Query 047271
Match_columns 104
No_of_seqs 114 out of 671
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06974 DUF1298: Protein of u 100.0 4.8E-31 1E-35 185.5 10.9 89 2-90 65-153 (153)
2 TIGR02946 acyl_WS_DGAT acyltra 99.8 5.9E-18 1.3E-22 133.6 10.7 80 12-91 366-446 (446)
3 PRK09294 acyltransferase PapA5 88.6 3 6.6E-05 32.8 7.7 71 14-90 336-411 (416)
4 PF00755 Carn_acyltransf: Chol 87.5 5.4 0.00012 33.5 8.9 69 11-89 522-591 (591)
5 COG5435 Uncharacterized conser 71.3 12 0.00026 26.6 4.8 47 46-92 20-66 (147)
6 PRK03762 hypothetical protein; 64.4 37 0.0008 22.5 5.9 43 50-92 42-84 (103)
7 PRK14628 hypothetical protein; 60.6 46 0.00099 22.6 5.9 37 56-92 62-98 (118)
8 PRK00153 hypothetical protein; 58.6 46 0.00099 21.6 5.6 38 56-93 46-85 (104)
9 PF08786 DUF1795: Domain of un 56.5 14 0.00031 24.4 2.9 45 47-91 14-58 (130)
10 PRK11856 branched-chain alpha- 55.8 45 0.00098 26.6 6.1 14 59-72 375-388 (411)
11 PRK14623 hypothetical protein; 53.0 63 0.0014 21.5 5.5 38 55-92 43-80 (106)
12 PRK14621 hypothetical protein; 49.4 78 0.0017 21.2 5.8 37 56-92 47-83 (111)
13 PF07247 AATase: Alcohol acety 48.6 1.4E+02 0.003 23.9 8.3 62 12-76 403-469 (480)
14 PF10105 DUF2344: Uncharacteri 45.3 38 0.00082 24.5 3.8 48 30-83 31-84 (187)
15 COG0718 Uncharacterized protei 43.7 97 0.0021 20.7 5.4 33 60-92 52-86 (105)
16 smart00281 LamB Laminin B doma 42.7 23 0.00051 23.9 2.3 17 52-68 18-34 (127)
17 PF13745 HxxPF_rpt: HxxPF-repe 42.7 73 0.0016 19.0 6.8 61 15-76 28-88 (91)
18 PRK14625 hypothetical protein; 42.3 1E+02 0.0022 20.6 5.7 38 55-92 44-83 (109)
19 PRK14624 hypothetical protein; 40.7 1.1E+02 0.0025 20.6 5.5 38 55-92 48-87 (115)
20 PF05193 Peptidase_M16_C: Pept 40.1 1E+02 0.0022 20.0 5.7 41 47-90 128-170 (184)
21 PRK00587 hypothetical protein; 39.8 1.1E+02 0.0024 20.1 5.5 37 56-92 43-81 (99)
22 PF00198 2-oxoacid_dh: 2-oxoac 39.0 1.6E+02 0.0034 21.8 6.5 52 11-71 145-208 (231)
23 PF02575 YbaB_DNA_bd: YbaB/Ebf 38.6 97 0.0021 19.2 5.3 33 61-93 43-77 (93)
24 PF11363 DUF3164: Protein of u 38.4 89 0.0019 22.9 4.9 26 48-73 71-96 (195)
25 COG3200 AroG 3-deoxy-D-arabino 37.8 30 0.00066 28.3 2.5 38 49-86 126-164 (445)
26 PF01883 DUF59: Domain of unkn 37.4 55 0.0012 19.3 3.1 33 55-87 32-64 (72)
27 PF08990 Docking: Erythronolid 37.2 60 0.0013 16.4 2.8 23 70-92 1-23 (27)
28 PRK14622 hypothetical protein; 34.8 1.3E+02 0.0029 19.7 5.8 37 56-92 44-82 (103)
29 TIGR01349 PDHac_trf_mito pyruv 34.2 1.3E+02 0.0029 24.5 5.8 28 58-85 399-428 (435)
30 PF02599 CsrA: Global regulato 34.1 1E+02 0.0022 18.1 4.4 24 47-70 17-41 (54)
31 PF00052 Laminin_B: Laminin B 33.9 37 0.00081 22.8 2.2 16 52-67 13-28 (136)
32 PRK14627 hypothetical protein; 33.7 1.4E+02 0.003 19.5 5.8 37 56-92 44-82 (100)
33 COG4908 Uncharacterized protei 33.5 2E+02 0.0044 23.9 6.6 70 18-87 362-436 (439)
34 TIGR02671 cas_csx9 CRISPR-asso 32.1 98 0.0021 24.6 4.4 30 63-92 4-33 (377)
35 KOG3317 Translocon-associated 32.0 1.6E+02 0.0035 21.6 5.2 65 5-73 83-149 (188)
36 PRK14587 tRNA pseudouridine sy 31.6 54 0.0012 25.0 2.9 41 51-97 5-45 (256)
37 cd04907 ACT_ThrD-I_2 Second of 31.6 1.3E+02 0.0027 18.7 4.2 32 47-81 25-62 (81)
38 PF02120 Flg_hook: Flagellar h 31.2 1.2E+02 0.0026 18.1 6.7 51 37-96 19-69 (85)
39 PRK11855 dihydrolipoamide acet 30.4 1.6E+02 0.0034 24.7 5.7 27 58-84 511-539 (547)
40 COG4314 NosL Predicted lipopro 30.2 39 0.00085 24.5 1.8 21 13-33 41-61 (176)
41 PRK15336 type III secretion sy 29.0 1.5E+02 0.0032 20.7 4.5 41 50-90 89-129 (135)
42 PF04904 NCD1: NAB conserved r 28.4 52 0.0011 21.1 2.0 25 71-95 34-58 (82)
43 PF04937 DUF659: Protein of un 27.9 2.1E+02 0.0046 19.9 5.8 43 47-89 49-91 (153)
44 PLN02528 2-oxoisovalerate dehy 27.0 2.5E+02 0.0053 22.8 6.1 27 59-85 378-406 (416)
45 TIGR00103 DNA_YbaB_EbfC DNA-bi 26.9 1.8E+02 0.004 18.8 5.0 34 59-92 51-85 (102)
46 PRK14629 hypothetical protein; 25.4 2E+02 0.0044 18.8 5.6 38 56-93 46-85 (99)
47 TIGR03738 PRTRC_C PRTRC system 25.3 56 0.0012 20.1 1.7 49 51-103 7-55 (66)
48 KOG3717 Carnitine O-acyltransf 24.5 1.9E+02 0.0042 25.0 5.2 53 37-92 550-603 (612)
49 KOG3719 Carnitine O-acyltransf 24.5 2.2E+02 0.0047 24.7 5.5 52 37-93 581-632 (638)
50 PRK07400 30S ribosomal protein 24.1 2.8E+02 0.006 21.6 5.8 44 46-92 244-290 (318)
51 PF07335 Glyco_hydro_75: Funga 23.7 1.2E+02 0.0026 21.5 3.4 23 46-68 64-86 (156)
52 PRK11854 aceF pyruvate dehydro 23.5 4.2E+02 0.0091 22.7 7.1 14 58-71 597-610 (633)
53 TIGR00071 hisT_truA pseudourid 22.8 89 0.0019 23.1 2.7 33 52-88 6-38 (227)
54 TIGR01347 sucB 2-oxoglutarate 22.8 3.6E+02 0.0078 21.8 6.3 28 59-86 366-395 (403)
55 PF09658 Cas_Csx9: CRISPR-asso 22.3 1.7E+02 0.0037 23.4 4.2 30 63-92 4-33 (377)
56 PRK01236 S-adenosylmethionine 22.1 2.7E+02 0.0059 19.1 4.9 37 48-85 66-102 (131)
57 PRK14626 hypothetical protein; 22.0 2.5E+02 0.0054 18.6 5.7 38 55-92 47-86 (110)
58 PF06200 tify: tify domain; I 21.9 83 0.0018 17.0 1.8 9 53-61 10-18 (36)
59 KOG4743 Cyclin-dependent kinas 21.8 1.3E+02 0.0029 22.3 3.3 24 71-94 26-49 (195)
60 cd02570 PseudoU_synth_EcTruA P 21.7 86 0.0019 23.2 2.4 33 52-88 2-34 (239)
61 PRK11857 dihydrolipoamide acet 21.2 2.3E+02 0.0049 22.1 4.7 28 58-85 269-298 (306)
