BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047266
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 247 GYPRAFTLNEVEEITNELSDEHMIEYIDDRKIYHGIFQE-IPVIISSFSE-----NDERF 300
G + F+L E++ ++ S+++++ K+Y G + V + E + +F
Sbjct: 23 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQF 82
Query: 301 WSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEIN---LKVDDTARKLSWKA 357
+ + ++S H N++ L G+C + R L+ YP MA + + ++ L W
Sbjct: 83 QTEVEMISMAVHRNLLRLRGFCMTPTERLLV--YPYMANGSVASCLRERPESQPPLDWPK 140
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISHCCSAM 400
R IA L YLH+ C D I+H+ V ++N+++ A+
Sbjct: 141 RQRIALGSARGLAYLHDHC-DPKIIHRDVKAANILLDEEFEAV 182
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 247 GYPRAFTLNEVEEITNELSDEHMIEYIDDRKIYHGIFQEIPVI-ISSFSE-----NDERF 300
G + F+L E++ ++ +++++ K+Y G + ++ + E + +F
Sbjct: 15 GQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQF 74
Query: 301 WSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEIN---LKVDDTARKLSWKA 357
+ + ++S H N++ L G+C + R L+ YP MA + + ++ L W
Sbjct: 75 QTEVEMISMAVHRNLLRLRGFCMTPTERLLV--YPYMANGSVASCLRERPESQPPLDWPK 132
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISHCCSAM 400
R IA L YLH+ C D I+H+ V ++N+++ A+
Sbjct: 133 RQRIALGSARGLAYLHDHC-DPKIIHRDVKAANILLDEEFEAV 174
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 276 RKIYHGIFQEIPVIISS--FSENDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTD 333
R +HG + +++ +E F + I+ R+RH NIV +G N ++T+
Sbjct: 55 RAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114
Query: 334 YPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
Y +L L +L + R +A ++ + YLH + PIVH+++ S N+++
Sbjct: 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR--NPPIVHRNLKSPNLLV 172
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 20/164 (12%)
Query: 251 AFTLNEVEEITNELSDEHMIEYIDDRK-------IYHGIFQEIPVIISSFS--------E 295
+F+ E++ +TN DE I ++ +Y G V + + E
Sbjct: 14 SFSFYELKNVTNNF-DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEE 72
Query: 296 NDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSW 355
++F + ++++ +H N+V L+G+ G + L+ Y +L L D LSW
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132
Query: 356 KARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISHCCSA 399
R IAQ + +LHE +H+ + S+N+++ +A
Sbjct: 133 HMRCKIAQGAANGINFLHENHH----IHRDIKSANILLDEAFTA 172
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 276 RKIYHGIFQEIPVIISS--FSENDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTD 333
R +HG + +++ +E F + I+ R+RH NIV +G N ++T+
Sbjct: 55 RAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114
Query: 334 YPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
Y +L L +L + R +A ++ + YLH + PIVH+ + S N+++
Sbjct: 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR--NPPIVHRDLKSPNLLV 172
Query: 394 S 394
Sbjct: 173 D 173
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 20/164 (12%)
Query: 251 AFTLNEVEEITNELSDEHMIEYIDDRK-------IYHGIFQEIPVIISSFS--------E 295
+F+ E++ +TN DE I ++ +Y G V + + E
Sbjct: 14 SFSFYELKNVTNNF-DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEE 72
Query: 296 NDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSW 355
++F + ++++ +H N+V L+G+ G + L+ Y +L L D LSW
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132
Query: 356 KARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISHCCSA 399
R IAQ + +LHE +H+ + S+N+++ +A
Sbjct: 133 HMRCKIAQGAANGINFLHENHH----IHRDIKSANILLDEAFTA 172
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 251 AFTLNEVEEITNELSDEHMIEYIDDRK-------IYHGIFQEIPVIISSFS--------E 295
+F+ E++ +TN DE I ++ +Y G V + + E
Sbjct: 5 SFSFYELKNVTNNF-DERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEE 63
Query: 296 NDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSW 355
++F + + ++ +H N+V L+G+ G + L+ Y +L L D LSW
Sbjct: 64 LKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSW 123
Query: 356 KARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISHCCSA 399
R IAQ + +LHE +H+ + S+N+++ +A
Sbjct: 124 HXRCKIAQGAANGINFLHENHH----IHRDIKSANILLDEAFTA 163
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 20/164 (12%)
Query: 251 AFTLNEVEEITNELSDEHMIEYIDDRK-------IYHGIFQEIPVIISSFS--------E 295
+F+ E++ +TN DE I ++ +Y G V + + E
Sbjct: 8 SFSFYELKNVTNNF-DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEE 66
Query: 296 NDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSW 355
++F + ++++ +H N+V L+G+ G + L+ Y +L L D LSW
Sbjct: 67 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 126
Query: 356 KARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISHCCSA 399
R IAQ + +LHE +H+ + S+N+++ +A
Sbjct: 127 HMRCKIAQGAANGINFLHENHH----IHRDIKSANILLDEAFTA 166
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 298 ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKA 357
E F+ ++S++ H ++V G C G L+ ++ +L+ LK + + WK
Sbjct: 57 ESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKL 116
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+A+++ ++ +L E ++H +VC+ N+++
