Query 047269
Match_columns 217
No_of_seqs 272 out of 1395
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 7.9E-37 2.7E-41 230.0 10.8 105 6-111 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.4E-36 4.9E-41 229.7 9.6 104 9-113 1-104 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 1E-35 3.4E-40 232.6 11.7 107 9-116 2-108 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1.2E-35 4.1E-40 231.1 9.9 106 4-110 22-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 2.9E-35 9.9E-40 228.6 10.8 104 5-110 7-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.6E-33 1.2E-37 224.5 9.8 107 4-111 53-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.3E-32 8E-37 219.7 6.6 104 6-110 3-107 (159)
8 2dim_A Cell division cycle 5-l 99.9 7.2E-24 2.5E-28 148.3 3.0 67 3-70 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.9 1.2E-22 4.1E-27 157.6 5.7 75 35-110 1-76 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 1.3E-20 4.5E-25 158.6 7.3 106 4-110 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 2.3E-19 7.9E-24 126.3 4.8 59 48-107 9-67 (73)
12 2d9a_A B-MYB, MYB-related prot 99.8 2.4E-19 8.3E-24 121.5 4.7 58 3-61 2-59 (60)
13 2juh_A Telomere binding protei 99.8 1.9E-19 6.6E-24 138.0 4.2 82 4-86 12-103 (121)
14 1gvd_A MYB proto-oncogene prot 99.8 3.9E-19 1.3E-23 117.1 4.1 52 7-59 1-52 (52)
15 1guu_A C-MYB, MYB proto-oncoge 99.7 5.1E-19 1.8E-23 116.5 3.2 52 7-59 1-52 (52)
16 2cu7_A KIAA1915 protein; nucle 99.7 3.4E-18 1.1E-22 120.1 7.4 58 56-113 3-60 (72)
17 2din_A Cell division cycle 5-l 99.7 2.1E-18 7.3E-23 119.0 5.9 60 55-115 2-61 (66)
18 2roh_A RTBP1, telomere binding 99.7 1.9E-18 6.6E-23 132.6 5.9 78 5-83 27-114 (122)
19 1ity_A TRF1; helix-turn-helix, 99.7 2E-18 6.9E-23 120.2 4.2 64 3-66 4-68 (69)
20 2d9a_A B-MYB, MYB-related prot 99.7 8.6E-18 2.9E-22 113.8 5.3 55 57-111 3-58 (60)
21 1x41_A Transcriptional adaptor 99.7 6.4E-18 2.2E-22 114.6 4.2 56 4-60 3-58 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 2.6E-17 8.8E-22 108.3 5.9 50 60-109 1-51 (52)
23 3sjm_A Telomeric repeat-bindin 99.7 8E-18 2.7E-22 115.7 2.8 56 6-61 8-64 (64)
24 1gvd_A MYB proto-oncogene prot 99.7 5E-17 1.7E-21 107.0 6.0 50 60-109 1-51 (52)
25 2dim_A Cell division cycle 5-l 99.7 7.1E-17 2.4E-21 112.6 5.7 56 57-112 4-60 (70)
26 1w0t_A Telomeric repeat bindin 99.7 9.7E-17 3.3E-21 106.1 5.9 49 61-109 1-52 (53)
27 1ity_A TRF1; helix-turn-helix, 99.7 1.5E-16 5.1E-21 110.7 6.8 59 55-113 3-64 (69)
28 1x41_A Transcriptional adaptor 99.7 1.2E-16 4.2E-21 108.2 5.8 53 57-109 3-56 (60)
29 2din_A Cell division cycle 5-l 99.6 1.6E-17 5.6E-22 114.6 0.5 57 4-63 4-60 (66)
30 2elk_A SPCC24B10.08C protein; 99.6 8.6E-17 2.9E-21 108.3 3.8 52 5-56 5-56 (58)
31 1w0t_A Telomeric repeat bindin 99.6 6.3E-17 2.2E-21 106.9 3.1 50 8-57 1-51 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.6 4.9E-17 1.7E-21 114.8 2.3 61 3-64 2-67 (75)
33 3sjm_A Telomeric repeat-bindin 99.6 3.4E-16 1.2E-20 107.5 6.1 52 60-111 9-63 (64)
34 2cu7_A KIAA1915 protein; nucle 99.6 1.2E-16 4.3E-21 112.0 1.9 58 3-62 3-60 (72)
35 2yum_A ZZZ3 protein, zinc fing 99.6 5.4E-16 1.9E-20 109.4 5.1 56 57-112 3-64 (75)
36 2elk_A SPCC24B10.08C protein; 99.6 1.1E-15 3.6E-20 103.0 6.0 50 58-107 5-56 (58)
37 2ltp_A Nuclear receptor corepr 99.4 1.4E-16 4.9E-21 116.2 0.0 56 55-110 9-64 (89)
38 2llk_A Cyclin-D-binding MYB-li 99.5 3.3E-15 1.1E-19 105.0 4.0 55 4-62 18-72 (73)
39 2aje_A Telomere repeat-binding 99.5 7.9E-15 2.7E-19 109.8 4.9 77 4-81 8-94 (105)
40 2ckx_A NGTRF1, telomere bindin 99.5 1.2E-14 4.2E-19 104.5 5.4 69 10-79 1-79 (83)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.5 1.9E-14 6.6E-19 101.1 5.9 52 58-109 14-69 (73)
42 3zqc_A MYB3; transcription-DNA 99.5 5.3E-15 1.8E-19 114.9 2.9 82 4-91 49-130 (131)
43 2yus_A SWI/SNF-related matrix- 99.5 1.2E-14 4.1E-19 103.7 3.6 48 6-55 15-62 (79)
44 3osg_A MYB21; transcription-DN 99.5 5.8E-14 2E-18 108.4 6.6 56 57-112 6-61 (126)
45 1gv2_A C-MYB, MYB proto-oncoge 99.5 6.9E-14 2.4E-18 104.4 6.0 51 60-110 2-53 (105)
46 2yus_A SWI/SNF-related matrix- 99.5 3.8E-14 1.3E-18 101.1 4.2 48 59-106 15-62 (79)
47 2ltp_A Nuclear receptor corepr 99.2 7.7E-15 2.6E-19 107.0 0.0 53 4-58 11-63 (89)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3E-14 1E-18 100.2 2.4 53 4-57 13-68 (73)
49 1x58_A Hypothetical protein 49 99.4 3E-13 1E-17 91.4 7.0 50 60-109 6-58 (62)
50 2ckx_A NGTRF1, telomere bindin 99.4 5E-13 1.7E-17 96.1 7.5 49 63-111 1-54 (83)
51 2k9n_A MYB24; R2R3 domain, DNA 99.4 2.2E-13 7.4E-18 102.2 5.3 49 62-110 1-50 (107)
52 2aje_A Telomere repeat-binding 99.4 1.4E-12 4.8E-17 97.6 8.1 55 57-111 8-67 (105)
53 1ign_A Protein (RAP1); RAP1,ye 99.4 3.7E-13 1.3E-17 113.4 5.0 55 58-112 4-64 (246)
54 2juh_A Telomere binding protei 99.4 7E-13 2.4E-17 101.5 6.1 55 56-110 11-70 (121)
55 2cjj_A Radialis; plant develop 99.3 1.9E-12 6.4E-17 95.0 6.0 51 61-111 7-61 (93)
56 2roh_A RTBP1, telomere binding 99.3 3.8E-12 1.3E-16 97.6 6.4 54 57-110 26-84 (122)
57 2cjj_A Radialis; plant develop 99.2 4.1E-12 1.4E-16 93.1 2.0 49 7-56 6-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 6.3E-11 2.2E-15 80.2 5.6 47 61-107 11-57 (61)
59 3hm5_A DNA methyltransferase 1 99.1 1.4E-10 4.9E-15 84.7 6.5 66 44-113 16-86 (93)
60 1x58_A Hypothetical protein 49 99.0 1.5E-10 5.2E-15 78.2 3.6 50 6-57 5-57 (62)
61 2eqr_A N-COR1, N-COR, nuclear 99.0 2.4E-10 8.4E-15 77.3 3.5 48 7-56 10-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 99.0 6.1E-10 2.1E-14 77.8 5.5 50 59-109 5-58 (72)
63 1wgx_A KIAA1903 protein; MYB D 98.9 1.9E-09 6.5E-14 75.3 5.5 52 61-112 7-62 (73)
64 2iw5_B Protein corest, REST co 98.9 2.2E-09 7.6E-14 89.7 5.9 49 61-109 132-180 (235)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.9 8.3E-10 2.9E-14 77.1 2.6 50 5-56 4-56 (72)
66 2xag_B REST corepressor 1; ami 98.8 3.6E-09 1.2E-13 97.5 4.7 45 63-107 381-425 (482)
67 1wgx_A KIAA1903 protein; MYB D 98.7 3.6E-09 1.2E-13 74.0 2.7 50 8-58 7-59 (73)
68 1fex_A TRF2-interacting telome 98.7 7.7E-09 2.6E-13 69.5 2.6 48 9-57 2-58 (59)
69 2iw5_B Protein corest, REST co 98.6 1.3E-08 4.6E-13 85.0 3.1 49 7-57 131-179 (235)
70 1fex_A TRF2-interacting telome 98.5 1.2E-07 4.2E-12 63.5 4.9 47 62-108 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.4 4.8E-07 1.6E-11 79.1 8.4 99 10-109 111-275 (304)
72 4eef_G F-HB80.4, designed hema 98.4 4.8E-08 1.6E-12 67.9 0.7 45 8-53 19-66 (74)
73 2yqk_A Arginine-glutamic acid 98.3 1.2E-06 4E-11 59.4 6.6 49 58-106 5-54 (63)
74 4eef_G F-HB80.4, designed hema 98.3 1.1E-07 3.6E-12 66.2 0.7 43 62-104 20-66 (74)
75 1ug2_A 2610100B20RIK gene prod 98.3 9E-07 3.1E-11 63.7 5.0 47 64-110 35-84 (95)
76 4iej_A DNA methyltransferase 1 98.2 4.4E-06 1.5E-10 60.7 6.6 59 50-112 22-85 (93)
77 2lr8_A CAsp8-associated protei 97.5 2.6E-07 8.8E-12 63.1 0.0 45 64-109 16-63 (70)
78 2yqk_A Arginine-glutamic acid 98.1 1.5E-06 5.1E-11 58.9 3.7 50 4-55 4-54 (63)
79 4a69_C Nuclear receptor corepr 97.9 1.3E-05 4.3E-10 58.6 5.6 45 62-106 43-87 (94)
80 2crg_A Metastasis associated p 97.9 1.9E-05 6.6E-10 54.5 6.0 44 62-105 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.9 4.2E-06 1.4E-10 77.2 3.1 47 8-56 379-425 (482)
82 3hm5_A DNA methyltransferase 1 97.8 8.3E-06 2.8E-10 59.4 2.7 49 7-56 28-80 (93)