62 PRK05704 dihydrolipoamide succ 20.9 2.9E+02 0.0062 22.4 5.4 28 58-85 369-398 (407)
63 PRK03124 S-adenosylmethionine 20.9 2.8E+02 0.0061 18.8 4.8 37 48-85 65-101 (127)
64 PF07177 Neuralized: Neuralize 20.8 55 0.0012 19.9 1.0 13 54-66 55-67 (69)
65 cd07220 Pat_PNPLA2 Patatin-lik 20.2 3E+02 0.0065 20.7 5.1 70 18-89 143-244 (249)
No 1
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=99.97 E-value=4.8e-31 Score=185.45 Aligned_cols=89 Identities=35% Similarity=0.611 Sum_probs=82.9
Q ss_pred hhHhhhhhcCCceEEEeccCCCccceEEcCceEeEEeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHH
Q 047271 2 AAAIAHRVLSNTTMAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIE 81 (104)
Q Consensus 2 ~~~~~~r~~~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~ 81 (104)
+..+++|+..++|++|||||||++|+||+|++|++++|.+.+.++||+|+++||+|+++||+++|++++||++.|+++|+
T Consensus 65 ~~~l~~~~~~~~~~viSNVPGP~~~l~~~G~~v~~i~~~~~~~~~~L~itv~SY~g~l~~gi~ad~~~vpD~~~l~~~~~ 144 (153)
T PF06974_consen 65 ARALSNRLSPKANLVISNVPGPQEPLYFAGARVEYIYPSPLGDGQALNITVFSYAGKLDFGIVADRDAVPDPQRLADCFE 144 (153)
T ss_pred HHHHHhhccCcceEEEecCCCChhheEECCeeeEEEEeeeecCCcceEEEEEEeCCEEEEEEEEccccCCCHHHHHHHHH
Confidence 35678888999999999999999999999999998887666777899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 047271 82 ESLKVIKDC 90 (104)
Q Consensus 82 ~al~eL~~a 90 (104)
++|+||++|
T Consensus 145 ~~l~eL~~A 153 (153)
T PF06974_consen 145 EALEELKEA 153 (153)
T ss_pred HHHHHHHcC
Confidence 999999875
No 2
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=99.76 E-value=5.9e-18 Score=133.58 Aligned_cols=80 Identities=28% Similarity=0.448 Sum_probs=71.0
Q ss_pred CceEEEeccCCCccceEEcCceEeEEec-cccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047271 12 NTTMAFSNVVGPLEEISFYGHPMAYLAP-SVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 12 ~~~~viSNVPGP~~pl~l~Ga~v~~~~p-~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a 90 (104)
.+|+++||||||+.+++++|+++..++| .+...+++++++++||+|++++++.+|++++||++.|.++|+++|+||.++
T Consensus 366 ~~~~~~SNvpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy~g~l~~~~~~d~~~~~d~~~l~~~~~~~l~~l~~~ 445 (446)
T TIGR02946 366 LFNLVISNVPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTSYNGQLDFGLLADRDAVPDPQELADALEAALEELEAA 445 (446)
T ss_pred ceeEEEeCCCCCCcccEecCeeEEEeeccccccCCCeEEEEEEecCCeEEEEEeechhhCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999996544 233344699999999999999999999999999999999999999999875
Q ss_pred H
Q 047271 91 V 91 (104)
Q Consensus 91 ~ 91 (104)
+
T Consensus 446 ~ 446 (446)
T TIGR02946 446 A 446 (446)
T ss_pred C
Confidence 3
No 3
>PRK09294 acyltransferase PapA5; Provisional
Probab=88.62 E-value=3 Score=32.76 Aligned_cols=71 Identities=6% Similarity=-0.108 Sum_probs=43.6
Q ss_pred eEEEecc---CCCccceEEc-CceEeE-EeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 047271 14 TMAFSNV---VGPLEEISFY-GHPMAY-LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIK 88 (104)
Q Consensus 14 ~~viSNV---PGP~~pl~l~-Ga~v~~-~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~ 88 (104)
++.+||+ |+|+.|=.+. + .+.. +.-..... ....+++||+|++.|++...-..+ +...+++++-+..+.
T Consensus 336 ~v~~Snlg~~~~~~~p~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~f~~~~~~~---~~~~~~~~~~~~~~~ 409 (416)
T PRK09294 336 VVFITNLGVAPPMRTPPGLELE-DIHSQFYCAISVP--IGGYSCGVFAGRLLIEHHGHIAAP---GKSLEAIRELLCTVP 409 (416)
T ss_pred eEEEecCCcCCCCCCCCCeEEE-eeeeeeeecccCc--eeEEEEeeecCceeeeeccCcCCc---cchHHHHHHHHHhhh
Confidence 5677776 5555553332 1 2221 22222221 235899999999999999876544 377788888777765
Q ss_pred HH
Q 047271 89 DC 90 (104)
Q Consensus 89 ~a 90 (104)
..
T Consensus 410 ~~ 411 (416)
T PRK09294 410 SE 411 (416)
T ss_pred hh
Confidence 43
No 4
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=87.52 E-value=5.4 Score=33.48 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=44.4
Q ss_pred CCceEEEeccCCCccceEEcCceEeEEeccccCCCceeEEEEeeeCCEEEEEEEecCC-CCCCHHHHHHHHHHHHHHHHH
Q 047271 11 SNTTMAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPN-VIPDPHLLCKDIEESLKVIKD 89 (104)
Q Consensus 11 ~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~-~vpD~~~l~~~l~~al~eL~~ 89 (104)
.+..+..|+++++..... .++|+.. . |.+|+=.-..+.+.|++++-++ ---|.++|.+.|++++.+|++
T Consensus 522 ~~~~lsTS~~~~~~~~~~-------gfgpv~~-d--GyGi~Y~i~~~~i~f~iss~~~~~~t~~~~f~~~l~~al~dm~d 591 (591)
T PF00755_consen 522 SNFVLSTSQVPSPALSGG-------GFGPVVP-D--GYGICYNIQPDSISFSISSFKSCPETSSERFAKALEQALRDMRD 591 (591)
T ss_dssp TS-SEEEEEEEESSSEEE-------E---SST-T--SEEEEEEEESSEEEEEEEEETTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred CCceeecccccccccccc-------cccCCCC-c--ceEEEEEecCCeEEEEEEecCCCCcccHHHHHHHHHHHHHHHhC
Confidence 555566677766542211 2777533 2 4555555569999999999775 345999999999999999974
No 5
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=71.28 E-value=12 Score=26.57 Aligned_cols=47 Identities=4% Similarity=0.157 Sum_probs=43.2
Q ss_pred ceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 46 HALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 46 ~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
+.++|=+.+=+|+-.++++..++.++--+.+.+++.+.+..|++-..