Sbjct: 117 E--VAKQLAAAMHFLEENT----LIHGNVCAKNILL 146
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 254 LNEVEEITNELSDEHMIEYIDDRKIYHGIFQEIPVI-----ISSFSENDERFWSMLMILS 308
L ++EE TN + +I + K+Y G+ ++ + S+ E F + + LS
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 309 RVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDT-ARKLSWKARWYIAQEIGG 367
RH ++V+L+G+C L+ Y L+ +L D +SW+ R I
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAAR 150
Query: 368 SLRYLHEECGDEPIVHQSVCSSNVVI 393
L YLH I+H+ V S N+++
Sbjct: 151 GLHYLHTRA----IIHRDVKSINILL 172
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 254 LNEVEEITNELSDEHMIEYIDDRKIYHGIFQEIPVI-----ISSFSENDERFWSMLMILS 308
L ++EE TN + +I + K+Y G+ ++ + S+ E F + + LS
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 309 RVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDT-ARKLSWKARWYIAQEIGG 367
RH ++V+L+G+C L+ Y L+ +L D +SW+ R I
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAAR 150
Query: 368 SLRYLHEECGDEPIVHQSVCSSNVVI 393
L YLH I+H+ V S N+++
Sbjct: 151 GLHYLHTRA----IIHRDVKSINILL 172
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 298 ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKA 357
E F+ ++S++ H ++V G C G L+ ++ +L+ LK + + WK
Sbjct: 57 ESFFEAASMMSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKNKNCINILWKL 116
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+A+++ ++ +L E ++H +VC+ N+++
Sbjct: 117 E--VAKQLAWAMHFLEENT----LIHGNVCAKNILL 146
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 291 SSFSENDERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL--------E 341
++ ++ E S L I+S + +H NIVNL+G C G ++T+Y C L E
Sbjct: 87 TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAE 146
Query: 342 INLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISH 395
+L +D R L + + + ++ + +L + +H+ V + NV++++
Sbjct: 147 ADLDKED-GRPLELRDLLHFSSQVAQGMAFL----ASKNCIHRDVAARNVLLTN 195
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 291 SSFSENDERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL--------E 341
++ ++ E S L I+S + +H NIVNL+G C G ++T+Y C L E
Sbjct: 79 TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAE 138
Query: 342 INLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISH 395
+L +D R L + + + ++ + +L + +H+ V + NV++++
Sbjct: 139 ADLDKED-GRPLELRDLLHFSSQVAQGMAFL----ASKNCIHRDVAARNVLLTN 187
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 235 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + +++S Y+A +I ++ YL ++ +H+++ + N
Sbjct: 295 TEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKN----FIHRNLAARNC 349
Query: 392 VI 393
++
Sbjct: 350 LV 351
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 284 QEIPVII----SSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMA 338
+++PV I + ++E R F S I+ + H NI+ L G G ++T+Y
Sbjct: 76 RDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENG 135
Query: 339 TLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L+ L+ D + + + + +G +RYL D VH+ + + NV++
Sbjct: 136 SLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYL----SDLGYVHRDLAARNVLV 184
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 284 QEIPVII----SSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMA 338
+++PV I + ++E R F S I+ + H NI+ L G G ++T+Y
Sbjct: 76 RDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENG 135
Query: 339 TLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L+ L+ D + + + + +G +RYL D VH+ + + NV++
Sbjct: 136 SLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYL----SDLGYVHRDLAARNVLV 184
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 33 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + +++S Y+A +I ++ YL ++ +H+ + + N
Sbjct: 93 TEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 147
Query: 392 VIS 394
++
Sbjct: 148 LVG 150
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 26 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 86 TEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 140
Query: 392 VIS 394
++
Sbjct: 141 LVG 143
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 26 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 86 TEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 140
Query: 392 VIS 394
++
Sbjct: 141 LVG 143
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 28 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 88 TEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 142
Query: 392 VIS 394
++
Sbjct: 143 LVG 145
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 28 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 88 TEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 142
Query: 392 VIS 394
++
Sbjct: 143 LVG 145
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 291 SSFSENDERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDT 349
++ ++ E S L I+S + +H NIVNL+G C G ++T+Y C L L+
Sbjct: 87 TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLR--RK 144
Query: 350 ARKLSWKARWYIAQEIGGSLRYLHEE---------CGDEPIVHQSVCSSNVVISH 395