83 2crg_A Metastasis associated p 97.8 1.3E-05 4.5E-10 55.3 2.8 45 8-54 7-52 (70)
84 4a69_C Nuclear receptor corepr 97.8 1.2E-05 4.1E-10 58.7 2.7 44 9-54 43-86 (94)
85 2ebi_A DNA binding protein GT- 97.5 7.5E-05 2.6E-09 53.2 3.8 52 62-113 4-69 (86)
86 1ug2_A 2610100B20RIK gene prod 97.5 7.9E-05 2.7E-09 53.6 3.7 44 10-54 34-79 (95)
87 2y9y_A Imitation switch protei 97.5 0.00021 7.2E-09 63.9 6.9 102 10-112 124-294 (374)
88 4b4c_A Chromodomain-helicase-D 97.4 0.00051 1.7E-08 56.4 8.0 100 8-108 6-195 (211)
89 2ebi_A DNA binding protein GT- 97.1 7.9E-05 2.7E-09 53.0 0.4 50 7-56 2-63 (86)
90 2lr8_A CAsp8-associated protei 96.2 6.6E-05 2.3E-09 51.2 0.0 44 11-56 16-61 (70)
91 4iej_A DNA methyltransferase 1 95.9 0.0044 1.5E-07 44.8 2.8 49 7-56 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.3 0.049 1.7E-06 36.6 6.1 47 61-107 6-57 (64)
93 1ofc_X ISWI protein; nuclear p 95.0 0.05 1.7E-06 47.3 6.8 49 62-110 110-159 (304)
94 4b4c_A Chromodomain-helicase-D 94.8 0.027 9.3E-07 45.9 4.4 29 9-37 134-162 (211)
95 2xb0_X Chromo domain-containin 94.2 0.027 9.3E-07 48.2 3.2 28 10-37 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 93.9 0.051 1.8E-06 36.5 3.5 51 5-55 3-56 (64)
97 2xb0_X Chromo domain-containin 83.7 2.5 8.4E-05 36.0 6.6 47 62-108 3-54 (270)
98 2rq5_A Protein jumonji; develo 70.4 1.6 5.5E-05 32.7 1.4 46 30-78 64-113 (121)
99 2y9y_A Imitation switch protei 69.5 9.8 0.00034 33.8 6.5 45 63-107 124-170 (374)
100 2li6_A SWI/SNF chromatin-remod 68.4 1.6 5.5E-05 32.2 1.0 39 19-58 53-98 (116)
101 2li6_A SWI/SNF chromatin-remod 66.1 4.3 0.00015 29.8 3.0 38 72-109 53-98 (116)
102 1ig6_A MRF-2, modulator recogn 64.6 2.7 9.4E-05 30.4 1.7 40 19-58 37-87 (107)
103 2lm1_A Lysine-specific demethy 61.9 11 0.00039 26.9 4.6 38 72-109 48-97 (107)
104 2jrz_A Histone demethylase jar 61.4 9.7 0.00033 27.9 4.2 38 72-109 44-93 (117)
105 2jrz_A Histone demethylase jar 59.1 4.2 0.00014 29.9 1.8 39 19-57 44-92 (117)
106 2o8x_A Probable RNA polymerase 58.1 13 0.00044 23.4 4.0 44 65-110 16-59 (70)
107 2eqy_A RBP2 like, jumonji, at 57.4 13 0.00045 27.4 4.3 39 72-110 46-96 (122)
108 2cxy_A BAF250B subunit, HBAF25 56.6 14 0.00047 27.4 4.4 39 72-110 55-105 (125)
109 1c20_A DEAD ringer protein; DN 56.4 4.6 0.00016 30.2 1.7 40 19-58 56-106 (128)
110 1kkx_A Transcription regulator 55.2 6.8 0.00023 29.2 2.4 38 73-110 53-98 (123)
111 1ku3_A Sigma factor SIGA; heli 54.0 17 0.00057 23.6 4.1 44 65-110 11-58 (73)
112 2cxy_A BAF250B subunit, HBAF25 52.8 5.6 0.00019 29.6 1.6 39 19-57 55-103 (125)
113 2jxj_A Histone demethylase jar 51.9 5.8 0.0002 27.9 1.5 39 19-57 40-88 (96)
114 2kk0_A AT-rich interactive dom 51.4 5 0.00017 30.7 1.2 40 19-58 68-118 (145)
115 2rq5_A Protein jumonji; develo 51.4 15 0.00051 27.3 3.8 78 7-110 5-97 (121)
116 1c20_A DEAD ringer protein; DN 50.9 19 0.00065 26.6 4.4 40 71-110 55-107 (128)
117 2eqy_A RBP2 like, jumonji, at 50.7 6.8 0.00023 29.0 1.8 38 19-56 46-93 (122)
118 2p7v_B Sigma-70, RNA polymeras 47.3 18 0.00061 23.1 3.3 30 80-110 24-53 (68)
119 3cz6_A DNA-binding protein RAP 46.4 13 0.00046 29.2 2.9 17 5-21 110-126 (168)
120 2kk0_A AT-rich interactive dom 46.4 23 0.0008 26.9 4.3 38 72-109 68-118 (145)
121 2jvw_A Uncharacterized protein 45.9 7 0.00024 27.4 1.1 45 17-74 18-69 (88)
122 1k78_A Paired box protein PAX5 42.7 94 0.0032 22.5 7.4 69 9-81 30-107 (149)
123 3hug_A RNA polymerase sigma fa 41.2 32 0.0011 23.2 4.0 39 70-109 42-80 (92)
124 3i4p_A Transcriptional regulat 40.3 7.7 0.00026 29.6 0.6 91 15-108 3-125 (162)
125 2k27_A Paired box protein PAX- 39.9 1.1E+02 0.0036 22.6 7.2 67 10-81 24-100 (159)
126 1x3u_A Transcriptional regulat 39.2 50 0.0017 21.2 4.6 43 65-110 17-59 (79)
127 3c57_A Two component transcrip 37.2 49 0.0017 22.6 4.5 44 64-110 27-70 (95)
128 3ulq_B Transcriptional regulat 35.9 63 0.0022 22.0 4.9 46 62-110 27-72 (90)
129 3i4p_A Transcriptional regulat 34.7 29 0.00099 26.2 3.2 43 68-111 3-46 (162)
130 2yqf_A Ankyrin-1; death domain 34.0 55 0.0019 23.3 4.5 35 66-101 14-48 (111)
131 2q1z_A RPOE, ECF SIGE; ECF sig 33.9 45 0.0015 24.9 4.2 29 80-109 150-178 (184)
132 3e7l_A Transcriptional regulat 33.3 53 0.0018 20.7 3.9 34 68-102 19-52 (63)
133 2p1m_A SKP1-like protein 1A; F 33.1 22 0.00074 27.3 2.2 36 33-76 119-154 (160)
134 1tty_A Sigma-A, RNA polymerase 32.8 42 0.0014 22.5 3.5 30 80-110 37-66 (87)
135 1fse_A GERE; helix-turn-helix 32.5 55 0.0019 20.5 3.9 45 63-110 10-54 (74)
136 1je8_A Nitrate/nitrite respons 32.5 53 0.0018 21.8 3.9 44 64-110 21-64 (82)
137 1u78_A TC3 transposase, transp 30.7 1.4E+02 0.0048 20.9 8.6 89 9-103 4-100 (141)
138 1or7_A Sigma-24, RNA polymeras 30.5 70 0.0024 23.9 4.8 28 81-109 156-183 (194)
139 1ntc_A Protein (nitrogen regul 29.6 77 0.0026 21.5 4.5 36 67-103 50-85 (91)
140 2dbb_A Putative HTH-type trans 29.1 92 0.0031 22.7 5.2 43 68-111 9-52 (151)
141 2jpc_A SSRB; DNA binding prote 29.0 78 0.0027 19.1 4.1 38 71-110 4-41 (61)
142 1xsv_A Hypothetical UPF0122 pr 28.2 89 0.003 22.2 4.8 39 70-109 30-68 (113)
143 2of5_H Leucine-rich repeat and 27.3 48 0.0016 24.0 3.1 31 70-101 13-43 (118)
144 2o71_A Death domain-containing 27.1 60 0.0021 23.6 3.7 28 72-100 26-53 (115)
145 2rnj_A Response regulator prot 26.3 63 0.0021 21.7 3.5 43 65-110 30-72 (91)
146 2of5_A Death domain-containing 25.9 57 0.002 23.6 3.3 28 72-100 26-53 (114)
147 2e1c_A Putative HTH-type trans 25.6 77 0.0026 24.2 4.3 43 68-111 27-70 (171)
148 1wxp_A THO complex subunit 1; 25.5 91 0.0031 22.1 4.4 30 71-101 19-48 (110)
149 2e1c_A Putative HTH-type trans 25.3 29 0.00098 26.7 1.7 40 15-56 27-66 (171)
150 1p4w_A RCSB; solution structur 23.9 1.8E+02 0.006 20.1 5.6 46 62-110 32-77 (99)
151 1g2h_A Transcriptional regulat 23.6 42 0.0014 21.2 2.0 32 11-44 17-48 (61)
152 2cyy_A Putative HTH-type trans 23.0 1.1E+02 0.0036 22.5 4.5 42 69-111 8-50 (151)
153 3mzy_A RNA polymerase sigma-H 22.5 90 0.0031 22.3 4.0 29 80-109 123-151 (164)
154 1rp3_A RNA polymerase sigma fa 21.9 1.1E+02 0.0039 23.4 4.7 29 80-109 202-230 (239)
155 3v7d_A Suppressor of kinetocho 21.7 34 0.0012 26.5 1.5 35 32-74 126-160 (169)
156 3cz6_A DNA-binding protein RAP 20.1 60 0.0021 25.4 2.5 27 48-74 99-126 (168)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=7.9e-37 Score=229.97 Aligned_cols=105 Identities=47% Similarity=0.859 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 047269 6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWS 85 (217)
Q Consensus 6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~ 85 (217)
++++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 86 LIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 86 ~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.4e-36 Score=229.66 Aligned_cols=104 Identities=28% Similarity=0.519 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 047269 9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIA 88 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia 88 (217)
||+||+|||++|+++|..||.++|..||..|| +|++.||++||.++|+|.+++|+||+|||.+|+.+|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269 89 GRVPGRTDNQVKNHWNTHLCKKLGI 113 (217)
Q Consensus 89 ~~lpgRT~~q~k~Rw~~~l~k~~~~ 113 (217)
+.|||||+++|++||+.++++....