T Consensus 20 rSvNvf~~~~~gt~~~sfvIsRd~~~~g~~~~~y~~rql~~l~k~Lp 66 (147)
T COG5435 20 RSVNVFVSGDNGTSGFSFVISRDPLEPGDTFPEYVQRQLALLRKQLP 66 (147)
T ss_pred ceEEEEEecCCCcceeEEEEecCCCCCCCcHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999999999999999999999999987653
No 6
>PRK03762 hypothetical protein; Provisional
Probab=64.35 E-value=37 Score=22.50 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=33.5
Q ss_pred EEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 50 IHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 50 i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
|.|.--+..-...+.-|++++.|.+.|.+.+..++++-.+.+.
T Consensus 42 VkV~~nG~~~i~~i~Id~~ll~D~e~LeDLI~aAiNdA~~k~~ 84 (103)
T PRK03762 42 VSVSANGKGEVIDISIDDSLLEDKESLQILLISAINDVYKMVE 84 (103)
T ss_pred EEEEEEcCceEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333346666678899999999999999999999988776554
No 7
>PRK14628 hypothetical protein; Provisional
Probab=60.56 E-value=46 Score=22.60 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=30.3
Q ss_pred CCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 56 VNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 56 ~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
+..--..+.-|++++.|.+.|.+.+..++++-.+.+.
T Consensus 62 G~~ei~~I~Idp~~l~D~E~LeDLIiaA~NdA~~ka~ 98 (118)
T PRK14628 62 CDRRVKDIEIDEDLKEDFETLKDLLIAGMNEVMEKIE 98 (118)
T ss_pred cCceEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555568889999999999999999999998766554
No 8
>PRK00153 hypothetical protein; Validated
Probab=58.59 E-value=46 Score=21.65 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=28.4
Q ss_pred CCEEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHhh
Q 047271 56 VNKMTFCVAVDPNVI--PDPHLLCKDIEESLKVIKDCVVE 93 (104)
Q Consensus 56 ~g~l~~~v~ad~~~v--pD~~~l~~~l~~al~eL~~a~~~ 93 (104)
+..-...+.-|++++ .|++.|.+.+.+++++-.+.+.+
T Consensus 46 G~~~v~~i~Id~~ll~~~d~e~LedlI~~A~n~A~~~~~~ 85 (104)
T PRK00153 46 GKKEVKRVKIDPSLVDPEDVEMLEDLILAAFNDALRKAEE 85 (104)
T ss_pred cCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 444445667788888 59999999999998887766543
No 9
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=56.50 E-value=14 Score=24.42 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=28.8
Q ss_pred eeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 047271 47 ALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCV 91 (104)
Q Consensus 47 ~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~ 91 (104)
.++|-+.+=.+.-..+++..++.+|+-+.|.+++++.++.|++..
T Consensus 14 t~nv~~~~~~~~~~~slvIsR~~l~~g~tl~~~~~~q~~~l~~~l 58 (130)
T PF08786_consen 14 TMNVLVLPDSGGSGPSLVISRDPLPDGETLEDYLQRQLAQLRKQL 58 (130)
T ss_dssp -BEEEEE--BTTB-EEEEEEEE---TTS-HHHHHHHHHHHHHCCS
T ss_pred eEEEEEccCCCCCcceEEEEeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 566665555554567777788889999999999999999997644
No 10
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=55.80 E-value=45 Score=26.64 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.3
Q ss_pred EEEEEEecCCCCCC
Q 047271 59 MTFCVAVDPNVIPD 72 (104)
Q Consensus 59 l~~~v~ad~~~vpD 72 (104)
+.+++++|..++.-
T Consensus 375 m~lslt~DHRviDG 388 (411)
T PRK11856 375 MPLSLSFDHRVIDG 388 (411)
T ss_pred EEEeEEeehhhcCc
Confidence 88999999999953
No 11
>PRK14623 hypothetical protein; Provisional
Probab=52.99 E-value=63 Score=21.51 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=29.1
Q ss_pred eCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 55 YVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 55 Y~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
-+..=-..+.-|++++.|.+.|.+.+..++++-.+.+.
T Consensus 43 ~G~~~i~~i~Idp~~l~D~E~LeDLI~aAvn~A~~k~~ 80 (106)
T PRK14623 43 TANREIKSISIDDELLEDKEQLEDYLVLTLNKAIEKAT 80 (106)
T ss_pred EcCccEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444467788899999999999999999888665544
No 12
>PRK14621 hypothetical protein; Provisional
Probab=49.35 E-value=78 Score=21.20 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 56 VNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 56 ~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
+..=-..+..|++++.|.+.|.+.+..++++-.+.+.
T Consensus 47 G~~~i~~i~Idp~lldD~e~LeDLI~aA~NdA~~ka~ 83 (111)
T PRK14621 47 GKQKLLSLAIDPEIMDDVEMVQDLVVAAVNSALEESA 83 (111)
T ss_pred cCceEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333467888999999999999999999888665544
No 13
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=48.55 E-value=1.4e+02 Score=23.87 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=41.5
Q ss_pred CceEEEeccCCCccceEEcCceEeEEec----cccCCCceeEEEEeeeC-CEEEEEEEecCCCCCCHHHH
Q 047271 12 NTTMAFSNVVGPLEEISFYGHPMAYLAP----SVYGHPHALTIHFQSYV-NKMTFCVAVDPNVIPDPHLL 76 (104)
Q Consensus 12 ~~~~viSNVPGP~~pl~l~Ga~v~~~~p----~~~~~~~~L~i~v~SY~-g~l~~~v~ad~~~vpD~~~l 76 (104)
..++.|||+--=.. -.=++.++..+.+ ...+. .+.+.+.|-. |.|++++.--+.++.+.+..
T Consensus 403 ~~t~evSNLG~~~~-~~~~~~~I~~~~Fsq~~~~~~~--~f~~~viS~~~G~L~i~~s~~~~~~~~~~~~ 469 (480)
T PF07247_consen 403 RSTFEVSNLGVFDF-EENGKWKIEDMVFSQSAGVIGS--AFSFNVISTKGGGLNISISWQEGIVEDEEME 469 (480)
T ss_pred CCcEEEEeCCcccC-CCCCCeEEEEEEEeCCCCCCcC--CEEEEEEEcCCCceEEEEEEeCCcccccchH
Confidence 57889999843332 2233345553222 22344 7899999986 89999999999999865544
No 14
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=45.33 E-value=38 Score=24.51 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=31.8
Q ss_pred cCceEeE---Eec---cccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHH
Q 047271 30 YGHPMAY---LAP---SVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEES 83 (104)
Q Consensus 30 ~Ga~v~~---~~p---~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~a 83 (104)
+|-|+.| |.| +..+. +|.+++.|++..+.+-+..+ + |++.+.+.+.+.
T Consensus 31 A~lp~a~SqGFnP~Pkisf~~--aLpvGv~S~~E~~di~l~~~---~-~~~~~~~rLn~~ 84 (187)
T PF10105_consen 31 AGLPVAYSQGFNPHPKISFAP--ALPVGVESLAEYMDIELEED---I-DPEEVLERLNAV 84 (187)
T ss_pred cCCCeeecCCCCCCcceeecc--cccCceeeccEEEEEEEecC---C-CHHHHHHHHHHh
Confidence 4556664 555 22344 89999999999999988653 3 566655555444
No 15
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.72 E-value=97 Score=20.69 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.7
Q ss_pred EEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 60 TFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 60 ~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
...|..|++++. |.+.|.+.+..|+++-.+.+.
T Consensus 52 v~~v~Idp~l~dpeD~E~LeDLi~aA~ndA~~kv~ 86 (105)
T COG0718 52 VKSVEIDPSLLDPEDKEMLEDLILAAFNDAKKKVE 86 (105)
T ss_pred EEEEEeCHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 457788899887 789999999999988776554
No 16
>smart00281 LamB Laminin B domain.