+R L + IA + LH + +H+ V + NV++++
Sbjct: 145 SRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN 199
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 274 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 333
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+++ + N
Sbjct: 334 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRNLAARNC 388
Query: 392 VIS 394
++
Sbjct: 389 LVG 391
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 232 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 291
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+++ + N
Sbjct: 292 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRNLAARNC 346
Query: 392 VIS 394
++
Sbjct: 347 LVG 349
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 291 SSFSENDERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMA----------- 338
++ ++ E S L I+S + +H NIVNL+G C G ++T+Y C
Sbjct: 87 TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSR 146
Query: 339 TLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVISH 395
LE + LS + + + ++ + +L + +H+ V + NV++++
Sbjct: 147 VLETDPAFAIANSTLSTRDLLHFSSQVAQGMAFL----ASKNCIHRDVAARNVLLTN 199
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 29 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 88
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 89 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 143
Query: 392 VIS 394
++
Sbjct: 144 LVG 146
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 33 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 93 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 147
Query: 392 VIS 394
++
Sbjct: 148 LVG 150
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 30 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 89
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 90 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 144
Query: 392 VIS 394
++
Sbjct: 145 LVG 147
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 291 SSFSENDERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
++ ++ E S L I+S + +H NIVNL+G C G ++T+Y C L
Sbjct: 87 TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 137
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 291 SSFSENDERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
++ ++ E S L I+S + +H NIVNL+G C G ++T+Y C L
Sbjct: 72 TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 122
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 32 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 91
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 92 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 146
Query: 392 VIS 394
++
Sbjct: 147 LVG 149
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 33 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 93 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 147
Query: 392 VIS 394
++
Sbjct: 148 LVG 150
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 30 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 89
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL + + +H+ + + N
Sbjct: 90 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 144
Query: 392 VIS 394
++
Sbjct: 145 LVG 147
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 33 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 93 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 147
Query: 392 VIS 394
++
Sbjct: 148 LVG 150
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 30 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 89
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL + + +H+ + + N
Sbjct: 90 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 144
Query: 392 VIS 394
++
Sbjct: 145 LVG 147
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 41 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 100
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL + + +H+ + + N
Sbjct: 101 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 155
Query: 392 VIS 394
++
Sbjct: 156 LVG 158
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 277 KIYHGIFQ-EIPVIISSFSENDE----RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++YHG + E+ + + ++E F +M + RH N+V +G C S + ++
Sbjct: 48 QVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107
Query: 332 TD-------YPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQ 384
T Y + +I L V+ T + IAQEI + YLH + I+H+
Sbjct: 108 TSLCKGRTLYSVVRDAKIVLDVNKTRQ---------IAQEIVKGMGYLHAKG----ILHK 154
Query: 385 SVCSSNV 391
+ S NV
Sbjct: 155 DLKSKNV 161
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 28 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL + + +H+ + + N
Sbjct: 88 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 142
Query: 392 VIS 394
++
Sbjct: 143 LVG 145
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 28 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T++ L L+ + ++++ Y+A +I ++ YL + + +H+ + + N
Sbjct: 88 TEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 142
