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQNLKHVVTIKRELGDSASVRVD 197
Query: 120 LNEFSDMSH 128
+N++ D S
Sbjct: 198 VNQYWDESQ 206
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 69 VELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSH 128
++ FE + KSY + E++ + F +++K++ + +N SD+S
Sbjct: 5 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG----------AINHLSDLSL 54
Query: 129 EEFKNKYL 136
+EFKN++L
Sbjct: 55 DEFKNRFL 62
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 41 RTLQGHEYDGEFSIVGYSPEELTSTDKLVELFESWMLKHG 80
R + DG + VGY PE D V+ W+ +HG
Sbjct: 520 RVILAGAIDGTNTEVGYKPELFDRDDNAVQFAVDWVKEHG 559
>pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
Length = 373
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 74 SWMLKHGKSYESTEEKLHRLEI-----FK---------DNLKHIDARNRELQITSSYWLG 119
+W L G + E H LEI FK +LKH+ REL ++S +
Sbjct: 139 AWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVD 198
Query: 120 LNEFSDMSH 128
+N++ D S
Sbjct: 199 VNQYWDESQ 207
>pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v
pdb|3MUC|B Chain B, Muconate Cycloisomerase Variant I54v
Length = 369
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 74 SWMLKHGKSYESTEEKLHRLEI-----FK---------DNLKHIDARNRELQITSSYWLG 119
+W L G + E H LEI FK +LKH+ REL ++S +
Sbjct: 136 AWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVD 195
Query: 120 LNEFSDMSH 128
+N++ D S
Sbjct: 196 VNQYWDESQ 204
>pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i
pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i
Length = 373
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 74 SWMLKHGKSYESTEEKLHRLEI-----FK---------DNLKHIDARNRELQITSSYWLG 119
+W L G + E H LEI FK +LKH+ REL ++S +
Sbjct: 139 AWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVD 198
Query: 120 LNEFSDMSH 128
+N++ D S
Sbjct: 199 VNQYWDESQ 207
>pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 369
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 74 SWMLKHGKSYESTEEKLHRLEI-----FK---------DNLKHIDARNRELQITSSYWLG 119
+W L G + E H LEI FK +LKH+ REL ++S +
Sbjct: 136 AWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVD 195
Query: 120 LNEFSDMSH 128
+N++ D S
Sbjct: 196 VNQYWDESQ 204
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 69 VELFESWMLKHGKSYESTEEK-----LHRLEIFKDNLKHIDARNREL 110
+ELF++W+L H + +EE+ LHRL L DA + E+
Sbjct: 68 LELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEM 114
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 27/103 (26%)
Query: 52 FSIVGYSPEELTSTDKLVELFESW---MLKHGKSYESTE---EKLHRLEIFKDNLKHIDA 105
I YSPE T K+VEL W +L H SY +K L+ ++N
Sbjct: 185 VGISSYSPER---TQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNN------ 235
Query: 106 RNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRR 148
+G F+ ++ KYL G+ P D R
Sbjct: 236 -----------GVGCIAFTPLAQGLLTGKYLNGI-PQDSRMHR 266
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 27/103 (26%)
Query: 52 FSIVGYSPEELTSTDKLVELFESW---MLKHGKSYESTE---EKLHRLEIFKDNLKHIDA 105
I YSPE T K+VEL W +L H SY +K L+ ++N
Sbjct: 165 VGISSYSPER---TQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNN------ 215
Query: 106 RNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFRR 148
+G F+ ++ KYL G+ P D R
Sbjct: 216 -----------GVGCIAFTPLAQGLLTGKYLNGI-PQDSRMHR 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,880,376
Number of Sequences: 62578
Number of extensions: 149749
Number of successful extensions: 489
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 52
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)