Probab=42.73 E-value=23 Score=23.86 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.9
Q ss_pred EeeeCCEEEEEEEecCC
Q 047271 52 FQSYVNKMTFCVAVDPN 68 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~~ 68 (104)
+.||+|+|++.+..+..
T Consensus 18 ~~SYGg~L~ytl~~~~~ 34 (127)
T smart00281 18 VTSYGGKLRYTLSFDGR 34 (127)
T ss_pred eeccCCEEEEEEEEEcc
Confidence 68999999999988754
No 17
>PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A.
Probab=42.67 E-value=73 Score=18.98 Aligned_cols=61 Identities=8% Similarity=0.114 Sum_probs=32.3
Q ss_pred EEEeccCCCccceEEcCceEeEEeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHH
Q 047271 15 MAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLL 76 (104)
Q Consensus 15 ~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l 76 (104)
+.++-.+.+...+.++|.+++.+..-..+..--|.+.+....+.+.+.+.-+.+.. +.+.+
T Consensus 28 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~Y~~~lf-~~~ti 88 (91)
T PF13745_consen 28 VMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLEYNTDLF-SEETI 88 (91)
T ss_dssp EEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEEEETTT---HHHH
T ss_pred eEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEEEEhHhC-CHHHH
Confidence 34444444556688899888853322222223799999999999999999999887 44443
No 18
>PRK14625 hypothetical protein; Provisional
Probab=42.28 E-value=1e+02 Score=20.58 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=28.9
Q ss_pred eCCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 55 YVNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 55 Y~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
-+..=...+.-|++++. |.+.|.+.+..++++-.+.+.
T Consensus 44 ~G~~~v~~I~Idp~ll~~eD~e~LeDLI~aA~NdA~~k~~ 83 (109)
T PRK14625 44 MGNGELVRVLMDESLVQPGEGEVIADLIVAAHADAKKKLD 83 (109)
T ss_pred ecCceEEEEEECHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 44445567888899885 799999999999888766554
No 19
>PRK14624 hypothetical protein; Provisional
Probab=40.75 E-value=1.1e+02 Score=20.60 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=28.9
Q ss_pred eCCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 55 YVNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 55 Y~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
-+..-...+..|++++. |++.|.+++..|+++-.+.+.
T Consensus 48 nG~~~i~~i~Idp~lld~eD~E~LeDLI~aAvNdA~~k~~ 87 (115)
T PRK14624 48 TGEGQITNVFINKQLFDADDNKMLEDLVMAATNDALKKAK 87 (115)
T ss_pred EcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 44445567788889983 899999999999988766554
No 20
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=40.07 E-value=1e+02 Score=19.96 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=28.2
Q ss_pred eeEEEEeeeC--CEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047271 47 ALTIHFQSYV--NKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 47 ~L~i~v~SY~--g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a 90 (104)
++.....+|. |.+.|.+.+++. +++.+.+.+.+.++.|.+.
T Consensus 128 ~v~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~~l~~~ 170 (184)
T PF05193_consen 128 SVSASNSSYRDSGLFSISFQVTPE---NLDEAIEAILQELKRLREG 170 (184)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEGG---GHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeeccccceEEEEEEEcCcc---cHHHHHHHHHHHHHHHHHc
Confidence 4555666666 666676777665 7777777777777777665
No 21
>PRK00587 hypothetical protein; Provisional
Probab=39.79 E-value=1.1e+02 Score=20.12 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=28.1
Q ss_pred CCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 56 VNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 56 ~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
+..=-.++.-||+++. |++.|.+.+..++++-.+.+.
T Consensus 43 G~~~i~~i~Idp~lld~eD~E~LeDLI~aA~NdA~~k~~ 81 (99)
T PRK00587 43 GNLNIEKIEINKELIDPEDKETLQDMLREAINEAISITC 81 (99)
T ss_pred cCccEEEEEECHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3333456777888885 899999999999998876654
No 22
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=39.03 E-value=1.6e+02 Score=21.81 Aligned_cols=52 Identities=17% Similarity=0.071 Sum_probs=29.2
Q ss_pred CCceEEEeccCCCccceEEcCceEeEEec-cccCCCceeEEEEe-----------eeCCEEEEEEEecCCCCC
Q 047271 11 SNTTMAFSNVVGPLEEISFYGHPMAYLAP-SVYGHPHALTIHFQ-----------SYVNKMTFCVAVDPNVIP 71 (104)
Q Consensus 11 ~~~~~viSNVPGP~~pl~l~Ga~v~~~~p-~~~~~~~~L~i~v~-----------SY~g~l~~~v~ad~~~vp 71 (104)
...+++|||+-.-. +.++.| +.++.---|+++-. .-...+.++++.|..++.
T Consensus 145 ~g~TftisNlG~~g---------~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvid 208 (231)
T PF00198_consen 145 QGGTFTISNLGMFG---------VESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVID 208 (231)
T ss_dssp SS-SEEEEEGGGTT----------SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-
T ss_pred hccceeeeecCCCC---------cceeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEc
Confidence 55789999986532 344445 22222113444433 235678999999999995
No 23
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=38.60 E-value=97 Score=19.21 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=24.1
Q ss_pred EEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHhh
Q 047271 61 FCVAVDPNVI--PDPHLLCKDIEESLKVIKDCVVE 93 (104)
Q Consensus 61 ~~v~ad~~~v--pD~~~l~~~l~~al~eL~~a~~~ 93 (104)
..+.-|++.+ -|++.|.+.+.+++++-.+.+.+
T Consensus 43 ~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~~a~~ 77 (93)
T PF02575_consen 43 VDIEIDPSALRPLDPEELEDLIVEAVNDAQKKARE 77 (93)
T ss_dssp EEEEE-GGGGCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEehHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777 68999999999999988776653
No 24
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=38.40 E-value=89 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=19.7
Q ss_pred eEEEEeeeCCEEEEEEEecCCCCCCH
Q 047271 48 LTIHFQSYVNKMTFCVAVDPNVIPDP 73 (104)
Q Consensus 48 L~i~v~SY~g~l~~~v~ad~~~vpD~ 73 (104)
=++|+.||+|+..|.+......-=|+
T Consensus 71 Gn~Tl~sfDG~~kV~i~~~~~~~Fde 96 (195)
T PF11363_consen 71 GNVTLTSFDGRYKVTIAVQDRISFDE 96 (195)
T ss_pred CcEEEEEeCCCEEEEEEecccCCcCh
Confidence 38999999999999887755444343
No 25
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=37.82 E-value=30 Score=28.29 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=31.8
Q ss_pred EEEEeeeCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHH
Q 047271 49 TIHFQSYVNKMTFCVAVDPNV-IPDPHLLCKDIEESLKV 86 (104)
Q Consensus 49 ~i~v~SY~g~l~~~v~ad~~~-vpD~~~l~~~l~~al~e 86 (104)
.+++-||.|.+.=|+-.|.+. +|||+++.+....+-..
T Consensus 126 ~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsaAt 164 (445)
T COG3200 126 GVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSAAT 164 (445)
T ss_pred CeeccccccccccCccCChhhcCCCHHHHHHHHHHHHHH
Confidence 589999999999998877654 89999999988766554
No 26
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=37.40 E-value=55 Score=19.30 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=24.9
Q ss_pred eCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 047271 55 YVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVI 87 (104)
Q Consensus 55 Y~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL 87 (104)
-+|+++|.+.......|-.+.|.+.+++++..+
T Consensus 32 ~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l 64 (72)
T PF01883_consen 32 EGGKVSVSLELPTPACPAAEPLREEIREALKAL 64 (72)
T ss_dssp CTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTS
T ss_pred ECCEEEEEEEECCCCchHHHHHHHHHHHHHHhC
Confidence 459999999998777777888888888887654
No 27
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=37.24 E-value=60 Score=16.44 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 047271 70 IPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 70 vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
|++-+.|.+++..+-.||.++-.