Query: 392 VIS 394
++
Sbjct: 143 LVG 145
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 28 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 88 IEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 142
Query: 392 VIS 394
++
Sbjct: 143 LVG 145
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 277 KIYHGIFQEIPVIISSFSENDERFW---SMLMILSRVRHCNIVNLVGYCC----SGANRF 329
+++ G +Q V + FS DE+ W + L +RH NI+ + S +
Sbjct: 23 EVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82
Query: 330 LLTDYPCMATL--EINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEEC----GDEPIVH 383
L+T Y M +L + L DT L I I L +LH E G I H
Sbjct: 83 LITHYHEMGSLYDYLQLTTLDTVSCLR------IVLSIASGLAHLHIEIFGTQGKPAIAH 136
Query: 384 QSVCSSNVVI---SHCCSA 399
+ + S N+++ CC A
Sbjct: 137 RDLKSKNILVKKNGQCCIA 155
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 277 KIYHGIFQEIPVIISSFSENDERFW---SMLMILSRVRHCNIVNLVGYCC----SGANRF 329
+++ G +Q V + FS DE+ W + L +RH NI+ + S +
Sbjct: 23 EVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82
Query: 330 LLTDYPCMATL--EINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEEC----GDEPIVH 383
L+T Y M +L + L DT L I I L +LH E G I H
Sbjct: 83 LITHYHEMGSLYDYLQLTTLDTVSCLR------IVLSIASGLAHLHIEIFGTQGKPAIAH 136
Query: 384 QSVCSSNVVI---SHCCSA 399
+ + S N+++ CC A
Sbjct: 137 RDLKSKNILVKKNGQCCIA 155
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 28 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 88 IEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 142
Query: 392 VIS 394
++
Sbjct: 143 LVG 145
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 26 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
++ L L+ + +++S Y+A +I ++ YL + + +H+ + + N
Sbjct: 86 IEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEK----KNFIHRDLAARNC 140
Query: 392 VIS 394
++
Sbjct: 141 LVG 143
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 277 KIYHGIFQEIPVIISSFSENDERFW---SMLMILSRVRHCNIVNLVGYCC----SGANRF 329
+++ G +Q V + FS DE+ W + L +RH NI+ + S +
Sbjct: 52 EVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 111
Query: 330 LLTDYPCMATL--EINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEEC----GDEPIVH 383
L+T Y M +L + L DT L I I L +LH E G I H
Sbjct: 112 LITHYHEMGSLYDYLQLTTLDTVSCLR------IVLSIASGLAHLHIEIFGTQGKPAIAH 165
Query: 384 QSVCSSNVVI---SHCCSA 399
+ + S N+++ CC A
Sbjct: 166 RDLKSKNILVKKNGQCCIA 184
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 288 VIISSFSENDERFWS---MLMILSRVRHCNIVNLVGYCCSGA----NRFLLTDYPCMATL 340
V + F D++ W + L ++H NI+ +G G + +L+T + +L
Sbjct: 50 VAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSL 109
Query: 341 EINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEEC-----GDEP-IVHQSVCSSNVVIS 394
LK A +SW +IA+ + L YLHE+ G +P I H+ + S NV++
Sbjct: 110 SDFLK----ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLK 165
Query: 395 HCCSA 399
+ +A
Sbjct: 166 NNLTA 170
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
+ + ++H NI+ L G C N L+ ++ L L + +++ A +I
Sbjct: 59 LFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL----SGKRIPPDILVNWAVQI 114
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+ YLH+E PI+H+ + SSN++I
Sbjct: 115 ARGMNYLHDEA-IVPIIHRDLKSSNILI 141
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 298 ERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
E S L +LS + H NIVNL+G C G ++T+Y C L
Sbjct: 87 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 130
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ +R + YI E+
Sbjct: 65 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSRFDEQRTATYIT-EL 121
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 122 ANALSY----CHSKRVIHRDIKPENLLLG 146
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 298 ERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
E S L +LS + H NIVNL+G C G ++T+Y C L
Sbjct: 94 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 137
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 47 EVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIV 106
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
T+Y L L+ + +++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 107 TEYMPYGNLLDYLR-ECNREEVTAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 161
Query: 392 VIS 394
++
Sbjct: 162 LVG 164
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 298 ERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
E S L +LS + H NIVNL+G C G ++T+Y C L
Sbjct: 89 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 132
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ +R + YI E+
Sbjct: 65 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSRFDEQRTATYIT-EL 121
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 122 ANALSY----CHSKRVIHRDIKPENLLLG 146
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 298 ERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
E S L +LS + H NIVNL+G C G ++T+Y C L
Sbjct: 94 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 137