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886554
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1e-35 Score=232.57 Aligned_cols=107 Identities=41% Similarity=0.786 Sum_probs=102.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 047269 9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIA 88 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia 88 (217)
||+||+|||++|+++|..||.++|..||..|| +|++.||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhHHhcCccc
Q 047269 89 GRVPGRTDNQVKNHWNTHLCKKLGINKK 116 (217)
Q Consensus 89 ~~lpgRT~~q~k~Rw~~~l~k~~~~~~~ 116 (217)
++|||||+++|++||+.+|++.+.....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999998765443
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.2e-35 Score=231.13 Aligned_cols=106 Identities=48% Similarity=0.862 Sum_probs=102.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR 83 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~ 83 (217)
+|.+++|+||+|||++|+++|+.||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 5788999999999999999999999888999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 84 WSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 84 W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
|+.||+.|||||+++|++||+.+++++
T Consensus 101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 101 WAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999998775
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.9e-35 Score=228.59 Aligned_cols=104 Identities=38% Similarity=0.681 Sum_probs=100.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 047269 5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRW 84 (217)
Q Consensus 5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W 84 (217)
+..++|+||+|||++|+++|..||. +|..||+.|+ +|++.||++||.++|+|.+++|+||.|||++|+++|.+||++|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 4689999999999999999999998 9999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 85 SLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 85 ~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
+.||+.|||||+++|++||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988663
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=3.6e-33 Score=224.51 Aligned_cols=107 Identities=46% Similarity=0.843 Sum_probs=102.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR 83 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~ 83 (217)
+|.+++|+||+|||++|+++|..||.++|..||..|+ +|++.||+.||.++|+|.+++++||++||.+|++++.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 5778999999999999999999999878999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 84 WSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 84 W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
|+.||++|||||+++|++||+.++++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999987753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.3e-32 Score=219.73 Aligned_cols=104 Identities=33% Similarity=0.676 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 047269 6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGN-RW 84 (217)
Q Consensus 6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~-~W 84 (217)
.+++|+||+|||++|+++|++||.++|..||+.|| +|++.||++||.++|+|.+++++||+|||++|+.+|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999999 99999999999999999999999999999999999999995 79
Q ss_pred hhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 85 SLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 85 ~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
..||..|||||+.||++||.++|.+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 99999999999999999999988654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.2e-24 Score=148.33 Aligned_cols=67 Identities=30% Similarity=0.696 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHH
Q 047269 3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEE 70 (217)
Q Consensus 3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED 70 (217)
..+.+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 35679999999999999999999999779999999999 99999999999999999999999999987
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=1.2e-22 Score=157.61 Aligned_cols=75 Identities=32% Similarity=0.665 Sum_probs=51.3
Q ss_pred hhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 35 IHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 35 Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|||||+.||++||.++|.+.
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 789998 99999999999999999999999999999999999999995 7999999999999999999999988653
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.82 E-value=1.3e-20 Score=158.62 Aligned_cols=106 Identities=20% Similarity=0.319 Sum_probs=92.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----cchhhccccccccccccchhhhhccCCCCC-----------------
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQ-----WNRIHKVTGLKRCGKSCRLRWLNYLSPNVK----------------- 61 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~----------------- 61 (217)
.+.+++++||+|||+.|+++|+++|..+ |..||+.|+ |||+.||+.||..+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3568899999999999999999998742 999999999 99999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 047269 62 ------------HGEFTEEEENLIIRLHNL-L--------------------------------GN-------------- 82 (217)
Q Consensus 62 ------------~~~WT~eED~~L~~lv~~-~--------------------------------G~-------------- 82 (217)
+..||.+||..|...+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999987 2 11
Q ss_pred -----------chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 83 -----------RWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 83 -----------~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.|..||+.+|+||.+++|+||+..|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999775
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=126.30 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=47.3
Q ss_pred cchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269 48 CRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107 (217)
Q Consensus 48 cr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l 107 (217)
.--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999 999999999998653
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.4e-19 Score=121.51 Aligned_cols=58 Identities=29% Similarity=0.540 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCC
Q 047269 3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVK 61 (217)
Q Consensus 3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~ 61 (217)
.+|.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 46789999999999999999999999779999999999 99999999999999999875
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.76 E-value=1.9e-19 Score=138.00 Aligned_cols=82 Identities=13% Similarity=0.300 Sum_probs=76.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccc----cccccccccchhhhhccC-----CCCCCC-CCCHHHHHHH
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVT----GLKRCGKSCRLRWLNYLS-----PNVKHG-EFTEEEENLI 73 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l~-----p~~~~~-~WT~eED~~L 73 (217)
.+..++++||+|||+.|+++|++||.|+|..|++.+ + +||..+|++||++++. |.+++| +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456889999999999999999999999999999875 6 8999999999999997 999999 9999999999
Q ss_pred HHHHHHhCCchhh
Q 047269 74 IRLHNLLGNRWSL 86 (217)
Q Consensus 74 ~~lv~~~G~~W~~ 86 (217)
+.++..+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999977
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.75 E-value=3.9e-19 Score=117.14 Aligned_cols=52 Identities=42% Similarity=0.785 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN 59 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~ 59 (217)
+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999999 999999999999999984
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.74 E-value=5.1e-19 Score=116.51 Aligned_cols=52 Identities=31% Similarity=0.635 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCC
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPN 59 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~ 59 (217)
+++|+||+|||++|+++|..||.++|..||+.|+ +|++.||+.||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999989999999999 999999999999999984
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.74 E-value=3.4e-18 Score=120.06 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=55.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhcC
Q 047269 56 LSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGI 113 (217)
Q Consensus 56 l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~ 113 (217)
.+|.+++++||+|||++|+++|.+||.+|..||.+|||||++|||+||+.++++....