T Consensus 1 M~~e~kLr~YLkr~t~eL~~~r~ 23 (27)
T PF08990_consen 1 MANEDKLRDYLKRVTAELRRARR 23 (27)
T ss_dssp ---HCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999987643
No 28
>PRK14622 hypothetical protein; Provisional
Probab=34.83 E-value=1.3e+02 Score=19.70 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.6
Q ss_pred CCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 56 VNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 56 ~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
+..=...+.-||+++. |.+.|.+.+..++++-.+.+.
T Consensus 44 G~~~v~~i~Idp~~l~~ed~e~LeDLI~aA~N~A~~k~~ 82 (103)
T PRK14622 44 GKCEVTRLTVDPKAVDPNDKAMLEDLVTAAVNAAVEKAR 82 (103)
T ss_pred cCceEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4444456677788884 888999999998887665443
No 29
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=34.23 E-value=1.3e+02 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEEEecCCCCCC--HHHHHHHHHHHHH
Q 047271 58 KMTFCVAVDPNVIPD--PHLLCKDIEESLK 85 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD--~~~l~~~l~~al~ 85 (104)
.+.++++.|..++.- ..+|...+.+-++
T Consensus 399 ~m~lsls~DHRviDGa~aa~Fl~~lk~~lE 428 (435)
T TIGR01349 399 IMSVTLSCDHRVIDGAVGAEFLKSFKKYLE 428 (435)
T ss_pred eEEEeEeecchhhCcHHHHHHHHHHHHHHh
Confidence 478999999999953 3445555544444
No 30
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=34.15 E-value=1e+02 Score=18.07 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=19.3
Q ss_pred eeEEEEeee-CCEEEEEEEecCCCC
Q 047271 47 ALTIHFQSY-VNKMTFCVAVDPNVI 70 (104)
Q Consensus 47 ~L~i~v~SY-~g~l~~~v~ad~~~v 70 (104)
.+.|++++. +|++.+|+.|.+++-
T Consensus 17 ~I~I~Vl~i~~~~VklgI~AP~~v~ 41 (54)
T PF02599_consen 17 DIEITVLEISGGQVKLGIDAPKEVP 41 (54)
T ss_dssp TEEEEEEEEETTEEEEEEEECTTSE
T ss_pred CEEEEEEEEcCCEEEEEEECCCCCE
Confidence 567777777 789999999988653
No 31
>PF00052 Laminin_B: Laminin B (Domain IV); InterPro: IPR000034 Laminins represent a distinct family of extracellular matrix proteins present only in basement membranes in almost every animal tissue. They are heterotrimeric molecules composed of alpha, beta and gamma subunits (formerly A, B1, and B2, respectively []) and form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains, [, ]. Most of the globular domains of the short arms correspond to one of two different motifs, the 200-residue laminin N-terminal (domain VI) (LN) module and the 250-residue laminin domain IV (L4) module []. All alpha chains share a unique C-terminal G domain which consists of five laminin G modules. The laminins can self-assemble, bind to other matrix macromolecules, and have unique and shared cell interactions mediated by integrins, dystroglycan, and other receptors. There are at least 14 laminin isoforms that regulate a variety of cellular functions including cell adhesion, migration, proliferation, signalling and differentiation [, , ]. The laminin B domain (also known as domain IV) is an extracellular module of unknown function. It is found in a number of different proteins that include, heparan sulphate proteoglycan from basement membrane, a laminin-like protein from Caenorhabditis elegans and laminin. Laminin IV domain is not found in short laminin chains (alpha4 or beta3).
Probab=33.92 E-value=37 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=14.0
Q ss_pred EeeeCCEEEEEEEecC
Q 047271 52 FQSYVNKMTFCVAVDP 67 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~ 67 (104)
+.||+|.|++.+..+.
T Consensus 13 l~SYGg~L~ytl~~~~ 28 (136)
T PF00052_consen 13 LTSYGGYLRYTLSYDG 28 (136)
T ss_pred ceecCCeEEEEEEEec
Confidence 6899999999997776
No 32
>PRK14627 hypothetical protein; Provisional
Probab=33.68 E-value=1.4e+02 Score=19.51 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=27.4
Q ss_pred CCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 56 VNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 56 ~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
+..=-..+..||+++. |++.|.+.+..++++-.+.+.
T Consensus 44 G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A~~k~~ 82 (100)
T PRK14627 44 GHREVQSITISPEVVDPDDVEMLQDLLLVAINDASRKAQ 82 (100)
T ss_pred cCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4444556777888884 888999999999888765544
No 33
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=33.45 E-value=2e+02 Score=23.92 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=43.4
Q ss_pred eccCCCcc-ceEEcCceEe---E-EeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 047271 18 SNVVGPLE-EISFYGHPMA---Y-LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVI 87 (104)
Q Consensus 18 SNVPGP~~-pl~l~Ga~v~---~-~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL 87 (104)
||+-=-.+ ..-|+|-... + +.|........|+++..-|.++|++++.--.+==.+.+.+.+.|...|.++
T Consensus 362 TNiG~id~~~~~f~g~~~d~~~~~~~p~~~ap~Fpl~~tt~g~~~tLtinf~r~~dk~~~~~~fl~~f~~~l~~~ 436 (439)
T COG4908 362 TNIGIIDEEVPPFGGEAEDTDAFFFGPCKYAPVFPLGVTTYGYKLTLTINFYRTNDKKKITGHFLDLFAKELRET 436 (439)
T ss_pred ccccccccccCCcCceecccceEEEeecccCccceeEEEEeccceEEEEEEEeecCcchHHHHHHHHHHhHhHHH
Confidence 66644432 2334444444 3 677655554578888888999999999543333334666777777777665
No 34
>TIGR02671 cas_csx9 CRISPR-associated protein (provisional), Csx9 family. Members of this family, so far, are archaeal proteins found in CRISPR-associated (cas) gene regions. So far, this rare cas protein is found in only three genomes: Pyrococcus horikoshii shinkaj OT3, Pyrococcus abyssi GE5, and Thermococcus kodakarensis KOD1. In each case it is found immediately upstream of cas3 in loci that resemble the Apern type but lack Csa1 and Csa4 genes.
Probab=32.08 E-value=98 Score=24.61 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=26.5
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 63 VAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 63 v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
++.|...=||++.|++.++.+++.|++.+.