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 279 YHG-IFQEIPVIISSFSENDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCM 337
+HG + +I ++ E + F + + +L + RH NI+ +GY N ++T +
Sbjct: 57 WHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD-NLAIVTQWCEG 115
Query: 338 ATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
++L +L V +T K IA++ + YLH + I+H+ + S+N+ +
Sbjct: 116 SSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAKN----IIHRDMKSNNIFL 165
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/123 (17%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 29 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 88
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 89 IEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 143
Query: 392 VIS 394
++
Sbjct: 144 LVG 146
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 298 ERFWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATL 340
E S L +LS + H NIVNL+G C G ++T+Y C L
Sbjct: 71 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 114
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/123 (17%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 277 KIYHGIFQE--IPVIISSFSEND---ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLL 331
++Y G++++ + V + + E+ E F ++ ++H N+V L+G C +++
Sbjct: 33 EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 92
Query: 332 TDYPCMATLEINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNV 391
++ L L+ + ++++ Y+A +I ++ YL ++ +H+ + + N
Sbjct: 93 IEFMTYGNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKN----FIHRDLAARNC 147
Query: 392 VIS 394
++
Sbjct: 148 LVG 150
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 87 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 143
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 144 ANALSY----CHSKRVIHRDIKPENLLL 167
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 87 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 143
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 144 ANALSY----CHSKRVIHRDIKPENLLL 167
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 78 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 134
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 135 ANALSY----CHSKRVIHRDIKPENLLL 158
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 62 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 118
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 119 ANALSY----CHSKRVIHRDIKPENLLL 142
>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|F Chain F, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 305
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 304 LMILSRVRHCNIVNLVG--YCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYI 361
+ +L R+RH N++ LV Y +++ +Y C+ ++ L R +A Y
Sbjct: 57 IQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEY-CVCGMQEMLDSVPEKRFPVCQAHGYF 115
Query: 362 AQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
Q I G L YLH + IVH+ + N++++
Sbjct: 116 CQLIDG-LEYLHSQG----IVHKDIKPGNLLLT 143
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 64 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 120
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 121 ANALSY----CHSKRVIHRDIKPENLLL 144
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKKVIHRDIKPENLLLG 142
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 64 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 120
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 121 ANALSY----CHSKRVIHRDIKPENLLLG 145
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 64 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 120
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 121 ANALSY----CHSKRVIHRDIKPENLLL 144
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLLG 142
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 64 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 120
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 121 ANALSY----CHSKRVIHRDIKPENLLLG 145
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 63 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 119
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 120 ANALSY----CHSKRVIHRDIKPENLLL 143
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 66 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 122
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 123 ANALSY----CHSKRVIHRDIKPENLLL 146
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 63 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 119
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 120 ANALSY----CHSKRVIHRDIKPENLLL 143
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLL 141
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 293 FSENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD---- 347
+SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 87 YSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRP 146