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987665
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=119.03 Aligned_cols=60 Identities=28% Similarity=0.413 Sum_probs=56.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhcCcc
Q 047269 55 YLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGINK 115 (217)
Q Consensus 55 ~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~~~~ 115 (217)
+|+|.+++++||.|||++|+++|..||.+|..||+ ++|||+.|||+||+.+|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999876543
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.74 E-value=1.9e-18 Score=132.61 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=72.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccc----cccccccccchhhhhcc-----CCCCCCCCCCHHH-HHHHH
Q 047269 5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVT----GLKRCGKSCRLRWLNYL-----SPNVKHGEFTEEE-ENLII 74 (217)
Q Consensus 5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~p~~~~~~WT~eE-D~~L~ 74 (217)
...++++||+|||+.|+++|++||.|+|..|++.. + +||..+|++||++++ +|.+++|.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 35789999999999999999999999999999864 5 899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCc
Q 047269 75 RLHNLLGNR 83 (217)
Q Consensus 75 ~lv~~~G~~ 83 (217)
.++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.72 E-value=2e-18 Score=120.19 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccc-cccccccchhhhhccCCCCCCCCCC
Q 047269 3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGL-KRCGKSCRLRWLNYLSPNVKHGEFT 66 (217)
Q Consensus 3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT 66 (217)
..+..++++||+|||++|+++|++||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456789999999999999999999998899999999976 8999999999999999999987653
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=8.6e-18 Score=113.81 Aligned_cols=55 Identities=27% Similarity=0.480 Sum_probs=51.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
+|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999987654
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=6.4e-18 Score=114.61 Aligned_cols=56 Identities=21% Similarity=0.458 Sum_probs=52.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCC
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV 60 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~ 60 (217)
.+.+++++||+|||++|+++|++||.++|..||+.|+ +||+.||+.||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 5679999999999999999999999779999999999 9999999999999998653
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=2.6e-17 Score=108.30 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 60 VKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 60 ~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999999864
No 23
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.68 E-value=8e-18 Score=115.67 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc-ccccccccchhhhhccCCCCC
Q 047269 6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG-LKRCGKSCRLRWLNYLSPNVK 61 (217)
Q Consensus 6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l~p~~~ 61 (217)
..+|++||+|||++|+++|++||.++|..||+.++ .+||+.||++||.+++.|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 36899999999999999999999889999998754 289999999999999988764
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.68 E-value=5e-17 Score=106.97 Aligned_cols=50 Identities=36% Similarity=0.733 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 60 VKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 60 ~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
+++++||+|||++|+++|.+||. +|..||..|||||+.||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 699999999999999999999998864
No 25
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-17 Score=112.57 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG 112 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~ 112 (217)
.|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||+++|++.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 4678999999999999999999999 7999999999999999999999999987654
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.66 E-value=9.7e-17 Score=106.06 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhhH
Q 047269 61 KHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 61 ~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~k~Rw~~~l~k 109 (217)
++++||+|||++|+++|.+|| ++|..||..|| |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999864
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=1.5e-16 Score=110.68 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=53.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhhHHhcC
Q 047269 55 YLSPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCKKLGI 113 (217)
Q Consensus 55 ~l~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~k~Rw~~~l~k~~~~ 113 (217)
...+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 346678899999999999999999999 79999999999 999999999999999887543
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.2e-16 Score=108.25 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=49.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
++.+.+++||+|||++|+++|.+|| ++|..||++||+||+.||++||.++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 8999999999999999999999998753
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-17 Score=114.57 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=52.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCC
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG 63 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~ 63 (217)
+|.+++++||+|||++|+++|+.||. +|..||+ ++ |||+.||+.||.++|+|.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 68899999999999999999999998 9999999 76 7999999999999998876654
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.64 E-value=8.6e-17 Score=108.35 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269 5 NEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 5 ~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
..+.+++||+|||++|+++|++||.++|..||+.||.+||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3577899999999999999999998899999999986899999999999875
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=6.3e-17 Score=106.94 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccc-cccccccchhhhhccC
Q 047269 8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGL-KRCGKSCRLRWLNYLS 57 (217)
Q Consensus 8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~ 57 (217)
++|+||+|||++|+++|++||.++|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999998899999999975 6999999999999874
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-17 Score=114.83 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcchhhccccccccccccchhhhhccCCCCCCCC
Q 047269 3 AENEYKKGLWTQEEDRILLEYIRVHGR-----GQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGE 64 (217)
Q Consensus 3 ~~~~~kkg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~ 64 (217)
.+|.+++++||+|||++|+++|..||. ++|..||+.|+ +||..||+.||.++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999995 68999999999 99999999999999988776654
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=3.4e-16 Score=107.45 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhhHHh
Q 047269 60 VKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP--GRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 60 ~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRT~~q~k~Rw~~~l~k~~ 111 (217)
.++++||+|||++|+++|.+|| ++|..||+.+| |||+.||++||+++++..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4689999999999999999999 69999999865 9999999999999987654
No 34
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.61 E-value=1.2e-16 Score=112.01 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCC
Q 047269 3 AENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKH 62 (217)
Q Consensus 3 ~~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~ 62 (217)
.+|.+++++||+|||++|+++|+.||. +|..||+.|+ +||..||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999 9999999999 999999999999998765554
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=109.43 Aligned_cols=56 Identities=25% Similarity=0.250 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLG------NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG 112 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G------~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~ 112 (217)
+|.+.+++||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+.+|.+...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7899999999999999999999999977553
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.60 E-value=1.1e-15 Score=102.96 Aligned_cols=50 Identities=26% Similarity=0.427 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHh
Q 047269 58 PNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAGRVP-GRTDNQVKNHWNTHL 107 (217)
Q Consensus 58 p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRT~~q~k~Rw~~~l 107 (217)
..+.+++||++||.+|+++|.+|| ++|..||++|| +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456688999999999999999999 89999999999 999999999998764
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-16 Score=116.20 Aligned_cols=56 Identities=27% Similarity=0.205 Sum_probs=52.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 55 YLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 55 ~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.++|.+++|+||.|||++|+++|.+||.+|..||.+|||||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999998764
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-15 Score=105.02 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=48.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCC
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKH 62 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~ 62 (217)
+|.+++|+||+|||++|+++|++||. +|..||+.| |||+.||+.||.. |....+.
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 57899999999999999999999998 799999999 6999999999975 5544443
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.52 E-value=7.9e-15 Score=109.84 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=65.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccc----cccccccccchhhhhcc-----CCCCCCCCCCHHHHHH-H
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVT----GLKRCGKSCRLRWLNYL-----SPNVKHGEFTEEEENL-I 73 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~p~~~~~~WT~eED~~-L 73 (217)
....++++||+|||+.|+++|++||.|+|..|++.+ + +||..+|++||++++ +|.+++|.-++.|--. +
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 356889999999999999999999999999999865 5 899999999999998 7899998877776554 7
Q ss_pred HHHHHHhC
Q 047269 74 IRLHNLLG 81 (217)
Q Consensus 74 ~~lv~~~G 81 (217)
++|...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.51 E-value=1.2e-14 Score=104.52 Aligned_cols=69 Identities=16% Similarity=0.374 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhcc----ccccccccccchhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 047269 10 GLWTQEEDRILLEYIRVHGRGQWNRIHKV----TGLKRCGKSCRLRWLNYL-----SPNVKHG-EFTEEEENLIIRLHNL 79 (217)
Q Consensus 10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~l-----~p~~~~~-~WT~eED~~L~~lv~~ 79 (217)
++||+|||+.|+++|++||.|+|..|++. ++ +||..+|++||++++ +|.+++| +...+...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 77 999999999999987 6766655 6777777888887653
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=1.9e-14 Score=101.12 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 58 PNVKHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 58 p~~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
+...+++||.+||.+|+.++..|| .+|..||++|||||+.||++||..++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999988753
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.50 E-value=5.3e-15 Score=114.91 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=60.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNR 83 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~ 83 (217)
+|.+++|+||+|||++|+++|..||. +|..||+.|+ |||..||+.||.++|.+.+..++|+.+-- ......+.+
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~ 122 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRK 122 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC----
T ss_pred CccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhh
Confidence 57889999999999999999999997 8999999999 99999999999999999999988875521 001112345
Q ss_pred hhhhhccC
Q 047269 84 WSLIAGRV 91 (217)
Q Consensus 84 W~~Ia~~l 91 (217)
|..|++.|
T Consensus 123 ~~~i~k~~ 130 (131)
T 3zqc_A 123 AADVPKKL 130 (131)
T ss_dssp --------
T ss_pred hhhcchhc
Confidence 77776655
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=103.71 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc
Q 047269 6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY 55 (217)
Q Consensus 6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 55 (217)
...+++||+|||++|+++|++|| ++|..||++|| +||+.||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 45689999999999999999999 69999999999 99999999999997
No 44
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.47 E-value=5.8e-14 Score=108.37 Aligned_cols=56 Identities=27% Similarity=0.567 Sum_probs=51.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG 112 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~ 112 (217)
.+..++|+||+|||++|+++|.+||.+|..||..|||||+.||+.||.++|.+.+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~ 61 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSIS 61 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccc
Confidence 45678999999999999999999999999999999999999999999999865543
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.46 E-value=6.9e-14 Score=104.39 Aligned_cols=51 Identities=35% Similarity=0.728 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 60 VKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 60 ~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
+++|+||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence 67899999999999999999996 7999999999999999999999988543
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=101.11 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 047269 59 NVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH 106 (217)
Q Consensus 59 ~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~ 106 (217)
...+++||++||.+|+++|.+||++|..||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999865
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=7.7e-15 Score=107.00 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCC
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p 58 (217)
++.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 56789999999999999999999998 8999999999 99999999999998763
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=3e-14 Score=100.16 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhccC
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYLS 57 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 57 (217)
.+...+++||+|||++|+.+|+.||. .+|..||++|| |||..||+.||..++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34578899999999999999999993 48999999999 9999999999998664
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=3e-13 Score=91.44 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHHhhH
Q 047269 60 VKHGEFTEEEENLIIRLHNLLGNRWSLIA---GRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 60 ~~~~~WT~eED~~L~~lv~~~G~~W~~Ia---~~lpgRT~~q~k~Rw~~~l~k 109 (217)
.++.+||+||++.|+++|++||.+|+.|+ .++++||..++++||++++++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46789999999999999999999999999 678999999999999998865
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.41 E-value=5e-13 Score=96.09 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhHHh
Q 047269 63 GEFTEEEENLIIRLHNLLGN-RWSLIAGR----VPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 63 ~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
.+||.|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999995 899999999999999997654
No 51
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.40 E-value=2.2e-13 Score=102.23 Aligned_cols=49 Identities=27% Similarity=0.412 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 62 HGEFTEEEENLIIRLHNLLGN-RWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
+|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence 589999999999999999995 8999999999999999999999988654
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.37 E-value=1.4e-12 Score=97.60 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=48.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHHhhHHh
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGRV----PGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~l----pgRT~~q~k~Rw~~~l~k~~ 111 (217)
.+..++++||.|||+.|+.+|.+||. +|+.|++.+ ++||+.+||+||+++++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34567899999999999999999996 999999965 89999999999999997643
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.36 E-value=3.7e-13 Score=113.36 Aligned_cols=55 Identities=27% Similarity=0.507 Sum_probs=48.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269 58 PNVKHGEFTEEEENLIIRLHNLLGNR------WSLIAGRVPGRTDNQVKNHWNTHLCKKLG 112 (217)
Q Consensus 58 p~~~~~~WT~eED~~L~~lv~~~G~~------W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~ 112 (217)
+.+++++||+|||++|+++|++||++ |..||++|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45778999999999999999999875 99999999999999999999999998765
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.36 E-value=7e-13 Score=101.52 Aligned_cols=55 Identities=25% Similarity=0.400 Sum_probs=50.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhHH
Q 047269 56 LSPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGR----VPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 56 l~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~ 110 (217)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 566788999999999999999999996 99999997 49999999999999999753
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.32 E-value=1.9e-12 Score=94.97 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 61 KHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 61 ~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
.+++||.|||.+|++++..|| ++|..||+.|||||+.+|++||..++....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999996 689999999999999999999999886643
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.29 E-value=3.8e-12 Score=97.56 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=48.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhHH
Q 047269 57 SPNVKHGEFTEEEENLIIRLHNLLGN-RWSLIAGR----VPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 57 ~p~~~~~~WT~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRT~~q~k~Rw~~~l~k~ 110 (217)
....++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999995 99999986 48999999999999999764
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.19 E-value=4.1e-12 Score=93.14 Aligned_cols=49 Identities=10% Similarity=0.278 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CCCcchhhccccccccccccchhhhhcc
Q 047269 7 YKKGLWTQEEDRILLEYIRVHG---RGQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
-.+++||+|||++|.+++.+|| ..+|..||+.|| |||..||+.||..++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3478999999999999999997 347999999999 999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6.3e-11 Score=80.23 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269 61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107 (217)
Q Consensus 61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l 107 (217)
..++||++|+.++++++..||.+|..||..||+||..+|..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999998654
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=84.66 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=59.0
Q ss_pred cccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHHhhHHhcC
Q 047269 44 CGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRV-----PGRTDNQVKNHWNTHLCKKLGI 113 (217)
Q Consensus 44 t~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~l-----pgRT~~q~k~Rw~~~l~k~~~~ 113 (217)
.+.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+.++ ++||..++|+||..+.++.+..