T Consensus 4 vvmdag~epd~~~lad~~e~~~dslk~r~~ 33 (377)
T TIGR02671 4 VVMDAGLEPDPEELADALEGALDSLKSRAM 33 (377)
T ss_pred EEeccCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 466788889999999999999999998765
No 35
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.02 E-value=1.6e+02 Score=21.64 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=49.2
Q ss_pred hhhhhcCCceEEEeccCCCccceEEcCceEeE--EeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCH
Q 047271 5 IAHRVLSNTTMAFSNVVGPLEEISFYGHPMAY--LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDP 73 (104)
Q Consensus 5 ~~~r~~~~~~~viSNVPGP~~pl~l~Ga~v~~--~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~ 73 (104)
-+.|+..+.|+.=|=|--|+.+-+|+|++.+- ..|- . . ++.++..||-|+..+=....++.=-|+
T Consensus 83 swerIpags~vsHsivl~prv~g~f~~t~atVty~~~e-~-g--~~~~~~ts~~~~gyila~re~~rr~~~ 149 (188)
T KOG3317|consen 83 SWERIPAGSNVSHSIVLRPRVKGVFNGTPATVTYRIPE-K-G--ALQEAYTSPPGPGYILAQREPDRRFDP 149 (188)
T ss_pred ceeecCCCCceEEEEEEeecccceeccCceEEEEEcCC-C-C--ceeEEeecCCCCcceeeecCcccccCh
Confidence 35677788888888899999999999999884 3332 2 2 678999999999988666555544455
No 36
>PRK14587 tRNA pseudouridine synthase ACD; Provisional
Probab=31.62 E-value=54 Score=24.98 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=31.0
Q ss_pred EEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhhcCcc
Q 047271 51 HFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVVERGLI 97 (104)
Q Consensus 51 ~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~~~~~~ 97 (104)
-.++|.|+-.-|..-.+. .+.+.|++++..+...++++|.+
T Consensus 5 l~i~YdGt~f~G~Q~Q~~------TVq~~Le~aL~~i~~~agRTDaG 45 (256)
T PRK14587 5 YRIAYDGTLFYGFTGHPN------SLEPALRRVFGEILGRGSRTDPG 45 (256)
T ss_pred EEEEECCCcccceecCcc------hHHHHHHHHHHHhccCccCCccC
Confidence 357899999999987643 68888888888776556666644
No 37
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.60 E-value=1.3e+02 Score=18.66 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=21.1
Q ss_pred eeEEEEeeeC------CEEEEEEEecCCCCCCHHHHHHHHH
Q 047271 47 ALTIHFQSYV------NKMTFCVAVDPNVIPDPHLLCKDIE 81 (104)
Q Consensus 47 ~L~i~v~SY~------g~l~~~v~ad~~~vpD~~~l~~~l~ 81 (104)
.-+||-++|. |.+-+|+..... |.+.+.+.++
T Consensus 25 ~~~ITeF~YR~~~~~~a~vlvGi~~~~~---~~~~l~~~l~ 62 (81)
T cd04907 25 KWNITLFHYRNQGSDYGRVLVGIQVPDA---DLDELKERLD 62 (81)
T ss_pred CCeEeEEEEecCCCCceeEEEEEEeChH---HHHHHHHHHH
Confidence 4589999994 568889887532 4444444443
No 38
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=31.22 E-value=1.2e+02 Score=18.14 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=36.4
Q ss_pred EeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 047271 37 LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVVERGL 96 (104)
Q Consensus 37 ~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~~~~~ 96 (104)
+-|--.| .+.|.+--+++.+++-+.++. ....+.|++.+.+|++.....+.
T Consensus 19 L~p~~LG---~v~v~l~~~~~~l~v~~~~~~------~~~~~~L~~~~~~L~~~L~~~G~ 69 (85)
T PF02120_consen 19 LDPPELG---SVEVKLRLQGGNLSVQFTAEN------PETKELLRQNLPELKERLQAQGL 69 (85)
T ss_dssp -SSGGG-----EEEEEEEETTEEEEEEE--S------SHHHHHHHHTHHHHHHHHHTTT-
T ss_pred EcccccC---cEEEEEEEeCCEEEEEEEECC------HHHHHHHHHHHHHHHHHHHHCCC
Confidence 5564455 688889899999999999966 34568889999999888877663
No 39
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=30.42 E-value=1.6e+02 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=16.9
Q ss_pred EEEEEEEecCCCCCC--HHHHHHHHHHHH
Q 047271 58 KMTFCVAVDPNVIPD--PHLLCKDIEESL 84 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD--~~~l~~~l~~al 84 (104)
.+.+++++|..++.- ..+|.+.|.+.+
T Consensus 511 ~m~lslt~DHRviDG~~aa~Fl~~l~~~l 539 (547)
T PRK11855 511 MLPLSLSYDHRVIDGATAARFTNYLKQLL 539 (547)
T ss_pred EEEEeEEccchhcCcHHHHHHHHHHHHHH
Confidence 467999999999953 233444444433
No 40
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=30.24 E-value=39 Score=24.48 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.9
Q ss_pred ceEEEeccCCCccceEEcCce
Q 047271 13 TTMAFSNVVGPLEEISFYGHP 33 (104)
Q Consensus 13 ~~~viSNVPGP~~pl~l~Ga~ 33 (104)
+.+.++--|||..++++.|.+
T Consensus 41 cgMnl~ehpGPKgQi~l~g~~ 61 (176)
T COG4314 41 CGMNLLEHPGPKGQIILNGKP 61 (176)
T ss_pred cceeeecCCCCcceEeeCCCC
Confidence 456789999999999999998
No 41
>PRK15336 type III secretion system chaperone SpaK; Provisional
Probab=29.01 E-value=1.5e+02 Score=20.66 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=34.4
Q ss_pred EEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047271 50 IHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 50 i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a 90 (104)
.++..-+|.+.+.....++.+-|++.|++.+++=|+.|..-
T Consensus 89 p~L~~~d~~LeL~A~v~~~~L~d~~~Fa~al~~Ff~~l~~~ 129 (135)
T PRK15336 89 LLLGEQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVF 129 (135)
T ss_pred eEEEecCCeEEEEEEEchhHhcCHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999999988887653
No 42
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.39 E-value=52 Score=21.08 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcC
Q 047271 71 PDPHLLCKDIEESLKVIKDCVVERG 95 (104)
Q Consensus 71 pD~~~l~~~l~~al~eL~~a~~~~~ 95 (104)
.|.+.|+++-+++|.|+.+.++...
T Consensus 34 DDvqQL~~~~e~eF~eim~lvGM~s 58 (82)
T PF04904_consen 34 DDVQQLCEAGEEEFLEIMALVGMAS 58 (82)
T ss_pred hhHHHHHhcChHHHHHHHHHhCccC
Confidence 4889999999999999999887543
No 43
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=27.88 E-value=2.1e+02 Score=19.87 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=33.4
Q ss_pred eeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 047271 47 ALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKD 89 (104)
Q Consensus 47 ~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~ 89 (104)
=+++.+.+=.|.+.+-..-..+...+.+.|.+.+.+.++|+..
T Consensus 49 lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG~ 91 (153)
T PF04937_consen 49 LINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEVGE 91 (153)
T ss_pred EEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHhhh
Confidence 3677777778888877665556667999999999999998743
No 44
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=26.98 E-value=2.5e+02 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=18.0
Q ss_pred EEEEEEecCCCCCC--HHHHHHHHHHHHH
Q 047271 59 MTFCVAVDPNVIPD--PHLLCKDIEESLK 85 (104)
Q Consensus 59 l~~~v~ad~~~vpD--~~~l~~~l~~al~ 85 (104)
+.++++.|..++.- ..+|...+.+-++
T Consensus 378 m~lslt~DHRviDGa~aa~Fl~~lk~~le 406 (416)
T PLN02528 378 MTVTIGADHRVLDGATVARFCNEWKSYVE 406 (416)
T ss_pred EEEeEeccchhcCcHHHHHHHHHHHHHHh
Confidence 56999999999953 3345555555444
No 45
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=26.90 E-value=1.8e+02 Score=18.84 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.4
Q ss_pred EEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHh
Q 047271 59 MTFCVAVDPNVIP-DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 59 l~~~v~ad~~~vp-D~~~l~~~l~~al~eL~~a~~ 92 (104)
=...+.-|++++. |.+.|.+.+.+++++-.+.+.
