Query 047264
Match_columns 149
No_of_seqs 231 out of 1083
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08246 Inhibitor_I29: Cathep 99.8 5.8E-20 1.3E-24 118.4 7.3 58 72-131 1-58 (58)
2 PTZ00203 cathepsin L protease; 99.8 3.5E-18 7.7E-23 145.2 11.2 68 66-136 32-99 (348)
3 smart00848 Inhibitor_I29 Cathe 99.7 1.2E-17 2.5E-22 106.4 4.8 57 72-130 1-57 (57)
4 PTZ00200 cysteine proteinase; 99.6 7E-16 1.5E-20 135.0 9.8 73 63-140 117-189 (448)
5 PTZ00021 falcipain-2; Provisio 99.6 9.6E-16 2.1E-20 135.3 9.1 71 67-140 164-234 (489)
6 KOG1542 Cysteine proteinase Ca 99.5 1.5E-13 3.3E-18 116.1 8.5 70 68-140 67-136 (372)
7 KOG1543 Cysteine proteinase Ca 98.6 2E-07 4.2E-12 78.9 8.0 62 76-140 30-91 (325)
8 PF08127 Propeptide_C1: Peptid 92.5 0.12 2.6E-06 31.1 2.3 35 101-141 4-38 (41)
9 KOG1691 emp24/gp25L/p24 family 51.8 27 0.00058 28.3 4.2 18 4-21 161-180 (210)
10 PF07172 GRP: Glycine rich pro 50.6 17 0.00038 25.6 2.7 18 17-34 3-20 (95)
11 TIGR03042 PS_II_psbQ_bact phot 41.6 38 0.00082 25.7 3.5 18 23-40 5-22 (142)
12 PHA00407 phage lambda Rz1-like 36.9 65 0.0014 22.2 3.7 35 6-40 14-52 (84)
13 PF15234 LAT: Linker for activ 33.8 37 0.00081 27.2 2.4 20 19-38 12-31 (230)
14 PF06474 MLTD_N: MltD lipid at 33.0 62 0.0013 18.8 2.6 23 17-39 11-34 (34)
15 PF15102 TMEM154: TMEM154 prot 30.0 1.6E+02 0.0035 22.4 5.3 14 69-82 127-140 (146)
16 COG4259 Uncharacterized protei 29.0 65 0.0014 23.5 2.8 18 93-110 53-70 (121)
17 PF11671 Apis_Csd: Complementa 28.5 15 0.00032 27.7 -0.5 17 3-19 39-55 (146)
18 PF05391 Lsm_interact: Lsm int 27.6 51 0.0011 17.1 1.5 12 125-136 9-20 (21)
19 KOG3462 Predicted membrane pro 26.9 75 0.0016 22.7 2.8 32 10-41 39-71 (105)
20 TIGR03044 PS_II_psb27 photosys 25.3 1.2E+02 0.0027 22.8 3.8 17 66-82 66-82 (135)
21 TIGR03850 bind_CPR_0540 carboh 24.0 2E+02 0.0043 24.2 5.4 12 68-79 50-61 (437)
22 PTZ00459 mucin-associated surf 23.9 53 0.0011 27.5 1.8 15 21-35 7-21 (291)
23 PF10166 DUF2368: Uncharacteri 21.6 1.8E+02 0.004 21.6 4.2 21 3-23 32-52 (131)
24 PF09680 Tiny_TM_bacill: Prote 20.9 88 0.0019 16.7 1.7 15 24-38 7-22 (24)
25 COG3417 FlgN Collagen-binding 20.7 1.6E+02 0.0035 23.6 3.8 19 20-39 4-22 (200)
26 TIGR03302 OM_YfiO outer membra 20.0 78 0.0017 24.2 2.0 19 21-40 2-20 (235)
No 1
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.81 E-value=5.8e-20 Score=118.45 Aligned_cols=58 Identities=52% Similarity=0.835 Sum_probs=50.4
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHH
Q 047264 72 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEF 131 (149)
Q Consensus 72 F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF 131 (149)
|+.|+.+|+|.|.+..|..+|+.||++|++.|.+||+.. ..+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~--~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANG--NNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTT--SSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC--CCCeEEeCccccCcChhhC
Confidence 889999999999999999999999999999999999544 3799999999999999998
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=99.76 E-value=3.5e-18 Score=145.24 Aligned_cols=68 Identities=26% Similarity=0.465 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHh
Q 047264 66 DKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 136 (149)
Q Consensus 66 ~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~ 136 (149)
..+...|++|+.+|+|.|.+..|+.+|+.||.+|+++|++||++. .+|++|+|+|+|||+|||.+.|+
T Consensus 32 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~---~~~~lg~N~FaDlT~eEf~~~~l 99 (348)
T PTZ00203 32 TPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN---PHARFGITKFFDLSEAEFAARYL 99 (348)
T ss_pred cHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCeEEeccccccCCHHHHHHHhc
Confidence 345668999999999999998899999999999999999999875 69999999999999999998876
No 3
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.71 E-value=1.2e-17 Score=106.42 Aligned_cols=57 Identities=56% Similarity=0.933 Sum_probs=53.1
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHH
Q 047264 72 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEE 130 (149)