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345678999999976 89999999999999999999999999999 5899999999999998876543
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=1.5e-10 Score=78.18 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcchhh---ccccccccccccchhhhhccC
Q 047269 6 EYKKGLWTQEEDRILLEYIRVHGRGQWNRIH---KVTGLKRCGKSCRLRWLNYLS 57 (217)
Q Consensus 6 ~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia---~~~~~~Rt~~qcr~Rw~~~l~ 57 (217)
...+++||+|||+.|+++|++||. +|..|+ ..++ +||...+++||++...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 457899999999999999999998 999999 5666 9999999999998654
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=77.29 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
...++||+||++++.+++..||. +|..||..|| +|+..||..+|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 45689999999999999999997 9999999999 999999999997643
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.98 E-value=6.1e-10 Score=77.85 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 59 NVKHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 59 ~~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
....+.||.||+++|.+++..|+ .+|..||.+| |||..+|++||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45578999999999999999997 6799999998 99999999999988655
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=1.9e-09 Score=75.35 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhhHHhc
Q 047269 61 KHGEFTEEEENLIIRLHNLLG----NRWSLIAGRVPGRTDNQVKNHWNTHLCKKLG 112 (217)
Q Consensus 61 ~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~~ 112 (217)
....||.+|+.+|.+++..|+ .+|..||..|||||..+|+.||..+++..-+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS 62 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Confidence 346899999999999999998 4799999999999999999999988654433
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.87 E-value=2.2e-09 Score=89.69 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 61 KHGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 61 ~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
..++||++|+.++++++.+||++|..||+.|++||..||+++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999977654
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=8.3e-10 Score=77.15 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhcc
Q 047269 5 NEYKKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 5 ~~~kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
...+.+.||.|||++|.+++.+|+. +.|..||+.+| ||..+|+.||..+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 4567889999999999999999984 47999999975 99999999998754
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.78 E-value=3.6e-09 Score=97.50 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 047269 63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHL 107 (217)
Q Consensus 63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l 107 (217)
..||.+|-.++++++.+||.+|..||..+++||..|||++|....
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999997543
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=3.6e-09 Score=73.97 Aligned_cols=50 Identities=16% Similarity=0.376 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCcchhhccccccccccccchhhhhccCC
Q 047269 8 KKGLWTQEEDRILLEYIRVHGR---GQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58 (217)
Q Consensus 8 kkg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p 58 (217)
....||.+|+++|..++..|+. ++|..||..|| +||..+|+.||...+..
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 3468999999999999999986 47999999999 99999999999887543
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.67 E-value=7.7e-09 Score=69.49 Aligned_cols=48 Identities=23% Similarity=0.455 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcchhhc-cccccccccccchhhhhccC
Q 047269 9 KGLWTQEEDRILLEYIRVH--------GRGQWNRIHK-VTGLKRCGKSCRLRWLNYLS 57 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~ 57 (217)
+.+||+|||+.|+++|..| |..-|+.+|+ .++ ++|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4446999999 788 9999999999999875
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.62 E-value=1.3e-08 Score=84.99 Aligned_cols=49 Identities=27% Similarity=0.436 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccC
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLS 57 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 57 (217)
...++||+||++++++++.+||. +|..||+.|| +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34679999999999999999998 9999999999 9999999999988764
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.51 E-value=1.2e-07 Score=63.53 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-chhhhhc-cCCCCCHHHHHHHHHHHhh
Q 047269 62 HGEFTEEEENLIIRLHNLL--------GN-RWSLIAG-RVPGRTDNQVKNHWNTHLC 108 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~--------G~-~W~~Ia~-~lpgRT~~q~k~Rw~~~l~ 108 (217)
+.+||.|||..|++.|.+| |+ -|..+|+ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 43 3999999 8999999999999988764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.45 E-value=4.8e-07 Score=79.10 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccch-------hhhh----------------------------
Q 047269 10 GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRL-------RWLN---------------------------- 54 (217)
Q Consensus 10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~-------Rw~~---------------------------- 54 (217)
+.||..+...++.++.+||..+|..||..|+ ++|...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 888877652 2210
Q ss_pred ---------------ccCCCCCCCCCCHHHHHHHHHHHHHhC----Cchhhhhc------------cCCCCCHHHHHHHH
Q 047269 55 ---------------YLSPNVKHGEFTEEEENLIIRLHNLLG----NRWSLIAG------------RVPGRTDNQVKNHW 103 (217)
Q Consensus 55 ---------------~l~p~~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~------------~lpgRT~~q~k~Rw 103 (217)
+..+..+...||++||..|+-++.+|| +.|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 001222446899999999999999999 57999962 44679999999999
Q ss_pred HHHhhH
Q 047269 104 NTHLCK 109 (217)
Q Consensus 104 ~~~l~k 109 (217)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.39 E-value=4.8e-08 Score=67.87 Aligned_cols=45 Identities=9% Similarity=0.271 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---Ccchhhccccccccccccchhhh
Q 047269 8 KKGLWTQEEDRILLEYIRVHGRG---QWNRIHKVTGLKRCGKSCRLRWL 53 (217)
Q Consensus 8 kkg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~ 53 (217)
..+.||.+|+++|..++..|+.+ .|.+||..|| |||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 35689999999999999999864 7999999999 999999999985
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.2e-06 Score=59.41 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHHH
Q 047269 58 PNVKHGEFTEEEENLIIRLHNLLGNRWSLIAG-RVPGRTDNQVKNHWNTH 106 (217)
Q Consensus 58 p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~-~lpgRT~~q~k~Rw~~~ 106 (217)
|.+...+||++|-.+..+++.+||.+|..|++ .||+||..+|...|+..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 56777899999999999999999999999999 58999999999988743
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.31 E-value=1.1e-07 Score=66.16 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 047269 62 HGEFTEEEENLIIRLHNLLGN----RWSLIAGRVPGRTDNQVKNHWN 104 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G~----~W~~Ia~~lpgRT~~q~k~Rw~ 104 (217)
.++||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999885
No 75
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.28 E-value=9e-07 Score=63.70 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 64 EFTEEEENLIIRLHNLLGN---RWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 64 ~WT~eED~~L~~lv~~~G~---~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
-||.|||..|+...++-|. .|..||+.|.+|+++||++||+.+++-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5999999999999999986 8999999999999999999999998654
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.16 E-value=4.4e-06 Score=60.67 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=50.9
Q ss_pred hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCC-----CCCHHHHHHHHHHHhhHHhc
Q 047269 50 LRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGNRWSLIAGRVP-----GRTDNQVKNHWNTHLCKKLG 112 (217)
Q Consensus 50 ~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lp-----gRT~~q~k~Rw~~~l~k~~~ 112 (217)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||..++|.||+.+.++.+.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666665 3689999999999999999999999998873 79999999999999887654
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.45 E-value=2.6e-07 Score=63.09 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 64 EFTEEEENLIIRLHNLLGN---RWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 64 ~WT~eED~~L~~lv~~~G~---~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
-||.|||..|+..+++-|. .|..||..| +||++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 899999999 99999999999988753
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.5e-06 Score=58.87 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=44.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcchhhc-cccccccccccchhhhhc
Q 047269 4 ENEYKKGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLNY 55 (217)
Q Consensus 4 ~~~~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~ 55 (217)
.|......||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 46677889999999999999999999 9999998 688 99999999877543
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.95 E-value=1.3e-05 Score=58.57 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 047269 62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTH 106 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~ 106 (217)
...||++|..+..+++..||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999998743
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.93 E-value=1.9e-05 Score=54.46 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 047269 62 HGEFTEEEENLIIRLHNLLGNRWSLIAG-RVPGRTDNQVKNHWNT 105 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~-~lpgRT~~q~k~Rw~~ 105 (217)
..+||++|-.+..+++.+||.+|..|++ .||+||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999983
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.91 E-value=4.2e-06 Score=77.15 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269 8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
...+||.||-+++++++.+||. +|..||++|| +|+..||+.+|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4679999999999999999998 9999999999 999999999987653
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.82 E-value=8.3e-06 Score=59.37 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc----ccccccccchhhhhcc
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG----LKRCGKSCRLRWLNYL 56 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l 56 (217)
++.++||.||+..|++++++|+. .|..|+.... .+||..+++.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 9999999882 2799999999997643
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.76 E-value=1.3e-05 Score=55.33 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcchhhc-cccccccccccchhhhh
Q 047269 8 KKGLWTQEEDRILLEYIRVHGRGQWNRIHK-VTGLKRCGKSCRLRWLN 54 (217)
Q Consensus 8 kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~ 54 (217)
....||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4568999999999999999999 9999999 699 9999999987764
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.75 E-value=1.2e-05 Score=58.68 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhh
Q 047269 9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLN 54 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~ 54 (217)
...||+||.++..+++..||. +|..||..++ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 457999999999999999998 9999999999 9999999988754
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.50 E-value=7.5e-05 Score=53.16 Aligned_cols=52 Identities=13% Similarity=0.342 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHHhhHHhcC
Q 047269 62 HGEFTEEEENLIIRLHNLLG----------NRWSLIAGRVP----GRTDNQVKNHWNTHLCKKLGI 113 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G----------~~W~~Ia~~lp----gRT~~q~k~Rw~~~l~k~~~~ 113 (217)
...||.+|-..||.++..+. ..|..||..|. .||+.||+.+|.++.+.....