Query: 348 DTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 147 SQPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 189
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T + ++ ++ + YI E+
Sbjct: 60 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYIT-EL 116
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 117 ANALSY----CHSKRVIHRDIKPENLLLG 141
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLLG 142
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 66 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 122
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 123 ANALSY----CHSKRVIHRDIKPENLLL 146
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 62 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 118
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 119 ANALSY----CHSKRVIHRDIKPENLLL 142
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 62 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 118
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 119 ANALSY----CHSKRVIHRDIKPENLLL 142
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 64 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 120
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 121 ANALSY----CHSKRVIHRDIKPENLLLG 145
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLLG 142
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLL 141
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 66 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 122
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 123 ANALSY----CHSKRVIHRDIKPENLLL 146
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLLG 142
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 58 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 114
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 115 ANALSY----CHSKRVIHRDIKPENLLLG 139
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 65 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 121
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L Y C + ++H+ + N+++
Sbjct: 122 ANALSY----CHSKRVIHRDIKPENLLLG 146
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 61 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 117
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 118 ANALSY----CHSKRVIHRDIKPENLLL 141
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y + T+ L+ ++ + YI E+
Sbjct: 64 IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT-EL 120
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 121 ANALSY----CHSKRVIHRDIKPENLLL 144
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 239 WFPLSWRTGYPRAFTLNEVEEITNELSDEHMIEYIDDRKIYHGIFQEIPVIISSFSENDE 298
+F + P+ + +V E+ L D ++ Y + + + H + +IP + + +EN+
Sbjct: 234 FFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENET 293
Query: 299 RFWSML 304
F ++
Sbjct: 294 VFAPVI 299
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S++ H NIV +G RF+L + L+ L+
Sbjct: 74 SEQDELDFLMEALIISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 133
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 134 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 175
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S++ H NIV +G RF+L + L+ L+
Sbjct: 88 SEQDELDFLMEALIISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 147
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 148 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 189
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 284 QEIPVIISS----FSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMA 338
+E+PV I + ++E R F I+ + H NI++L G ++T+Y
Sbjct: 49 RELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENG 108
Query: 339 TLEINLKVDD---TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+L+ LK +D T +L R I ++YL D VH+ + + N++I+
Sbjct: 109 SLDTFLKKNDGQFTVIQLVGMLR-----GISAGMKYL----SDMGYVHRDLAARNILIN 158
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 298 ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKA 357
+ F + + +L + RH NI+ +GY + ++T + ++L +L +T K K
Sbjct: 65 QAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHASET--KFEMKK 121
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
IA++ + YLH + I+H+ + S+N+ +
Sbjct: 122 LIDIARQTARGMDYLHAKS----IIHRDLKSNNIFL 153
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 100 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 159
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 160 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 201
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 88 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPS 147
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 148 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 189
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 74 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 133
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 134 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 175
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 114 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 173