T Consensus 51 ~v~~v~Id~~~l~~d~e~LedlI~~A~N~A~~k~~ 85 (102)
T TIGR00103 51 ELKSIEIDPSLLEEDKEALEDMITEALNDAVKKVE 85 (102)
T ss_pred eEEEEEECHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888885 999999999999888766554
No 46
>PRK14629 hypothetical protein; Provisional
Probab=25.43 E-value=2e+02 Score=18.83 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=28.3
Q ss_pred CCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHhh
Q 047271 56 VNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVVE 93 (104)
Q Consensus 56 ~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~~ 93 (104)
+..--..+.-|++++. |++.|.+.+..++++-.+.+.+
T Consensus 46 G~~~v~~i~Idp~lld~eD~e~LeDLI~aAvNdA~~k~~e 85 (99)
T PRK14629 46 GEFNVKKVSIKEEFFDDLDNEALEHMIKSAFNDAVSKVKE 85 (99)
T ss_pred cCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467788889884 7999999999998887665543
No 47
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=25.25 E-value=56 Score=20.15 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=37.2
Q ss_pred EEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Q 047271 51 HFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVVERGLIEDDAAQ 103 (104)
Q Consensus 51 ~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~~~~~~~~~~~~ 103 (104)
=++.|+| --..||+--=.|+...+..-..+-||..|.-+....+||.++
T Consensus 7 RvF~~~g----i~L~DP~p~~spe~V~dfYs~~YPeLttA~v~gP~~~~~~~~ 55 (66)
T TIGR03738 7 RVFTYNG----VRLADPSPAMSPEQVRDFYSAQYPELLNAEVEGPVVKGGVQT 55 (66)
T ss_pred EEEEECC----eEcCCCCCCCCHHHHHHHHhccCchheeeeeeCCeEeCCEEE
Confidence 3688998 335787655588888888888888998888777777777653
No 48
>KOG3717 consensus Carnitine O-acyltransferase CRAT [Lipid transport and metabolism]
Probab=24.54 E-value=1.9e+02 Score=25.00 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=37.2
Q ss_pred EeccccCCCceeEEEEeeeCCEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 047271 37 LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVI-PDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 37 ~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~v-pD~~~l~~~l~~al~eL~~a~~ 92 (104)
++|+.+. |-+++-.--..++.|.+++=+..- -|..+|+..+++++.+|+++..
T Consensus 550 yGpvv~d---GYG~cYNp~~~~i~f~isaf~sc~~Ts~~rfak~L~~al~dmkdll~ 603 (612)
T KOG3717|consen 550 YGPVVPD---GYGCCYNPQEEHIIFAISAFRSCPETSASRFAKYLEQALDDMRDLLS 603 (612)
T ss_pred ecCcCCC---CcccccCCCcceEEEEeeccccCccccHHHHHHHHHHHHHHHHHHHH
Confidence 6674332 334444445577888887755442 3899999999999999998765
No 49
>KOG3719 consensus Carnitine O-acyltransferase CPT2/YAT1 [Lipid transport and metabolism]
Probab=24.53 E-value=2.2e+02 Score=24.66 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=37.5
Q ss_pred EeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 047271 37 LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVVE 93 (104)
Q Consensus 37 ~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~~ 93 (104)
|+|+... |.+|+-.=-++++...|++-+.-- ..+|..+++.+|+|+.....+
T Consensus 581 fgPvv~~---GFGIGY~I~d~~vg~vVsS~~~q~--~~~f~~~leksL~ei~~~~~~ 632 (638)
T KOG3719|consen 581 FGPVVPN---GFGIGYIIKDDQVGAVVSSYKRQR--GARFMFMLEKSLDEIRSYLRM 632 (638)
T ss_pred ccccccC---CcceeeEeecCccceEEecccccc--HHHHHHHHHHHHHHHHHHHhc
Confidence 7885332 445555557788877777766543 789999999999999887653
No 50
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=24.12 E-value=2.8e+02 Score=21.62 Aligned_cols=44 Identities=9% Similarity=0.264 Sum_probs=34.8
Q ss_pred ceeEEEEeeeC---CEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 46 HALTIHFQSYV---NKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 46 ~~L~i~v~SY~---g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
+-+.+-+++.+ |++.+++- .+-|||+.+.+..+..+++..+.+.
T Consensus 244 d~VkvkVl~iD~e~~rI~LS~K---~l~~~P~~~~~~~~~~~~~~~~~~~ 290 (318)
T PRK07400 244 DEMKVMIIDLDAERGRISLSTK---QLEPEPGDMLKDPQKVFDKAEEMAA 290 (318)
T ss_pred CEEEEEEEEEeCCCCEEEEEEe---ccccChhhhhhhHHHHHHHHHHHHH
Confidence 36677777765 78887764 5778999999999999999887664
No 51
>PF07335 Glyco_hydro_75: Fungal chitosanase of glycosyl hydrolase group 75; InterPro: IPR009939 This family consists of chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase [].
Probab=23.71 E-value=1.2e+02 Score=21.49 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.2
Q ss_pred ceeEEEEeeeCCEEEEEEEecCC
Q 047271 46 HALTIHFQSYVNKMTFCVAVDPN 68 (104)
Q Consensus 46 ~~L~i~v~SY~g~l~~~v~ad~~ 68 (104)
.++.+++.-|+|++..+|..|..
T Consensus 64 ~~gsv~aVv~~~k~~y~I~GDtg 86 (156)
T PF07335_consen 64 KPGSVAAVVCNGKVVYAIVGDTG 86 (156)
T ss_pred CCCcEEEEEECCEEEEEEEeccC
Confidence 47888888899999999999873
No 52
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=23.52 E-value=4.2e+02 Score=22.71 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.9
Q ss_pred EEEEEEEecCCCCC
Q 047271 58 KMTFCVAVDPNVIP 71 (104)
Q Consensus 58 ~l~~~v~ad~~~vp 71 (104)
.+.+++++|..++.
T Consensus 597 ~m~lslt~DHRviD 610 (633)
T PRK11854 597 MLPLSLSYDHRVID 610 (633)
T ss_pred EEEEeEEccchhcc
Confidence 46699999999995
No 53
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=22.84 E-value=89 Score=23.08 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.6
Q ss_pred EeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 047271 52 FQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIK 88 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~ 88 (104)
.++|.|+=.-|....++ ...+.+.++++|..+.
T Consensus 6 ~i~YdGt~f~G~Q~Q~~----~~TVq~~le~aL~~~~ 38 (227)
T TIGR00071 6 KIAYDGSNYHGWQRQPN----KRTVQGELEKALEAIG 38 (227)
T ss_pred EEEEcCCCeeEEeECcC----CCCHHHHHHHHHHHHh
Confidence 57899999999988754 3467788888888876
No 54
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=22.81 E-value=3.6e+02 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEEecCCCCC--CHHHHHHHHHHHHHH
Q 047271 59 MTFCVAVDPNVIP--DPHLLCKDIEESLKV 86 (104)
Q Consensus 59 l~~~v~ad~~~vp--D~~~l~~~l~~al~e 86 (104)
+.++++.|..++. +..+|...+.+-++.
T Consensus 366 m~lsLt~DHRviDGa~aa~Fl~~l~~~le~ 395 (403)
T TIGR01347 366 MYLALSYDHRLIDGKEAVTFLVTIKELLED 395 (403)
T ss_pred EEEEEEecchhhChHHHHHHHHHHHHHhcC
Confidence 4699999999995 344455555554443
No 55
>PF09658 Cas_Csx9: CRISPR-associated protein (Cas_Csx9); InterPro: IPR013488 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Cxs9 family of Cas proteins found in archaea. These proteins are encoded in the midst of a cas gene operon [].
Probab=22.25 E-value=1.7e+02 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.2
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 63 VAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 63 v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
++.|...=||.+.|++.++.+++.+.+...
T Consensus 4 vv~dag~epd~~~laeale~~~dslesR~~ 33 (377)
T PF09658_consen 4 VVMDAGLEPDEEELAEALENAMDSLESRKK 33 (377)
T ss_pred EEeccCCCCChHHHHHHHHHHHHHHHHhhh
Confidence 466888889999999999999999987664
No 56
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=22.13 E-value=2.7e+02 Score=19.07 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=29.0
Q ss_pred eEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 047271 48 LTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLK 85 (104)
Q Consensus 48 L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~ 85 (104)
++|+.+.=-|...+=+.+|.+.+ +|+...+.+.++|.