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999997632 25999999873 799999999999988765443
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.48 E-value=7.9e-05 Score=53.60 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcchhhccccccccccccchhhhh
Q 047269 10 GLWTQEEDRILLEYIRVHGR--GQWNRIHKVTGLKRCGKSCRLRWLN 54 (217)
Q Consensus 10 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~ 54 (217)
-.||.|||..|+...++.|. ..|..||+.++ +|++.|+.+|++.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 36999999999999999975 36999999998 9999999999986
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.45 E-value=0.00021 Score=63.87 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc----------------------------------
Q 047269 10 GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY---------------------------------- 55 (217)
Q Consensus 10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~---------------------------------- 55 (217)
+.||.-+=..++.++.+||..+-..||..|+.+++...++ +|..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999985457765554 11110
Q ss_pred --------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhhcc------------CCCCCHHHHH
Q 047269 56 --------------L----SPN-VKHGEFTEEEENLIIRLHNLLG----NRWSLIAGR------------VPGRTDNQVK 100 (217)
Q Consensus 56 --------------l----~p~-~~~~~WT~eED~~L~~lv~~~G----~~W~~Ia~~------------lpgRT~~q~k 100 (217)
| .++ .+...||.+||..|+-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 011 1345799999999999999999 579999332 3579999999
Q ss_pred HHHHHHhhHHhc
Q 047269 101 NHWNTHLCKKLG 112 (217)
Q Consensus 101 ~Rw~~~l~k~~~ 112 (217)
.|...|++-...
T Consensus 283 rRc~tLi~~IeK 294 (374)
T 2y9y_A 283 RRGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999865443
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.39 E-value=0.00051 Score=56.36 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=68.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCCcchhhcc--ccccccccccch-------hhhhcc--------------------
Q 047269 8 KKGLWTQEEDRILLEYIRVHG--RGQWNRIHKV--TGLKRCGKSCRL-------RWLNYL-------------------- 56 (217)
Q Consensus 8 kkg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qcr~-------Rw~~~l-------------------- 56 (217)
....||..|-..|++++.+|| .+.|..|+.. +. +++...+.. ++...+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 456899999999999999999 5689999853 43 455433321 000000
Q ss_pred ---------------------------------------C-----CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhc--
Q 047269 57 ---------------------------------------S-----PNVKHGEFTEEEENLIIRLHNLLG-NRWSLIAG-- 89 (217)
Q Consensus 57 ---------------------------------------~-----p~~~~~~WT~eED~~L~~lv~~~G-~~W~~Ia~-- 89 (217)
- +..-...||.+||..|+..+.+|| ++|..|..
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 0 001123599999999999999999 99999954
Q ss_pred cC------------CCCCHHHHHHHHHHHhh
Q 047269 90 RV------------PGRTDNQVKNHWNTHLC 108 (217)
Q Consensus 90 ~l------------pgRT~~q~k~Rw~~~l~ 108 (217)
.+ ..+++..+..|...+|+
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHH
Confidence 21 12456789999877765
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.14 E-value=7.9e-05 Score=53.05 Aligned_cols=50 Identities=26% Similarity=0.532 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---------CCcchhhcccc---ccccccccchhhhhcc
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGR---------GQWNRIHKVTG---LKRCGKSCRLRWLNYL 56 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~l 56 (217)
-+...||.+|-..|+.+...... .-|..||..|. ..|++.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35688999999999999865321 15999998654 4699999999998753
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.21 E-value=6.6e-05 Score=51.17 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCcchhhccccccccccccchhhhhcc
Q 047269 11 LWTQEEDRILLEYIRVHGR--GQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 11 ~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
.||.|||..|+...++-|. .-|..||+.++ |++.|+..||+..+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM 61 (70)
Confidence 6999999999999999886 36999999985 99999999998754
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.91 E-value=0.0044 Score=44.84 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcchhhcccc----ccccccccchhhhhcc
Q 047269 7 YKKGLWTQEEDRILLEYIRVHGRGQWNRIHKVTG----LKRCGKSCRLRWLNYL 56 (217)
Q Consensus 7 ~kkg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l 56 (217)
++...||.||...|.+++++|+- .|--|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998 9999997653 2689999999997653
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.31 E-value=0.049 Score=36.64 Aligned_cols=47 Identities=19% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHHh
Q 047269 61 KHGEFTEEEENLIIRLHNLLGNR---WSLIAGRV--PGRTDNQVKNHWNTHL 107 (217)
Q Consensus 61 ~~~~WT~eED~~L~~lv~~~G~~---W~~Ia~~l--pgRT~~q~k~Rw~~~l 107 (217)
.+-.||+|..+..+++|.++|.. +..|.+.| +|.|..+|+.|.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999954 78898876 7999999999877653
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.96 E-value=0.05 Score=47.35 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 62 HGEFTEEEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
-+.||..+...++.++.+|| .+|..||..|+|+|...|+.++.....+-
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 35799999999999999999 58999999999999999988777666543
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.78 E-value=0.027 Score=45.85 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhhc
Q 047269 9 KGLWTQEEDRILLEYIRVHGRGQWNRIHK 37 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~ 37 (217)
...||++||..|+..|.+||.|+|..|-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44699999999999999999999999975
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.17 E-value=0.027 Score=48.25 Aligned_cols=28 Identities=39% Similarity=0.667 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhc
Q 047269 10 GLWTQEEDRILLEYIRVHGRGQWNRIHK 37 (217)
Q Consensus 10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~ 37 (217)
..|+.+||..|+..|-+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999974
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.92 E-value=0.051 Score=36.54 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=38.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--Ccchhhccccc-cccccccchhhhhc
Q 047269 5 NEYKKGLWTQEEDRILLEYIRVHGRG--QWNRIHKVTGL-KRCGKSCRLRWLNY 55 (217)
Q Consensus 5 ~~~kkg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rt~~qcr~Rw~~~ 55 (217)
+...+-.||+|.-++.+.+|+..|.. -++.|.+.|+. +.|..+++-|.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44567899999999999999999942 26788887763 56777777665443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.67 E-value=2.5 Score=36.02 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC---Cchhhhhc--cCCCCCHHHHHHHHHHHhh
Q 047269 62 HGEFTEEEENLIIRLHNLLG---NRWSLIAG--RVPGRTDNQVKNHWNTHLC 108 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G---~~W~~Ia~--~lpgRT~~q~k~Rw~~~l~ 108 (217)
+++||..|-..|+.++.+|| .+|..|+. .|+.++...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 58999965 5789999999998887764
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=70.43 E-value=1.6 Score=32.67 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCcchhhccccccccc----cccchhhhhccCCCCCCCCCCHHHHHHHHHHHH
Q 047269 30 GQWNRIHKVTGLKRCG----KSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHN 78 (217)
Q Consensus 30 ~~W~~Ia~~~~~~Rt~----~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~ 78 (217)
..|..||..|+...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 3699999999854432 356788888886532 377788888877664
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=69.48 E-value=9.8 Score=33.79 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHh
Q 047269 63 GEFTEEEENLIIRLHNLLG-NRWSLIAGRVP-GRTDNQVKNHWNTHL 107 (217)
Q Consensus 63 ~~WT~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRT~~q~k~Rw~~~l 107 (217)
+.||.-+=..++.+..+|| .+-..||..|. |+|...|+.......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4799999999999999999 56999999997 999999995444443
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.39 E-value=1.6 Score=32.20 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCcchhhccccccccccccchhhhhccCC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRCGKSCRLRWLNYLSP 58 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p 58 (217)
+|..+|.+.|. ..|..||..++.. .+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~-~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQIS-DYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSC-CTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 46677777763 3799999999843 377888888887753
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=66.08 E-value=4.3 Score=29.80 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 72 LIIRLHNLLGN--------RWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 72 ~L~~lv~~~G~--------~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
.|..+|...|+ .|..||..|.--.+..++..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37788888874 699999988433478999999988744
No 102
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=64.61 E-value=2.7 Score=30.35 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc----ccccchhhhhccCC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC----GKSCRLRWLNYLSP 58 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~p 58 (217)
+|..+|.+.|. ..|..||..|+...+ +.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777662 379999999884332 35677888888765
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=61.94 E-value=11 Score=26.89 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHHhhH
Q 047269 72 LIIRLHNLLGN--------RWSLIAGRVPGRT----DNQVKNHWNTHLCK 109 (217)
Q Consensus 72 ~L~~lv~~~G~--------~W~~Ia~~lpgRT----~~q~k~Rw~~~l~k 109 (217)
.|..+|.+.|+ .|..||..|.--. ..++|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777888873 6999999983222 46889999888754
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=61.36 E-value=9.7 Score=27.92 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHHhhH
Q 047269 72 LIIRLHNLLGN--------RWSLIAGRVPGRT----DNQVKNHWNTHLCK 109 (217)
Q Consensus 72 ~L~~lv~~~G~--------~W~~Ia~~lpgRT----~~q~k~Rw~~~l~k 109 (217)
+|..+|...|+ .|..||..|.--. ..++|..|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888883 6999999982221 56789999988754
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=59.07 E-value=4.2 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc---ccccchhhhhccC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC---GKSCRLRWLNYLS 57 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~ 57 (217)
+|..+|.+.|. ..|..||..|+...+ +.+.+..|.++|.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57778877763 379999999984332 3456677777664
No 106
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.13 E-value=13 Score=23.44 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 65 FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 65 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.++ .+..++.++-..|-.+..||..+ |-+...|+.+....+++-
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 443 44445555556788999999999 889999999887766543
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.37 E-value=13 Score=27.44 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCC--C--HHHHHHHHHHHhhHH
Q 047269 72 LIIRLHNLLGN--------RWSLIAGRVPGR--T--DNQVKNHWNTHLCKK 110 (217)
Q Consensus 72 ~L~~lv~~~G~--------~W~~Ia~~lpgR--T--~~q~k~Rw~~~l~k~ 110 (217)
+|..+|.+.|+ .|..||..|.-- + ...+|..|..+|-..