Q Consensus 72 F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eE 130 (149)
|+.|+.+|+|.|.+..|...|+.+|.+|++.|..||..+ ..+|++|+|+|||||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~--~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKN--DHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEecCcccccCCCCC
Confidence 688999999999999999999999999999999999865 379999999999999886
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=99.64 E-value=7e-16 Score=135.02 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264 63 TSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 140 (149)
Q Consensus 63 ~~~~~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~ 140 (149)
..+.++...|++|+++|+|.|.+..|+.+|+.||++|++.|++||.. .+|++|+|+|||||++||.+.|+ +++
T Consensus 117 ~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~----~~y~lgiN~FsDlT~eEF~~~~~-~~~ 189 (448)
T PTZ00200 117 KLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD----EPYSKEINKFSDLTEEEFRKLFP-VIK 189 (448)
T ss_pred cchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc----CCeEEeccccccCCHHHHHHHhc-cCC
Confidence 34556778999999999999999899999999999999999999963 58999999999999999999887 644
No 5
>PTZ00021 falcipain-2; Provisional
Probab=99.63 E-value=9.6e-16 Score=135.28 Aligned_cols=71 Identities=41% Similarity=0.643 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264 67 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 140 (149)
Q Consensus 67 ~~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~ 140 (149)
+....|++|+.+|+|.|.+.+|+.+|+.||.+|+++|++||++.. .+|++|+|+|+|||+|||++.|+ +++
T Consensus 164 e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~--~ty~lgiNqFsDlT~EEF~~~~l-~~~ 234 (489)
T PTZ00021 164 ENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKEN--VLYKKGMNRFGDLSFEEFKKKYL-TLK 234 (489)
T ss_pred HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--CCEEEeccccccCCHHHHHHHhc-ccc
Confidence 445689999999999999989999999999999999999997642 69999999999999999999887 654
No 6
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.5e-13 Score=116.14 Aligned_cols=70 Identities=43% Similarity=0.682 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264 68 LVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 140 (149)
Q Consensus 68 ~~~~F~~wk~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~ 140 (149)
....|..|+.+|+|+|.+.+|..+|+.||++|+..+++++.... .+..+|+|+|||||++||+++|+ +.+
T Consensus 67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~--gsA~yGvtqFSDlT~eEFkk~~l-~~~ 136 (372)
T KOG1542|consen 67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDP--GSAEYGVTQFSDLTEEEFKKIYL-GVK 136 (372)
T ss_pred hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCc--cccccCccchhhcCHHHHHHHhh-ccc
Confidence 47899999999999999999999999999999999999988763 37777999999999999999998 654
No 7
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2e-07 Score=78.93 Aligned_cols=62 Identities=42% Similarity=0.665 Sum_probs=54.9
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCC
Q 047264 76 MLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 140 (149)
Q Consensus 76 k~ky~K~Y~s~~E~~~R~~iF~~Nl~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~ 140 (149)
+.+|.+.|.+..+...|+.+|.+|++.|..||... ..+|.+|+|+|+|+|.+||++.+. +++
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~--~~~~~~g~n~~~d~~~ee~~~~~~-~~~ 91 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKY--VLSFLMGVNQFADLTTEEFKRKKT-GKK 91 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhh--ceeeeeccccccccchHHHHHhhc-ccc
Confidence 67777888777888999999999999999999975 279999999999999999999888 753
No 8
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=92.49 E-value=0.12 Score=31.14 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=21.2
Q ss_pred HHHHHhchhcccCcceeeecccCCCCCHHHHHHHHhcCCCC
Q 047264 101 KHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKP 141 (149)
Q Consensus 101 ~~I~~hN~~~~g~~sy~lglN~FaDLT~eEF~~~~~~g~~~ 141 (149)
++|+..|+.+ .+++-|.| |.+.|.+.++.+ + |...