T Consensus 66 isIHTwPE~gyaavDiftCg~~~-~p~~a~~~L~~~f~ 102 (131)
T PRK01236 66 ISIHTWPEYGLVTLDVYTCGDPS-KADKAFEYIIKKLK 102 (131)
T ss_pred EEEEeCccCCeEEEEEEecCCCC-CHHHHHHHHHHHhC
Confidence 55666666788888888888766 89998888888875
No 57
>PRK14626 hypothetical protein; Provisional
Probab=21.97 E-value=2.5e+02 Score=18.64 Aligned_cols=38 Identities=8% Similarity=-0.059 Sum_probs=27.2
Q ss_pred eCCEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHh
Q 047271 55 YVNKMTFCVAVDPNVIP--DPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 55 Y~g~l~~~v~ad~~~vp--D~~~l~~~l~~al~eL~~a~~ 92 (104)
-+..-...+..|++++. |.+.|.+.+..++++-.+.+.
T Consensus 47 nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A~~k~~ 86 (110)
T PRK14626 47 NGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEASRRSK 86 (110)
T ss_pred ECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34444457778888883 788899999888887665554
No 58
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=21.87 E-value=83 Score=16.96 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=7.4
Q ss_pred eeeCCEEEE
Q 047271 53 QSYVNKMTF 61 (104)
Q Consensus 53 ~SY~g~l~~ 61 (104)
+.|+|++.+
T Consensus 10 IfY~G~V~V 18 (36)
T PF06200_consen 10 IFYGGQVCV 18 (36)
T ss_pred EEECCEEEE
Confidence 469999886
No 59
>KOG4743 consensus Cyclin-dependent kinase inhibitor [Signal transduction mechanisms]
Probab=21.77 E-value=1.3e+02 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q 047271 71 PDPHLLCKDIEESLKVIKDCVVER 94 (104)
Q Consensus 71 pD~~~l~~~l~~al~eL~~a~~~~ 94 (104)
+|++++.+.|+..+++|.+...++
T Consensus 26 vd~EElSR~l~s~l~~m~~e~~~K 49 (195)
T KOG4743|consen 26 VDHEELSRDLNSRLERMNEEDQQK 49 (195)
T ss_pred CCHHHHhHHHHHHHHHHHHHHHhc
Confidence 699999999999999999887644
No 60
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Probab=21.74 E-value=86 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=27.0
Q ss_pred EeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 047271 52 FQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIK 88 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~ 88 (104)
.++|.|+-.-|+...++. ..+.+.++++|..+.
T Consensus 2 ~i~Y~Gt~f~G~q~q~~~----~TVq~~le~aL~~~~ 34 (239)
T cd02570 2 TIEYDGTNFSGWQRQPNG----RTVQGELEKALSKIA 34 (239)
T ss_pred EEEEeCCccceeeeCCCC----CCHHHHHHHHHHHHh
Confidence 579999999999987654 577788888888875
No 61
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=21.18 E-value=2.3e+02 Score=22.11 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=17.7
Q ss_pred EEEEEEEecCCCCCC--HHHHHHHHHHHHH
Q 047271 58 KMTFCVAVDPNVIPD--PHLLCKDIEESLK 85 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD--~~~l~~~l~~al~ 85 (104)
.+.++++.|..++.- ..+|...+.+.++
T Consensus 269 ~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 298 (306)
T PRK11857 269 VMHLTVAADHRWIDGATIGRFASRVKELLE 298 (306)
T ss_pred eeEEeEecchhhhCcHHHHHHHHHHHHHhc
Confidence 457999999999953 3334444444443
No 62
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=20.92 E-value=2.9e+02 Score=22.42 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=17.9
Q ss_pred EEEEEEEecCCCCCC--HHHHHHHHHHHHH
Q 047271 58 KMTFCVAVDPNVIPD--PHLLCKDIEESLK 85 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD--~~~l~~~l~~al~ 85 (104)
.+.++++.|..++.- ..+|...|.+-++
T Consensus 369 ~~~lsls~DHRviDGa~aa~Fl~~l~~~le 398 (407)
T PRK05704 369 MMYLALSYDHRIIDGKEAVGFLVTIKELLE 398 (407)
T ss_pred EEEEEEEechhhhCcHHHHHHHHHHHHHhh
Confidence 456999999999953 3344444444443
No 63
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=20.90 E-value=2.8e+02 Score=18.82 Aligned_cols=37 Identities=30% Similarity=0.294 Sum_probs=29.1
Q ss_pred eEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 047271 48 LTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLK 85 (104)
Q Consensus 48 L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~ 85 (104)
++|+.+.=-|...+=+.+|.+.+ ||+...+.+.+.|+
T Consensus 65 isIHTwPE~gyaavDiftCg~~~-~p~~a~~~L~~~f~ 101 (127)
T PRK03124 65 LTIHTWPELGYAAVDVFTCGDRV-DPWDACNYIAEGLG 101 (127)
T ss_pred EEEEeCccCCeEEEEEEecCCCC-CHHHHHHHHHHHhC
Confidence 45666666788888899998877 88888888888774
No 64
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=20.80 E-value=55 Score=19.89 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=8.1
Q ss_pred eeCCEEEEEEEec
Q 047271 54 SYVNKMTFCVAVD 66 (104)
Q Consensus 54 SY~g~l~~~v~ad 66 (104)
+|.|.|.||+++.
T Consensus 55 ~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 55 SWSGSLRIGVTSC 67 (69)
T ss_dssp SSSS--EEEEESS
T ss_pred CceeEEEEeeEcc
Confidence 4778888888764
No 65
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=20.25 E-value=3e+02 Score=20.66 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=39.5
Q ss_pred eccC---CCccceEEcCceEe-E-Ee-ccccCCCceeEEEEeeeCCEEEEEEEec-------------------------
Q 047271 18 SNVV---GPLEEISFYGHPMA-Y-LA-PSVYGHPHALTIHFQSYVNKMTFCVAVD------------------------- 66 (104)
Q Consensus 18 SNVP---GP~~pl~l~Ga~v~-~-~~-p~~~~~~~~L~i~v~SY~g~l~~~v~ad------------------------- 66 (104)
+.+| |+ .|..+.|.+.. . +. ++|... ..-.|+|..+.|...|.-.-.
T Consensus 143 csiP~~~g~-~P~~~~G~~yvDGGvsdnlPv~~-~~~titVspf~~~~di~p~~~~~~~~~~~~~~~~~~~~~~n~~r~~ 220 (249)
T cd07220 143 CFIPVYCGL-IPPTLRGVRYVDGGISDNLPQYE-LKNTITVSPFSGESDICPRDSSTNFHELRFTNTSIQFNLRNLYRLS 220 (249)
T ss_pred ccCccccCC-CCeeECCEEEEcCCcccCCCCCC-CCCeEEEecCccCCCcCCCCCCcccceeEEecceEEeeHHHHHHHH
Confidence 5677 65 36667888776 2 22 232111 133778888877733322111
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHH
Q 047271 67 PNV-IPDPHLLCKDIEESLKVIKD 89 (104)
Q Consensus 67 ~~~-vpD~~~l~~~l~~al~eL~~ 89 (104)
... =|+++.+.+.++..+++-.+
T Consensus 221 ~~l~pp~~~~l~~~~~~g~~da~~ 244 (249)
T cd07220 221 KALFPPEPQVLAEMCKQGYRDALR 244 (249)
T ss_pred HhhcCCCHHHHHHHHHcchHHHHH
Confidence 111 26888888888877776554
Done!