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47778888874 699999988221 2 368899999888653
No 108
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=56.64 E-value=14 Score=27.40 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHHhhHH
Q 047269 72 LIIRLHNLLGN--------RWSLIAGRVPGRT----DNQVKNHWNTHLCKK 110 (217)
Q Consensus 72 ~L~~lv~~~G~--------~W~~Ia~~lpgRT----~~q~k~Rw~~~l~k~ 110 (217)
+|..+|...|+ .|..||..|.--+ ..++|..|..+|-..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37777888773 6999999882222 468899999888653
No 109
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=56.42 E-value=4.6 Score=30.15 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc----ccccchhhhhccCC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC----GKSCRLRWLNYLSP 58 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~p 58 (217)
+|..+|.+.|. ..|..||..|+...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777763 379999999884432 24567777777654
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=55.23 E-value=6.8 Score=29.18 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 73 IIRLHNLLGN--------RWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 73 L~~lv~~~G~--------~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
|..+|.+.|+ .|..||..|.--.+..+|..|..+|-..
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 6677777763 5999999883333899999999988653
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=54.02 E-value=17 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 65 FTEEEENLIIRLHNL----LGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 65 WT~eED~~L~~lv~~----~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.++.|- .++.+.-- .|-.+.+||..+ |-|...|+.+....+++-
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344444 44444433 467899999999 899999999888776554
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=52.83 E-value=5.6 Score=29.57 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc---ccccchhhhhccC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC---GKSCRLRWLNYLS 57 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~ 57 (217)
+|..+|.+.|. ..|..||..++...+ +.+++..|.++|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 46677777763 379999999984432 2455667776663
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=51.92 E-value=5.8 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=25.1
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc---ccccchhhhhccC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC---GKSCRLRWLNYLS 57 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~ 57 (217)
+|..+|.+.|. ..|.+||..++...+ +.+.+..|.++|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 46666666642 379999999884332 2356667777664
No 114
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=51.44 E-value=5 Score=30.70 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc----ccccchhhhhccCC
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC----GKSCRLRWLNYLSP 58 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~p 58 (217)
+|..+|.+.|. ..|..||..|+...+ +.+++..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46677777763 379999999884332 34567788888765
No 115
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=51.42 E-value=15 Score=27.26 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC--
Q 047269 7 YKKGLWTQEED--RILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRLHNLLGN-- 82 (217)
Q Consensus 7 ~kkg~WT~eED--~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~lv~~~G~-- 82 (217)
.=+.+|.+.+. +.|.+..+..|. ....|.. ++ ||... -.+|..+|.+.|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~lD-----------------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCELD-----------------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEECC-----------------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEecc-----------------------HHHHHHHHHHcCcHH
Confidence 34567988775 456666777776 4444442 23 33321 1237788888884
Q ss_pred ------chhhhhccC--CCC---CHHHHHHHHHHHhhHH
Q 047269 83 ------RWSLIAGRV--PGR---TDNQVKNHWNTHLCKK 110 (217)
Q Consensus 83 ------~W~~Ia~~l--pgR---T~~q~k~Rw~~~l~k~ 110 (217)
.|..||..| |.- ....+|..|..+|-..
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999988 322 2467899999888654
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=50.87 E-value=19 Score=26.65 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHHhhHH
Q 047269 71 NLIIRLHNLLGN--------RWSLIAGRV--PGR---TDNQVKNHWNTHLCKK 110 (217)
Q Consensus 71 ~~L~~lv~~~G~--------~W~~Ia~~l--pgR---T~~q~k~Rw~~~l~k~ 110 (217)
..|..+|...|+ .|..||..| |.. ....+|..|..+|-..
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 347788888884 699999988 322 2578999999888653
No 117
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.67 E-value=6.8 Score=29.04 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHHHHHhCC-------CCcchhhcccccccc---ccccchhhhhcc
Q 047269 19 ILLEYIRVHGR-------GQWNRIHKVTGLKRC---GKSCRLRWLNYL 56 (217)
Q Consensus 19 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l 56 (217)
+|..+|.+.|. ..|..||..|+...+ +.+.+..|.++|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 46777777763 379999999984332 134555666655
No 118
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=47.33 E-value=18 Score=23.06 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=25.6
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 80 LGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 80 ~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.|-.+.+||..+ |-|...|+.+....+++-
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 367899999999 999999999988777554
No 119
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=46.43 E-value=13 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=14.7
Q ss_pred CCCCCCCCCHHHHHHHH
Q 047269 5 NEYKKGLWTQEEDRILL 21 (217)
Q Consensus 5 ~~~kkg~WT~eED~~L~ 21 (217)
|.-..|.||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999997
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=46.39 E-value=23 Score=26.88 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHHhhH
Q 047269 72 LIIRLHNLLGN--------RWSLIAGRV--PGR---TDNQVKNHWNTHLCK 109 (217)
Q Consensus 72 ~L~~lv~~~G~--------~W~~Ia~~l--pgR---T~~q~k~Rw~~~l~k 109 (217)
.|..+|.+.|+ .|..||..| |.. ....+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 47778888874 699999988 322 256899999988855
No 121
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=45.88 E-value=7 Score=27.44 Aligned_cols=45 Identities=18% Similarity=0.478 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCC-------CCCCCCHHHHHHHH
Q 047269 17 DRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNV-------KHGEFTEEEENLII 74 (217)
Q Consensus 17 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~-------~~~~WT~eED~~L~ 74 (217)
+..|.++|+.|| |...+..+. ..|.. .+|++ ++.+|..+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 467899999998 999998776 33432 35554 36788887766654
No 122
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=42.69 E-value=94 Score=22.51 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccc---hhhhhc--cCCCCC----CCCCCHHHHHHHHHHHHH
Q 047269 9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCR---LRWLNY--LSPNVK----HGEFTEEEENLIIRLHNL 79 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr---~Rw~~~--l~p~~~----~~~WT~eED~~L~~lv~~ 79 (217)
....|.++-..++.++. .|. .-..||+.++ .+...++ .+|... +.+... ....+.+....|+.++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 34689999888888884 565 6789999988 4433333 233221 222221 234788888888888876
Q ss_pred hC
Q 047269 80 LG 81 (217)
Q Consensus 80 ~G 81 (217)
.+
T Consensus 106 ~~ 107 (149)
T 1k78_A 106 NP 107 (149)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 123
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.16 E-value=32 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 70 ENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 70 D~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
+..++.++-..|-.-..||..| |-+...|+.+....+++
T Consensus 42 ~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 42 HRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3445555555677899999999 89999999988776554
No 124
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.29 E-value=7.7 Score=29.60 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhccCCCCCCC-----------------------CCCHHHHH
Q 047269 15 EEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHG-----------------------EFTEEEEN 71 (217)
Q Consensus 15 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~-----------------------~WT~eED~ 71 (217)
+-|.+|+.+++..|.-.|.+||+.+| -+...|+.|..+.....+-++ +=..+.-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~ 80 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLK 80 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHH
Confidence 45788999999988889999999998 777788887766533322111 11223345
Q ss_pred HHHHHHHHhC---------CchhhhhccCCCCCHHHHHHHHHHHhh
Q 047269 72 LIIRLHNLLG---------NRWSLIAGRVPGRTDNQVKNHWNTHLC 108 (217)
Q Consensus 72 ~L~~lv~~~G---------~~W~~Ia~~lpgRT~~q~k~Rw~~~l~ 108 (217)
.+.+.+..+. +.|.-+...+ .|+...+..-...++.