T Consensus 4 e~I~~IN~~~---~tWkAG~N-F~~~~~~~ik~L-l-Gv~~ 38 (41)
T PF08127_consen 4 EFIDYINSKN---TTWKAGRN-FENTSIEYIKRL-L-GVLP 38 (41)
T ss_dssp HHHHHHHHCT----SEEE-----SSB-HHHHHHC-S--B-T
T ss_pred HHHHHHHcCC---CcccCCCC-CCCCCHHHHHHH-c-CCCC
Confidence 5788889875 79999999 999888888764 4 5443
No 9
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.78 E-value=27 Score=28.26 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=13.7
Q ss_pred HHHHHHHHHh--hhhhhhhH
Q 047264 4 REREREMKML--SSNCKLLL 21 (149)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~ 21 (149)
|+||.||... +.|++-..
T Consensus 161 r~REeemr~~nesTNsrv~~ 180 (210)
T KOG1691|consen 161 REREEEMRNTNESTNSRVAW 180 (210)
T ss_pred HHHHHHHHhhhhhhhhHHHH
Confidence 7899999887 77776543
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.58 E-value=17 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 047264 17 CKLLLRLSLCVSLLMIIC 34 (149)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~ 34 (149)
+|.+.-+.|+|++|+||+
T Consensus 3 SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 444332333344444444
No 11
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=41.57 E-value=38 Score=25.72 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhccCc
Q 047264 23 LSLCVSLLMIICIRCSSS 40 (149)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~ 40 (149)
.+++|++++.++++|++.
T Consensus 5 ~s~~Lv~~~~~Lvsc~~p 22 (142)
T TIGR03042 5 ASLLLVLLLTFLVSCSGP 22 (142)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 345555555667888753
No 12
>PHA00407 phage lambda Rz1-like protein
Probab=36.88 E-value=65 Score=22.16 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHH----hhccCc
Q 047264 6 REREMKMLSSNCKLLLRLSLCVSLLMIIC----IRCSSS 40 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 40 (149)
|+|-|+---|.-+.|-|.-.++.-++++| .+|+++
T Consensus 14 r~~s~~y~~stkktl~rwkaaLIGlllicv~tISGCaSe 52 (84)
T PHA00407 14 RLRSMKYRLSTKKTLRRWKAALIGLLLICVATISGCASE 52 (84)
T ss_pred HHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 56667777777777777766655555666 456554
No 13
>PF15234 LAT: Linker for activation of T-cells
Probab=33.82 E-value=37 Score=27.24 Aligned_cols=20 Identities=50% Similarity=0.871 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHhhcc
Q 047264 19 LLLRLSLCVSLLMIICIRCS 38 (149)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~ 38 (149)
+|+-+.++.+|++.+|+.|.
T Consensus 12 gLLlLplla~LlmALCvrCR 31 (230)
T PF15234_consen 12 GLLLLPLLAVLLMALCVRCR 31 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334555677778898886
No 14
>PF06474 MLTD_N: MltD lipid attachment motif; InterPro: IPR010511 This entry represents the MltD lipid attachment domain. It is a short N-terminal domain found in membrane-bound lytic murein transglycosylase D (Mltd).
Probab=32.95 E-value=62 Score=18.76 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=12.9
Q ss_pred hhhhHHHHHH-HHHHHHHHhhccC
Q 047264 17 CKLLLRLSLC-VSLLMIICIRCSS 39 (149)
Q Consensus 17 ~~~~~~~~~~-~~l~~~~~~~~~~ 39 (149)
...|.|..-+ ++.+.+.|+.|++
T Consensus 11 ~~altr~~q~~~l~l~a~l~GCQS 34 (34)
T PF06474_consen 11 SDALTRLAQISVLALGALLVGCQS 34 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHccccC
Confidence 4445565544 4444466788863
No 15
>PF15102 TMEM154: TMEM154 protein family
Probab=30.03 E-value=1.6e+02 Score=22.45 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCc
Q 047264 69 VELFESWMLKHGKS 82 (149)
Q Consensus 69 ~~~F~~wk~ky~K~ 82 (149)
...+++||..-||.
T Consensus 127 meeldkwm~s~n~n 140 (146)
T PF15102_consen 127 MEELDKWMNSMNRN 140 (146)
T ss_pred HHHHHhHHHhhccC
Confidence 45789999998875
No 16
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.02 E-value=65 Score=23.54 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhchhc
Q 047264 93 LEIFKDNLKHIDARNREL 110 (149)
Q Consensus 93 ~~iF~~Nl~~I~~hN~~~ 110 (149)
-+...+++..|...|...