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 174 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 215
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 74 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 133
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 134 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 175
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARK 352
SE DE F +I+S+ H NIV +G RF+L + MA ++ + +T +
Sbjct: 73 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMEL--MAGGDLKSFLRETRPR 130
Query: 353 ------LSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 131 PSQPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 174
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 80 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 139
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 140 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 181
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 90 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 149
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 150 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 191
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 298 ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKA 357
+ F + + +L + RH NI+ +GY ++T + ++L +L +T K K
Sbjct: 65 QAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHASET--KFEMKK 121
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
IA++ + YLH + I+H+ + S+N+ +
Sbjct: 122 LIDIARQTARGMDYLHAKS----IIHRDLKSNNIFL 153
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 91 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 150
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 151 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 192
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y E+ ++ ++ + YI E+
Sbjct: 66 IQSHLRHPNILRLYGYFHDATRVYLILEYAPRG--EVYKELQKLSKFDEQRTATYIT-EL 122
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 123 ANALSY----CHSKRVIHRDIKPENLLL 146
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVD----D 348
SE DE F +I+S+ H NIV +G RF+L + L+ L+
Sbjct: 73 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPS 132
Query: 349 TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 133 QPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 174
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 294 SENDE-RFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARK 352
SE DE F +I+S+ H NIV +G RF+L + MA ++ + +T +
Sbjct: 65 SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLEL--MAGGDLKSFLRETRPR 122
Query: 353 ------LSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
L+ ++A++I +YL E +H+ + + N +++
Sbjct: 123 PSQPSSLAMLDLLHVARDIACGCQYLEENH----FIHRDIAARNCLLT 166
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 298 ERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKA 357
+ F + + +L + RH NI+ +GY ++T + ++L +L +T K K
Sbjct: 53 QAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHASET--KFEMKK 109
Query: 358 RWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
IA++ + YLH + I+H+ + S+N+ +
Sbjct: 110 LIDIARQTARGMDYLHAKS----IIHRDLKSNNIFL 141
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 306 ILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLKVDDTARKLSWKARWYIAQEI 365
I S +RH NI+ L GY +L+ +Y E+ ++ ++ + YI E+
Sbjct: 66 IQSHLRHPNILRLYGYFHDATRVYLILEYAPRG--EVYKELQKLSKFDEQRTATYIT-EL 122
Query: 366 GGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+L Y C + ++H+ + N+++
Sbjct: 123 ANALSY----CHSKRVIHRDIKPENLLL 146
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 286 IPVIISSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINL 344
I + ++E R F S I+ + H NI+ L G + +LT++ L+ L
Sbjct: 49 IKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFL 108
Query: 345 KVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+++D + + + + I +RYL E VH+ + + N++++
Sbjct: 109 RLNDG--QFTVIQLVGMLRGIASGMRYLAEMS----YVHRDLAARNILVN 152
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 294 SENDER-FWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLK------ 345
S++D R F L +L ++ H NI+NL+G C +L +Y L L+
Sbjct: 62 SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE 121
Query: 346 -------VDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+ TA LS + + A ++ + YL + + +H+++ + N+++
Sbjct: 122 TDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ----KQFIHRNLAARNILVG 173
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 294 SENDER-FWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLK------ 345
S++D R F L +L ++ H NI+NL+G C +L +Y L L+
Sbjct: 65 SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE 124
Query: 346 -------VDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+ TA LS + + A ++ + YL + + +H+ + + N+++
Sbjct: 125 TDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ----KQFIHRDLAARNILVG 176