T Consensus 81 ~~~~~l~~~peV~~~~~vtG~~D~~l~v~-~~d~~~l~~~l~~~l~ 125 (162)
T 3i4p_A 81 RFSEVVSEFPEVVEFYRMSGDVDYLLRVV-VPDIAAYDAFYKRMIA 125 (162)
T ss_dssp HHHHHHHHCTTEEEEEECCSSCSEEEEEE-ESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEeeecCCCCCEEEEEE-ECCHHHHHHHHHHHhh
Confidence 5666666654 4566666555 5777777665555443
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=39.92 E-value=1.1e+02 Score=22.57 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 047269 10 GLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNY------LSPNVK----HGEFTEEEENLIIRLHNL 79 (217)
Q Consensus 10 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~------l~p~~~----~~~WT~eED~~L~~lv~~ 79 (217)
...|.++-..++.++. .|. .-..||+.++ .+...++ ||.+. +.+... ....+.++.+.|+.++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688999888888884 565 7889999988 4443333 34332 222211 234777777888888766
Q ss_pred hC
Q 047269 80 LG 81 (217)
Q Consensus 80 ~G 81 (217)
.+
T Consensus 99 ~~ 100 (159)
T 2k27_A 99 NP 100 (159)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 126
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.16 E-value=50 Score=21.16 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 65 FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 65 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.|+.|-+.| .++ ..|-.-..||..+ |-+...|+.+....+++-
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 445454444 444 5677899999999 889999999888766543
No 127
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.19 E-value=49 Score=22.62 Aligned_cols=44 Identities=30% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 64 EFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 64 ~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
..|+.|-+.|. ++ ..|-.-.+||..+ |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666665554 45 6788899999999 889999999988776554
No 128
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.88 E-value=63 Score=22.01 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
....|..|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3457877777665544 788899999999 899999999998876543
No 129
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.72 E-value=29 Score=26.23 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 68 EEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 68 eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
+-|..|+.+.++-| -.|..||+.+ |-|...|+.|.+.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45778888887766 5799999999 9999999999998876543
No 130
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.96 E-value=55 Score=23.30 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 047269 66 TEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKN 101 (217)
Q Consensus 66 T~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~ 101 (217)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55667778888899999999999999 766665543
No 131
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=33.92 E-value=45 Score=24.88 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=24.0
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 80 LGNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 80 ~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
.|-...+||..+ |-|...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 366789999999 88999999998876654
No 132
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.28 E-value=53 Score=20.69 Aligned_cols=34 Identities=12% Similarity=-0.019 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHH
Q 047269 68 EEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNH 102 (217)
Q Consensus 68 eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~R 102 (217)
-|.+.|..++..++++.+..|+.+ |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788899999999999999988 5565555444
No 133
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=33.07 E-value=22 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=27.5
Q ss_pred chhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHHHH
Q 047269 33 NRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLIIRL 76 (217)
Q Consensus 33 ~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~~l 76 (217)
..||..+. |+|+.+||..+. + ...+|+||++.+.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 57788888 999999998762 2 236999999887643
No 134
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.81 E-value=42 Score=22.50 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=25.0
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 80 LGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 80 ~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.|-.+..||..+ |-|...|+.+-...+++.
T Consensus 37 ~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467899999999 999999999887766554
No 135
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=32.51 E-value=55 Score=20.52 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 63 GEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 63 ~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
...|+.|-+.|.- + ..|..-..||..+ |-+...|+.+....+++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3467766665544 4 5677899999999 889999999888766543
No 136
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.48 E-value=53 Score=21.76 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 64 EFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 64 ~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+....+++.
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655544 4 5678899999999 899999999888766553
No 137
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.67 E-value=1.4e+02 Score=20.95 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcchhhccccccccccccch---hhhhcc--CCCCCCCCCCHHHHHHHHHHHHHhC-C
Q 047269 9 KGLWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRL---RWLNYL--SPNVKHGEFTEEEENLIIRLHNLLG-N 82 (217)
Q Consensus 9 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~---Rw~~~l--~p~~~~~~WT~eED~~L~~lv~~~G-~ 82 (217)
....|.++-..++.++. -|. .-..||+.+| .+...++. +|..+- .........+.+++..|+.+ ...+ -
T Consensus 4 ~~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred cccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 45688888888887773 454 6789999988 44444432 222211 11112235788888888877 3333 3
Q ss_pred chhhhhccCCC--CCHHHHHHHH
Q 047269 83 RWSLIAGRVPG--RTDNQVKNHW 103 (217)
Q Consensus 83 ~W~~Ia~~lpg--RT~~q~k~Rw 103 (217)
.=..|+..+ | -+...|....
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHH
Confidence 446788877 4 4666665543
No 138
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.51 E-value=70 Score=23.91 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=23.2
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 81 GNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 81 G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
|-....||..+ |-+...|+.+....+++
T Consensus 156 g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 156 GLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp CCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 56799999999 89999999988766544
No 139
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.65 E-value=77 Score=21.52 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHH
Q 047269 67 EEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHW 103 (217)
Q Consensus 67 ~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw 103 (217)
.-|...|..++..++++.+..|+.+ |=+...+..+-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3467788899999999999999998 66666665443
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.06 E-value=92 Score=22.72 Aligned_cols=43 Identities=5% Similarity=0.053 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 68 EEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 68 eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
+-|..|+.++...| -.+..||+.+ |=+...|+.|.+.+....+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34567777777766 5799999999 8899999999998875543
No 141
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.01 E-value=78 Score=19.09 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 71 NLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 71 ~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
..++.++ ..|-.-.+||..+ |-+...|+.+....+++.
T Consensus 4 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3445553 5577789999999 889999999988776553
No 142
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.18 E-value=89 Score=22.16 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 70 ENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 70 D~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
+..++.++-..|-....||..+ |-+...|+.+....+++
T Consensus 30 ~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 30 QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3345555555678899999999 88999999887766544
No 143
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.26 E-value=48 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 047269 70 ENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKN 101 (217)
Q Consensus 70 D~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~ 101 (217)
+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3456777788899999999999 666665533
No 144
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.13 E-value=60 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCchhhhhccCCCCCHHHHH
Q 047269 72 LIIRLHNLLGNRWSLIAGRVPGRTDNQVK 100 (217)
Q Consensus 72 ~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k 100 (217)
.|..++...|..|..+|+.+ |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45566788999999999998 66665543
No 145
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.34 E-value=63 Score=21.67 Aligned_cols=43 Identities=30% Similarity=0.215 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 65 FTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 65 WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+++.
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 555555554 444 5688889999999 899999999988776553
No 146
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.91 E-value=57 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCchhhhhccCCCCCHHHHH
Q 047269 72 LIIRLHNLLGNRWSLIAGRVPGRTDNQVK 100 (217)
Q Consensus 72 ~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k 100 (217)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45566788899999999998 66666553
No 147
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.59 E-value=77 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 68 EEENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 68 eED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
+-|..|+.++...| -.+..||+.+ |-+...|+.|.+.+....+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667788877766 5799999999 8899999999988865543
No 148
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=25.46 E-value=91 Score=22.09 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 047269 71 NLIIRLHNLLGNRWSLIAGRVPGRTDNQVKN 101 (217)
Q Consensus 71 ~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~ 101 (217)
..|-.+....|..|..+|..| |=+..+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 345566677899999999999 666665543
No 149
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.28 E-value=29 Score=26.71 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCcchhhccccccccccccchhhhhcc
Q 047269 15 EEDRILLEYIRVHGRGQWNRIHKVTGLKRCGKSCRLRWLNYL 56 (217)
Q Consensus 15 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 56 (217)
+-|.+|+.+++..|.-.+.+||+.+| -+...|+.|.....
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLR 66 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 45678888888888889999999998 67777887766543
No 150
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.88 E-value=1.8e+02 Score=20.13 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhhHH
Q 047269 62 HGEFTEEEENLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKK 110 (217)
Q Consensus 62 ~~~WT~eED~~L~~lv~~~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~ 110 (217)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34678877776654 3 3688889999999 889999999888766553
No 151
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=23.59 E-value=42 Score=21.18 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcchhhcccccccc
Q 047269 11 LWTQEEDRILLEYIRVHGRGQWNRIHKVTGLKRC 44 (217)
Q Consensus 11 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt 44 (217)
....-|.+.|.+++..+ |+-...|+.+|..|+
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~ 48 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHT 48 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHH
Confidence 35567888889999998 478999999996554
No 152
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.02 E-value=1.1e+02 Score=22.47 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhhHHh
Q 047269 69 EENLIIRLHNLLG-NRWSLIAGRVPGRTDNQVKNHWNTHLCKKL 111 (217)
Q Consensus 69 ED~~L~~lv~~~G-~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k~~ 111 (217)
-|..|+.++...| -.+..||+.+ |-+...|..|...+....+
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4556777777766 5799999999 8899999999998876544
No 153
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.53 E-value=90 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=23.1
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 80 LGNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 80 ~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
.|-....||..+ |-|...|+.+....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356789999999 88999999888766544
No 154
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=21.88 E-value=1.1e+02 Score=23.36 Aligned_cols=29 Identities=10% Similarity=-0.095 Sum_probs=23.4
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHhhH
Q 047269 80 LGNRWSLIAGRVPGRTDNQVKNHWNTHLCK 109 (217)
Q Consensus 80 ~G~~W~~Ia~~lpgRT~~q~k~Rw~~~l~k 109 (217)
.|-...+||..+ |-|...|+.+....+++
T Consensus 202 ~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 202 EELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp SCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 366799999999 89999999887765544
No 155
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=21.71 E-value=34 Score=26.48 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=27.2
Q ss_pred cchhhccccccccccccchhhhhccCCCCCCCCCCHHHHHHHH
Q 047269 32 WNRIHKVTGLKRCGKSCRLRWLNYLSPNVKHGEFTEEEENLII 74 (217)
Q Consensus 32 W~~Ia~~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eED~~L~ 74 (217)
=..||..+. |+|+.++|..+. + ...||+||++.+.
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I-~nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------I-VNDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------C-CCCCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHH
Confidence 367888887 999999998763 2 2359999998875
No 156
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.14 E-value=60 Score=25.44 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=18.2
Q ss_pred cchhhhhccC-CCCCCCCCCHHHHHHHH
Q 047269 48 CRLRWLNYLS-PNVKHGEFTEEEENLII 74 (217)
Q Consensus 48 cr~Rw~~~l~-p~~~~~~WT~eED~~L~ 74 (217)
+-..+..-.. |.-..|-||.++|+.|.
T Consensus 99 VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 99 FLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 3344443333 45678999999999876
Done!