T Consensus 53 ~~~le~~~ek~~ak~~~v 70 (121)
T COG4259 53 TAALEKYLEKIGAKNGAV 70 (121)
T ss_pred HHHHHHHHHHHhhcCCCC
Confidence 345667888888877654
No 17
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=28.53 E-value=15 Score=27.74 Aligned_cols=17 Identities=53% Similarity=0.612 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhhhhhhh
Q 047264 3 EREREREMKMLSSNCKL 19 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (149)
||||+||-++++|.+.+
T Consensus 39 EReRsRE~kiissls~~ 55 (146)
T PF11671_consen 39 ERERSRERKIISSLSNN 55 (146)
T ss_pred hhhhhcccccccccccc
Confidence 67888888888875543
No 18
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=27.57 E-value=51 Score=17.10 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHh
Q 047264 125 DMSHEEFKNKYL 136 (149)
Q Consensus 125 DLT~eEF~~~~~ 136 (149)
-+++++|+++++
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 468899998876
No 19
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=26.89 E-value=75 Score=22.70 Aligned_cols=32 Identities=38% Similarity=0.694 Sum_probs=20.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHH-HHHhhccCcc
Q 047264 10 MKMLSSNCKLLLRLSLCVSLLM-IICIRCSSSR 41 (149)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 41 (149)
+.|++|=|-+++|+-.|.-|.+ .+|++.+.++
T Consensus 39 lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R 71 (105)
T KOG3462|consen 39 LGMIFSMCGLMFRLKWCSWLALYCSCISFANSR 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999998877733332 2334444444
No 20
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=25.26 E-value=1.2e+02 Score=22.83 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhCCc
Q 047264 66 DKLVELFESWMLKHGKS 82 (149)
Q Consensus 66 ~~~~~~F~~wk~ky~K~ 82 (149)
.+..+.=.+|+.+|.+.
T Consensus 66 ~~ar~~indyvsrYRr~ 82 (135)
T TIGR03044 66 AEARQLINDYISRYRRR 82 (135)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45667788999999865
No 21
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=23.97 E-value=2e+02 Score=24.21 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHh
Q 047264 68 LVELFESWMLKH 79 (149)
Q Consensus 68 ~~~~F~~wk~ky 79 (149)
+....++|.++|
T Consensus 50 ~~~~~~~F~~~~ 61 (437)
T TIGR03850 50 WEEVVEAFEKSH 61 (437)
T ss_pred HHHHHHHHHHHC
Confidence 344556666654
No 22
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=23.86 E-value=53 Score=27.55 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHh
Q 047264 21 LRLSLCVSLLMIICI 35 (149)
Q Consensus 21 ~~~~~~~~l~~~~~~ 35 (149)
.|++|+|+|.+|-|.
T Consensus 7 GRVLLVCALCVLWCg 21 (291)
T PTZ00459 7 GRVLLVCALCVLWCG 21 (291)
T ss_pred chHHHHHHHHHHhcC
Confidence 489999999888885
No 23
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=21.60 E-value=1.8e+02 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhhhhhhhhHHH
Q 047264 3 EREREREMKMLSSNCKLLLRL 23 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (149)
..-|||+|+|.-+..+-++..
T Consensus 32 n~m~erq~A~qiA~~RE~~~w 52 (131)
T PF10166_consen 32 NQMRERQMAMQIAWARELFKW 52 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999888876644
No 24
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.91 E-value=88 Score=16.72 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH-hhcc
Q 047264 24 SLCVSLLMIIC-IRCS 38 (149)
Q Consensus 24 ~~~~~l~~~~~-~~~~ 38 (149)
+++++|++++. +.|+
T Consensus 7 alivVLFILLiIvG~s 22 (24)
T PF09680_consen 7 ALIVVLFILLIIVGAS 22 (24)
T ss_pred hhHHHHHHHHHHhcce
Confidence 44444443332 4443
No 25
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=20.66 E-value=1.6e+02 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHhhccC
Q 047264 20 LLRLSLCVSLLMIICIRCSS 39 (149)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~ 39 (149)
+.|.+.++++. ++..+|++
T Consensus 4 ~k~~~~il~~a-l~l~GCs~ 22 (200)
T COG3417 4 MKIYASILLLA-LFLSGCSS 22 (200)
T ss_pred HHHHHHHHHHH-HHHhhccc
Confidence 33444444444 44456663
No 26
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=20.05 E-value=78 Score=24.19 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhccCc
Q 047264 21 LRLSLCVSLLMIICIRCSSS 40 (149)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~ 40 (149)
.|++++++++ ++-++|+.-
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~ 20 (235)
T TIGR03302 2 LLLILLLALL-LLLAGCSSK 20 (235)
T ss_pred chHHHHHHHH-HHHhhccCC
Confidence 4566665555 344667754
Done!