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 294 SENDER-FWSMLMILSRV-RHCNIVNLVGYCCSGANRFLLTDYPCMATLEINLK------ 345
S++D R F L +L ++ H NI+NL+G C +L +Y L L+
Sbjct: 55 SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE 114
Query: 346 -------VDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+ TA LS + + A ++ + YL + + +H+ + + N+++
Sbjct: 115 TDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ----KQFIHRDLAARNILVG 166
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 286 IPVIISSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINL 344
I + + +++ R F S I+ + H NI++L G ++T+Y +L+ L
Sbjct: 62 IKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL 121
Query: 345 KVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+ +D + + + + IG ++YL D VH+ + + N++++
Sbjct: 122 RKNDG--RFTVIQLVGMLRGIGSGMKYLS----DMSAVHRDLAARNILVN 165
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 286 IPVIISSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINL 344
I + ++E R F S I+ + H NI+ L G + +LT++ L+ L
Sbjct: 47 IKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFL 106
Query: 345 KVDD---TARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVI 393
+++D T +L R I +RYL E VH+ + + N+++
Sbjct: 107 RLNDGQFTVIQLVGMLR-----GIASGMRYLAEMS----YVHRDLAARNILV 149
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 27 KSNVDALEWALKNVVRPRDAVVVLGVLYDIGRKNFSCFP----LNRGISISGIWERLEFS 82
K V +W N+ + ++++ ++G+LYD R+ +C P N+ I + +WE+
Sbjct: 92 KFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLK-MWEKGLAY 150
Query: 83 SGQGEVN 89
+G VN
Sbjct: 151 RAKGLVN 157
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 27 KSNVDALEWALKNVVRPRDAVVVLGVLYDIGRKNFSCFP----LNRGISISGIWERLEFS 82
K V +W N+ + ++++ ++G+LYD R+ +C P N+ I + +WE+
Sbjct: 92 KFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLK-MWEKGLAY 150
Query: 83 SGQGEVN 89
+G VN
Sbjct: 151 RAKGLVN 157
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 286 IPVIISSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINL 344
I + + +++ R F S I+ + H NI++L G ++T+Y +L+ L
Sbjct: 47 IKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL 106
Query: 345 KVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+ +D + + + + IG ++YL D VH+ + + N++++
Sbjct: 107 RKNDG--RFTVIQLVGMLRGIGSGMKYLS----DMSYVHRDLAARNILVN 150
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 286 IPVIISSFSENDER-FWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATLEINL 344
I + + +++ R F S I+ + H NI++L G ++T+Y +L+ L
Sbjct: 41 IKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL 100
Query: 345 KVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQSVCSSNVVIS 394
+ +D + + + + IG ++YL D VH+ + + N++++
Sbjct: 101 RKNDG--RFTVIQLVGMLRGIGSGMKYLS----DMSYVHRDLAARNILVN 144
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 278 IYHGIFQ------EIPVIISSFSEN-----DERFWSMLMILSRVRHCNIVNLVGYCCSGA 326
+Y GI+ +IPV I +E + F +I++ + H ++V L+G C S
Sbjct: 54 VYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT 113
Query: 327 NRFLLTDYPCMATLE-INLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQS 385
+ + P LE ++ D+ +L W + +I + YL E +VH+
Sbjct: 114 IQLVTQLMPHGCLLEYVHEHKDNIGSQLL--LNWCV--QIAKGMMYLEERR----LVHRD 165
Query: 386 VCSSNVVIS 394
+ + NV++
Sbjct: 166 LAARNVLVK 174
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 26/123 (21%)
Query: 294 SENDERFWSMLMILSRVRHCNIVNLVGYCCSGANRFLLTDYPCMATL------------- 340
SE + + M+ H NIVNL+G C +L+ +Y C L
Sbjct: 90 SEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSE 149
Query: 341 -------EINLKVDDTARKLSWKARWYIAQEIGGSLRYLH-EECGDEPIVHQSVCSSNVV 392
+ L+ ++ L+++ A ++ + +L + C VH+ + + NV+
Sbjct: 150 DEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSC-----VHRDLAARNVL 204
Query: 393 ISH 395
++H
Sbjct: 205 VTH 207
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 278 IYHGIFQ------EIPVIISSFSEN-----DERFWSMLMILSRVRHCNIVNLVGYCCSGA 326
+Y GI+ +IPV I +E + F +I++ + H ++V L+G C S
Sbjct: 31 VYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT 90
Query: 327 NRFLLTDYPCMATLE-INLKVDDTARKLSWKARWYIAQEIGGSLRYLHEECGDEPIVHQS 385
+ + P LE ++ D+ +L W + +I + YL E +VH+
Sbjct: 91 IQLVTQLMPHGCLLEYVHEHKDNIGSQLL--LNWCV--QIAKGMMYLEE----RRLVHRD 142
Query: 386 VCSSNVVIS 394
+ + NV++
Sbjct: 143 LAARNVLVK 151
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 288 VIISSFSENDERFW-SMLMILSR--VRHCNIVNLVGYCCSGANR----FLLTDYPCMATL 340
V + F D++ W S I S ++H N++ + G+N +L+T + +L
Sbjct: 41 VAVKIFPLQDKQSWQSEREIFSTPGMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSL 100
Query: 341 EINLKVDDTARKLSWKARWYIAQEIGGSLRYLHEEC------GDEP-IVHQSVCSSNVVI 393
LK ++W ++A+ + L YLHE+ G +P I H+ S NV++
Sbjct: 101 TDYLK----GNIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLL 156
Query: 394 SHCCSAM 400
+A+
Sbjct: 157 KSDLTAV 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,918,202
Number of Sequences: 62578
Number of extensions: 477518
Number of successful extensions: 1289
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 126
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)